Metagenome / Metatranscriptome Family F035659

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F035659
Family Type	Metagenome / Metatranscriptome
Number of Sequences	171
Average Sequence Length	49 residues
Representative Sequence	MRPLAHHAGEQGLAPLLLLLGSGGVPLMVAIGRARLAAARAKLTRARRRP
Number of Associated Samples	113
Number of Associated Scaffolds	171

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.47 %
% of genes near scaffold ends (potentially truncated)	36.26 %
% of genes from short scaffolds (< 2000 bps)	81.29 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.363 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.485 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (29.825 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.69% β-sheet: 0.00% Coil/Unstructured: 42.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 171 Family Scaffolds
PF05694	SBP56	56.14
PF03992	ABM	14.04
PF04229	GrpB	2.92
PF04978	DUF664	2.92
PF13359	DDE_Tnp_4	1.75
PF12680	SnoaL_2	1.75
PF01408	GFO_IDH_MocA	1.75
PF01734	Patatin	1.17
PF00106	adh_short	0.58
PF00501	AMP-binding	0.58
PF00196	GerE	0.58
PF13592	HTH_33	0.58
PF05331	DUF742	0.58
PF01740	STAS	0.58
PF01850	PIN	0.58
PF09221	Bacteriocin_IId	0.58
PF00296	Bac_luciferase	0.58
PF13700	DUF4158	0.58
PF03704	BTAD	0.58
PF01872	RibD_C	0.58
PF00069	Pkinase	0.58
PF01548	DEDD_Tnp_IS110	0.58
PF01568	Molydop_binding	0.58
PF01464	SLT	0.58

COG ID	Name	Functional Category	% Frequency in 171 Family Scaffolds
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	2.92
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.34
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.17
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.17
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.17
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.58
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.58
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.58
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.58
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.58
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.58

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.36 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.36 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.36 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.46 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.46 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.18 %
Unclassified	root	N/A	21.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.64 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4.68 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.17 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.58 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.64 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	4.09 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.58 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.58 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.64 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	4.09 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.17 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.58 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.64 %
Rhodococcus ruber	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	2.34 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.17 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.58 %
Mycobacterium xenopi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium xenopi	0.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.58 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.64 %
Rhodococcus ruber	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	2.34 %
Rhodococcus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	1.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.17 %
Mycobacterium xenopi 4042	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium xenopi → Mycobacterium xenopi 4042	0.58 %
Streptomyces sp. SID6041	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. SID6041	0.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.58 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.58 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106218558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300003373\|JGI25407J50210_10012008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2218	Open in IMG/M
3300003373\|JGI25407J50210_10022041	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300003373\|JGI25407J50210_10052665	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300003373\|JGI25407J50210_10065171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	912	Open in IMG/M
3300003373\|JGI25407J50210_10175897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300004463\|Ga0063356_102848762	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300005457\|Ga0070662_100332414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1242	Open in IMG/M
3300005562\|Ga0058697_10009171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3234	Open in IMG/M
3300005562\|Ga0058697_10091713	Not Available	1244	Open in IMG/M
3300005562\|Ga0058697_10130004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1079	Open in IMG/M
3300005562\|Ga0058697_10163150	Not Available	982	Open in IMG/M
3300005562\|Ga0058697_10291034	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005562\|Ga0058697_10581169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300005562\|Ga0058697_10760546	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005578\|Ga0068854_102056880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	527	Open in IMG/M
3300005981\|Ga0081538_10073486	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300005981\|Ga0081538_10303561	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300006049\|Ga0075417_10009809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3506	Open in IMG/M
3300006049\|Ga0075417_10012174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3230	Open in IMG/M
3300006844\|Ga0075428_101598227	Not Available	682	Open in IMG/M
3300006844\|Ga0075428_102316029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	552	Open in IMG/M
3300006845\|Ga0075421_101745164	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300006847\|Ga0075431_101956832	Not Available	542	Open in IMG/M
3300006918\|Ga0079216_10957657	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300009100\|Ga0075418_12022365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300009147\|Ga0114129_10048988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5938	Open in IMG/M
3300009147\|Ga0114129_11365072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	876	Open in IMG/M
3300009156\|Ga0111538_11782805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300009789\|Ga0126307_10488346	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300009837\|Ga0105058_1193466	Not Available	506	Open in IMG/M
3300009840\|Ga0126313_10115944	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300009840\|Ga0126313_10345912	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300009840\|Ga0126313_11162468	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300009840\|Ga0126313_11227500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300010036\|Ga0126305_10034081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2797	Open in IMG/M
3300010038\|Ga0126315_10113047	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300010038\|Ga0126315_10191427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1228	Open in IMG/M
3300010038\|Ga0126315_10376317	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300010042\|Ga0126314_10053825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2624	Open in IMG/M
3300010044\|Ga0126310_10576022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
3300010045\|Ga0126311_10048412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2719	Open in IMG/M
3300010145\|Ga0126321_1187474	Not Available	512	Open in IMG/M
3300010166\|Ga0126306_10009080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6216	Open in IMG/M
3300010395\|Ga0058701_10701708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M
3300012201\|Ga0137365_10105437	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300012204\|Ga0137374_10010203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11053	Open in IMG/M
3300012204\|Ga0137374_10670803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	782	Open in IMG/M
3300012206\|Ga0137380_10129451	All Organisms → cellular organisms → Bacteria	2305	Open in IMG/M
3300012209\|Ga0137379_10643366	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300012350\|Ga0137372_10604435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300012354\|Ga0137366_11020956	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012355\|Ga0137369_10674808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	712	Open in IMG/M
3300012359\|Ga0137385_10106250	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300012360\|Ga0137375_11362565	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300012941\|Ga0162652_100043345	Not Available	714	Open in IMG/M
3300013306\|Ga0163162_11600353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	743	Open in IMG/M
3300013307\|Ga0157372_11874455	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300014487\|Ga0182000_10068502	Not Available	1113	Open in IMG/M
3300014487\|Ga0182000_10332175	Not Available	647	Open in IMG/M
3300014487\|Ga0182000_10389011	Not Available	614	Open in IMG/M
3300015371\|Ga0132258_10128653	All Organisms → cellular organisms → Bacteria	6034	Open in IMG/M
3300017792\|Ga0163161_10315878	Not Available	1234	Open in IMG/M
3300017965\|Ga0190266_10174386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	997	Open in IMG/M
3300017997\|Ga0184610_1234950	Not Available	611	Open in IMG/M
3300017997\|Ga0184610_1261713	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300018000\|Ga0184604_10124252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	826	Open in IMG/M
3300018027\|Ga0184605_10369796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300018028\|Ga0184608_10094483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1242	Open in IMG/M
3300018028\|Ga0184608_10143351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium xenopi → Mycobacterium xenopi 4042	1026	Open in IMG/M
3300018028\|Ga0184608_10493501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300018051\|Ga0184620_10032307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1382	Open in IMG/M
3300018052\|Ga0184638_1007928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3533	Open in IMG/M
3300018052\|Ga0184638_1074433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1243	Open in IMG/M
3300018054\|Ga0184621_10346183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300018066\|Ga0184617_1021608	Not Available	1437	Open in IMG/M
3300018072\|Ga0184635_10103718	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300018072\|Ga0184635_10110416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	1090	Open in IMG/M
3300018072\|Ga0184635_10224453	Not Available	747	Open in IMG/M
3300018073\|Ga0184624_10020085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2481	Open in IMG/M
3300018073\|Ga0184624_10267518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M
3300018074\|Ga0184640_10116458	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300018076\|Ga0184609_10093804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1341	Open in IMG/M
3300018081\|Ga0184625_10047045	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300018081\|Ga0184625_10212790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	1013	Open in IMG/M
3300018422\|Ga0190265_10453148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1390	Open in IMG/M
3300018422\|Ga0190265_13261463	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300018432\|Ga0190275_10692016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300018465\|Ga0190269_10797996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300018466\|Ga0190268_10256687	Not Available	1010	Open in IMG/M
3300018476\|Ga0190274_10007091	All Organisms → cellular organisms → Bacteria	6835	Open in IMG/M
3300019279\|Ga0184642_1001605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300019377\|Ga0190264_10494202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300019377\|Ga0190264_12183229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300021073\|Ga0210378_10349691	Not Available	551	Open in IMG/M
3300021078\|Ga0210381_10118180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	876	Open in IMG/M
3300021078\|Ga0210381_10269094	Not Available	609	Open in IMG/M
3300022534\|Ga0224452_1006576	All Organisms → cellular organisms → Bacteria	2889	Open in IMG/M
3300022694\|Ga0222623_10008883	All Organisms → cellular organisms → Bacteria	3627	Open in IMG/M
3300022694\|Ga0222623_10088618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300022694\|Ga0222623_10201443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	772	Open in IMG/M
3300022694\|Ga0222623_10308333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300022756\|Ga0222622_10191603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1350	Open in IMG/M
3300022756\|Ga0222622_10806981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300025933\|Ga0207706_10159407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1984	Open in IMG/M
3300025949\|Ga0207667_11970728	Not Available	545	Open in IMG/M
3300026118\|Ga0207675_100186852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1986	Open in IMG/M
3300027056\|Ga0209879_1031828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	874	Open in IMG/M
3300027718\|Ga0209795_10146627	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300027718\|Ga0209795_10189578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300027809\|Ga0209574_10025696	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300027873\|Ga0209814_10006249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4572	Open in IMG/M
3300027909\|Ga0209382_10378250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. SID6041	1581	Open in IMG/M
3300028592\|Ga0247822_10019096	All Organisms → cellular organisms → Bacteria	4646	Open in IMG/M
3300028707\|Ga0307291_1096841	Not Available	734	Open in IMG/M
3300028707\|Ga0307291_1145185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300028708\|Ga0307295_10175104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300028708\|Ga0307295_10258929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300028711\|Ga0307293_10014660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2242	Open in IMG/M
3300028711\|Ga0307293_10108506	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300028713\|Ga0307303_10121116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300028716\|Ga0307311_10019769	Not Available	1667	Open in IMG/M
3300028716\|Ga0307311_10106674	Not Available	786	Open in IMG/M
3300028717\|Ga0307298_10004780	All Organisms → cellular organisms → Bacteria	3242	Open in IMG/M
3300028717\|Ga0307298_10130628	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300028719\|Ga0307301_10027348	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300028722\|Ga0307319_10069520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1114	Open in IMG/M
3300028744\|Ga0307318_10007956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3414	Open in IMG/M
3300028744\|Ga0307318_10213578	Not Available	668	Open in IMG/M
3300028744\|Ga0307318_10258979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300028754\|Ga0307297_10062254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1171	Open in IMG/M
3300028771\|Ga0307320_10243208	Not Available	708	Open in IMG/M
3300028778\|Ga0307288_10065772	Not Available	1273	Open in IMG/M
3300028782\|Ga0307306_10162419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300028793\|Ga0307299_10025653	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300028793\|Ga0307299_10057907	Not Available	1430	Open in IMG/M
3300028796\|Ga0307287_10154692	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300028796\|Ga0307287_10217534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300028814\|Ga0307302_10025339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2707	Open in IMG/M
3300028875\|Ga0307289_10125244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1053	Open in IMG/M
3300028876\|Ga0307286_10036775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1631	Open in IMG/M
3300028878\|Ga0307278_10013089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3866	Open in IMG/M
3300028878\|Ga0307278_10016151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3462	Open in IMG/M
3300028878\|Ga0307278_10018069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3269	Open in IMG/M
3300028878\|Ga0307278_10083735	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300028880\|Ga0307300_10012818	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300028880\|Ga0307300_10041439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1283	Open in IMG/M
3300030499\|Ga0268259_10073018	Not Available	733	Open in IMG/M
3300030514\|Ga0268253_10301394	Not Available	555	Open in IMG/M
3300031092\|Ga0308204_10031691	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300031114\|Ga0308187_10163356	Not Available	753	Open in IMG/M
3300031114\|Ga0308187_10388681	Not Available	548	Open in IMG/M
3300031421\|Ga0308194_10075960	Not Available	919	Open in IMG/M
3300031548\|Ga0307408_100747376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	883	Open in IMG/M
3300031548\|Ga0307408_100831898	Not Available	840	Open in IMG/M
3300031731\|Ga0307405_10139833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1686	Open in IMG/M
3300031731\|Ga0307405_10340777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	1152	Open in IMG/M
3300031731\|Ga0307405_10779565	Not Available	799	Open in IMG/M
3300031824\|Ga0307413_11475049	Not Available	601	Open in IMG/M
3300031852\|Ga0307410_10167257	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300031901\|Ga0307406_11573816	Not Available	580	Open in IMG/M
3300031903\|Ga0307407_10222582	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300031903\|Ga0307407_10494389	Not Available	895	Open in IMG/M
3300031911\|Ga0307412_11239990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	669	Open in IMG/M
3300032126\|Ga0307415_101454456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	654	Open in IMG/M
3300032159\|Ga0268251_10321361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300032159\|Ga0268251_10409466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	589	Open in IMG/M
3300032180\|Ga0307471_100596021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp.	1264	Open in IMG/M
3300033550\|Ga0247829_10155736	Not Available	1783	Open in IMG/M
3300034172\|Ga0334913_075610	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.25%
Host-Associated	Host-Associated	32.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.95%
Plants	Host-Associated → Plants	32.75%
Aquatic	Environmental → Aquatic	19.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.37%
Sediment	Environmental → Aquatic → Sediment	16.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.79%
Phylloplane	Host-Associated → Plants → Phylloplane	8.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.09%
Roots	Host-Associated → Plants → Roots	4.09%
Freshwater	Environmental → Aquatic → Freshwater	2.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.58%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	16.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.62%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	8.19%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.51%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.34%
Sand	Environmental → Terrestrial → Soil → Sand	1.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.17%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.58%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.58%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	16.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.62%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	8.19%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	4.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.34%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.17%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.17%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.58%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.58%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.58%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.58%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	27.49%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	12.28%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	8.19%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.02%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.09%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	4.09%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.17%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.17%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.58%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.58%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.58%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.58%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.58%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.58%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.58%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.58%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1062185582	3300000956	Soil	MRPLAHHAGEQALAPLLLLLGGGGVSLLVAIGRARLAAARAKLTRKQGSRRR*
JGI25407J50210_100120083	3300003373	Tabebuia Heterophylla Rhizosphere	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRARRRP*
JGI25407J50210_100220413	3300003373	Tabebuia Heterophylla Rhizosphere	MRPLAHHAGEQALAPLLLLLGGGGVPLLVAIGRARLAAARAKLTRKQGSRRR*
JGI25407J50210_100526652	3300003373	Tabebuia Heterophylla Rhizosphere	MTMRLLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR*
JGI25407J50210_100651712	3300003373	Tabebuia Heterophylla Rhizosphere	MPPLLAHHAGEQSLATLLLLGSSGALSVVVAIGRAQLAAARAKLTRKRRVYT*
JGI25407J50210_101758972	3300003373	Tabebuia Heterophylla Rhizosphere	MRPLAHHAGEQGLAPLLLLLGSGGVPLMLAIGRARLAAARAKLTRGTRRQ*
Ga0063356_1028487622	3300004463	Arabidopsis Thaliana Rhizosphere	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARTRLAAARAKLTRTRRP*
Ga0070662_1003324142	3300005457	Corn Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRR*
Ga0058697_100091714	3300005562	Agave	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARRRP*
Ga0058697_100917132	3300005562	Agave	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRTRRP*
Ga0058697_101300042	3300005562	Agave	MDLVVAHHAGEQALAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR*
Ga0058697_101631501	3300005562	Agave	LLHQLTTMRPLAHHAGEQGLAPLLLLLGGGGVPLMVAIGRARLAAARAKLTRPRRRP*
Ga0058697_102910342	3300005562	Agave	MRPLAHHAGEPGLAPLLLLLGSGGVPLMVAIGRARLAAARAKLTRPRRRP*
Ga0058697_105811692	3300005562	Agave	MRPLAHHLGEDSLLNLLLVGGAGLSLMVVQGRARLAAARARLT
Ga0058697_107605462	3300005562	Agave	MHPIVAHHAGEQGLAPLLLLSSGGVPLVMAIGRARLAAARAKLTRARRKP*
Ga0068854_1020568802	3300005578	Corn Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRP*
Ga0081538_100734863	3300005981	Tabebuia Heterophylla Rhizosphere	MAPLAHHAGELGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRTRRP*
Ga0081538_103035611	3300005981	Tabebuia Heterophylla Rhizosphere	MRPIAHHTAEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR*
Ga0075417_100098094	3300006049	Populus Rhizosphere	MHPIAHHLGEQALAPLLLLGSGGVPLMVAIGRARLAATRAKLTRPRKQP*
Ga0075417_100121741	3300006049	Populus Rhizosphere	MRPLAHHAGEQGLAPLLLLLLGGGGVPLLVAIGRARLAA
Ga0075428_1015982271	3300006844	Populus Rhizosphere	MRPLAHHAGEQGLAPLLLLLLGGGGVPLLVAIGRARLAAARAKLTRKQGSRRR*
Ga0075428_1023160292	3300006844	Populus Rhizosphere	MRPLAHHLGEDSLVNLLLVGGTGLSLMVVEGRARLAAARARLT
Ga0075421_1017451642	3300006845	Populus Rhizosphere	MHPLAHHMGEDSLANLLLFGGSWLSVAAVVGRARLAAARAKLTRARRRP*
Ga0075431_1019568322	3300006847	Populus Rhizosphere	MHPLAHHLSEDSLLNLLLISGTGLSLMVVEGRARLAAARA
Ga0079216_109576572	3300006918	Agricultural Soil	MAPLAHHAGEQGLAPLLLLLGSGGVTLLVAIARARLAAARAKLTRTRRP*
Ga0075418_120223652	3300009100	Populus Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSVLVTIGRAQLAAARAKLTRARRRP*
Ga0114129_100489882	3300009147	Populus Rhizosphere	LAHHAGEQGLAPLLLLLGGGGVPLLVAIGRARLAAARAKLTRKQGSRRR*
Ga0114129_113650721	3300009147	Populus Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSALVAIGRAQLAAARAKLTRARRRP*
Ga0111538_117828052	3300009156	Populus Rhizosphere	MHPLAHHLGEDSLVNALLLACSGLSVLVAIGRTQLAAARAKLTRARRRRGSSASSGQ
Ga0126307_104883462	3300009789	Serpentine Soil	MRPLAHHLGEESLAPLLLLASGGGLSLLVAIGRARLAAARAKLTRARRRP*
Ga0105058_11934662	3300009837	Groundwater Sand	MHPIAHHLGEQALAPLLLLGGGGVPLMVAIGRARLATARAKLTRARRKP*
Ga0126313_101159442	3300009840	Serpentine Soil	MHPIAHHLGEQGLAPLLLLLLLGGGGVPLMMAVGRARLAAARAKLTRPRRRP*
Ga0126313_103459121	3300009840	Serpentine Soil	MTPSAHHLGEESLAPLLLLGSGGGLSLLVAVGRTRLAAAHTRLARLLRRERV*
Ga0126313_111624681	3300009840	Serpentine Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRKQGARRR*
Ga0126313_112275002	3300009840	Serpentine Soil	MHPIAHHAGEQALAPLLLLAGGGLPLIVAIGRTQLAAVRTSLPSKQGSTAEADRWMPASL
Ga0126305_100340811	3300010036	Serpentine Soil	MRLLAHHAGEQGLAPLLLLLGSGGVSLIVAIGRARLAAARARLTRVIARDQALGGG
Ga0126315_101130473	3300010038	Serpentine Soil	MRPLAHHLGEESLAPLLLLASGGGLSLLVAIGRARLAAARAKLTRPRRRP*
Ga0126315_101914273	3300010038	Serpentine Soil	MHPLAHHLGEDSLVNALLLGSGGLSVMVAIGRAQLAAARAKLTRARRRP*
Ga0126315_103763172	3300010038	Serpentine Soil	MHPIAHHLGEQGLAPLLLLLLGGGGVPLMMAVGRARLAAARAKLTRPRRRP*
Ga0126314_100538254	3300010042	Serpentine Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRPRRRP*
Ga0126310_105760222	3300010044	Serpentine Soil	LGEQALAPLLLLGGGGVPLMVAIGRARLAAARARLTRKLGSRRRG*
Ga0126311_100484123	3300010045	Serpentine Soil	MHPIAHHLGEQALAPLLLLGGGGVPLMVAIGRARLAAARARLTRKLGSRRRG*
Ga0126321_11874743	3300010145	Soil	MAPLAHHAGEQGLAPLLLLLGSGGVPLLAAIARAWLAAARAKLTRARRRP*
Ga0126306_1000908011	3300010166	Serpentine Soil	MRPLAHHAGEQGLAPLLLLLGGGGVPLLVAIGRARLAAARATLTRKQGARRR*
Ga0058701_107017082	3300010395	Agave	MHPIVAHHAGEQGLAPLLLLLSSGGVPLAVAIGRARLAAARAKLTRARR
Ga0137365_101054372	3300012201	Vadose Zone Soil	MAPLAHHAGEQGLAPLLLLLLGGGVPLMMAIGRARLAAARAKLTRPRRRP*
Ga0137374_1001020311	3300012204	Vadose Zone Soil	MRPLAHHAGEQGLAPLLLLLVSGGVPVMVAVGRARLAAVRAKLTRARRRP*
Ga0137374_106708031	3300012204	Vadose Zone Soil	MTPPVAHHLGEESIAPLLLLGSGGGLSLLVTIGRARLAAARAKLT
Ga0137380_101294512	3300012206	Vadose Zone Soil	MRPLAHHAGEQGLVPLLLLLLGGGGVSLMVAIGRARLAAARAKLTRPRRRP*
Ga0137379_106433661	3300012209	Vadose Zone Soil	LLLLHELTTMRPLAHHAGEQGLVPLLLLLLGGGGVSLMVAIGRARLAAARAKLTRPRRRP
Ga0137372_106044352	3300012350	Vadose Zone Soil	MRPLAHHAGEQGLAPLLLLLLGGGGIPLMVAIGRARLAAARAKLTRPRRRP*
Ga0137366_110209562	3300012354	Vadose Zone Soil	MRPLAHHAGEQGLVPLLLLLLGGGGVSLMVTIGRARLAAARAKLTRPRRRP*
Ga0137369_106748082	3300012355	Vadose Zone Soil	MTPPVAHHLGEESIAPLLLLGSGGGLSLLVTIGRARLAAARAKLTRPRRRP*
Ga0137385_101062502	3300012359	Vadose Zone Soil	LAHHAGEQGLVPLLLLLLGGGGVSLMVAIGRARLAAARAKLTRPRRRP*
Ga0137375_113625652	3300012360	Vadose Zone Soil	TPPVAHHLGEESIAPLLLLGSGGGLSLLVTIGRARLAAARAKLTRPRRRP*
Ga0162652_1000433452	3300012941	Soil	MGEDSLVNLLLFGGSWLSVAAVVGRARLAAARAKLTRARRRP*
Ga0163162_116003532	3300013306	Switchgrass Rhizosphere	MAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRP*
Ga0157372_118744552	3300013307	Corn Rhizosphere	MHPLAHHLGEDSLVNALLLACSGLSVLVAISRAQLAAARAKLTRARRRR*
Ga0182000_100685023	3300014487	Soil	MDPVVAHHAGEQALAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR*
Ga0182000_103321752	3300014487	Soil	MHPIVAHHAGEQGLAPLLLLLSSGGVPLAVAIGRARLAAARAKLTRARRRP*
Ga0182000_103890112	3300014487	Soil	LAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQG
Ga0132258_101286539	3300015371	Arabidopsis Rhizosphere	MHPLAHHLGEDSLVNALLLAGSGLSVLVAIGRAQLAAARAKLTRARRRR*
Ga0163161_103158782	3300017792	Switchgrass Rhizosphere	MHPLAHHLGEDSLVNALLLACSGLSVLVAIGRAQLAAARAKLTRARRRP
Ga0190266_101743862	3300017965	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRKQGARRR
Ga0184610_12349502	3300017997	Groundwater Sediment	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0184610_12617132	3300017997	Groundwater Sediment	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARRRP
Ga0184604_101242521	3300018000	Groundwater Sediment	MTMRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLIRKQGARRR
Ga0184605_103697962	3300018027	Groundwater Sediment	MRPLAHHAGEQGLAPLLLLGSGGVPLLVAIGRARLAAARAKLIRKQGARRR
Ga0184608_100944831	3300018028	Groundwater Sediment	QLTTMRPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLIRKQGARRR
Ga0184608_101433511	3300018028	Groundwater Sediment	MRPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLA
Ga0184608_104935012	3300018028	Groundwater Sediment	MGEDALVNLLLFGGSWLSVAAVVGRARLAAARAKLTRARRRP
Ga0184620_100323072	3300018051	Groundwater Sediment	MHPIAHHLGEQALAPLLLLGSGGVSLLVAIGRARLATARAKLTRKQGARRR
Ga0184638_10079284	3300018052	Groundwater Sediment	MRPLAHHAGEQFLAPLLLLGGGWISLAAAAGRARLAATRDRLTRRKQDSRR
Ga0184638_10744332	3300018052	Groundwater Sediment	MRPLAHHAGEQALAALLLGGSGLSLMVAIGRARLAAARSRLTRRPQRPEEEPRG
Ga0184621_103461832	3300018054	Groundwater Sediment	LAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0184617_10216083	3300018066	Groundwater Sediment	RPLAHHAGEQGLAPLLLLLVSGGVPVMVAVGRARLAAVRAKLTRARRRP
Ga0184635_101037183	3300018072	Groundwater Sediment	RLQRLLLPHQLTMHPLAHHMGEDSLVNLLLFGGSWLSVAAVVGRARLAAARAKLTRARRR
Ga0184635_101104162	3300018072	Groundwater Sediment	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRR
Ga0184635_102244531	3300018072	Groundwater Sediment	MHPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0184624_100200852	3300018073	Groundwater Sediment	MRPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0184624_102675182	3300018073	Groundwater Sediment	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRAGRRR
Ga0184640_101164583	3300018074	Groundwater Sediment	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRERLAAARAKLTRARRRP
Ga0184609_100938042	3300018076	Groundwater Sediment	LAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLIRKQGARRR
Ga0184625_100470453	3300018081	Groundwater Sediment	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAGRAKLTRTRRP
Ga0184625_102127901	3300018081	Groundwater Sediment	MRPLAHHLGEDSLVNLLLVGGAGLSLMVVQGRARLAAARAR
Ga0190265_104531482	3300018422	Soil	MAPLAHHAGEQGLAPLLLLLGGGGVTLLVAIARARLAAARTKLTRARRRP
Ga0190265_132614632	3300018422	Soil	AHHAGEEVLVNLLLLGGTWLGLAVAIGRARLASARAKLTRKQGSRRR
Ga0190275_106920162	3300018432	Soil	MRPLAHHLGEESLAPLLLLASGGGLSLLVAIGRARLAAARATLTRKQGARRR
Ga0190269_107979961	3300018465	Soil	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRVRRRR
Ga0190268_102566872	3300018466	Soil	MRPLGHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0190274_100070915	3300018476	Soil	MPPATPTATPTDETMRPLAHHAGEQGLAPLLLLLGGGGVPLLVAIGRARLAAARATLTRKQGARRR
Ga0184642_10016051	3300019279	Groundwater Sediment	MHPIAHHLGEQALAPLLLLGSAGVPLLVAIARARLAAARAKLTRTRRP
Ga0190264_104942022	3300019377	Soil	MAPLAHHAGEQGLAPLLLLLGGGGVTLLVAITRARLAAARAKLTRARRRP
Ga0190264_121832291	3300019377	Soil	MGEDSLVNLLLFGGSWLSVAAVVGRARLAAARAKLTRARRRP
Ga0210378_103496912	3300021073	Groundwater Sediment	VLATHAGEQGPVPLLLLGSGEVPLVMAIGRARLAAA
Ga0210381_101181803	3300021078	Groundwater Sediment	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRP
Ga0210381_102690942	3300021078	Groundwater Sediment	LFHELIMAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0224452_10065763	3300022534	Groundwater Sediment	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARRKP
Ga0222623_100088834	3300022694	Groundwater Sediment	MHPIAHHLGEQALAPLLLGSGGVSLMVAIARARLAAGRAKLTRPRRRP
Ga0222623_100886183	3300022694	Groundwater Sediment	LGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRP
Ga0222623_102014432	3300022694	Groundwater Sediment	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRRWSSVSS
Ga0222623_103083332	3300022694	Groundwater Sediment	MRPLAHHAGEQFLAPLLLLGGGWISLAAAAGRARLAATRDRLTRR
Ga0222622_101916032	3300022756	Groundwater Sediment	LAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLATARAKLTRKQGARRR
Ga0222622_108069811	3300022756	Groundwater Sediment	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRTRR
Ga0207706_101594072	3300025933	Corn Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRR
Ga0207667_119707281	3300025949	Corn Rhizosphere	HPLAHHLGEDSLVNALLLACSGLSVLVAIGRAQLAVARAKLTRARRRR
Ga0207675_1001868521	3300026118	Switchgrass Rhizosphere	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRP
Ga0209879_10318282	3300027056	Groundwater Sand	MTPLAHHAGEQSLAALLLLLLGGGSLSVVVAIGRAHLVAARARLRPPWWRRSPYRG
Ga0209795_101466272	3300027718	Agave	MDPVVAHHAGEQALAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGSRRR
Ga0209795_101895782	3300027718	Agave	MHPLAHHLGEDSLVNLLLLGGTGLSLMVVEGRAKLAAARARLTR
Ga0209574_100256962	3300027809	Agave	MDPIVAHHAGEQGLAPLLLLLSSGGVPLMVAIGRTRLAAARARLTRARRRP
Ga0209814_100062493	3300027873	Populus Rhizosphere	MHPIAHHLGEQALAPLLLLGSGGVPLMVAIGRARLAATRAKLTRPRKQP
Ga0209382_103782503	3300027909	Populus Rhizosphere	MRPLAHHAGEQGLAPLLLLLLGGGGVPLLVAIGRARLAAARAKLTRKQGSRRR
Ga0247822_100190962	3300028592	Soil	MHPLAHHLGEDSLVNALLLACSGLSVLVAIGRAQLAAARAKLTRARRRR
Ga0307291_10968412	3300028707	Soil	LAHHAGEQGLAPPLLLLGSGGVPLLVAIGRARLAAARAKLIRKQGARRR
Ga0307291_11451851	3300028707	Soil	MRPLAHHAGEQGLAPLLLLLVSGGVPVMVAVGRARLAAVRAKLTRARR
Ga0307295_101751042	3300028708	Soil	MHPLAHHLGEDSLVNLLLVGGAGLSLMVVEGRARLASARA
Ga0307295_102589291	3300028708	Soil	MHPLAHHLGEDSLVNLLLLGGGGLTLMVVEGRARLAAARAH
Ga0307293_100146601	3300028711	Soil	HPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRP
Ga0307293_101085062	3300028711	Soil	MRPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLATARAKLTRKQGARRR
Ga0307303_101211162	3300028713	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLSRAR
Ga0307311_100197691	3300028716	Soil	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLA
Ga0307311_101066741	3300028716	Soil	ELIMAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0307298_100047804	3300028717	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLSRARRRP
Ga0307298_101306282	3300028717	Soil	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVATRAKLTRRGERRDRP
Ga0307301_100273483	3300028719	Soil	LLPHPLTMHPIAHHLGEQALAPLLLLGGSWLTLLVAAGRDRLAAARAKLTRPRRRP
Ga0307319_100695202	3300028722	Soil	TRVDMHPIAHHLGEQALAPLLLGSGGVALVVAIGRARLAAARAKVTRPRSRP
Ga0307318_100079563	3300028744	Soil	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRTRRP
Ga0307318_102135783	3300028744	Soil	LLPQELTRMHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAARAKLTRARRRP
Ga0307318_102589792	3300028744	Soil	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTR
Ga0307297_100622542	3300028754	Soil	MHPLAHHLGEDSLVNALLLASSGLSVLVAIGRARLVAASAKLTRRGERRDRP
Ga0307297_100957421	3300028754	Soil	QGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0307320_102432082	3300028771	Soil	LLLLHELIMAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0307288_100657722	3300028778	Soil	MAPLAHHAGEQGLAPLLLLLLGSGGVPLLVAIARARLAAARAKLTRMRRP
Ga0307306_101624192	3300028782	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARR
Ga0307299_100256531	3300028793	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLSRARRR
Ga0307299_100579071	3300028793	Soil	PLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARRRP
Ga0307287_101546922	3300028796	Soil	MHPIAHHLGEQALAPLLLLGGSWLTLLVAAGRDRLAAARAKLTRPRRRP
Ga0307287_102175342	3300028796	Soil	MHPIAHHLGEQALAPLLLGSAGIPLLVAIGRARLAAARAKLTRPRKRP
Ga0307302_100253396	3300028814	Soil	QRLLLLHELIMAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRTRRP
Ga0307289_101252441	3300028875	Soil	GLAPLLLLGSGGVPLLVAIGRARLAAARAKLIRKQGARRR
Ga0307286_100367753	3300028876	Soil	EQALAPLLLGSGGVALLVAIGRARLAAARAKVTRPRSRP
Ga0307278_100130894	3300028878	Soil	MRPLAHHAGEDSLANLLLLGSGGGLSLLLAIGRARVAAARARLTRKQGSRRRG
Ga0307278_100161514	3300028878	Soil	MRPLAHHLGEESLAPLLLLLGGGGLPLVVAIGRARVAATRARLAGKRGFRRRA
Ga0307278_100180693	3300028878	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLLAMGRARLAAARAKLTRPRRRP
Ga0307278_100837352	3300028878	Soil	MRPLAHHAGEQGLAPLLLLLGSGGVPLMVAIGRARLAAARAKLTRARRRP
Ga0307300_100128184	3300028880	Soil	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRARRR
Ga0307300_100414391	3300028880	Soil	EQALAPLLLGSGGVALVVAIGRARLAAARAKVTRPRSRP
Ga0268259_100730181	3300030499	Agave	HHAGEQGLAPLLLLSSGGVPLVMAIGRARLAAARAKLTRARRKP
Ga0268253_103013942	3300030514	Agave	HQLTTMRPLAHHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0308204_100316912	3300031092	Soil	MAPLAHHAGEQGLAPLLLLLGSGGVPLLVAIARARLAAARAKLTRTRRP
Ga0308187_101633561	3300031114	Soil	HHAGEQGLAPLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0308187_103886811	3300031114	Soil	MHPIAHHLGEQALAPLLLGSGGVALLVAIGRARLAAARAKLTRTRRP
Ga0308194_100759602	3300031421	Soil	MAPLAHHAGEQGLAPLLLLLLGGGGGPLMVAIGRARLAAARAK
Ga0307408_1007473761	3300031548	Rhizosphere	MTPLAHHAGEQGLAPLLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQGARRR
Ga0307408_1008318982	3300031548	Rhizosphere	VHPLAHHTGEDTLAPLLLLTSSGLSLLAAIGRARLAAARAQLTRGKRRR
Ga0307405_101398332	3300031731	Rhizosphere	MHPLAHHLGEDSLVNALLLGSGGLSVMVAIGRAQLAAARAKLTRARRRP
Ga0307405_103407772	3300031731	Rhizosphere	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRPRRRP
Ga0307405_107795652	3300031731	Rhizosphere	MHPLAHHLGEDSLVNLLLLGGGGLSLVAAAGRARLAAIRAR
Ga0307413_114750491	3300031824	Rhizosphere	MRPLAHHLGEESLAPLLLLASGGGLSLLVAIGRARLAAARAKLTRPRRRP
Ga0307410_101672572	3300031852	Rhizosphere	MRPLAHHLGEESLAPLLLLASGGGLSLLVAIGRARLAAARAKLTRKQGARRR
Ga0307406_115738161	3300031901	Rhizosphere	QELTTMHPLAHHLGEDSLVNALLLGSGGLSVMVAIGRAQLAAARAKLTRARRRP
Ga0307407_102225821	3300031903	Rhizosphere	PLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAARAKLTRKQGARRR
Ga0307407_104943892	3300031903	Rhizosphere	MRPLAHHLGEESLAPLLLLGSGGGLSLLVAIGRARLAAAR
Ga0307412_112399902	3300031911	Rhizosphere	MTPLAHHAGEQGLAPLLLLLLGSGGVPLLVAIGRARLAAARAKLTRKQG
Ga0307415_1014544562	3300032126	Rhizosphere	MHPIAHHLGEQALAPLLLLGGGGVPLMVAIGRARLAAARARLTRKLGSRRRG
Ga0268251_103213612	3300032159	Agave	MHPIVAHHAGEQGLAPLLLLSSGGVPLVMAIGRARLAAARAKLTRARRKP
Ga0268251_104094662	3300032159	Agave	MRPIAHHLGEQALAPLLLGSGGVGLLLAIGRAQLAAARARLSRARRRP
Ga0307471_1005960211	3300032180	Hardwood Forest Soil	MHPLAHHLSEDSLLNLLLISGTGLSLVVVEGRARLAAARARLTRR
Ga0247829_101557361	3300033550	Soil	LAHHLGEDSLVNALLLASSGLSVLVAIGRAQLAAARAKLTRARRRR
Ga0334913_075610_428_583	3300034172	Sub-Biocrust Soil	MTPLAHHAGEQGLAPLLLLLLSGGGVPLLVAIGRARLAAARAKLTRPRRRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F035659

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences