NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F038393

Metagenome / Metatranscriptome Family F038393

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F038393
Family Type Metagenome / Metatranscriptome
Number of Sequences 166
Average Sequence Length 50 residues
Representative Sequence MGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA
Number of Associated Samples 118
Number of Associated Scaffolds 166

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 89.63 %
% of genes near scaffold ends (potentially truncated) 22.29 %
% of genes from short scaffolds (< 2000 bps) 89.16 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (84.940 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(27.108 % of family members)
Environment Ontology (ENVO) Unclassified
(30.723 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(30.120 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.57%    β-sheet: 0.00%    Coil/Unstructured: 54.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 166 Family Scaffolds
PF00892EamA 26.51
PF00155Aminotran_1_2 16.87
PF07690MFS_1 3.01
PF13561adh_short_C2 1.20
PF01493GXGXG 0.60
PF03116NQR2_RnfD_RnfE 0.60
PF00496SBP_bac_5 0.60
PF13749HATPase_c_4 0.60
PF07676PD40 0.60
PF12706Lactamase_B_2 0.60
PF13683rve_3 0.60
PF00690Cation_ATPase_N 0.60

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 166 Family Scaffolds
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 0.60
COG1805Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrBEnergy production and conversion [C] 0.60
COG4658Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfD subunitEnergy production and conversion [C] 0.60

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms84.94 %
UnclassifiedrootN/A15.06 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908032|Perma_A_C_ConsensusfromContig11307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria636Open in IMG/M
3300000956|JGI10216J12902_105466426All Organisms → cellular organisms → Bacteria1142Open in IMG/M
3300001213|JGIcombinedJ13530_109904414Not Available598Open in IMG/M
3300002568|C688J35102_118285385All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300003858|Ga0031656_10344709Not Available502Open in IMG/M
3300004079|Ga0055514_10155643All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300004081|Ga0063454_100584733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales811Open in IMG/M
3300004114|Ga0062593_101643622All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300004156|Ga0062589_100865968All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300004643|Ga0062591_102176226All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria576Open in IMG/M
3300004778|Ga0062383_10056303All Organisms → cellular organisms → Bacteria1566Open in IMG/M
3300004779|Ga0062380_10128445All Organisms → cellular organisms → Bacteria970Open in IMG/M
3300005093|Ga0062594_100357669All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300005328|Ga0070676_10348665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1017Open in IMG/M
3300005332|Ga0066388_105534939All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300005334|Ga0068869_101810609All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300005339|Ga0070660_100842469All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300005544|Ga0070686_101803863All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005548|Ga0070665_101358810All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300005842|Ga0068858_101221122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria739Open in IMG/M
3300006047|Ga0075024_100585412All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300006050|Ga0075028_100459543All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300006057|Ga0075026_100411254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria763Open in IMG/M
3300006059|Ga0075017_100070772All Organisms → cellular organisms → Bacteria2380Open in IMG/M
3300006172|Ga0075018_10249315All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria859Open in IMG/M
3300006606|Ga0074062_10258204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria779Open in IMG/M
3300006755|Ga0079222_10553332All Organisms → cellular organisms → Bacteria862Open in IMG/M
3300006881|Ga0068865_101622021Not Available582Open in IMG/M
3300007521|Ga0105044_10430176Not Available1174Open in IMG/M
3300009120|Ga0117941_1058301All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300009120|Ga0117941_1064036All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300009148|Ga0105243_11304370All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300009167|Ga0113563_10277720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1723Open in IMG/M
3300009167|Ga0113563_11114311Not Available915Open in IMG/M
3300009167|Ga0113563_13343815Not Available543Open in IMG/M
3300009553|Ga0105249_10609757All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300009873|Ga0131077_10371059All Organisms → cellular organisms → Bacteria → Terrabacteria group1379Open in IMG/M
3300009873|Ga0131077_11122424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria662Open in IMG/M
3300012212|Ga0150985_108442800Not Available505Open in IMG/M
3300012488|Ga0157343_1029596All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300012668|Ga0157216_10044478All Organisms → cellular organisms → Bacteria2229Open in IMG/M
3300012896|Ga0157303_10121699All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300012905|Ga0157296_10177802All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300012908|Ga0157286_10355555All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300012957|Ga0164303_11529527All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012958|Ga0164299_10869108All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300012958|Ga0164299_11446205All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300012985|Ga0164308_11240491Not Available675Open in IMG/M
3300012989|Ga0164305_10361046All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300013297|Ga0157378_12382059All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300013306|Ga0163162_10724903All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300013306|Ga0163162_11172168Not Available871Open in IMG/M
3300014261|Ga0075360_1032938All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300014317|Ga0075343_1013910All Organisms → cellular organisms → Bacteria1313Open in IMG/M
3300014322|Ga0075355_1193141All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300014325|Ga0163163_10468682All Organisms → cellular organisms → Bacteria1320Open in IMG/M
3300014326|Ga0157380_10903405All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300014502|Ga0182021_12101529All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300015159|Ga0167630_1002356All Organisms → cellular organisms → Bacteria3770Open in IMG/M
3300015163|Ga0167665_1021172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1290Open in IMG/M
3300015189|Ga0167667_1003803All Organisms → cellular organisms → Bacteria4930Open in IMG/M
3300015189|Ga0167667_1075904All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300015189|Ga0167667_1082377All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300015208|Ga0167664_1038350All Organisms → cellular organisms → Bacteria1623Open in IMG/M
3300015371|Ga0132258_10273520All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4141Open in IMG/M
3300015371|Ga0132258_11530331All Organisms → cellular organisms → Bacteria1684Open in IMG/M
3300015371|Ga0132258_12074656All Organisms → cellular organisms → Bacteria1429Open in IMG/M
3300015372|Ga0132256_101280819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium846Open in IMG/M
3300015374|Ga0132255_103196122All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300017792|Ga0163161_10629530All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300017792|Ga0163161_11412306All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300017965|Ga0190266_10057498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1411Open in IMG/M
3300017965|Ga0190266_10454781All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300017965|Ga0190266_10932804All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300018073|Ga0184624_10238985All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300018476|Ga0190274_13452379Not Available533Open in IMG/M
3300018481|Ga0190271_10222148All Organisms → cellular organisms → Bacteria1900Open in IMG/M
3300018481|Ga0190271_11034135All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300019362|Ga0173479_10579288Not Available583Open in IMG/M
3300021470|Ga0194051_1025373All Organisms → cellular organisms → Bacteria2320Open in IMG/M
(restricted) 3300021517|Ga0224723_1013912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3483Open in IMG/M
3300022213|Ga0224500_10033007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2137Open in IMG/M
3300022226|Ga0224512_10372023Not Available707Open in IMG/M
3300025918|Ga0207662_10139413All Organisms → cellular organisms → Bacteria1535Open in IMG/M
3300025942|Ga0207689_11010683All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300025944|Ga0207661_10647684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria971Open in IMG/M
3300025980|Ga0210137_1078242Not Available525Open in IMG/M
3300026089|Ga0207648_10386858All Organisms → cellular organisms → Bacteria1265Open in IMG/M
3300026118|Ga0207675_100611306All Organisms → cellular organisms → Bacteria1094Open in IMG/M
3300026142|Ga0207698_12310765All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300027831|Ga0209797_10129613Not Available1091Open in IMG/M
3300027831|Ga0209797_10436465All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300027840|Ga0209683_10295693All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300027843|Ga0209798_10094160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1530Open in IMG/M
3300027894|Ga0209068_10025220All Organisms → cellular organisms → Bacteria2917Open in IMG/M
3300027894|Ga0209068_10082721All Organisms → cellular organisms → Bacteria1673Open in IMG/M
3300027894|Ga0209068_10271568All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium947Open in IMG/M
3300027900|Ga0209253_10302518All Organisms → cellular organisms → Bacteria1241Open in IMG/M
3300027902|Ga0209048_10004610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria13171Open in IMG/M
3300027915|Ga0209069_10874979Not Available542Open in IMG/M
3300028379|Ga0268266_11401534All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300028652|Ga0302166_10137815All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria562Open in IMG/M
3300028732|Ga0302264_1134477All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300028744|Ga0307318_10375982All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300028770|Ga0302258_1062021All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300028855|Ga0302257_1033113All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300028861|Ga0302259_1163444Not Available555Open in IMG/M
3300028865|Ga0302291_10184932All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300028876|Ga0307286_10130507All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300029984|Ga0311332_10237613All Organisms → cellular organisms → Bacteria1382Open in IMG/M
3300029989|Ga0311365_11316026All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300030003|Ga0302172_10242731All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300030019|Ga0311348_10891486Not Available662Open in IMG/M
3300030294|Ga0311349_10481126All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300030336|Ga0247826_11072454All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300031170|Ga0307498_10205616Not Available689Open in IMG/M
3300031366|Ga0307506_10248778All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300031834|Ga0315290_10038411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3837Open in IMG/M
3300031834|Ga0315290_10078159All Organisms → cellular organisms → Bacteria2750Open in IMG/M
3300031834|Ga0315290_10157770All Organisms → cellular organisms → Bacteria1955Open in IMG/M
3300031834|Ga0315290_10464382All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300031834|Ga0315290_10557173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria998Open in IMG/M
3300031834|Ga0315290_11341603Not Available588Open in IMG/M
3300031873|Ga0315297_10210167All Organisms → cellular organisms → Bacteria1604Open in IMG/M
3300031873|Ga0315297_11067745Not Available666Open in IMG/M
3300031873|Ga0315297_11327220All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300031873|Ga0315297_11426253All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300031918|Ga0311367_10198512All Organisms → cellular organisms → Bacteria2101Open in IMG/M
3300031997|Ga0315278_10236794All Organisms → cellular organisms → Bacteria1883Open in IMG/M
3300031997|Ga0315278_10452230All Organisms → cellular organisms → Bacteria1324Open in IMG/M
3300031997|Ga0315278_10647404All Organisms → cellular organisms → Bacteria1078Open in IMG/M
3300031997|Ga0315278_10703456All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300031997|Ga0315278_10739085All Organisms → cellular organisms → Bacteria998Open in IMG/M
3300031997|Ga0315278_10926478All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300031997|Ga0315278_11305011All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300031997|Ga0315278_12177864All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300032143|Ga0315292_10335337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1264Open in IMG/M
3300032143|Ga0315292_10677721All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300032156|Ga0315295_12208152All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300032163|Ga0315281_11037747Not Available829Open in IMG/M
3300032164|Ga0315283_10035902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4913Open in IMG/M
3300032164|Ga0315283_10043897All Organisms → cellular organisms → Bacteria4475Open in IMG/M
3300032164|Ga0315283_10763370All Organisms → cellular organisms → Bacteria1038Open in IMG/M
3300032164|Ga0315283_10814521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1000Open in IMG/M
3300032164|Ga0315283_11197350All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300032164|Ga0315283_12088375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria561Open in IMG/M
3300032173|Ga0315268_11151447All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300032177|Ga0315276_10772241All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300032177|Ga0315276_11588141All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300032177|Ga0315276_12609665All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300032256|Ga0315271_10109038All Organisms → cellular organisms → Bacteria2117Open in IMG/M
3300032256|Ga0315271_10632591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria916Open in IMG/M
3300032256|Ga0315271_11308605Not Available626Open in IMG/M
3300032256|Ga0315271_11857331All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300032342|Ga0315286_10537256All Organisms → cellular organisms → Bacteria1213Open in IMG/M
3300032342|Ga0315286_11102904All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300032397|Ga0315287_10805717All Organisms → cellular organisms → Bacteria1104Open in IMG/M
3300032397|Ga0315287_11451995All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria778Open in IMG/M
3300032397|Ga0315287_11516948All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300032401|Ga0315275_10763257All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300032401|Ga0315275_12646983All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria516Open in IMG/M
3300032516|Ga0315273_11343032All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300032516|Ga0315273_12641463All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300034652|Ga0316598_243958Not Available511Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment27.11%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.45%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen7.23%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.42%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment4.22%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil4.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.41%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.41%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.41%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.41%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.81%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.81%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.81%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.20%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.20%
Lake SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment1.20%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.20%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.20%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater1.20%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.60%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.60%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.60%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.60%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.60%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.60%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.60%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.60%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.60%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.60%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.60%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.60%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.60%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.60%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.60%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.60%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908032Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_allEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003858Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DIEnvironmentalOpen in IMG/M
3300004079Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004778Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3FreshEnvironmentalOpen in IMG/M
3300004779Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3FreshEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007521Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01EnvironmentalOpen in IMG/M
3300009120Lake sediment microbial communities from Tanners Lake, St. Paul, MNEnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009873Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plantEngineeredOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012488Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610Host-AssociatedOpen in IMG/M
3300012668Arctic soils microbial communities. Combined Assembly of 23 SPsEnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014261Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D1EnvironmentalOpen in IMG/M
3300014317Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300014322Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015159Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3C, Proglacial river margin, by glacier terminus)EnvironmentalOpen in IMG/M
3300015163Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)EnvironmentalOpen in IMG/M
3300015189Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)EnvironmentalOpen in IMG/M
3300015208Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300021470Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-20mEnvironmentalOpen in IMG/M
3300021517 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaGEnvironmentalOpen in IMG/M
3300022213Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300022226Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_13EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025980Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027716Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027831Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027840Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028652Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3EnvironmentalOpen in IMG/M
3300028732Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028770Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4EnvironmentalOpen in IMG/M
3300028855Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_4EnvironmentalOpen in IMG/M
3300028861Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4EnvironmentalOpen in IMG/M
3300028865Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029989III_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300030003Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3EnvironmentalOpen in IMG/M
3300030019II_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030294II_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032143Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300034652Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Perma_A_C_010251202124908032SoilLTTWIEWYRFARHALELGHVEASSYASARYVEEQNRAVSREWRPA
JGI10216J12902_10546642623300000956SoilMSDGQRLTTWIEWYRFARRALELSHAEASTYATARYVEEQNRAVAREWRAA*
JGIcombinedJ13530_10990441423300001213WetlandMTDAQRLTTWIEWYRFATHTLELPHAEAAAYATARYIEEQNRKVLRERRAA*
C688J35102_11828538513300002568SoilMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEEQNRTQTREWRAA*
Ga0031656_1034470913300003858Freshwater Lake SedimentMGDAQRLTTWIEWYRFARHALDLGHAEASEYATARYVEEQNRVHTRERRAA*
Ga0055514_1015564323300004079Natural And Restored WetlandsMGDGQRLTTWIDWYRFARVALELDHAEASSYATARYVEEQNRVLVRERRAA*
Ga0063454_10058473313300004081SoilMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYLEEQNRVKAQEWRAA*
Ga0062593_10164362213300004114SoilMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA*
Ga0062589_10086596823300004156SoilMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA*
Ga0062591_10217622613300004643SoilMSDGQRLTTWIEWYRFAREALDLGHAEASAYATARYVEEQNRTQTREWRAA*
Ga0062383_1005630333300004778Wetland SedimentMSDAQRLTTWIEWYRFARHALGLGHAEASEYATARYVEEQNRVHAPERRAA*
Ga0062380_1012844533300004779Wetland SedimentMGNEQRLTTWIEWYRFARRSLGLGQAEASSYATARFVEEQNRAVLRARRAV*
Ga0062594_10035766923300005093SoilMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA*
Ga0070676_1034866523300005328Miscanthus RhizosphereMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQSREWRAA*
Ga0066388_10553493923300005332Tropical Forest SoilMGDAQRLTTWIDWYRFARRALELDHAEASAYATARFVEEQNRESSKKREAA*
Ga0068869_10181060923300005334Miscanthus RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNRETARKKEAA*
Ga0070660_10084246923300005339Corn RhizosphereMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRHQTRQWRAA*
Ga0070686_10180386313300005544Switchgrass RhizosphereMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQSREWRAA*
Ga0070665_10135881013300005548Switchgrass RhizosphereVSEHPADTPSEMSDGQRLTTWIEWYRFAREALDLGHAEASAYATARYVEEQNRTQTREWRAA*
Ga0068858_10122112213300005842Switchgrass RhizosphereMSDGQRLTTWIDWYRFARRALELGHAEASAYATARYVEEQNRADADERRVA*
Ga0075024_10058541223300006047WatershedsMGDATRLTTWIDWYRFARRALELGHAEASSYATARFVEEQNRTVASEWRAA*
Ga0075028_10045954323300006050WatershedsMGDGQRLTTWMDWYRFARRALELGHEEASAYATARFVEEQNRALTQRRRAA*
Ga0075026_10041125423300006057WatershedsMGEGQRLTTWIEWYRFARRALELDHAEASSYATARYVEEQNRIVTRERRAA*
Ga0075017_10007077223300006059WatershedsMGDGQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNRALVRERSAA*
Ga0075018_1024931523300006172WatershedsMSEGQRLTTWIEWYRFARRALEFGHAEASTYATARYVEEQNRVVTRERRAA*
Ga0074062_1025820423300006606SoilMAESQRLTTWIEWYRFARRALDLGHAEACSYATARYVEEQNRVAARGWRAA*
Ga0079222_1055333213300006755Agricultural SoilMGDGQRLTTLIEWYRFARQALELGHAEASAYATARYVEEQNRTQTREWRAA*
Ga0068865_10162202133300006881Miscanthus RhizosphereCRQHDSSEKGAAMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQSREWRAA*
Ga0105044_1043017633300007521FreshwaterMGDATRLTTWIDWYRFARCALEFGHAEASSYATARYVEEQNRTVASEWRAA*
Ga0117941_105830133300009120Lake SedimentMTEVQRLTTWIDWYRFATRTLQLPHAESAGYATARYVEEQNRKVLQERRAA*
Ga0117941_106403643300009120Lake SedimentMTEAQRLKTWIEWYRFATRTLRLSHDESAAYATARYVEEQNRQVLREGRAA*
Ga0105243_1130437013300009148Miscanthus RhizosphereMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQN
Ga0113563_1027772043300009167Freshwater WetlandsMGDGQRLTTWIEWYRFARHALDLGHAEASEYATARYVEEQNRVHTRERRAA*
Ga0113563_1111431133300009167Freshwater WetlandsMGDGQRLTTWIDWYRFARRALELGHGEASAYATARYVEEQNRAHTRERSAA*
Ga0113563_1334381513300009167Freshwater WetlandsMTEAQRLTTWIEWYRFATHTLELPHAEAAAYATARYVEEQNRQLLRERRAA*
Ga0105249_1060975723300009553Switchgrass RhizosphereMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEGQNRTQSREWRAA*
Ga0131077_1037105943300009873WastewaterMHSARLTTWIDWYRFARRALALEHAEAADYATARYVEEQNRTLLRQRKAA*
Ga0131077_1112242423300009873WastewaterMHAERLTTWIDWYRFARRTLELEHAEATQYATARYVEEQNREHLRGRKAA*
Ga0150985_10844280033300012212Avena Fatua RhizosphereEKGAAMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQSREWRAA*
Ga0157343_102959613300012488Arabidopsis RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARFVEEQNREASRKRRAA*
Ga0157216_1004447833300012668Glacier Forefield SoilMGAATRLTTWIDWYRFARRALELGHAEASSYATARYVEDQNRTVASEWRAA*
Ga0157303_1012169913300012896SoilMVDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEEQNRTQTREWRAA*
Ga0157296_1017780223300012905SoilMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTRLWRAA*
Ga0157286_1035555513300012908SoilMGDEQRLTTWIEWYRFARRALELDHAEASAYATARYVEEQNRLIAGKPSAA*
Ga0164303_1152952723300012957SoilMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNREASKKRAAA*
Ga0164299_1086910813300012958SoilMSDGQRLTTWIDWYRFARRALELGHAEASAYATSRYVEEQNRESMSER
Ga0164299_1144620523300012958SoilMGEGQRLTTWIEWYRFARQALELGHAEASAYATARYVEEQN
Ga0164308_1124049123300012985SoilMGNAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNRDAVKKREAA*
Ga0164305_1036104623300012989SoilMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQTREWRAA*
Ga0157378_1238205913300013297Miscanthus RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNRETARKK
Ga0163162_1072490323300013306Switchgrass RhizosphereMVDGQRLTTWIEWYRFAREALELGHAEASAYATARY
Ga0163162_1117216823300013306Switchgrass RhizosphereMGDGQRLTTWIEWYRFAREALDLGHAEASSYATARYVEEQNRTQTREWRAA*
Ga0075360_103293833300014261Natural And Restored WetlandsMGDAQRLTTWIDWYRFARVALELDHAEASSYATARYAEEQNRALVRERRAA*
Ga0075343_101391023300014317Natural And Restored WetlandsMGDATRLTTWIDWYRFARRALDLSHAEASSYATARYVEEQNRAVAREWRAA*
Ga0075355_119314123300014322Natural And Restored WetlandsMGDGQRLTTWIDWYRFARVTLELDHAEASSYATARYVEEQNRVLVRERRAA*
Ga0163163_1046868223300014325Switchgrass RhizosphereMGDGQRLTTWIEWYRFARQALELGHAEATAYATARFVEEQNRTQAREWRAA*
Ga0157380_1090340533300014326Switchgrass RhizosphereMSDGQRLTTWIDWYRFARRALELGHAEASAYATSRYVEEQNRESMSERRVA*
Ga0182021_1210152923300014502FenMGDGQRLTTWIEWYRFARVALELEHAEASAYATARYVEEQNRALVRERRAA*
Ga0167630_100235613300015159Glacier Forefield SoilNPPEKGAADMGNAQRPTTWIEWYRFARQALELGHEEASSYATARYVEDQNRAVSQEWRAA
Ga0167665_102117223300015163Glacier Forefield SoilMGNGQRLTTWIEWYRFARRALELGQTEATSYATARYVEEQNRVLTRERRAA*
Ga0167667_100380333300015189Glacier Forefield SoilMGDATRLTTWIDWYRFARRALELGHAEASSYATARYVEEQNRTVASEWRAA*
Ga0167667_107590433300015189Glacier Forefield SoilPSRRGAAMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEEQNRTQAREWRAA*
Ga0167667_108237713300015189Glacier Forefield SoilMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEE
Ga0167664_103835033300015208Glacier Forefield SoilMGNAQRPTTWIEWYRFARQALELGHEEASSYATARYVEDQNRAVSQEWRAA*
Ga0132258_1027352053300015371Arabidopsis RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNREAAAKKREAA*
Ga0132258_1153033123300015371Arabidopsis RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNREVTSKKDAA*
Ga0132258_1207465633300015371Arabidopsis RhizosphereMGDGQRLTTWIEWYRFARQALELGHAEASAYATARYVEEQNRTQTREWRAA*
Ga0132256_10128081923300015372Arabidopsis RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNREATAKKREAA*
Ga0132255_10319612223300015374Arabidopsis RhizosphereMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTRQWRAA*
Ga0163161_1062953023300017792Switchgrass RhizosphereMSDGQRLTTWIDWYRFARRALELGHAEASAYATSRYVEEQNRESMSERRVA
Ga0163161_1141230623300017792Switchgrass RhizosphereMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEEQNRAQTREWRAA
Ga0190266_1005749833300017965SoilMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTRSREWRAA
Ga0190266_1045478123300017965SoilMSDGQRLTTWIEWYRFARRALELSHAEASTYATARYVEEQNRAVAREWRAA
Ga0190266_1093280423300017965SoilMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYVEEQNRTQTREWRAA
Ga0184624_1023898533300018073Groundwater SedimentMSDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA
Ga0190274_1345237923300018476SoilMGDGQRLTTWIEWYRFAREALELGHTEASAYATARYVEEQNRSQTREWRAA
Ga0190271_1022214833300018481SoilMGDATRLTTWIDWYRFARRALELGHAEASSYATARYVEEQNRSATSEWRAA
Ga0190271_1103413533300018481SoilMGDGQRLTTWIEWYRFARQALELGHAEASSYATARYVEEQNRGLAREWRAA
Ga0173479_1057928833300019362SoilMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA
Ga0187893_1020714813300019487Microbial Mat On RocksMSGERLTTWIEWYRFARRVLGLEHEEAAQYATARYLEELNRER
Ga0194051_102537323300021470Anoxic Zone FreshwaterMGDTTRLTTWIDWYRFARRALDFGHAEASSYATARYVEEQNRTVVSEWRVA
(restricted) Ga0224723_101391223300021517Freshwater SedimentMHAERLTTWIDWYRFARDTLALGHEEAAQYATVRYVEEQNRAHLRRAA
Ga0224500_1003300733300022213SedimentMTSTTPHSWIEWYRFARETLGLGHAEAAQYATARHVEDENRARRDADERRAA
Ga0224512_1037202323300022226SedimentMTSTTPHSWIEWYRFARETLGLGHAEAAQYATARHVEDENRARRDAGERRAA
Ga0207662_1013941333300025918Switchgrass RhizosphereMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQTREWRAA
Ga0207689_1101068323300025942Miscanthus RhizosphereMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQ
Ga0207661_1064768433300025944Corn RhizosphereSEMSDGQRLTTWIEWYRFAREALDLGHAEASAYATARYVEEQNRTQTREWRAA
Ga0210137_107824213300025980Natural And Restored WetlandsMGDGQRLTTWIDWYRFARVALELDHAEASSYATARYVEEQNRVLVRERRAA
Ga0207648_1038685813300026089Miscanthus RhizosphereMGDGQRLTTWIEWYRFAREALELGHTEASSYATAR
Ga0207675_10061130623300026118Switchgrass RhizosphereMGDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRTQTREWRAA
Ga0207698_1231076523300026142Corn RhizosphereMVDGQRLTTWIEWYRFAREALELGHAEASAYATARYVEEQNRAQ
Ga0209682_1013107513300027716Wetland SedimentVGDAQRLTSWIDWYRFARHTLELGHAEAAAYATSRFVEEQNRAGLRDRKGSSLAAG
Ga0209797_1012961313300027831Wetland SedimentMGNEQRLTTWIEWYRFARRSLGLGQAEASSYATARFVEEQNRAVLRARRAV
Ga0209797_1043646523300027831Wetland SedimentMSDAQRLTTWIEWYRFARHALGLGHAEASEYATARYVEEQNRVHA
Ga0209683_1029569323300027840Wetland SedimentMGDAQRLTTWIEWYRFARHALDLGHAEASEYATARYVEEQNRVHTRERRAA
Ga0209798_1009416023300027843Wetland SedimentMSDAQRLTTWIEWYRFARHALGLGHAEASEYATARYVEEQNRVHAPERRAA
Ga0209068_1002522043300027894WatershedsMSEGQRLTTWIEWYRFARRALEFGHAEASTYATARYVEEQNRVVTRERRAA
Ga0209068_1008272123300027894WatershedsMGDGQRLTTWMDWYRFARRALELGHEEASAYATARFVEEQNRALTQRRRAA
Ga0209068_1027156823300027894WatershedsMGEGQRLTTWIEWYRFARRALELGHAEASSYATARYVEEQNRVVTRERRAA
Ga0209253_1030251813300027900Freshwater Lake SedimentMGDSQRLTTWIEWYRFARHALDLGHAEASEYATARYVEEQNRVHTRERRAA
Ga0209048_1000461053300027902Freshwater Lake SedimentMSDGQRLTTWIDWYRFARRALELDQAEASAYATARYVEEQNRALVRERSAA
Ga0209069_1087497923300027915WatershedsMGDATRLTTWIDWYRFARRALELGHAEASAYATARYVEEQNRSVASEWRAA
Ga0268266_1140153423300028379Switchgrass RhizosphereMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNRETARKKEAA
Ga0302166_1013781523300028652FenMGDGQRLTTWIEWYRFARVALELEHAEASAYATARYVEEQNRALVRERRAA
Ga0302264_113447713300028732FenMGDGQRLTTWIEWYRFARAALELDHAEASTYATTRYVEE
Ga0307318_1037598223300028744SoilMVDGQRLTTWIEWYRFARNALELGHAEASSYATARYVEEQNRAVTQEWRAA
Ga0302258_106202113300028770FenMGDGQRLTTWIEWYRFARQALELGHEEASAYATARFVEEQNRTQTR
Ga0302257_103311333300028855FenMGDGQRLTTWIEWYRFARQALELGHAEASSYATARFVEEQNRTLTREWRAA
Ga0302259_116344423300028861FenMGDGQRLTTWIEWYRFARAALELDHAEASTYATTRYVEEQNRVLVRERRAA
Ga0302291_1018493213300028865FenGDGQRLTTWIEWYRFARVALELEHAEASAYATARYVEEQNRALVRERRAA
Ga0307286_1013050713300028876SoilMGDGQRLTTWIEWYRFAREALELGHAEASSYATARYV
Ga0311332_1023761323300029984FenMGDGQRLTTWIEWYRFARRALELGQTEAAAYATARYVEEQNRSLARDWRTA
Ga0311365_1131602623300029989FenMGDGQRLTTWIEWYRFARAALELDHAEASTFATTRYVEEQNRVLVRERRAA
Ga0302172_1024273123300030003FenMGDGQRLTTWIEWYRFARQALELGHAEASSYATARFVEEQNRTLTREWR
Ga0311348_1089148623300030019FenMGDGQRLTTWIEWYRFARHALELGQTEAAAYATARYVEEQNRSLVRDWRTA
Ga0311349_1048112623300030294FenMGDGQRLTTWIEWYRFARQALELGHEEASAYATARFVEEQNRTQTREWRAA
Ga0247826_1107245423300030336SoilMGDAQRLTTWIDWYRFARRALELDHAEASAYATARYVEEQNREMTRKQEAA
Ga0307498_1020561623300031170SoilMGDAQRLTTWIDWYRFARRALELEHAEASAYATARYVEEQNRPQAREWRAA
Ga0307506_1024877823300031366SoilMGDGQRLTTWIEWYRFARQALELGHVEASSYATARFVEEQNRTIARDRKAA
Ga0315290_1003841153300031834SedimentMGDTQRLKTWIEWYRFARRTLELAHVEAVAYANVRYVEEQNREHTHDWRTA
Ga0315290_1007815923300031834SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARHVEEQNRVHTRERRAA
Ga0315290_1015777023300031834SedimentMSDGQRLTTWIEWYRFARRALELGHVEASAYATARYVEEQNRDLAREWRAA
Ga0315290_1046438233300031834SedimentMSDGQRLTTWIEWYRFARRALELGQTEASSYATARYVEEQNRVLVRERRAA
Ga0315290_1055717313300031834SedimentMSDGQRLTTWIEWYRFARHALELGHAEASAYATARYVEEQNRDLAREWRAA
Ga0315290_1134160333300031834SedimentMGDGQRLTTWIEWYRFARHALELGHSEASEYATARYVEEQNRVHTREWRAA
Ga0315297_1021016723300031873SedimentMGDATRLTTWIDWYRFARRALDLGHAEASSYATARYVEEQNRTVASEWRAA
Ga0315297_1106774513300031873SedimentMSDGQRLTTWIEWYRFARYALELGHAEASAYATARYVEEQNRDVAREWRAA
Ga0315297_1132722023300031873SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRVQTRERRAA
Ga0315297_1142625323300031873SedimentMADGQRLTMWIEWYRFARHALELGRVEASEYATARYVEEQNRVHTRERRAA
Ga0311367_1019851213300031918FenMGDGQRLTTWIEWYRFARQALELGHEEASAYATARF
Ga0315278_1023679423300031997SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTRERRAA
Ga0315278_1045223023300031997SedimentMGDGQRLTTWIEWYRFARNALELGHAEASAYATARYVEEQNRDVAREWRAA
Ga0315278_1064740433300031997SedimentMGDGQRLTTWIEWYRFARRALELGHAEASSYATARYVEEQNRDLAREWRAA
Ga0315278_1070345633300031997SedimentMGDGQRLTTWIEWYRFARHALELGHAEASAYATARYVEEQNRDLAREWRAA
Ga0315278_1073908523300031997SedimentMGDTQRLKTWIEWYRFARRTLELAHLEAVAYANVRYVEEQNREHTHDWRTA
Ga0315278_1092647813300031997SedimentMGDGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRAQTRERRAA
Ga0315278_1130501113300031997SedimentQRLTTWTEWYRFARHALELGRIEASEYATARYVEEQNRVQTRERRAA
Ga0315278_1217786423300031997SedimentMSDGQRLTTWIEWYRFARHALELGHAEASAYATARYVEEQNRVRAREWRAA
Ga0315292_1033533733300032143SedimentMGDSQRLTTWIEWYRFARHALDLGHAEASEYATARYVEEQNRVHAHERRAA
Ga0315292_1067772123300032143SedimentMADGQRLTTWIEWYRFARHALEFGRIEASEYATARYVEEQNRVQTRERRAA
Ga0315295_1220815233300032156SedimentREATDMGDATRLTTWIDWYRFARRALDLGHAEASSYATARYVEEQNRTVASEWRAA
Ga0315281_1103774723300032163SedimentMGDGQRLTTWIEWYRFARQALELGHAEAASYATARHVEEQNRAVTRERRAA
Ga0315283_1003590243300032164SedimentMSDGQRLTTWIEWYRFARYALELGHAEASAYATARYVEEQNRDLAREWRAA
Ga0315283_1004389753300032164SedimentMADGQRLTTWIEWYRFALHALELGRIEASEYATARYVEEQNRVQTRERRAA
Ga0315283_1076337013300032164SedimentMGDAQRLTTWIEWYRFARHALDLGHAEASEYATAR
Ga0315283_1081452133300032164SedimentMGDGQRLTTWIEWYRFARHALELGHSEASEYATARFVEEQNRVHTREWRAA
Ga0315283_1119735023300032164SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRAQTRERRAA
Ga0315283_1208837523300032164SedimentMGDGQRLTTWIEWYRFARVALELDHAEASAYATARYVEEQNRALVRERRAA
Ga0315268_1115144723300032173SedimentMGDGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTRERRAA
Ga0315276_1077224123300032177SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARHVEEQNRVHTSERRAA
Ga0315276_1158814123300032177SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTHERRAA
Ga0315276_1260966513300032177SedimentMSDGQRLTTWIEWYRFARHALELGHAEASAYATARYVEEQNRD
Ga0315271_1010903843300032256SedimentMGDATRLTTWIDWYRFARRALELGHAEASSYATARFVEEQNRTVASEWRAA
Ga0315271_1063259133300032256SedimentLQKGTAMGDGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTRERRAA
Ga0315271_1130860513300032256SedimentIKPPSREATDMGDATRLTTWIDWYRFARRALELSHAEASSYATARFVEEQNRSVAREWRA
Ga0315271_1185733113300032256SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTR
Ga0315286_1053725613300032342SedimentMGDGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQN
Ga0315286_1110290423300032342SedimentMGDEQRLTTWIEWYRFARHALELGHVEASAYATARYVEEQNRDRA
Ga0315287_1080571713300032397SedimentMGDGQRLTTWIEWYRFARRAIELGHAEASSYATAR
Ga0315287_1145199513300032397SedimentRLTTWIEWYRFARRALELGHAEASSYATARYVEEQNRDLAREWRAA
Ga0315287_1151694823300032397SedimentMGDATRLTTWIDWYRFARRALELGHAEASSYATARYVEEQNRTVASEWRAA
Ga0315275_1076325723300032401SedimentMGDGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRLLTHERRAA
Ga0315275_1264698333300032401SedimentGDGQRLTTWIEWYRFARHALELGHAEASAYATARYVEEQNRDLAREWRAA
Ga0315273_1134303233300032516SedimentMGDGQRLTTWIEWYRFARRALELGQTEASSYATARYVEEQNRVLVRERRAA
Ga0315273_1264146313300032516SedimentMADGQRLTTWIEWYRFARHALELGRIEASEYATARYVEEQNRAQT
Ga0316598_243958_8_1633300034652Untreated Peat SoilMGDGQKLTTWIEWYRFARRALELGHTEASSYATARFVEEQNRVGIRERRAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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