Metagenome / Metatranscriptome Family F034330

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F034330
Family Type	Metagenome / Metatranscriptome
Number of Sequences	175
Average Sequence Length	44 residues
Representative Sequence	VRAVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGPSTGIAWR
Number of Associated Samples	120
Number of Associated Scaffolds	175

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.00 %
% of genes near scaffold ends (potentially truncated)	32.00 %
% of genes from short scaffolds (< 2000 bps)	78.86 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.571 % of family members)
Environment Ontology (ENVO)	Unclassified (32.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.30% β-sheet: 0.00% Coil/Unstructured: 52.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 175 Family Scaffolds
PF16363	GDP_Man_Dehyd	4.00
PF00196	GerE	2.29
PF04392	ABC_sub_bind	2.29
PF00072	Response_reg	1.71
PF01068	DNA_ligase_A_M	1.71
PF07366	SnoaL	1.71
PF00005	ABC_tran	1.14
PF07589	PEP-CTERM	1.14
PF01527	HTH_Tnp_1	1.14
PF13408	Zn_ribbon_recom	0.57
PF13727	CoA_binding_3	0.57
PF01569	PAP2	0.57
PF00892	EamA	0.57
PF05969	PSII_Ycf12	0.57
PF02615	Ldh_2	0.57
PF01842	ACT	0.57
PF01717	Meth_synt_2	0.57
PF00211	Guanylate_cyc	0.57
PF00565	SNase	0.57
PF00528	BPD_transp_1	0.57
PF00664	ABC_membrane	0.57
PF03354	TerL_ATPase	0.57
PF03102	NeuB	0.57
PF13541	ChlI	0.57
PF04909	Amidohydro_2	0.57
PF08402	TOBE_2	0.57
PF00691	OmpA	0.57
PF06723	MreB_Mbl	0.57
PF08352	oligo_HPY	0.57
PF09347	DUF1989	0.57
PF01266	DAO	0.57
PF03928	HbpS-like	0.57
PF01370	Epimerase	0.57
PF02653	BPD_transp_2	0.57
PF01844	HNH	0.57
PF13495	Phage_int_SAM_4	0.57
PF03033	Glyco_transf_28	0.57

COG ID	Name	Functional Category	% Frequency in 175 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.29
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.71
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.71
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.57
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.57
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.57
COG2089	Sialic acid synthase SpsE, contains C-terminal SAF domain	Cell wall/membrane/envelope biogenesis [M]	0.57
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.57
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.57

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
All Organisms	root	All Organisms	34.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
cellular organisms	root	All Organisms → cellular organisms	34.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.71 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.29 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.71 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.57 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.57 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.57 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.57 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.29 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.14 %
Candidatus Troglogloeales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Candidatus Troglogloeales	0.57 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.57 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.57 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.57 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	6.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.29 %
Azonexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae	1.14 %
Candidatus Manganitrophaceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Candidatus Troglogloeales → Candidatus Manganitrophaceae	0.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.57 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.57 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.57 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.29 %
Ferribacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Ferribacterium	1.14 %
Candidatus Manganitrophus	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Candidatus Troglogloeales → Candidatus Manganitrophaceae → Candidatus Manganitrophus	0.57 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.57 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.57 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.57 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.14 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.29 %
Ferribacterium limneticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Ferribacterium → Ferribacterium limneticum	1.14 %
Candidatus Manganitrophus noduliformans	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Candidatus Troglogloeales → Candidatus Manganitrophaceae → Candidatus Manganitrophus → Candidatus Manganitrophus noduliformans	0.57 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.57 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.57 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.57 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.57 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10806287	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300001661\|JGI12053J15887_10506491	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300003995\|Ga0055438_10016062	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300004058\|Ga0055498_10147793	Not Available	511	Open in IMG/M
3300004114\|Ga0062593_103059325	Not Available	535	Open in IMG/M
3300004463\|Ga0063356_100300640	Not Available	1989	Open in IMG/M
3300004463\|Ga0063356_101246291	Not Available	1084	Open in IMG/M
3300005093\|Ga0062594_101909413	Not Available	630	Open in IMG/M
3300005445\|Ga0070708_100005938	All Organisms → cellular organisms → Bacteria	9709	Open in IMG/M
3300005467\|Ga0070706_100679342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	955	Open in IMG/M
3300005471\|Ga0070698_100370786	Not Available	1364	Open in IMG/M
3300005549\|Ga0070704_100010344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	5675	Open in IMG/M
3300005843\|Ga0068860_101033806	Not Available	840	Open in IMG/M
3300005876\|Ga0075300_1059215	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300006041\|Ga0075023_100065105	Not Available	1181	Open in IMG/M
3300006172\|Ga0075018_10000759	All Organisms → cellular organisms → Bacteria	10218	Open in IMG/M
3300006845\|Ga0075421_102361437	Not Available	557	Open in IMG/M
3300006852\|Ga0075433_10001377	All Organisms → cellular organisms → Bacteria	17867	Open in IMG/M
3300006854\|Ga0075425_102127653	Not Available	626	Open in IMG/M
3300007265\|Ga0099794_10165921	Not Available	1124	Open in IMG/M
3300009038\|Ga0099829_10028549	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	3948	Open in IMG/M
3300009038\|Ga0099829_10543789	Not Available	965	Open in IMG/M
3300009053\|Ga0105095_10078122	Not Available	1787	Open in IMG/M
3300009087\|Ga0105107_10495594	Not Available	851	Open in IMG/M
3300009087\|Ga0105107_10861539	Not Available	630	Open in IMG/M
3300009088\|Ga0099830_10075448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Ferribacterium → Ferribacterium limneticum	2457	Open in IMG/M
3300009088\|Ga0099830_10155990	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Candidatus Troglogloeales → Candidatus Manganitrophaceae → Candidatus Manganitrophus → Candidatus Manganitrophus noduliformans	1759	Open in IMG/M
3300009090\|Ga0099827_10841189	Not Available	794	Open in IMG/M
3300009166\|Ga0105100_10288694	Not Available	984	Open in IMG/M
3300009166\|Ga0105100_10608308	Not Available	670	Open in IMG/M
3300009174\|Ga0105241_10853351	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300009553\|Ga0105249_10201070	Not Available	1950	Open in IMG/M
3300009553\|Ga0105249_10685359	Not Available	1084	Open in IMG/M
3300010397\|Ga0134124_10082711	Not Available	2763	Open in IMG/M
3300010400\|Ga0134122_12498888	Not Available	566	Open in IMG/M
3300011270\|Ga0137391_10503514	Not Available	1025	Open in IMG/M
3300011271\|Ga0137393_10470723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1078	Open in IMG/M
3300012096\|Ga0137389_11215981	Not Available	645	Open in IMG/M
3300012189\|Ga0137388_10059037	All Organisms → cellular organisms → Bacteria	3148	Open in IMG/M
3300012203\|Ga0137399_10320444	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1284	Open in IMG/M
3300012203\|Ga0137399_10369958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1192	Open in IMG/M
3300012203\|Ga0137399_11075175	Not Available	677	Open in IMG/M
3300012205\|Ga0137362_10129170	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300012225\|Ga0137434_1003158	Not Available	1513	Open in IMG/M
3300012225\|Ga0137434_1072366	Not Available	545	Open in IMG/M
3300012361\|Ga0137360_11847272	Not Available	510	Open in IMG/M
3300012363\|Ga0137390_10499796	Not Available	1190	Open in IMG/M
3300012363\|Ga0137390_10904681	Not Available	837	Open in IMG/M
3300012685\|Ga0137397_10225540	All Organisms → cellular organisms → Bacteria → Acidobacteria	1395	Open in IMG/M
3300012685\|Ga0137397_10272042	Not Available	1262	Open in IMG/M
3300012922\|Ga0137394_10008909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7803	Open in IMG/M
3300012922\|Ga0137394_10010581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7212	Open in IMG/M
3300012922\|Ga0137394_10365532	Not Available	1231	Open in IMG/M
3300012923\|Ga0137359_11695086	Not Available	519	Open in IMG/M
3300012925\|Ga0137419_10128198	Not Available	1802	Open in IMG/M
3300012927\|Ga0137416_10409457	Not Available	1151	Open in IMG/M
3300012927\|Ga0137416_10609739	Not Available	952	Open in IMG/M
3300012927\|Ga0137416_11134982	Not Available	702	Open in IMG/M
3300012929\|Ga0137404_10952215	Not Available	784	Open in IMG/M
3300015170\|Ga0120098_1009490	Not Available	1042	Open in IMG/M
3300015245\|Ga0137409_10126007	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300015259\|Ga0180085_1101325	Not Available	849	Open in IMG/M
3300018000\|Ga0184604_10000287	All Organisms → cellular organisms → Bacteria	5025	Open in IMG/M
3300018028\|Ga0184608_10524952	Not Available	505	Open in IMG/M
3300018052\|Ga0184638_1083611	Not Available	1170	Open in IMG/M
3300018052\|Ga0184638_1113479	Not Available	992	Open in IMG/M
3300018056\|Ga0184623_10420718	Not Available	584	Open in IMG/M
3300018056\|Ga0184623_10520227	Not Available	505	Open in IMG/M
3300018061\|Ga0184619_10068591	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1563	Open in IMG/M
3300018061\|Ga0184619_10329093	Not Available	698	Open in IMG/M
3300018061\|Ga0184619_10492130	Not Available	542	Open in IMG/M
3300018063\|Ga0184637_10007261	All Organisms → cellular organisms → Bacteria	6710	Open in IMG/M
3300018063\|Ga0184637_10095234	Not Available	1831	Open in IMG/M
3300018070\|Ga0184631_10275415	Not Available	697	Open in IMG/M
3300018071\|Ga0184618_10423797	Not Available	562	Open in IMG/M
3300018075\|Ga0184632_10072981	Not Available	1495	Open in IMG/M
3300018075\|Ga0184632_10437122	Not Available	544	Open in IMG/M
3300018076\|Ga0184609_10011679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3294	Open in IMG/M
3300018076\|Ga0184609_10073820	Not Available	1498	Open in IMG/M
3300018079\|Ga0184627_10426774	Not Available	689	Open in IMG/M
3300018084\|Ga0184629_10022409	All Organisms → cellular organisms → Bacteria	2635	Open in IMG/M
3300018084\|Ga0184629_10488431	Not Available	642	Open in IMG/M
3300018422\|Ga0190265_10201138	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
3300018422\|Ga0190265_10648223	Not Available	1176	Open in IMG/M
3300018422\|Ga0190265_11446472	Not Available	801	Open in IMG/M
3300018422\|Ga0190265_12094169	Not Available	670	Open in IMG/M
3300018422\|Ga0190265_13500856	Not Available	523	Open in IMG/M
3300018429\|Ga0190272_10052110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2376	Open in IMG/M
3300018429\|Ga0190272_10881580	Not Available	837	Open in IMG/M
3300018429\|Ga0190272_11557669	Not Available	675	Open in IMG/M
3300019360\|Ga0187894_10364690	Not Available	650	Open in IMG/M
3300019377\|Ga0190264_10895385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300019377\|Ga0190264_11596721	Not Available	573	Open in IMG/M
3300019458\|Ga0187892_10003359	All Organisms → cellular organisms → Bacteria	29460	Open in IMG/M
3300019881\|Ga0193707_1092486	Not Available	913	Open in IMG/M
3300019883\|Ga0193725_1095077	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300019883\|Ga0193725_1148802	Not Available	506	Open in IMG/M
3300019889\|Ga0193743_1074850	Not Available	1353	Open in IMG/M
3300020170\|Ga0179594_10180476	Not Available	788	Open in IMG/M
3300021073\|Ga0210378_10002496	All Organisms → cellular organisms → Bacteria	9279	Open in IMG/M
3300021073\|Ga0210378_10036012	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300021073\|Ga0210378_10403448	Not Available	507	Open in IMG/M
3300021080\|Ga0210382_10220668	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300021080\|Ga0210382_10277127	Not Available	736	Open in IMG/M
3300021081\|Ga0210379_10059098	Not Available	1542	Open in IMG/M
3300021081\|Ga0210379_10221369	Not Available	818	Open in IMG/M
3300021088\|Ga0210404_10004878	All Organisms → cellular organisms → Bacteria	5395	Open in IMG/M
3300021178\|Ga0210408_11096552	Not Available	612	Open in IMG/M
3300021344\|Ga0193719_10047757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1854	Open in IMG/M
3300021432\|Ga0210384_10095565	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
3300021432\|Ga0210384_10122044	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2337	Open in IMG/M
3300022534\|Ga0224452_1031228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1537	Open in IMG/M
3300022534\|Ga0224452_1049753	Not Available	1243	Open in IMG/M
3300022534\|Ga0224452_1191982	Not Available	628	Open in IMG/M
3300022694\|Ga0222623_10062727	Not Available	1435	Open in IMG/M
3300022694\|Ga0222623_10173033	Not Available	840	Open in IMG/M
3300022694\|Ga0222623_10293125	Not Available	625	Open in IMG/M
3300022694\|Ga0222623_10426178	Not Available	503	Open in IMG/M
3300024330\|Ga0137417_1239462	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300025324\|Ga0209640_10000879	All Organisms → cellular organisms → Bacteria	24352	Open in IMG/M
3300025324\|Ga0209640_10079407	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2835	Open in IMG/M
3300025324\|Ga0209640_10550135	Not Available	936	Open in IMG/M
3300025549\|Ga0210094_1025692	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300025910\|Ga0207684_10079458	Not Available	2790	Open in IMG/M
3300025910\|Ga0207684_11655728	Not Available	517	Open in IMG/M
3300025912\|Ga0207707_11160360	Not Available	627	Open in IMG/M
3300025917\|Ga0207660_10178490	Not Available	1648	Open in IMG/M
3300025923\|Ga0207681_10421612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1081	Open in IMG/M
3300025961\|Ga0207712_10214090	All Organisms → cellular organisms → Bacteria	1536	Open in IMG/M
3300026041\|Ga0207639_11697014	Not Available	592	Open in IMG/M
3300026075\|Ga0207708_11022597	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300026285\|Ga0209438_1206776	Not Available	525	Open in IMG/M
3300026320\|Ga0209131_1369167	Not Available	534	Open in IMG/M
3300026358\|Ga0257166_1033365	Not Available	708	Open in IMG/M
3300026499\|Ga0257181_1097434	Not Available	518	Open in IMG/M
3300026535\|Ga0256867_10116280	Not Available	1021	Open in IMG/M
3300026535\|Ga0256867_10226746	Not Available	677	Open in IMG/M
3300026551\|Ga0209648_10112482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Ferribacterium → Ferribacterium limneticum	2212	Open in IMG/M
3300027650\|Ga0256866_1047452	Not Available	1136	Open in IMG/M
3300027655\|Ga0209388_1174060	Not Available	603	Open in IMG/M
3300027731\|Ga0209592_1347319	Not Available	502	Open in IMG/M
3300027815\|Ga0209726_10246096	Not Available	907	Open in IMG/M
3300027894\|Ga0209068_10001935	All Organisms → cellular organisms → Bacteria	10220	Open in IMG/M
3300027894\|Ga0209068_10047751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2165	Open in IMG/M
3300027915\|Ga0209069_10078495	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300028047\|Ga0209526_10047696	All Organisms → cellular organisms → Bacteria	3016	Open in IMG/M
3300028380\|Ga0268265_11365915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	710	Open in IMG/M
3300028536\|Ga0137415_10107117	Not Available	2644	Open in IMG/M
3300028536\|Ga0137415_11024444	Not Available	637	Open in IMG/M
3300028716\|Ga0307311_10234483	Not Available	543	Open in IMG/M
3300028792\|Ga0307504_10094467	Not Available	941	Open in IMG/M
3300028792\|Ga0307504_10271439	Not Available	628	Open in IMG/M
3300028796\|Ga0307287_10296889	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300028803\|Ga0307281_10006611	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3175	Open in IMG/M
3300028803\|Ga0307281_10007766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2959	Open in IMG/M
3300028803\|Ga0307281_10243662	Not Available	658	Open in IMG/M
3300028807\|Ga0307305_10512695	Not Available	537	Open in IMG/M
3300028819\|Ga0307296_10252830	Not Available	959	Open in IMG/M
3300028824\|Ga0307310_10363999	Not Available	713	Open in IMG/M
3300030006\|Ga0299907_10980840	Not Available	622	Open in IMG/M
3300030619\|Ga0268386_10005315	All Organisms → cellular organisms → Bacteria	9582	Open in IMG/M
3300030619\|Ga0268386_10076820	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2606	Open in IMG/M
3300030619\|Ga0268386_10082365	Not Available	2507	Open in IMG/M
3300030619\|Ga0268386_10312234	Not Available	1133	Open in IMG/M
3300030619\|Ga0268386_10623267	Not Available	716	Open in IMG/M
3300030619\|Ga0268386_10876856	Not Available	565	Open in IMG/M
3300031093\|Ga0308197_10323749	Not Available	577	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10016013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1926	Open in IMG/M
3300031229\|Ga0299913_10020286	All Organisms → cellular organisms → Bacteria	6133	Open in IMG/M
(restricted) 3300031237\|Ga0255334_1018304	Not Available	851	Open in IMG/M
3300031720\|Ga0307469_10256063	Not Available	1412	Open in IMG/M
3300032180\|Ga0307471_100485644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1381	Open in IMG/M
3300033513\|Ga0316628_104112302	Not Available	519	Open in IMG/M
3300033811\|Ga0364924_182746	Not Available	503	Open in IMG/M
3300034257\|Ga0370495_0025657	Not Available	1758	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.57%
Host-Associated	Host-Associated	7.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.86%
Aquatic	Environmental → Aquatic	29.71%
Plants	Host-Associated → Plants	7.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.14%
Sediment	Environmental → Aquatic → Sediment	20.00%
Freshwater	Environmental → Aquatic → Freshwater	8.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Marine	Environmental → Aquatic → Marine	1.71%
Cave	Environmental → Terrestrial → Cave	1.14%
Floodplain	Environmental → Terrestrial → Floodplain	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.86%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.71%
Sand	Environmental → Terrestrial → Soil → Sand	1.14%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.14%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.57%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.29%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.14%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.14%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.14%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.57%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.57%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.57%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.43%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.43%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.43%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.86%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.71%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.14%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.14%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.14%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.14%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.14%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.57%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.57%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.57%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.57%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.57%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.57%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031237 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_108062874	3300000891	Soil	VRVVETLTLLLVATALFMWVILAHPTPDEQGRLYDSMGPSTGIAWR*
JGI12053J15887_105064913	3300001661	Forest Soil	VRAVETLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR*
Ga0055438_100160623	3300003995	Natural And Restored Wetlands	MRVVETLTLLLVATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR*
Ga0055498_101477932	3300004058	Natural And Restored Wetlands	MRVVETLTLLLVATVLFMWVVLAHPTPDERARLHDSMGQSTGIAWR*
Ga0062593_1030593252	3300004114	Soil	MRAVETLTLLLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR*
Ga0063356_1003006404	3300004463	Arabidopsis Thaliana Rhizosphere	MPPLRRGMTGLLMRLVEALALLLVATVLFMWVILAHPTPDERARLHDSMGQSTGMAWR*
Ga0063356_1012462912	3300004463	Arabidopsis Thaliana Rhizosphere	MLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR*
Ga0062594_1019094131	3300005093	Soil	MRLVEALALLLVATVLFMWVILAHPTPDERARLHDSMGQSTGMAWR*
Ga0070708_1000059389	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRSVEPVTLVLIATVLFMWVVLGHSPPDERARLQDSMGQSTGIAWR*
Ga0070706_1006793422	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LTLLLVTTVLFMWVIFAPPTPDERARLHDSMGASTGIAWR*
Ga0070698_1003707861	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRGVETVTLVLIATVLFMWVVLGHSTPDERARLQDSMGQSTGIAWR*
Ga0070704_1000103446	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LTLLLVATALFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR*
Ga0068860_1010338061	3300005843	Switchgrass Rhizosphere	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR*
Ga0075300_10592151	3300005876	Rice Paddy Soil	AVTGPLMRVVETLTLFLAAIVLFMWVIFAHPTSDERARLYDSMGQSTGIAWR*
Ga0075023_1000651053	3300006041	Watersheds	MRGVETLMLVLIATVLFMWVVLGHSTPDERARLHDSIGDSTGIAWR*
Ga0075018_100007598	3300006172	Watersheds	MRGVETLMLVLIATVLFMWVVLGHSTSDERARLHDSMGDSTGIAWR*
Ga0075421_1023614371	3300006845	Populus Rhizosphere	MRVVETVTLLLVATVLFMWVVLAHPTPDERARLYDSMGQSTGIAWR*
Ga0075433_1000137722	3300006852	Populus Rhizosphere	MRGVETLMLVLIATVLFMWVVLGHSTPDERARLYDSMGDSTGIAWR*
Ga0075425_1021276531	3300006854	Populus Rhizosphere	MRAIETLTVVLAAIVLFMWAILAHSTPDGRARLHDSMGSST
Ga0099794_101659214	3300007265	Vadose Zone Soil	TLLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAWR*
Ga0099829_100285492	3300009038	Vadose Zone Soil	MLLLAATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR*
Ga0099829_105437893	3300009038	Vadose Zone Soil	MRAVETLTLLLAATVLFMWAIFAHPTPDERARLHDSMGPSTGIAWR*
Ga0105095_100781222	3300009053	Freshwater Sediment	MRLVETLALLLAATVLFIWVILAHPTADERARLHDSMGQSTGIAWR*
Ga0105107_104955944	3300009087	Freshwater Sediment	MRLVETLTLLLAATVLFMWVILAHPTADERARLHDSLGQSTGIAWR*
Ga0105107_108615392	3300009087	Freshwater Sediment	MRVVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGSSTGIAWR*
Ga0099830_100754483	3300009088	Vadose Zone Soil	VRVVETLTLLLVATVLFMWVIFAPPTPDERARLHDSMGASTGIAWR*
Ga0099830_101559905	3300009088	Vadose Zone Soil	MRATETLAVVLAAIVLFMWAVLAHSTPDERARLHDSMGPSTGIAWR*
Ga0099827_108411892	3300009090	Vadose Zone Soil	VRAVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGPSTGIAWR*
Ga0105100_102886943	3300009166	Freshwater Sediment	TLLLAATVLFMWVIFAHPTPDERARLHDSMGSSTGIAWR*
Ga0105100_106083082	3300009166	Freshwater Sediment	MRLVETLALLLAATVLFIWVILAHPTADERARLHDS
Ga0105241_108533512	3300009174	Corn Rhizosphere	MRAVETLTLLLAATVLFMWVILAHPTPDERARLYDSMGSSTGVAWR*
Ga0105249_102010703	3300009553	Switchgrass Rhizosphere	TLLLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR*
Ga0105249_106853591	3300009553	Switchgrass Rhizosphere	SIVRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR*
Ga0134124_100827114	3300010397	Terrestrial Soil	VETLTLLLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR*
Ga0134122_124988881	3300010400	Terrestrial Soil	MRLVETLALLLAATVLFMWVILAHPTPDERARLHDSMGQSTGIAWR*
Ga0137391_105035142	3300011270	Vadose Zone Soil	MRGVETLTLVLIATVLFMWVILGHSTPDERARLQDSMGQSTGIAWR*
Ga0137393_104707232	3300011271	Vadose Zone Soil	ETLTLLLVATVLFMWVIFAHPTPDERARLHDSMGTSTGIAWR*
Ga0137389_112159812	3300012096	Vadose Zone Soil	ETLTLLLAATVLFMWAILAHPTPDERARLHDSMGQSTGIAWR*
Ga0137388_100590378	3300012189	Vadose Zone Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGMAWR*
Ga0137399_103204441	3300012203	Vadose Zone Soil	ETLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR*
Ga0137399_103699583	3300012203	Vadose Zone Soil	VRAVETLTLLLAATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR*
Ga0137399_110751753	3300012203	Vadose Zone Soil	VRVVETLTLLLVATVLFMWVIFAHPTPDERGRLYDSMGPSTGIAWR*
Ga0137362_101291702	3300012205	Vadose Zone Soil	MRGAETLTLVLIATVLFMWVVLGHSTPDERARLQDSMGQSTGIAWR*
Ga0137434_10031583	3300012225	Soil	VRAVETLTLLLAAIVLFMWAILAHPTPEERARLHDSLGPSTGIAWR*
Ga0137434_10723662	3300012225	Soil	MRVVETLTLVLAAAVLFMWVILAHPTPDERSRVYDSMGQSTGVAWR*
Ga0137360_118472721	3300012361	Vadose Zone Soil	RWRAGLREGAMRGVETLTLVLIATVLFMWVVLGHSTPDERARLQDSMGQSTGIAWR*
Ga0137390_104997964	3300012363	Vadose Zone Soil	LTLLLVATVLFMWVIFAHPTPDERGRLYDSMGPSTGIAW
Ga0137390_109046812	3300012363	Vadose Zone Soil	MRAAETLTLLLIGTVIFMWAVLAHSTPQEQARLHDAMGQSTGIAWR*
Ga0137397_102255402	3300012685	Vadose Zone Soil	VRVLETLTVLLVATVLFMWVILAHPTPDERARLHDSMGATTGIAWR*
Ga0137397_102720421	3300012685	Vadose Zone Soil	LTLLLAATVLFMWVIFAHPTPDERTRVYDSMGQSTGI
Ga0137394_100089092	3300012922	Vadose Zone Soil	VRVLETLTFLLVATVLFMWVILAHPTPDERARLHDSMGATTGIAWR*
Ga0137394_100105815	3300012922	Vadose Zone Soil	LTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR*
Ga0137394_103655323	3300012922	Vadose Zone Soil	MRVVETLTLLLAATALFMWVTFAHPTPDERTRVYDSMGQSTGIAWR*
Ga0137359_116950861	3300012923	Vadose Zone Soil	RGSIVRAVETLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR*
Ga0137419_101281984	3300012925	Vadose Zone Soil	LLIATLLFMWVTFSHQTPDPRARLHDSMGASTGIAWR*
Ga0137416_104094572	3300012927	Vadose Zone Soil	MRVVETLTLLLAATSLFMWVIFAHPTPDERTRVYDSMGQSTGIAWR*
Ga0137416_106097392	3300012927	Vadose Zone Soil	VRAVETLTLLLIAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR*
Ga0137416_111349821	3300012927	Vadose Zone Soil	MRGVETLTLVLIATVLFTWVVLGHSTPDERARLQDSMGQSTGIAWR*
Ga0137404_109522152	3300012929	Vadose Zone Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYHSMGPSTGIEWR*
Ga0120098_10094902	3300015170	Fossill	MRVVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR*
Ga0137409_101260072	3300015245	Vadose Zone Soil	MRVVETLTLLLAATALFMWVIFAHPTPAERTRVYDSMGQSTGIAWR*
Ga0180085_11013251	3300015259	Soil	LLLAATVLFMWAIFAHPTPEERARLHDSMGQSTGIAWR*
Ga0184604_100002873	3300018000	Groundwater Sediment	LTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR
Ga0184608_105249521	3300018028	Groundwater Sediment	VRAVETLTLLLAATVLFMWVIFAHPTPDERTRVYDSMGQST
Ga0184638_10836113	3300018052	Groundwater Sediment	VRAVETLTLLLAATVLFMWAIFAHPTPEERSRLHDSMGQSTGIAWR
Ga0184638_11134792	3300018052	Groundwater Sediment	LTLLLVATVLFMWVIFAHPTPDERARLHDSMGPSTGIAWR
Ga0184623_104207182	3300018056	Groundwater Sediment	VTLLLAATVLFMWAIFAHPTPEERSRLHDSMGQSTGIAWR
Ga0184623_105202271	3300018056	Groundwater Sediment	MRAVETLTLLLAATVLFMWAIFAHPTPDERARLHDSMGQSTGIAWR
Ga0184619_100685911	3300018061	Groundwater Sediment	LTLLLVAMVLFMWVIFAHPTSDEQSRLYDSMGPSTGIAWR
Ga0184619_103290932	3300018061	Groundwater Sediment	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR
Ga0184619_104921302	3300018061	Groundwater Sediment	MRAVETLTLLLAATVLFMWVILAHPTPDEQARVYDSMGQSTGIAWR
Ga0184637_100072617	3300018063	Groundwater Sediment	MRVAETLTVLVAAIVLFMWAVFAHSTPDERARLHDSMGPSTGIAWR
Ga0184637_100952344	3300018063	Groundwater Sediment	VRAVETVTLLLAATVLFMWAIFAHPTPEERSRLHDSMGQSTGIAWR
Ga0184631_102754152	3300018070	Groundwater Sediment	LALLLAATVLFMWAIFAHPTPEERARLHDSMGASTGIAWR
Ga0184618_104237971	3300018071	Groundwater Sediment	MRVVETLTLLLAATALFMWVIFAHPTPDERTRVYDSMGQSTGIAWR
Ga0184632_100729811	3300018075	Groundwater Sediment	MSHRGARGRRSIVRAIEMLMLVLAAIVVFMWVILAHPTPDEQARVYDSMGQSTGIAWR
Ga0184632_104371222	3300018075	Groundwater Sediment	LLAATVLFMWVILAHPTPEERARLHDSMGASTRIAWR
Ga0184609_100116797	3300018076	Groundwater Sediment	MLLLAATVLFMWVIFAHPTPDEQARVYDSMGKSTGIAWR
Ga0184609_100738205	3300018076	Groundwater Sediment	LLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR
Ga0184627_104267741	3300018079	Groundwater Sediment	MRAVETLTLLLAATVLFMWAIFAHPTPEERSRLHDSMGQSTGIAWR
Ga0184629_100224096	3300018084	Groundwater Sediment	VRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAWR
Ga0184629_104884311	3300018084	Groundwater Sediment	VRAVETLTLLLAATVLFMWAILAHPTPEERSRLQDSMGQSTGIAWR
Ga0190265_102011384	3300018422	Soil	MRLVETLALLLAATVLFMWVILAHPTPDERARLHDAMGQSTGIAWR
Ga0190265_106482232	3300018422	Soil	MLLLAATVLFMWVILAHPTPDERARLHDAMGQSTGIAWR
Ga0190265_114464722	3300018422	Soil	LTLLLAATVLFMWVILAHPTADEQARLQDSMGQSTGVAWR
Ga0190265_120941692	3300018422	Soil	IVRVVEALTLLLVATVLFMWVIFAHPTQEERARPHDSMGQSTGIMWR
Ga0190265_135008562	3300018422	Soil	VTLLLAATVLFMWAIFAHPTPEERARLHDSMGASTGIAWR
Ga0190272_100521104	3300018429	Soil	MRAVETLTLLLAATVLFMWAIFAHPTPDEQARVYDSMGQSTGVAWR
Ga0190272_108815801	3300018429	Soil	VRAVETLTLLLAATVLFMWAIFAHPTPDEQGRLYDSMGPSTGIAWR
Ga0190272_115576691	3300018429	Soil	MRAVEVLTLLLAATVLFMWVILAHPTPDEQARVYDSMGQSTGIAWR
Ga0187894_103646902	3300019360	Microbial Mat On Rocks	MRLVETLALLLAATVLFMWVILAHPTQDERARLHDSMGQSTGIAWR
Ga0190264_108953852	3300019377	Soil	MRFVETVTLLLMVTVLFMWVIFAHPTPDERARLHDSMGASTGIAWR
Ga0190264_115967212	3300019377	Soil	MLLAATVLFMWVILAHPTPDERARLHDAMGQSTGIAWR
Ga0187892_1000335915	3300019458	Bio-Ooze	MRAAETLTVLLAAIVLFMWAILAHSTPDERARLHDSMGPSTGIAWR
Ga0193707_10924861	3300019881	Soil	AVWRGSIVRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR
Ga0193725_10950771	3300019883	Soil	LTLLLVAMVLFMWVIFAHPTPDEQSRRYDSMGPSTGIAWR
Ga0193725_11488022	3300019883	Soil	RAVETLTVLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAWR
Ga0193743_10748502	3300019889	Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR
Ga0179594_101804763	3300020170	Vadose Zone Soil	MRVIETLTLLLAATALFMWVIFAHPTPDERTRVYDSM
Ga0210378_1000249615	3300021073	Groundwater Sediment	VRVVETLMLLLAATVLFMWVIFAHPTPDEQARVYDSMGKSTGIAWR
Ga0210378_100360121	3300021073	Groundwater Sediment	MRAVETLTLLLVVTVLFMWAIFAHPTPDERARLHDSMGQSTGIAWR
Ga0210378_104034482	3300021073	Groundwater Sediment	VRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGASTGIAWR
Ga0210382_102206681	3300021080	Groundwater Sediment	LTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGIAWR
Ga0210382_102771272	3300021080	Groundwater Sediment	VRAVETLTLLLAATVLFMWAIFAHPTPDEQGRLYDSMGQSTGIAWR
Ga0210379_100590984	3300021081	Groundwater Sediment	VRAVETLTLLLAATVLFMWAIFAHPTPEERARLHDSMGQSTGIAWR
Ga0210379_102213693	3300021081	Groundwater Sediment	LARSTLAVWRGSIVRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAWR
Ga0210404_100048787	3300021088	Soil	MRGVETLTLVLIATVLFMWVVLGHSTPDERARLQDSMGQSTGIAWR
Ga0210408_110965521	3300021178	Soil	LLMATVLFMRVIFAPPTPDGRTRLHDSMGASTGIGWR
Ga0193719_100477572	3300021344	Soil	VRAVETLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR
Ga0210384_100955652	3300021432	Soil	MRGVETLMLVLIVTVLFMWVVLGHSTPDEQARLYDSMGDSTGIAWR
Ga0210384_101220444	3300021432	Soil	MRGVETLMLVLIATVLFMWVVLGHSTPDERARLYDSMGDSTGIAWR
Ga0224452_10312282	3300022534	Groundwater Sediment	LTLLLAATVLFMWVIFAHPTPDERARLHDSMGSSTGIAWR
Ga0224452_10497533	3300022534	Groundwater Sediment	VRAVETLTLLLAATVLFMWVILAHPTPEERARLHDSMGASTGIAWR
Ga0224452_11919822	3300022534	Groundwater Sediment	TLLLAATVLFMWAIFAHPTPDERARVYDSMGKSTGIAWR
Ga0222623_100627271	3300022694	Groundwater Sediment	GSIMRAVETLTLLLAATVLFMWAIFAHPTPEERSRLQDSMGQSTGIAWR
Ga0222623_101730331	3300022694	Groundwater Sediment	IVRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGQSTGIAWR
Ga0222623_102931251	3300022694	Groundwater Sediment	VRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIA
Ga0222623_104261781	3300022694	Groundwater Sediment	VRAVETLTLLLAATVLFMWAIFAHPTPEERSRLHDSMGQSTGI
Ga0137417_12394621	3300024330	Vadose Zone Soil	AFWRGSIVRAVEKLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR
Ga0209640_1000087919	3300025324	Soil	MRAAETLTLLLAATVLFMWAVFAHPTPDERARLYDSMGSSTGIAWR
Ga0209640_100794074	3300025324	Soil	MRVVETLTLLLAATVVFMWVIFAHPTPDERARLHDSMGASTGIAWR
Ga0209640_105501352	3300025324	Soil	VRAVEALMLLLAATVLFMWAIFAHPTPDERARLHDSMGQSTGIAWR
Ga0210094_10256921	3300025549	Natural And Restored Wetlands	VQRVVETLTLLLVATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR
Ga0207684_100794584	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VRAAETVTVVLTAIVLFMWAVLAHSTPDERARLHDSMGSSTGIAWR
Ga0207684_116557281	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GHRGTWHAGQREGAMRSVETLTLVLIATVLFMWVVLGHSTPEERARLQDSMGQSTGIAWR
Ga0207707_111603601	3300025912	Corn Rhizosphere	MRAVETLTLLLAATVLFMWVILAHPTPDERARLYDSMGSSTGVAWR
Ga0207660_101784903	3300025917	Corn Rhizosphere	MRLVEALALLLVATVLFMWVILAHPTPDERARLHDSMGQSTGMAWR
Ga0207681_104216121	3300025923	Switchgrass Rhizosphere	MRAVETLTLLLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR
Ga0207712_102140901	3300025961	Switchgrass Rhizosphere	GIALLLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR
Ga0207639_116970141	3300026041	Corn Rhizosphere	LLAGTVLFMWVILAHPTPDERARLYDSMGSSTGVAWR
Ga0207708_110225971	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRAVETLTLLLAGTVLFMWVILAHPTPDERARLYDSMGS
Ga0209438_12067761	3300026285	Grasslands Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDS
Ga0209131_13691671	3300026320	Grasslands Soil	VRVLETLTVLLVATVLFMWVILAHPTPDERTRLHDSMG
Ga0257166_10333651	3300026358	Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDEQGRLYDSMGPSTGMAWR
Ga0257181_10974342	3300026499	Soil	LTLVLAATVLFMWVIFAHPTPEERARLHDSMGPSTGIAWR
Ga0256867_101162802	3300026535	Soil	MRLVETLALLLAATVLFMWAIFAHPTPEERSRLYDSMGSSTGIAWR
Ga0256867_102267463	3300026535	Soil	VETLTLLLAATVLFMWAIFAHPTPEERSRLYDSMGSSTGIAWR
Ga0209648_101124821	3300026551	Grasslands Soil	VRVVETLPLLLVATVLFMWVIFAPPTPDERARLHDSMGASTGIAWR
Ga0256866_10474522	3300027650	Soil	MRLVETLTLLLAATVLFMWAIFAHPTPEERSRLYDSMGSSTGIAWR
Ga0209388_11740602	3300027655	Vadose Zone Soil	VRVVETLTLLLVATVLFMWVIFAPPTPDERARLHDSMGAS
Ga0209592_13473191	3300027731	Freshwater Sediment	MRLVETLALLLAATVLFIWVILAHPTADERARLHDSMGQSTGIAWR
Ga0209726_102460963	3300027815	Groundwater	MRAVETLTLMLVATVLFMWVIFAHPTPDEQARLHDSMGQSTGIAWR
Ga0209068_100019359	3300027894	Watersheds	MRGVETLMLVLIATVLFMWVVLGHSTPDERARLHDSMGDSTGIAWR
Ga0209068_100477515	3300027894	Watersheds	REGAMRGVETLMLVLIATVLFMWVVLGHSTPDERARLHDSIGDSTGIAWR
Ga0209069_100784954	3300027915	Watersheds	TLMLVLIATVLFMWVVLGHSTPDERARLHDSIGDSTGIAWR
Ga0209526_100476962	3300028047	Forest Soil	MRGVETLMLVLIATVLFMWVVLGHSTSDERARLHDSMGQSTGIAWR
Ga0268265_113659152	3300028380	Switchgrass Rhizosphere	VRVVETLTLLLVATALFMWVILAHPTPDEQGRLYDSMGPSTGIAWR
Ga0137415_101071172	3300028536	Vadose Zone Soil	VRVVETLTLLLVATVLFMWVIFAHPTPDERGRLYDSMGPSTGIAWR
Ga0137415_110244441	3300028536	Vadose Zone Soil	MRGVETSTLVLIATVLFTWVVLGHSTPDERARLQDSMGQSTGIAWR
Ga0307311_102344832	3300028716	Soil	LVATVLFMWVIFAHPTPDEQGRLYDSMGSSTGIAWR
Ga0307504_100944671	3300028792	Soil	MRAVETLTLLLAATVLFMWAIFAHPTPEERARLYDSMGVSTGIAWR
Ga0307504_102714392	3300028792	Soil	MRGGVETLMLVLIATVLFMWVVLGHSTPDERARLHDSMGQSTGIAWR
Ga0307287_102968893	3300028796	Soil	WRGSIVRAVETLTLLLVAMVLFMWVIFAHPTPDEQSRLYDSMGPSTGIAWR
Ga0307281_100066111	3300028803	Soil	LLLAATVLFMWVIFAHPTPEERSRLHDSMGQSTGIAWR
Ga0307281_100077663	3300028803	Soil	VRAVETLTLLLAATVLFMWAIFAHPTPEERARLHDSMGASTGIAWR
Ga0307281_102436621	3300028803	Soil	VRAVETLTLLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAW
Ga0307305_105126951	3300028807	Soil	MRAVETLTLLLAATVLFMWVILAHPTPDEQARVYDSMGQ
Ga0307296_102528303	3300028819	Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR
Ga0307310_103639993	3300028824	Soil	LTLLLAATVLFMWAILAHPTPEERARLHDSMGQSTGIAWR
Ga0299907_109808401	3300030006	Soil	PCGAGWRGPLMRLVETLALLLAATVLFIWVILAHPTADERARLHDSMGQSTGIAWR
Ga0268386_1000531515	3300030619	Soil	MRAVETLTLLLAATVLFMWVIFAHPTPDEQARVYDSMGQSTGIAWR
Ga0268386_100768201	3300030619	Soil	MRAVETLTLLLAATVLFMWVIFAHPTPDEQARVYDSMGQSTG
Ga0268386_100823653	3300030619	Soil	MRVVETLTLLLAATVLFMWAIFAHPTPDERARLYDSMGQSTGIAWR
Ga0268386_103122345	3300030619	Soil	RLGETLALLLAATVLFMWAIFAHPTPEERSRLYDSMGSSTGIAWR
Ga0268386_106232671	3300030619	Soil	RCRPCGAGWRGPLMRLVETLALLLAATVLFIWVILAHPTADERARLHDSMGQSTGIAWR
Ga0268386_108768561	3300030619	Soil	MRAVETLTLVLAATVLFMWVIFAHPTPDEQARVYDSMGQSTGIAWR
Ga0308197_103237491	3300031093	Soil	VRAVETLTLLLVATVLFMWVIFAHPTPDERGRLYDSMGPSTGIAWR
(restricted) Ga0255310_100160131	3300031197	Sandy Soil	MRVVETLTLLLVATVLFMWVIFAHPTPGERARLHDSMGS
Ga0299913_100202868	3300031229	Soil	MRLVETLALLLAATVLFIWVILARPTADERARLHDSMG
(restricted) Ga0255334_10183042	3300031237	Sandy Soil	MRVVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGSSTGIAWR
Ga0307469_102560634	3300031720	Hardwood Forest Soil	MRLVETLALLLAATVLFMWVILAHPTPDERARLHDSMGQSTGIAWR
Ga0307471_1004856441	3300032180	Hardwood Forest Soil	MRGVETLTLVLIATVLFMWVVLGHSTPEERARLQDSMGQSTGIAWR
Ga0316628_1041123021	3300033513	Soil	MRVVETLTLLLVAAVLFMWVIFAHPTSDERARLYDSMGQSTGIAWR
Ga0364924_182746_101_241	3300033811	Sediment	MRAVETLALLLAATVLFMWAILAHPTPEERARLHDSMGPSTGIAWR
Ga0370495_0025657_748_888	3300034257	Untreated Peat Soil	MRAVETLTLVLVATVLFMWVVLAHPTPDEQARVYDSMGQSTGIAWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters