Metagenome / Metatranscriptome Family F041333

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041333
Family Type	Metagenome / Metatranscriptome
Number of Sequences	160
Average Sequence Length	67 residues
Representative Sequence	MVAEVRDFSPETVRNMQVALDLAWSSLSPEQQAQSSKSSLATRILDAAEAGERSPARLLMLALMSA
Number of Associated Samples	72
Number of Associated Scaffolds	160

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.03 %
% of genes near scaffold ends (potentially truncated)	33.75 %
% of genes from short scaffolds (< 2000 bps)	77.50 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.750 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (34.375 % of family members)
Environment Ontology (ENVO)	Unclassified (65.625 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.94% β-sheet: 0.00% Coil/Unstructured: 51.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
a.204.1.1: Type II deoxyuridine triphosphatase	d1w2ya_	1w2y	0.70823
a.74.1.0: automated matches	d3mi9b1	3mi9	0.68378
a.5.1.1: DNA helicase RuvA subunit, C-terminal domain	d1ixsa_	1ixs	0.67537
f.49.1.1: Proton glutamate symport protein	d7ahka1	7ahk	0.67039
a.211.1.0: automated matches	d2r8qa_	2r8q	0.66648

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF04392	ABC_sub_bind	5.62
PF13545	HTH_Crp_2	2.50
PF02518	HATPase_c	2.50
PF02586	SRAP	1.88
PF00313	CSD	1.88
PF06863	DUF1254	1.88
PF09084	NMT1	1.25
PF09361	Phasin_2	1.25
PF09265	Cytokin-bind	1.25
PF01272	GreA_GreB	1.25
PF02622	DUF179	1.25
PF09955	DUF2189	1.25
PF00496	SBP_bac_5	0.62
PF09070	PFU	0.62
PF11752	DUF3309	0.62
PF08666	SAF	0.62
PF03449	GreA_GreB_N	0.62
PF02567	PhzC-PhzF	0.62
PF08281	Sigma70_r4_2	0.62
PF00571	CBS	0.62
PF00383	dCMP_cyt_deam_1	0.62
PF08332	CaMKII_AD	0.62
PF03781	FGE-sulfatase	0.62
PF01575	MaoC_dehydratas	0.62
PF03060	NMO	0.62
PF00118	Cpn60_TCP1	0.62
PF04226	Transgly_assoc	0.62
PF00589	Phage_integrase	0.62
PF07536	HWE_HK	0.62
PF09994	DUF2235	0.62
PF09939	DUF2171	0.62
PF07883	Cupin_2	0.62
PF13676	TIR_2	0.62
PF12697	Abhydrolase_6	0.62
PF01988	VIT1	0.62
PF08734	GYD	0.62
PF13596	PAS_10	0.62
PF00216	Bac_DNA_binding	0.62
PF02515	CoA_transf_3	0.62

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.62
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	1.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.88
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.88
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.25
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.25
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	1.25
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.25
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.62
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.62
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.62
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.62
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.62
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.62
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.62
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.62
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.62
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.62
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.62
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.62
COG4875	Protein kinase association domain CaMKII_AD, NTF2-like superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
All Organisms	root	All Organisms	46.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
cellular organisms	root	All Organisms → cellular organisms	46.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.25 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.25 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.12 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.25 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.12 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.25 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.25 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.62 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.12 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.25 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.25 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.62 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.62 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.62 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.62 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.12 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.25 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.62 %
Bradyrhizobiaceae bacterium PARB1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium PARB1	0.62 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.62 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.62 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.62 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	0.62 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.12 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1.25 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.25 %
Bradyrhizobium sp. 179	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 179	0.62 %
Nitrobacter sp. 62-13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. 62-13	0.62 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	0.62 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.62 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.62 %
Bradyrhizobiaceae bacterium PARB1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium PARB1	0.62 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.62 %
Bradyrhizobium guangxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9210575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1343	Open in IMG/M
2088090015\|GPICI_9264786	Not Available	1626	Open in IMG/M
2228664021\|ICCgaii200_c1099692	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
2228664022\|INPgaii200_c1147781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1010307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1508	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1044111	Not Available	688	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10016496	Not Available	2028	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10017274	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1981	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10160244	Not Available	538	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10000573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7317	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1000265	All Organisms → cellular organisms → Bacteria → Proteobacteria	4535	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1005349	Not Available	1330	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1006286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1235	Open in IMG/M
3300000890\|JGI11643J12802_10298347	Not Available	514	Open in IMG/M
3300000956\|JGI10216J12902_100642821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2716	Open in IMG/M
3300000956\|JGI10216J12902_110024916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 179	1322	Open in IMG/M
3300001431\|F14TB_100655574	All Organisms → cellular organisms → Bacteria → Proteobacteria	2242	Open in IMG/M
3300003659\|JGI25404J52841_10126627	Not Available	539	Open in IMG/M
3300003911\|JGI25405J52794_10030657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium PARB1	1116	Open in IMG/M
3300003911\|JGI25405J52794_10058217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300004267\|Ga0066396_10100857	Not Available	533	Open in IMG/M
3300004268\|Ga0066398_10053337	Not Available	825	Open in IMG/M
3300004633\|Ga0066395_10039127	All Organisms → cellular organisms → Bacteria → Proteobacteria	2033	Open in IMG/M
3300004633\|Ga0066395_10064369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1668	Open in IMG/M
3300004633\|Ga0066395_10463076	Not Available	725	Open in IMG/M
3300004633\|Ga0066395_10485060	Not Available	710	Open in IMG/M
3300004633\|Ga0066395_10688272	Not Available	606	Open in IMG/M
3300005332\|Ga0066388_100039183	All Organisms → cellular organisms → Bacteria	4646	Open in IMG/M
3300005332\|Ga0066388_100040771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4586	Open in IMG/M
3300005332\|Ga0066388_100496805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1857	Open in IMG/M
3300005332\|Ga0066388_100968681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1419	Open in IMG/M
3300005332\|Ga0066388_101252994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. 62-13	1273	Open in IMG/M
3300005332\|Ga0066388_101643042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1133	Open in IMG/M
3300005332\|Ga0066388_102489998	Not Available	940	Open in IMG/M
3300005332\|Ga0066388_105018571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300005332\|Ga0066388_107760003	Not Available	537	Open in IMG/M
3300005436\|Ga0070713_100049097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3479	Open in IMG/M
3300005713\|Ga0066905_100170356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1593	Open in IMG/M
3300005713\|Ga0066905_100174691	Not Available	1577	Open in IMG/M
3300005713\|Ga0066905_100215318	Not Available	1448	Open in IMG/M
3300005713\|Ga0066905_100334302	Not Available	1204	Open in IMG/M
3300005713\|Ga0066905_100543103	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300005713\|Ga0066905_100623943	Not Available	916	Open in IMG/M
3300005713\|Ga0066905_100633330	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005713\|Ga0066905_100775533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300005713\|Ga0066905_101180354	Not Available	683	Open in IMG/M
3300005713\|Ga0066905_101368441	Not Available	639	Open in IMG/M
3300005713\|Ga0066905_101402052	Not Available	632	Open in IMG/M
3300005713\|Ga0066905_101651683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300005713\|Ga0066905_102253032	Not Available	509	Open in IMG/M
3300005764\|Ga0066903_100141491	All Organisms → cellular organisms → Bacteria	3424	Open in IMG/M
3300005764\|Ga0066903_100458360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2135	Open in IMG/M
3300005764\|Ga0066903_101475834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1282	Open in IMG/M
3300005764\|Ga0066903_101888797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300005764\|Ga0066903_102006734	Not Available	1111	Open in IMG/M
3300005764\|Ga0066903_104058425	Not Available	784	Open in IMG/M
3300005764\|Ga0066903_106018800	Not Available	635	Open in IMG/M
3300005764\|Ga0066903_106356209	Not Available	617	Open in IMG/M
3300005937\|Ga0081455_10007949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11092	Open in IMG/M
3300005937\|Ga0081455_10009047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10281	Open in IMG/M
3300005937\|Ga0081455_10017351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6907	Open in IMG/M
3300005937\|Ga0081455_10166929	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300005937\|Ga0081455_10796511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300006058\|Ga0075432_10018652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2367	Open in IMG/M
3300006175\|Ga0070712_101673764	Not Available	557	Open in IMG/M
3300006852\|Ga0075433_10813863	Not Available	816	Open in IMG/M
3300006852\|Ga0075433_11486995	Not Available	585	Open in IMG/M
3300006903\|Ga0075426_11330095	Not Available	545	Open in IMG/M
3300009011\|Ga0105251_10236762	Not Available	822	Open in IMG/M
3300009100\|Ga0075418_10944749	Not Available	932	Open in IMG/M
3300009162\|Ga0075423_10901974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	937	Open in IMG/M
3300009168\|Ga0105104_10429765	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300009792\|Ga0126374_10070821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1864	Open in IMG/M
3300009792\|Ga0126374_10144559	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300009792\|Ga0126374_11659589	Not Available	530	Open in IMG/M
3300010043\|Ga0126380_10000037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26769	Open in IMG/M
3300010043\|Ga0126380_10001788	Not Available	8301	Open in IMG/M
3300010043\|Ga0126380_10017782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3350	Open in IMG/M
3300010043\|Ga0126380_10022340	Not Available	3062	Open in IMG/M
3300010043\|Ga0126380_10087268	Not Available	1829	Open in IMG/M
3300010043\|Ga0126380_10404507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1015	Open in IMG/M
3300010043\|Ga0126380_10716468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	807	Open in IMG/M
3300010046\|Ga0126384_10100381	All Organisms → cellular organisms → Bacteria → Proteobacteria	2134	Open in IMG/M
3300010046\|Ga0126384_12201339	Not Available	531	Open in IMG/M
3300010046\|Ga0126384_12437470	Not Available	507	Open in IMG/M
3300010047\|Ga0126382_10156743	Not Available	1567	Open in IMG/M
3300010047\|Ga0126382_10300826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1204	Open in IMG/M
3300010047\|Ga0126382_10303336	Not Available	1200	Open in IMG/M
3300010047\|Ga0126382_10716190	Not Available	841	Open in IMG/M
3300010047\|Ga0126382_11135541	Not Available	695	Open in IMG/M
3300010047\|Ga0126382_11553296	Not Available	611	Open in IMG/M
3300010047\|Ga0126382_11866133	Not Available	567	Open in IMG/M
3300010048\|Ga0126373_12360158	Not Available	592	Open in IMG/M
3300010048\|Ga0126373_12387682	Not Available	589	Open in IMG/M
3300010358\|Ga0126370_10055157	All Organisms → cellular organisms → Bacteria → Proteobacteria	2549	Open in IMG/M
3300010358\|Ga0126370_10363080	Not Available	1175	Open in IMG/M
3300010358\|Ga0126370_12543765	Not Available	511	Open in IMG/M
3300010359\|Ga0126376_10381453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1262	Open in IMG/M
3300010359\|Ga0126376_11851924	Not Available	642	Open in IMG/M
3300010360\|Ga0126372_10072794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2455	Open in IMG/M
3300010360\|Ga0126372_10410346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1240	Open in IMG/M
3300010360\|Ga0126372_10666130	Not Available	1010	Open in IMG/M
3300010360\|Ga0126372_10731941	Not Available	970	Open in IMG/M
3300010360\|Ga0126372_10922627	Not Available	878	Open in IMG/M
3300010360\|Ga0126372_11056288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	828	Open in IMG/M
3300010361\|Ga0126378_10724243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1106	Open in IMG/M
3300010361\|Ga0126378_10887451	Not Available	999	Open in IMG/M
3300010362\|Ga0126377_10025174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4953	Open in IMG/M
3300010366\|Ga0126379_10003344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10359	Open in IMG/M
3300010366\|Ga0126379_11997569	Not Available	682	Open in IMG/M
3300010366\|Ga0126379_12689396	Not Available	594	Open in IMG/M
3300010376\|Ga0126381_104357570	Not Available	548	Open in IMG/M
3300010396\|Ga0134126_12538309	Not Available	557	Open in IMG/M
3300010397\|Ga0134124_10224278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangxiense	1717	Open in IMG/M
3300010398\|Ga0126383_10667755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300010400\|Ga0134122_10620850	Not Available	1002	Open in IMG/M
3300010863\|Ga0124850_1026490	Not Available	1862	Open in IMG/M
3300012497\|Ga0157319_1009546	Not Available	765	Open in IMG/M
3300012508\|Ga0157315_1038908	Not Available	594	Open in IMG/M
3300012948\|Ga0126375_10012432	All Organisms → cellular organisms → Bacteria → Proteobacteria	3668	Open in IMG/M
3300012948\|Ga0126375_10015404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3402	Open in IMG/M
3300012948\|Ga0126375_10133351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1537	Open in IMG/M
3300012948\|Ga0126375_10931076	Not Available	701	Open in IMG/M
3300012948\|Ga0126375_11400790	Not Available	593	Open in IMG/M
3300012971\|Ga0126369_10009912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7263	Open in IMG/M
3300012971\|Ga0126369_11306492	Not Available	815	Open in IMG/M
3300013297\|Ga0157378_10614852	Not Available	1099	Open in IMG/M
3300015371\|Ga0132258_10495150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3055	Open in IMG/M
3300015371\|Ga0132258_11444303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1737	Open in IMG/M
3300015371\|Ga0132258_12077403	All Organisms → cellular organisms → Bacteria → Proteobacteria	1428	Open in IMG/M
3300015372\|Ga0132256_101807487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300015373\|Ga0132257_100677222	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300015373\|Ga0132257_104467786	Not Available	509	Open in IMG/M
3300016294\|Ga0182041_11858734	Not Available	559	Open in IMG/M
3300016341\|Ga0182035_10640153	Not Available	922	Open in IMG/M
3300016422\|Ga0182039_10557317	Not Available	997	Open in IMG/M
3300021560\|Ga0126371_10168095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2268	Open in IMG/M
3300021560\|Ga0126371_10550135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1303	Open in IMG/M
3300021560\|Ga0126371_11523917	Not Available	796	Open in IMG/M
3300021560\|Ga0126371_11924958	Not Available	710	Open in IMG/M
3300021560\|Ga0126371_13504231	Not Available	530	Open in IMG/M
3300025900\|Ga0207710_10203850	Not Available	978	Open in IMG/M
3300025920\|Ga0207649_10806690	Not Available	733	Open in IMG/M
3300025928\|Ga0207700_10057851	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300025936\|Ga0207670_11041729	Not Available	689	Open in IMG/M
3300027873\|Ga0209814_10000044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31305	Open in IMG/M
3300027874\|Ga0209465_10115102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1324	Open in IMG/M
3300028718\|Ga0307307_10200898	Not Available	631	Open in IMG/M
3300028793\|Ga0307299_10073998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	1265	Open in IMG/M
3300028796\|Ga0307287_10219549	Not Available	721	Open in IMG/M
3300028799\|Ga0307284_10123122	All Organisms → cellular organisms → Bacteria → Proteobacteria	986	Open in IMG/M
3300028828\|Ga0307312_10021211	Not Available	3698	Open in IMG/M
3300030916\|Ga0075386_12055828	Not Available	521	Open in IMG/M
3300031446\|Ga0170820_17504394	Not Available	853	Open in IMG/M
3300031719\|Ga0306917_10291460	Not Available	1259	Open in IMG/M
3300031854\|Ga0310904_11427726	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.50%
Host-Associated	Host-Associated	17.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.88%
Plants	Host-Associated → Plants	17.50%
Aquatic	Environmental → Aquatic	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.50%
Freshwater	Environmental → Aquatic → Freshwater	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.75%
Loam	Environmental → Terrestrial → Soil → Loam	28.12%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.12%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.25%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.25%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.62%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	34.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.25%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	5.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.12%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01674200	2088090015	Soil	VKDMQVAIDLAWSSLSAEQQAQSSKGTLATRILDAAEAGERSPARLLMLALMSASGP
GPICI_01623920	2088090015	Soil	MVAEGRYFAPETVKDMQVALDLAWSSLSPEQQAQSSKTLLARRILDAAAAGERGPARLLMLALRSAPQNAGGYSHRQRRRRG
ICCgaii200_10996924	2228664021	Soil	ETVKDMQVAIDLAWSSLSAEQQAQSSKGTLATRILDAAEAGERSPARLLMLALMSASGP
INPgaii200_11477813	2228664022	Soil	MVAEGRYFAPETVKDMQVALDLAWSSLSPEQQAQSSKTLLARRILDAAAAGERGPARLLMLALRSAPQNAGGYSHR
AF_2010_repII_A01DRAFT_10103072	3300000580	Forest Soil	MAAEDRHFSSETVRDMQVALDLAWSSLTPEQQAQSSKTLLAARILDAAEAGERGPARLLMLALMSARRLSFCYNRVG*
AF_2010_repII_A01DRAFT_10441112	3300000580	Forest Soil	FSPETVKNIQVALDLAWTSLSPEQQAQSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
AF_2010_repII_A1DRAFT_100164962	3300000597	Forest Soil	MQVALEVAWSSLPPQQKVQSNKTLLATRILDAAEAGERSPTRLLMLALMPSIDP*
AF_2010_repII_A1DRAFT_100172743	3300000597	Forest Soil	MAAEGRHFSPETVKNIQVALDLAWTSLSPEQQAQSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
AF_2010_repII_A1DRAFT_101602441	3300000597	Forest Soil	MTEAGHFSPETVRNMQVALDLAWNSLSREQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSAPLALIGHLFLHRI
AF_2010_repII_A001DRAFT_100005732	3300000793	Forest Soil	MATECSHFSSETMRNMQVALEVVEFVTTSQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
AF_2010_repII_A10DRAFT_10002654	3300000816	Forest Soil	MVRNMQLALDLAWSSLSSEQQAQSSKTLLAERIVDAAESGERSPARLLMLALMHTIDP*
AF_2010_repII_A10DRAFT_10053492	3300000816	Forest Soil	MASLGTFMAAEDRHFSSETVRDMQVALDLAWSSLTPEQQAQSSKTLLATRILDAAEAGERGPARLLMLALMSARPLSFCYHKIGCSR*
AF_2010_repII_A10DRAFT_10062862	3300000816	Forest Soil	MAAEARDFSSETVRNMQVALDLAWSSXSPEQXAQSSKMEVATRILDAAEAGERSPARLLMLALLSARPRSFGYNKIG*
JGI11643J12802_102983471	3300000890	Soil	MVAEGRYFAPETVKDMQVALDLAWSSLSPEQQAQSSKTLLARRILDAAAAGERGPARLLMLALRSAPQNAGGYSHRQRRRRG*
JGI10216J12902_1006428212	3300000956	Soil	MVAEVRHFGPETVRNMQVALDLAWSSLSPEQQAQSSKSSLATHILDAAEAGGRSPARLLMLALMSAPGS*
JGI10216J12902_1100249162	3300000956	Soil	MAAEGRHFSPETVKNMQVALDLVWTSLSPEQQAQSSKTMLATRLLDAAEAGERSPARLLMLALMSAS*
F14TB_1006555745	3300001431	Soil	MAAEVRHFSPETVKDMQVAIDLAWSSLSAEQQAQSSKGTLATRILDAAEAGERSPARFLMLALMSASGP*
JGI25404J52841_101266272	3300003659	Tabebuia Heterophylla Rhizosphere	GTSMATEVRQFSPETVKSMQVALDLAWSSLSPEQQAQSSKEMLAARILDAADAGERSPARLLMLALMSASGP*
JGI25405J52794_100306573	3300003911	Tabebuia Heterophylla Rhizosphere	MAAEGRHFSPETVKNMQVALDLAWTSLSPEQQAQSSKTMLATRVLDAAEAGERSPARLLMLALMSASGPIN*
JGI25405J52794_100582171	3300003911	Tabebuia Heterophylla Rhizosphere	AWSSLSPEQQAQSSKTLLATRILDAAEAGVRSPARLLILALMSASSP*
Ga0066396_101008571	3300004267	Tropical Forest Soil	MAAEARDFSSETVRNMQVALDLAWRSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLALLPASGS*
Ga0066398_100533372	3300004268	Tropical Forest Soil	MAAEGRHFSPETVRSMQVALDLAWSSLSPEEQAQSSRTLLATRILDAAEAGERSPARLVMLALMSASGS*
Ga0066395_100391275	3300004633	Tropical Forest Soil	ETVRDMQVALDLAWGSLTPEQQAQSSKALLATRIFNAAESGERSPARLLTLARMSARPLSFCYNKIG*
Ga0066395_100643691	3300004633	Tropical Forest Soil	MAAEARDFSSETVRNMQVALDLAWRSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLAL
Ga0066395_104630762	3300004633	Tropical Forest Soil	MTEAAHFSPETVRNMQVVLDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0066395_104850602	3300004633	Tropical Forest Soil	MAAEGRHFSPETVKNIQVALDLAWTSLSPEQQAHSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
Ga0066395_106882721	3300004633	Tropical Forest Soil	MAAEGRHFSLETVINMQIATDVAWSSLSPEQQSQSSKMLLATRILDVVEAGERSPARLVMLALMSA*
Ga0066388_1000391835	3300005332	Tropical Forest Soil	MPAECRDFSSETMRNMQVALEVAWGSLPPQQKVQSNKRLLATRILDAAEAGERSPARLLMLALTPSIEP*
Ga0066388_1000407711	3300005332	Tropical Forest Soil	MLMATECRHFSSETMRNMQVALEVAWSSLPPQQKVQSNKTLLATRILDAAEAGERSPTRLLMLALMPSIDP*
Ga0066388_1004968052	3300005332	Tropical Forest Soil	MAAEGRHFSPETVKNIQVALDLAWTSLPPEKQTQSSKTMLATRILNAAEAGERSPARLLMLALMSASGPTN*
Ga0066388_1009686812	3300005332	Tropical Forest Soil	MSTQCRHFSPEAVKNIQAVLDLAWRSLSPEQQLQSNKTLLATRILDAAEAGERSPARLLMLALMPAIDP*
Ga0066388_1012529941	3300005332	Tropical Forest Soil	METVMAAEVSYFSLETVRSMQVALDLAWNSLSSEQQAHSSKTSLATRILDAAEAGERSPARLLMLALSSASDH*
Ga0066388_1016430424	3300005332	Tropical Forest Soil	MQVAVDVAWGSLTPEQQAQSNKTVLATRILDAAAAGERSPARLVRLALMSASGS*
Ga0066388_1024899982	3300005332	Tropical Forest Soil	MASLGTFMAAEDRHFSSETVRDMQVALDLAWSSLTPEQQAQSSKTLLAARILDAAEAGERGPARLLMLALMSARRLSFCYNRVG*
Ga0066388_1031846251	3300005332	Tropical Forest Soil	MASLGTVMAAEVRHFSPESMRNVQVALDLAWRSLSPEQQAHSSKTSLATRILDAAEAGER
Ga0066388_1050185711	3300005332	Tropical Forest Soil	MQVAVDVAWNSLTPEQRAQSSKTSLATRILDAAAAGERSPARLVRLALMSAS
Ga0066388_1077600031	3300005332	Tropical Forest Soil	MQVAFEVGWSSLPPQQKVQLNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0070713_1000490975	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MATECRHFSSETVRNMQVALDLAWSSLSPEQQVQSSKTLLATRILDAAEAGERSPARLLMLGADACY*
Ga0066905_1001703562	3300005713	Tropical Forest Soil	MQVALDLAWSSLSPEQQAQSSKSSLATCILDAAEAGERSPARLLMLALTSASSP*
Ga0066905_1001746912	3300005713	Tropical Forest Soil	MLKAANQNELSAETVRNMQIALDLAWSSLSPEQRAQSSKTLFATRIVDAAEAGERSTARLLVLALTPAIGP*
Ga0066905_1002153183	3300005713	Tropical Forest Soil	VSETSLDTVRDMQVALDLAWGSLSPEQQAHSSKTSLATRILDAAEAGERSPARLVMLALMSASGA*
Ga0066905_1003343023	3300005713	Tropical Forest Soil	VKDIQVALDLAWTLLSPEQQAQSSKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
Ga0066905_1005431031	3300005713	Tropical Forest Soil	FMAAEGRDFSPETVRNMQVAVDLAWTSLSPEQQAQSSKTILATRILDAVEAGERSPARLVILALMSVSSP*
Ga0066905_1006239431	3300005713	Tropical Forest Soil	VSVGEDKQLSLDTVRDMQVALDLVWSSLTPEQQAQSSKTLLATRILDAAEAGERSPARLVMLALMSARPLSFCYNKIG*
Ga0066905_1006333301	3300005713	Tropical Forest Soil	MVAEVRDFSPETVRNMQVALDLAWSSLSPEQQAQSSKSSLATRILDAAEAGERSPARLLMLALMSA
Ga0066905_1007755332	3300005713	Tropical Forest Soil	MQVAIDLAWNSLTPEQQMQSNKTVLSTRILDAVAAGERSPARLVRLALMSASGS*
Ga0066905_1011803541	3300005713	Tropical Forest Soil	FMAAEGRDFSPETVRNMQVAVDLAWTSLSPEQQAQSSKTMLATRILDAVEAGERSPARLVMLALKSASGYWRAGCPLRPGG*
Ga0066905_1013684411	3300005713	Tropical Forest Soil	MAAEGRHFSPETVKNMQVALDLAWTSLSPEQQAQSSKTTLATRILDAAEAGERSPARLLMLALMSAGPYGGKTTSMRHG*
Ga0066905_1014020522	3300005713	Tropical Forest Soil	MASLGTVMAAEVRHFSPESMRNVQVALDLAWRSLSPEQQAHSSKTSLATRILDAAEAGERSPARLLMLALMSASDR*
Ga0066905_1016516832	3300005713	Tropical Forest Soil	LFLGALMAAEGRHFSPETVRSMQVALDLAWSLLSPEQQVQSNRTLLATRILDAAEAGERSPARLLMLALMPAIGP*
Ga0066905_1022530321	3300005713	Tropical Forest Soil	MDFSLETVRNMQVAVDLAWTSLSPEQQAQSSKTTLATRILDAAEAGERSPARLVMLALKSASGH*
Ga0066903_1001414916	3300005764	Tropical Forest Soil	MQVALDLAWSSLSPEQQSQSSKMEVATRILNATEAGERSPARFLMLALLSASGP*
Ga0066903_1004583602	3300005764	Tropical Forest Soil	LGTFIAAEDRHFSFETVRDMQVALDLAWGSLTPEQQAQSSKALLATRIFNAAESGERSPARLLTLARMSARPLSFCYNKIG*
Ga0066903_1014758343	3300005764	Tropical Forest Soil	LGTFVTAEGRHFSLETVRNVQLATDVAWSSLSPEQQTQSSKTLLATRILDAAEAGERSPARLVTLALMSAIGGKADMG*
Ga0066903_1018887972	3300005764	Tropical Forest Soil	MASLGTFMAAEDRHFSSETVRDMQVALDLAWSSLTPEQQAQSSKTVLATRILDAAEAGERGPARLLMLALMSARPLSFCYNKIG*
Ga0066903_1020067342	3300005764	Tropical Forest Soil	PETVRDMQVALDLAWGSLSPEQQAQSSKTAVATRILDADEAGERSPARLLMLALMSASGL
Ga0066903_1040584251	3300005764	Tropical Forest Soil	MAAEDRHFSSASVRDMQVALDLAWSSLSPEEQAQSSKTLLATRILNAAEAGERSPTRLLILAMMSARPLSFGYNKIADSL*
Ga0066903_1060188002	3300005764	Tropical Forest Soil	FSSETVRDMQVALDVAWSSLTPEQQARSSKTLLATRILDAAEAGERSPARLLMLALMSARRFPSATIRLGDSL*
Ga0066903_1063562091	3300005764	Tropical Forest Soil	MATECRNLSSETVRNMQLALDLAWSSLSSEQQAQSSKTLLAERIVDAAESGERSPARLLMLALMPTIDP*
Ga0081455_1000794919	3300005937	Tabebuia Heterophylla Rhizosphere	MAAEGRHFSPETVKNMQVALDLAWTSLSPEQQAQSSKTMLATRVLDAAEAGERSPARLLMLALMSASGPTN*
Ga0081455_100090479	3300005937	Tabebuia Heterophylla Rhizosphere	MVAEVRDFSPETVRNMQVALDLAWRSLSPEQQAQSSKSSLATRILDAAEAGERSPARLLMLALMSASDAVDGSSIGT*
Ga0081455_100173513	3300005937	Tabebuia Heterophylla Rhizosphere	MVAEVRHFGPETVRDMQVALDLAWGSLSPEQQAQSSKSSLATRILDAAEAGERSPARLLMLALTSASSP*
Ga0081455_101669293	3300005937	Tabebuia Heterophylla Rhizosphere	MAAEGRHFSTETVKNMQVALDLAWSSLSPEQQAQSSKTLLATRILDAAEAGERSPARLLILALMSSSSP*
Ga0081455_105404651	3300005937	Tabebuia Heterophylla Rhizosphere	VVKAAYPNGLGAETVRNMQVALDLAWSSLSPEQRAQSSKTLLATRILDAAEAGKRSTARLILLALMPAIDP*
Ga0081455_107965111	3300005937	Tabebuia Heterophylla Rhizosphere	ETVRNMQVALDLAWRSLSPEQQAQSSKSSLATRILDAAEAGERRPARLLMLALMSASGP*
Ga0075432_100186524	3300006058	Populus Rhizosphere	MAAEVRHFSPETVKDMQVAIDLAWSSLSAEQQAQSSKGTLATRILDAAEAGERSPARLLMLALMSASGP*
Ga0070712_1016737642	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EDRISLGYLGTFMATECRHFSSETVRNMQVALDLAWSSLSPEQQVQSSKTLLATRILDAAEAGERSPARLLMLGADACY*
Ga0075433_108138631	3300006852	Populus Rhizosphere	MAAEGRHFSPDTVKNMQVALDLVWTSLSPEQQAQSSKTMLATRLLDAAEAGERSPARLLMLALMSAS*
Ga0075433_114869952	3300006852	Populus Rhizosphere	LGTFMVAEVRHFGPETVRNMQVALDLAWSSLSPEQQAQSSKSSLATHILGAAEAGGRSPARLLMLALMSAPGS*
Ga0075426_113300951	3300006903	Populus Rhizosphere	TDAGRAFWQNKKLDGSLGTSMAAEDRHFSPETVKNMQVALDLAWTSLSPEQQKQSSKTTLATRIIDAAEAGERSPARLLMLALMSAS*
Ga0105251_102367621	3300009011	Switchgrass Rhizosphere	HFSPETVRSMPVALDLAWSSFSPEQQSQSSRMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0075418_109447491	3300009100	Populus Rhizosphere	MQVALDLAWSSLSPEQQAQSSKSSLATHILDAAEAGGRSPARLLMLALMSAPGS*
Ga0075423_109019741	3300009162	Populus Rhizosphere	MQVALDLAWSSLSPEQQAQSSKSSLATHILGAAEAGGRSPARLLMLALMSAPGS*
Ga0105104_104297651	3300009168	Freshwater Sediment	MQVALDLAWSSLSPEQQAQSSKSSLATRILDAAEAGERSPARLLMLALMSASGP*
Ga0126374_100708214	3300009792	Tropical Forest Soil	MATECNHFSSETMRNMQVALEVGWSSLPPQQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126374_101445592	3300009792	Tropical Forest Soil	MAAEGRHFSPETVKNIQVALDLAWTSLSPEQQARSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
Ga0126374_116595892	3300009792	Tropical Forest Soil	AAEGRHFSLETVINMQIATDVAWSSLSPEQQSQSSKMLLATRILDVVEAGERSPARLVMLALMSA*
Ga0126380_1000003718	3300010043	Tropical Forest Soil	MAAEARDFSSETVRNMQVALDLAWRSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLALLPASGP*
Ga0126380_100017883	3300010043	Tropical Forest Soil	MAAEGRHFSTETVKNMQVALDLAWSSLSPEQQAQSSKTLLATRMLDAAEAGERSPARLLILALMSSSSP*
Ga0126380_100177824	3300010043	Tropical Forest Soil	MAAEDRRFSSETVRDMQVALDVAWSSLTPEQQARSSKTLLATRILDAAEAGERSPARLLMLALMSARRFPSATIRLGDSL*
Ga0126380_100223402	3300010043	Tropical Forest Soil	MAAEGRDFSPETVRNMQVAVDLAWTSLSPEQQAQSSKTILATRILDAVEAGERSPARLVMLALKSASGYWRAGCPLRPGG*
Ga0126380_100872683	3300010043	Tropical Forest Soil	MAAEGRHFSPETVKNMQVALDLAWTSLSPEQQSQSSKTTLATRILDAAEAGERSPARLLLLALMSASGPYVGNKRH*
Ga0126380_104045072	3300010043	Tropical Forest Soil	MATECSHFSSEAMRNMQVALEVGWSSLPPQQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126380_107164681	3300010043	Tropical Forest Soil	MQVALDLAWSSLSPEEQAQSSRTLLATRILDAAEAGERSPARLVMLALMSASGP*
Ga0126384_101003813	3300010046	Tropical Forest Soil	MQVALDLAWSLLSPEQQVQSNRTLLATRILDAAEAGERSPARLLMLALMPAIGP*
Ga0126384_122013391	3300010046	Tropical Forest Soil	MQVVLDLAWRSLSPEQQLQSNKTLLATRILDAAEAGERSPARLLMLALMPAIDP*
Ga0126384_124374701	3300010046	Tropical Forest Soil	MQVALDLAWSSLSPEQQVQSNKTLLATRIIDAAEAGERSPARLLMLALMPAI
Ga0126382_101094722	3300010047	Tropical Forest Soil	VVKAAYPNGLGAETVRNMQVALDLAWSSLSPEQRAQSSKTLLATRILDAAEAGERSTARLILRALMPAIDP*
Ga0126382_101567433	3300010047	Tropical Forest Soil	MTEAGHFSPEIVRNMQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0126382_103008262	3300010047	Tropical Forest Soil	MQVALDLAWSSLSPEEQAQSSRTLLATRILDAAEAGERSPARLVMLALMSASGS*
Ga0126382_103033362	3300010047	Tropical Forest Soil	MAAEGRDFSPETVRNMQVAVDLAWTSLSPEQQAQSSKTILATRILDAVEAGERSPARLVILALMSVSSP*
Ga0126382_107161901	3300010047	Tropical Forest Soil	MQVALDLAWGSLSPEQQAHSSKTSLATRILDAAEAGERSPARLVMLALMSASGA*
Ga0126382_111355411	3300010047	Tropical Forest Soil	TFMAGEDKHFSSETVRDMQVALDLAWSSLSPEEQSQSSKTVLATRILSAAEAGERSPARLLLLALTSARPLSSCYSKTADSL*
Ga0126382_115532961	3300010047	Tropical Forest Soil	HFSPETVKNMQVALDLAWTSLSPEQQAQSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
Ga0126382_118661331	3300010047	Tropical Forest Soil	MAAEGRHFSTETVKNMQVALDLAWSSLSPEQQAQSSKTLLATRILDAAEAGERSPARLLILALMSSSSP
Ga0126373_123601582	3300010048	Tropical Forest Soil	MQLALDLAWSSLSSEQQAQSSKTLLAERIVDAAESGERSPARLLMLALMPTIDP*
Ga0126373_123876821	3300010048	Tropical Forest Soil	MAAEGRHFSLETVINMQIATDVAWRSLSPEQQSQSSKMLLATRILDVVEAGERSPARLVMLALMSA*
Ga0126370_100551574	3300010358	Tropical Forest Soil	MATECSHFSSETMRNMQVALEVGWSSLPPQQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126370_103630803	3300010358	Tropical Forest Soil	MTEAGHFSPETVRNMQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0126370_125437652	3300010358	Tropical Forest Soil	LETLMATECSHFSSETMRNMQVALEVGWSSLPPQKKVQSNKTLLATRILDAAEAGERSPTRLLMLALMPSIDP*
Ga0126376_103814533	3300010359	Tropical Forest Soil	MQVALEVAWSSLPPQQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126376_118519241	3300010359	Tropical Forest Soil	AAEDRHFSTETVRDMQVALDLAWSSLSPEEQAQSSKTMLATRILDAVEAGERSPARLVMLALKSASGYWRAGCPLRPGG*
Ga0126372_100727941	3300010360	Tropical Forest Soil	MRDVQVALDLAWSSLSADQRAQSSKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126372_104103461	3300010360	Tropical Forest Soil	MAAEGRHFSLETVINMQIATDVAWSSLSPEQQSQSSKMLLATRILDVVEAGERSPARLVMLALTSASGP*
Ga0126372_106661302	3300010360	Tropical Forest Soil	AWSSLPPQQKVQSNKTLLATRILDAAEAGERSPTRLLMLALMPSIDP*
Ga0126372_107319412	3300010360	Tropical Forest Soil	MQVALDLAWSSLSPEQQAQSSKTLLAARILDAAEAGERGPARLLMLALMSARRLSFCYNRVG*
Ga0126372_109226272	3300010360	Tropical Forest Soil	MQVALEVGWSSLPPQQKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126372_110562882	3300010360	Tropical Forest Soil	VSVGENKQLSLTTVKNIQVAVDVAWDSLTPEQRAQSSKTSLATRILDAAAAGERSPARLVRLALMSASGS*
Ga0126378_107242432	3300010361	Tropical Forest Soil	MRDVQVALDLAWSSLSADQRAQSSKTLLATRILDAAEAGERSPARLLMLALMPAIDP*
Ga0126378_108874512	3300010361	Tropical Forest Soil	MAAEARDFSSETVRNMQVALDLAWRSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLALLPARPRSFGYNKIG*
Ga0126377_100251742	3300010362	Tropical Forest Soil	MQVALDLAWSSLSPEQQAQSSKEMLAARILDAADAGERSPARLLMLALMSASGP*
Ga0126379_1000334414	3300010366	Tropical Forest Soil	MATECRHFSSETMRNMQVALEVAWSSLPPQQKVQSNKTLLATRILDAAEAGERSPTRLLMLALMPSIDP*
Ga0126379_119975692	3300010366	Tropical Forest Soil	SLGTLMAAEGRHFSPETVKNIQVALDLAWTSLSPEQQAHSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN*
Ga0126379_126893961	3300010366	Tropical Forest Soil	ETVRDMQVALDVAWSSLTPEQQARSSKTLLATRILDAAEAGERSPARLLMLALMSARRFPSATIRLGDSL*
Ga0126381_1043575702	3300010376	Tropical Forest Soil	ETVRDMQVALDLAWGSLSPEQQAQSSKTAVATRILDAAKAGERSPARLLMLALMSASGL*
Ga0134126_125383091	3300010396	Terrestrial Soil	GHFSPETVRNMQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0134124_102242783	3300010397	Terrestrial Soil	MTEAGQFSPETGRNMQVALDLAWSSFSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0126383_106677553	3300010398	Tropical Forest Soil	VQLATDVAWSSLSPEQQTQSSKTLLATRILDAAEAGERSPARLVTLALMSAIGGKADMG*
Ga0134122_106208503	3300010400	Terrestrial Soil	RSMQVALDLAWSSFSPEQQSQPSRMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0124850_10264901	3300010863	Tropical Forest Soil	ETVRDMQVALDLAWGSLSPEQQAQSSKTAVAKRILDAAEAGERSPARLLMLALMSASGP*
Ga0157319_10095461	3300012497	Arabidopsis Rhizosphere	MQVALDLAWSSFSPEQQSQSSRMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0157315_10389081	3300012508	Arabidopsis Rhizosphere	ETVRNMQVALDLAWTSLSPEQQAHSNKTMLATRILDAAETGERSPARFLMLALLSASGP*
Ga0126375_100124322	3300012948	Tropical Forest Soil	MAAEGRHFRPETVRSMQVALDLAWSSLSPEEQAQSSRTLLATRILDAAEAGERSPARLVMLALMSASGP*
Ga0126375_100154041	3300012948	Tropical Forest Soil	MATECSHFSSETMRNMQVALEVGWSSLPPQKKVQSNKTLLATRILDAAEAGERSPARLLMLALMPSIDP*
Ga0126375_101333513	3300012948	Tropical Forest Soil	MATEVRQFSPETVKSMQVALDLAWSSLSPEQQAQSSKEMLAARILDAADAGERSPARLLMLALMSASGP*
Ga0126375_107785902	3300012948	Tropical Forest Soil	MAAEGRHFSPETVKNIQVALDLAWTSLPPEKQTQSSKTMLATRILNAAEAGERSP
Ga0126375_109310761	3300012948	Tropical Forest Soil	MAAEGRHFSPETVKNMQVALDLAWTSLSPEQQAQSSKTTLATRILDAAEAGERSPARLLLLALMSA
Ga0126375_114007901	3300012948	Tropical Forest Soil	MAAEGRDFSPETVRNMQVAVDLAWTSLSPEQQAQSSKTILATRILDAAEAGERSPARLVM
Ga0126369_100099128	3300012971	Tropical Forest Soil	MQVALDLAWSSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLALLPASGS*
Ga0126369_113064921	3300012971	Tropical Forest Soil	MTEAAHFSPETVRNMQVVLDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARLLMLALLSDSGP*
Ga0157378_106148521	3300013297	Miscanthus Rhizosphere	MAAEGAHFSSGTVRNMQVALDVAWSSLSPEQQTQSSKMLLATRILDAAEAGERSPARLLMLALSGSLH*
Ga0132258_104951504	3300015371	Arabidopsis Rhizosphere	MQVALDLAWTSLSPEQQAHSNKTMLATRILDAAETGERSPARLLMLALMSASGPTN*
Ga0132258_114443031	3300015371	Arabidopsis Rhizosphere	MTEAGHFSPETVRNMQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLML
Ga0132258_120774032	3300015371	Arabidopsis Rhizosphere	MAAEDRHFSPETVKNMQVALDLAWTSLSPEQQKQSSKTTLATRIIDAAEAGERSPARLLMLALMSASSATN*
Ga0132256_1018074871	3300015372	Arabidopsis Rhizosphere	MAAEDRHFSPEAVKNMQVALDLAWTSLSPEQQKQSSKTTLATRIIDAAEAGERSPARLLM
Ga0132257_1006772221	3300015373	Arabidopsis Rhizosphere	MQVALDLAWSSFSPEQQSQSSRMEVATRILNAAEAGERSPARFLMLALL
Ga0132257_1044677861	3300015373	Arabidopsis Rhizosphere	EAGHFSPETVRNKQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
Ga0182041_118587341	3300016294	Soil	ETVRDMQVALDLAWGLLSPQQQAQSSKTAVATRILDAVGAGERSPARLLTLALMSASGP
Ga0182035_106401531	3300016341	Soil	LMAAEARYFSPETVRDMQVALDLAWGLLSPQQQAQSSKTAVATRILDAVGAGERSPARLLTLALMSASGP
Ga0182039_105573172	3300016422	Soil	MAAEARYFSPETVRDMQVALNLAWGLLSPQQQAQSSKTAVATRILDAVGAGERSPARLLTLALMSASGP
Ga0126371_101680951	3300021560	Tropical Forest Soil	MAAEARDFSSETVRNMQVALDLAWRSLSPEQQARSSKMEVATRILDAAEAGERSPARLLMLALMSARPLSSATIRLGDSL
Ga0126371_105501352	3300021560	Tropical Forest Soil	MRDVQVALDLAWSSLSADQRAQSSKTLLATRILDAAEAGERSPARLLMLALMPAIDP
Ga0126371_115239171	3300021560	Tropical Forest Soil	NIQVALDLAWTSLSPEQQAHSTKTMLATRILDAAEAGERSPARLLMLALMSASGPTN
Ga0126371_119249582	3300021560	Tropical Forest Soil	MASLGTFMAAEDRHFSSETVRDMQVALDLAWSSLTPEQQAQSSKTLLAARILDAAEAGERGPARLLMLALMSARRLSFCYNRVG
Ga0126371_135042311	3300021560	Tropical Forest Soil	TVRDMQVALDLAWSSLTPEQQAQSSKTVLATRILDAAEAGERGPARLLMLALMSARPLSFCYNKIG
Ga0207710_102038501	3300025900	Switchgrass Rhizosphere	SSLGTFMTEAGHFSPETVRSMPVALDLAWSSFSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP
Ga0207649_108066902	3300025920	Corn Rhizosphere	TFMTEAGHFSPETVRSMPVALDLAWSSFSPEQQSQSSRMEVATRILNAAEAGERSPARFLMLALLSASGP
Ga0207700_100578512	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MATECRHFSSETVRNMQVALDLAWSSLSPEQQVQSSKTLLATRILDAAEAGERSPARLLMLGADACY
Ga0207670_110417291	3300025936	Switchgrass Rhizosphere	VALDLAWSSFSPEQQSQPSRMEVATRILNAAEAGERSPARFLMLALLSASGP
Ga0209814_100000446	3300027873	Populus Rhizosphere	MAAEVRHFSPETVKDMQVAIDLAWSSLSAEQQAQSSKGTLATRILDAAEAGERSPARLLMLALMSASGP
Ga0209465_101151022	3300027874	Tropical Forest Soil	MTEAAHFSPETVRNMQVVLDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP
Ga0307307_102008982	3300028718	Soil	FWQGYKLHGSLGTFMAAEGRHFNSETVRDMQVALDLAWSSLSAEQQTQSNKTLVATRILDAAEAGERSPARLLMLALMSASSP
Ga0307299_100739981	3300028793	Soil	MAAEGRHFSSETVRDMQVALDLAWSSLSAEQQTQSNKTLVATRILDAAEAGERSPARLLMLALMSASSP
Ga0307287_102195492	3300028796	Soil	VGVRENRQLSLETVRDMQVAVDVAWNSLTPEQQGLSSKTVLATRILDAAAAGERGPARLVRLALMSASGV
Ga0307284_101231222	3300028799	Soil	TVRDMQVALDLAWSSLSAEQQAQSNKTLVATRILDAAEAGERSPARLLMLALMSASSP
Ga0307312_100212118	3300028828	Soil	MAAEGRHFSSETVRDMQVALDLAWSSLSAEQQAQSNKTLVATRILDAAEAGERSPARLLMLALMSASSP
Ga0075386_120558282	3300030916	Soil	SSGTVRNMQVALDVAWSSLSPDQQTQSRKTLLATRILDAAEAGERSPARLLMLALSGSLH
Ga0170820_175043941	3300031446	Forest Soil	MAAEGAHFSSGTVRNMQVALDVAWSSLSPDQQTQSRKTLLATRILDAAEAGERSPARLLMLALSGSLH
Ga0306917_102914602	3300031719	Soil	MAAEARYFSPETVRDMQVALDLAWGLLSPQQQAQSSKTAVATRILDAVGAGERSPARLLTLALMSASGP
Ga0310904_114277261	3300031854	Soil	ALDLAWSSFSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041333

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences