Metagenome / Metatranscriptome Family F041665

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F041665
Family Type	Metagenome / Metatranscriptome
Number of Sequences	159
Average Sequence Length	46 residues
Representative Sequence	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRV
Number of Associated Samples	134
Number of Associated Scaffolds	159

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.69 %
% of genes near scaffold ends (potentially truncated)	50.31 %
% of genes from short scaffolds (< 2000 bps)	89.94 %
Associated GOLD sequencing projects	125
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (92.453 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.126 % of family members)
Environment Ontology (ENVO)	Unclassified (34.591 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.428 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.16% β-sheet: 0.00% Coil/Unstructured: 55.84%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 159 Family Scaffolds
PF01936	NYN	20.75
PF00781	DAGK_cat	2.52
PF08241	Methyltransf_11	1.89
PF02826	2-Hacid_dh_C	1.26
PF13520	AA_permease_2	1.26
PF03466	LysR_substrate	1.26
PF01329	Pterin_4a	0.63
PF04228	Zn_peptidase	0.63
PF00571	CBS	0.63
PF01641	SelR	0.63
PF00155	Aminotran_1_2	0.63
PF04542	Sigma70_r2	0.63
PF00892	EamA	0.63
PF00027	cNMP_binding	0.63
PF11127	DUF2892	0.63
PF07978	NIPSNAP	0.63
PF00266	Aminotran_5	0.63
PF01554	MatE	0.63
PF05974	DUF892	0.63
PF00999	Na_H_Exchanger	0.63
PF11272	DUF3072	0.63
PF00484	Pro_CA	0.63
PF01914	MarC	0.63
PF08734	GYD	0.63
PF13188	PAS_8	0.63
PF12973	Cupin_7	0.63
PF01637	ATPase_2	0.63
PF13419	HAD_2	0.63
PF15902	Sortilin-Vps10	0.63

COG ID	Name	Functional Category	% Frequency in 159 Family Scaffolds
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	20.75
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	5.03
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.63
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.63
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.63
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.63
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.63
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.63
COG1373	Predicted ATPase, AAA+ superfamily	General function prediction only [R]	0.63
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.63
COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	General function prediction only [R]	0.63
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.63
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.63
COG2321	Predicted metalloprotease	General function prediction only [R]	0.63
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.63
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.63
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.63
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.63
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.63
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	71.07 %
Unclassified	root	N/A	7.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	71.07 %
Unclassified	root	N/A	7.55 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.26 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	37.11 %
Unclassified	root	N/A	7.55 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.52 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	37.11 %
Unclassified	root	N/A	7.55 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.26 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	1.26 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	37.11 %
Unclassified	root	N/A	7.55 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.26 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.26 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	37.11 %
Unclassified	root	N/A	7.55 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.26 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.26 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	37.11 %
Unclassified	root	N/A	7.55 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.26 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.26 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.63 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig01055	All Organisms → cellular organisms → Bacteria	3217	Open in IMG/M
2170459003\|FZ032L002FN5FR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
2170459003\|FZN2CUW02GGZBP	Not Available	506	Open in IMG/M
2170459003\|FZN2CUW02GONKG	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
2170459007\|GJ8XV2H01A5P3L	Not Available	526	Open in IMG/M
2170459008\|GA8OVOZ01BXG4C	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
2170459009\|GA8DASG01BVHUR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
2170459009\|GA8DASG01D03U6	Not Available	531	Open in IMG/M
2170459010\|GIO7OMY01B2B9B	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
2170459014\|G1P06HT02HIS2C	Not Available	629	Open in IMG/M
2170459018\|G1P06HT01AVULE	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	688	Open in IMG/M
2189573004\|GZGWRS401C3IN4	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300000550\|F24TB_10076874	Not Available	539	Open in IMG/M
3300000881\|JGI10215J12807_1222983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1002	Open in IMG/M
3300000890\|JGI11643J12802_11019658	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	632	Open in IMG/M
3300000955\|JGI1027J12803_103030829	Not Available	624	Open in IMG/M
3300000956\|JGI10216J12902_123103916	Not Available	516	Open in IMG/M
3300001145\|JGI12682J13319_1000805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3569	Open in IMG/M
3300002557\|JGI25381J37097_1039682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	790	Open in IMG/M
3300004114\|Ga0062593_100185272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1635	Open in IMG/M
3300004157\|Ga0062590_102289057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	568	Open in IMG/M
3300004479\|Ga0062595_101595009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	608	Open in IMG/M
3300004480\|Ga0062592_102022859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300005186\|Ga0066676_10738619	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300005290\|Ga0065712_10045037	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005293\|Ga0065715_10747598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	632	Open in IMG/M
3300005330\|Ga0070690_100726207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	765	Open in IMG/M
3300005332\|Ga0066388_102425621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	952	Open in IMG/M
3300005435\|Ga0070714_100743894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	948	Open in IMG/M
3300005436\|Ga0070713_100323032	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1426	Open in IMG/M
3300005447\|Ga0066689_10893166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	549	Open in IMG/M
3300005454\|Ga0066687_10043613	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300005455\|Ga0070663_102009948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300005518\|Ga0070699_101866572	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550	Open in IMG/M
3300005529\|Ga0070741_11124347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	666	Open in IMG/M
3300005553\|Ga0066695_10038818	All Organisms → cellular organisms → Bacteria	2792	Open in IMG/M
3300005560\|Ga0066670_10565648	Not Available	694	Open in IMG/M
3300005569\|Ga0066705_10024237	All Organisms → cellular organisms → Bacteria	3180	Open in IMG/M
3300005574\|Ga0066694_10156305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1082	Open in IMG/M
3300005574\|Ga0066694_10248263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	843	Open in IMG/M
3300005764\|Ga0066903_100257950	All Organisms → cellular organisms → Bacteria	2701	Open in IMG/M
3300005764\|Ga0066903_108898589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300005995\|Ga0066790_10370090	Not Available	612	Open in IMG/M
3300006032\|Ga0066696_10675610	Not Available	665	Open in IMG/M
3300006796\|Ga0066665_10228700	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300006796\|Ga0066665_11582779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300006800\|Ga0066660_10738484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	804	Open in IMG/M
3300007255\|Ga0099791_10315389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746	Open in IMG/M
3300007255\|Ga0099791_10342394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	716	Open in IMG/M
3300009093\|Ga0105240_10584113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1232	Open in IMG/M
3300009094\|Ga0111539_11892603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	692	Open in IMG/M
3300009098\|Ga0105245_11130812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
3300009101\|Ga0105247_11400520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300009137\|Ga0066709_101481847	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300009137\|Ga0066709_102248867	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300010159\|Ga0099796_10564324	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300010301\|Ga0134070_10400034	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	541	Open in IMG/M
3300010303\|Ga0134082_10353133	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300010320\|Ga0134109_10255447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300010321\|Ga0134067_10176914	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300010325\|Ga0134064_10256439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300010336\|Ga0134071_10508789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	622	Open in IMG/M
3300010336\|Ga0134071_10701426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300010337\|Ga0134062_10555660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300010364\|Ga0134066_10126813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	774	Open in IMG/M
3300010376\|Ga0126381_101368204	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300011003\|Ga0138514_100073600	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300012198\|Ga0137364_10117188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1894	Open in IMG/M
3300012198\|Ga0137364_11349687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300012199\|Ga0137383_10526640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	865	Open in IMG/M
3300012201\|Ga0137365_10302383	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300012201\|Ga0137365_10339210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1111	Open in IMG/M
3300012205\|Ga0137362_10161511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1920	Open in IMG/M
3300012205\|Ga0137362_10425139	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1150	Open in IMG/M
3300012205\|Ga0137362_10844774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	783	Open in IMG/M
3300012205\|Ga0137362_11136351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	663	Open in IMG/M
3300012207\|Ga0137381_10863133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	783	Open in IMG/M
3300012208\|Ga0137376_10145154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2039	Open in IMG/M
3300012210\|Ga0137378_11429410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300012285\|Ga0137370_10290888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	974	Open in IMG/M
3300012285\|Ga0137370_10690015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300012349\|Ga0137387_10033476	All Organisms → cellular organisms → Bacteria	3335	Open in IMG/M
3300012350\|Ga0137372_10374570	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300012354\|Ga0137366_10332370	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1114	Open in IMG/M
3300012357\|Ga0137384_10175013	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1796	Open in IMG/M
3300012358\|Ga0137368_10314345	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300012358\|Ga0137368_10737165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	616	Open in IMG/M
3300012362\|Ga0137361_10454094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1177	Open in IMG/M
3300012685\|Ga0137397_10358360	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300012897\|Ga0157285_10051446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1006	Open in IMG/M
3300012900\|Ga0157292_10366677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	536	Open in IMG/M
3300012902\|Ga0157291_10295451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	559	Open in IMG/M
3300012918\|Ga0137396_10321371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1145	Open in IMG/M
3300012922\|Ga0137394_10701295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	852	Open in IMG/M
3300012923\|Ga0137359_11460558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300012925\|Ga0137419_11730377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	534	Open in IMG/M
3300012929\|Ga0137404_10732048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	896	Open in IMG/M
3300012955\|Ga0164298_11405512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540	Open in IMG/M
3300013297\|Ga0157378_10742362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1004	Open in IMG/M
3300013307\|Ga0157372_10571683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1317	Open in IMG/M
3300013308\|Ga0157375_13638021	Not Available	513	Open in IMG/M
3300015264\|Ga0137403_10034244	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	5347	Open in IMG/M
3300015357\|Ga0134072_10051470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1147	Open in IMG/M
3300015359\|Ga0134085_10285737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	723	Open in IMG/M
3300015359\|Ga0134085_10484463	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300018028\|Ga0184608_10101587	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1201	Open in IMG/M
3300018054\|Ga0184621_10186275	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300018061\|Ga0184619_10140847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1098	Open in IMG/M
3300018061\|Ga0184619_10144483	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300018081\|Ga0184625_10175010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1123	Open in IMG/M
3300018431\|Ga0066655_11055190	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300018433\|Ga0066667_11284543	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639	Open in IMG/M
3300019356\|Ga0173481_10107410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1084	Open in IMG/M
3300019356\|Ga0173481_10667171	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300019877\|Ga0193722_1076807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
3300019877\|Ga0193722_1110131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	648	Open in IMG/M
3300019878\|Ga0193715_1042569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	980	Open in IMG/M
3300019879\|Ga0193723_1037189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1454	Open in IMG/M
3300019882\|Ga0193713_1147180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300019883\|Ga0193725_1093626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	718	Open in IMG/M
3300019886\|Ga0193727_1048446	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300019886\|Ga0193727_1188494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300019887\|Ga0193729_1196448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300019889\|Ga0193743_1154089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	786	Open in IMG/M
3300019890\|Ga0193728_1099418	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1346	Open in IMG/M
3300020015\|Ga0193734_1007669	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300021080\|Ga0210382_10250606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300021411\|Ga0193709_1075660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300021413\|Ga0193750_1025963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1364	Open in IMG/M
3300022534\|Ga0224452_1101053	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300022534\|Ga0224452_1216935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	587	Open in IMG/M
3300022756\|Ga0222622_10153169	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300023072\|Ga0247799_1025439	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300025922\|Ga0207646_10087103	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2795	Open in IMG/M
3300025928\|Ga0207700_11028089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	737	Open in IMG/M
3300025928\|Ga0207700_11116923	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	705	Open in IMG/M
3300026294\|Ga0209839_10246578	Not Available	561	Open in IMG/M
3300026314\|Ga0209268_1155571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300026323\|Ga0209472_1108567	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300026327\|Ga0209266_1018593	All Organisms → cellular organisms → Bacteria	3886	Open in IMG/M
3300026329\|Ga0209375_1007989	All Organisms → cellular organisms → Bacteria	6773	Open in IMG/M
3300026330\|Ga0209473_1048653	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300026334\|Ga0209377_1318872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
3300026335\|Ga0209804_1152583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1030	Open in IMG/M
3300026342\|Ga0209057_1226869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300026538\|Ga0209056_10518271	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300027655\|Ga0209388_1179039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300027667\|Ga0209009_1001176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7850	Open in IMG/M
3300027727\|Ga0209328_10131571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	763	Open in IMG/M
3300027748\|Ga0209689_1050614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2332	Open in IMG/M
3300028814\|Ga0307302_10174016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300030844\|Ga0075377_11704962	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300031231\|Ga0170824_100843743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300031231\|Ga0170824_128849999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1590	Open in IMG/M
3300031446\|Ga0170820_17287793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	732	Open in IMG/M
3300031474\|Ga0170818_108957654	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	674	Open in IMG/M
3300031474\|Ga0170818_114296152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	901	Open in IMG/M
3300031716\|Ga0310813_10117523	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2094	Open in IMG/M
3300031720\|Ga0307469_12207498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	536	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	6.29%
Engineered	Engineered	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.16%
Plants	Host-Associated → Plants	6.29%
Aquatic	Environmental → Aquatic	5.66%
Solid Waste	Engineered → Solid Waste	1.26%
Modeled	Engineered → Modeled	0.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.53%
Sediment	Environmental → Aquatic → Sediment	5.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.26%
Grass	Engineered → Solid Waste → Grass	1.26%
Freshwater	Environmental → Aquatic → Freshwater	0.63%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.63%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.47%
Loam	Environmental → Terrestrial → Soil → Loam	8.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.26%
Composting	Engineered → Solid Waste → Grass → Composting	1.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.63%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.14%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.26%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.63%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.55%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	5.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.26%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.26%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.63%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.63%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.63%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.63%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001145	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0055.00000290	2166559005	Simulated	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTVRRV
E4A_11450540	2170459003	Grass Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTVRRV
E4A_12279220	2170459003	Grass Soil	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAS
E4A_05645330	2170459003	Grass Soil	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSTVRRV
L02_01356150	2170459007	Grass Soil	MNYNLTTILAAIAILFVLRTYTHRRAAGAGAVILLGLAIIFGR
F48_07086070	2170459008	Grass Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILLGL
F47_12476380	2170459009	Grass Soil	LFVLLTYITGAPLVPVAVILLGLAIIFGGNTVRRV
F47_10391400	2170459009	Grass Soil	MNYNLATILAAIAILFVLLTYITRAPLVPVAVILLGLAIIFGGNTFRRV
F62_03091700	2170459010	Grass Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILLGLA
2PV_03717360	2170459014	Switchgrass, Maize And Mischanthus Litter	MNFDITTILALIAIIFVLISYIATAPLLPVAVILLGLAISF
2MG_01703600	2170459018	Switchgrass, Maize And Mischanthus Litter	MNYNIATILAVIFVLITYITSAPLVPVAVILLGLRLFSGDXEAEV
FG2_04905200	2189573004	Grass Soil	MNYNIATILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGLRRI
F24TB_100768741	3300000550	Soil	LAVIAILFVLLTYLTGAPLVPVAVILLGLAIIFGGSTFRRV*
JGI10215J12807_12229833	3300000881	Soil	AVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
JGI11643J12802_110196582	3300000890	Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFG
JGI1027J12803_1030308291	3300000955	Soil	MNYNLTTILAVIAILFVLLTYITSAPLVPVAVILLGLAIIFGGSGFRRI*
JGI10216J12902_1231039162	3300000956	Soil	MQYNIATILAVIAILFVLATYLTGAPLVPVAVILL
JGI12682J13319_10008055	3300001145	Forest Soil	MNYNIGTILAVIAIIFVLITYITSAPLVPVAVILLGPAIIFGGRGSGSLRSS*
JGI25381J37097_10396822	3300002557	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0062593_1001852723	3300004114	Soil	MNFSLSAILAILAILFVLVTYLTTAPLVPIAVILLGLAVLFGGRGRDLRP*
Ga0062590_1022890572	3300004157	Soil	TILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0062595_1015950091	3300004479	Soil	NYNLATILAVIAILFVLLTYLTGAPLVPVAVILLALAIIFGGSGFRRV*
Ga0062592_1020228592	3300004480	Soil	MNYNLATILAVIAILFVLLTYLTGAPLVPVAVILLALAIIFGGSGFRRV*
Ga0066676_107386192	3300005186	Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGTGFRRV*
Ga0065712_100450372	3300005290	Miscanthus Rhizosphere	MNFNLATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFHRV*
Ga0065715_107475981	3300005293	Miscanthus Rhizosphere	MNFNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNVFRQV*
Ga0070690_1007262072	3300005330	Switchgrass Rhizosphere	RQTHDRKTMNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0066388_1024256212	3300005332	Tropical Forest Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFSGNTFRRV*
Ga0070714_1007438942	3300005435	Agricultural Soil	MNYNLATILAGIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0070713_1003230321	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0066689_108931661	3300005447	Soil	VIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0066687_100436131	3300005454	Soil	NLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0070663_1020099481	3300005455	Corn Rhizosphere	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0070699_1018665721	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNFNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGG
Ga0070741_111243472	3300005529	Surface Soil	MNYSLGTILAVIAIVLVLATYLTGAPLVPVAVILLGLAIIFGGNPVRRV*
Ga0066695_100388184	3300005553	Soil	MNYNIGTILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0066670_105656482	3300005560	Soil	MNFNIATILAGLAILFVLITYITTAPLVPVAVILLGLAIILGGRGTNLRP*
Ga0066705_100242374	3300005569	Soil	MNYNIATILAVIAILFVLATYLTGAPLVPVAVILLGLAIIFGGQAFRRV*
Ga0066694_101563051	3300005574	Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIF
Ga0066694_102482632	3300005574	Soil	MKYNITTTLAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNGFRRV*
Ga0066903_1002579501	3300005764	Tropical Forest Soil	MNFNITNILAVIAIVFVLITYITGAPLVPIAVILLGLAILFAGRGRELRP*
Ga0066903_1088985892	3300005764	Tropical Forest Soil	MNYNIATILAVIAILFVLLTYITGAPLVPVGVILLGLAIIFGGSTFRRV*
Ga0066790_103700902	3300005995	Soil	MNYNISTILAVIAILFVLLTYMTSAPLVPVAVILLGLAIIFGGRGSGSMRNN*
Ga0066696_106756101	3300006032	Soil	MNFNIATILAGLAILFVLITYVTTAPLVPVAVILLGLAIILGGRGTNLRP*
Ga0066665_102287002	3300006796	Soil	MNYNIATILAAIVILFVLLTYLTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0066665_115827791	3300006796	Soil	MNLNIATILAVIAILFVLLTYITGAPLVPVAVILLGL
Ga0066660_107384841	3300006800	Soil	TMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGASGFRRV*
Ga0099791_103153891	3300007255	Vadose Zone Soil	MNYNLSTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0099791_103423942	3300007255	Vadose Zone Soil	MNYNLATILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0105240_105841133	3300009093	Corn Rhizosphere	MNFSLSAILAVLAILFVLVTYITTAPLVPVAVILLGLALLFGGRGRDLRP*
Ga0111539_118926032	3300009094	Populus Rhizosphere	MNYSLGTILAVIAIILVLATYLTGAPLVPVAVILLGLAIIFGGNPIRRV*
Ga0105245_111308122	3300009098	Miscanthus Rhizosphere	AIILVLATYLTGAPLVPVAVILLALAIIFGGNAVRPV*
Ga0105247_114005201	3300009101	Switchgrass Rhizosphere	THDRKTMNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0066709_1014818471	3300009137	Grasslands Soil	MNFDITTILALIAIIFVLISYVATAPLLPVAVILLGLA
Ga0066709_1022488672	3300009137	Grasslands Soil	YNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0099796_105643242	3300010159	Vadose Zone Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0134070_104000342	3300010301	Grasslands Soil	HDRKTMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0134082_103531332	3300010303	Grasslands Soil	FVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0134109_102554471	3300010320	Grasslands Soil	QETMNYNIGTILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0134067_101769142	3300010321	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGHAFRRV*
Ga0134064_102564392	3300010325	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLA
Ga0134071_105087891	3300010336	Grasslands Soil	LATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0134071_107014261	3300010336	Grasslands Soil	MNYNIGTILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNPIRRV*
Ga0134062_105556602	3300010337	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLRLAIIFGGSTFRRV*
Ga0134066_101268131	3300010364	Grasslands Soil	VIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0126381_1013682042	3300010376	Tropical Forest Soil	MSGNPPKLMNFNITNILAVIAIVFVLITYITGAPLVPIAVILLGLAILFAGRGRELRP*
Ga0138514_1000736002	3300011003	Soil	MNYNLATILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137364_101171883	3300012198	Vadose Zone Soil	MIYHFGTILAVSAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAIRRV*
Ga0137364_113496872	3300012198	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLG
Ga0137383_105266402	3300012199	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137365_103023832	3300012201	Vadose Zone Soil	MNYNIATILAVIAILFVLLTYLTGAPLVPVAVILLGLAIIFGGSTFRRV*
Ga0137365_103392103	3300012201	Vadose Zone Soil	AVIAILFVLLTYVTGAPLVPVAVILLALAIIFGGNAFRRV*
Ga0137362_101615112	3300012205	Vadose Zone Soil	MNYNLATILAVIAVLFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0137362_104251392	3300012205	Vadose Zone Soil	VIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGHAFRRV*
Ga0137362_108447742	3300012205	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITRAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0137362_111363512	3300012205	Vadose Zone Soil	ILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGQAFRRV*
Ga0137381_108631332	3300012207	Vadose Zone Soil	MNYNIATILAVIAILFVLATYLTGAPLVPVAVILL
Ga0137376_101451545	3300012208	Vadose Zone Soil	LAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRQV*
Ga0137378_114294102	3300012210	Vadose Zone Soil	FVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137370_102908884	3300012285	Vadose Zone Soil	FVLLTYITGAPLVPVAVILLGLAIIFGGNTFRQV*
Ga0137370_106900153	3300012285	Vadose Zone Soil	IAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137387_100334761	3300012349	Vadose Zone Soil	ILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137372_103745701	3300012350	Vadose Zone Soil	AIIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137366_103323703	3300012354	Vadose Zone Soil	LFVLLTYVTGAPLVPVAVILLALAIIFGGNAFRRV*
Ga0137384_101750134	3300012357	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRG*
Ga0137368_103143451	3300012358	Vadose Zone Soil	MNFNIATILAIIAILFVLLTYATGAPLVPVAVILLGLAIIFGGNPFRRV*
Ga0137368_107371651	3300012358	Vadose Zone Soil	MNYNIATILAIIAILFVLLTYVTGAPLVPVAVILLGL
Ga0137361_104540942	3300012362	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGG
Ga0137397_103583602	3300012685	Vadose Zone Soil	MTYNIATILAVIAILFVLLTYMTGAPLVPVAVILLGLAIIFGGRGPAVRP*
Ga0157285_100514462	3300012897	Soil	MNYNLATILAVIAILFVLLTYITGAPLLPVAVILLALAIIFGGSGFRRV*
Ga0157292_103666771	3300012900	Soil	ILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0157291_102954511	3300012902	Soil	RQNHDRKTMNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0137396_103213712	3300012918	Vadose Zone Soil	FVLLTYITGAPLVPVAVILLGLAIIFGGHAFRRV*
Ga0137394_107012951	3300012922	Vadose Zone Soil	AILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137359_114605582	3300012923	Vadose Zone Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGQAFRPV*
Ga0137419_117303772	3300012925	Vadose Zone Soil	MNYSIATILAAIAIILVLATYLTGAPLVPVAVILLGLAIIFGGNAFRRV*
Ga0137404_107320481	3300012929	Vadose Zone Soil	ILAVVAIILVLATYLTGAPLVPVAVILLGLAIIFGGNAVRPV*
Ga0164298_114055121	3300012955	Soil	NYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV*
Ga0157378_107423622	3300013297	Miscanthus Rhizosphere	MNYSLGTILAGLAILFVLITYLTTAPLVPVAVILLGLAIILGGRGGTRPV*
Ga0157372_105716833	3300013307	Corn Rhizosphere	MNFSLSAILAVLAILFVLVTYITTAPLVPVAVILLGLAILFGGRGRDLRP*
Ga0157375_136380212	3300013308	Miscanthus Rhizosphere	MNYSIGTILAGLAILFVLITYITTAPLVPVAVILLALAIILGGRGLRQV*
Ga0137403_100342443	3300015264	Vadose Zone Soil	MNYSLGTILAVIAIILVLATYLTGAPLVPVAVILLGLAIIFGGNAVRPV*
Ga0134072_100514701	3300015357	Grasslands Soil	PHPVHDRKTMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV*
Ga0134085_102857371	3300015359	Grasslands Soil	LFVLLTYVTGAPLVPVAVILLGLATIFGGNAIRRV*
Ga0134085_104844631	3300015359	Grasslands Soil	LAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFRGNTFRRV*
Ga0184608_101015871	3300018028	Groundwater Sediment	MNYNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0184621_101862751	3300018054	Groundwater Sediment	MNYSLGTILAVVAIILVLATYLTGAPLVPVAVILLALAI
Ga0184619_101408473	3300018061	Groundwater Sediment	MNYNIATILAVIAILFVLLTYVTGAPLLPVAVILLGLAIIFGGNAFRRV
Ga0184619_101444832	3300018061	Groundwater Sediment	MNYNIATILAVIAIIFVLLTYITSAPLVPVAVILLGL
Ga0184625_101750101	3300018081	Groundwater Sediment	TILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0066655_110551901	3300018431	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0066667_112845431	3300018433	Grasslands Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLRLAIIFGGSGFRRV
Ga0173481_101074101	3300019356	Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNTFRRV
Ga0173481_106671711	3300019356	Soil	MNYNLATILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0193722_10768072	3300019877	Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0193722_11101312	3300019877	Soil	MNYSLSTILAILAILFVLVTYLTTAPLVPVAVILLGLAILFGGRGRDLRP
Ga0193715_10425692	3300019878	Soil	MNYNIATILAVIAIIFVLLTYITSAPLVPVAVILL
Ga0193723_10371891	3300019879	Soil	MNYNLATILAVIAILFVLITYLTSAPLVPVAVILLGLAIIFGGRGSGTLRNS
Ga0193713_11471802	3300019882	Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILLG
Ga0193725_10936261	3300019883	Soil	MNYNLTTILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNTFRRV
Ga0193727_10484465	3300019886	Soil	MNYNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAF
Ga0193727_11884941	3300019886	Soil	ANNDRKTMNYNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0193729_11964481	3300019887	Soil	NYNISTILAVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0193743_11540891	3300019889	Soil	RRKTHDRETMNYNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRA
Ga0193728_10994181	3300019890	Soil	NPRVIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0193734_10076691	3300020015	Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILLGLAI
Ga0210382_102506062	3300021080	Groundwater Sediment	MNYNIATILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0193709_10756602	3300021411	Soil	MTYNIATILAVIAILFVLLTYMTGAPLVPVAVILLGLAIIFGGRGPAVRP
Ga0193750_10259633	3300021413	Soil	IAILFVLLTYVTGAPLVPVAVILLALAIIFGGNAFRRV
Ga0224452_11010531	3300022534	Groundwater Sediment	LAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0224452_12169352	3300022534	Groundwater Sediment	TMNYNLATILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0222622_101531693	3300022756	Groundwater Sediment	ILVLATYLTGAPLVPVAVILLALAIIFGGNAVRPV
Ga0247799_10254393	3300023072	Soil	MNYSLGTILAVIAIILVLATYLTGAPLVPVAVILLALAI
Ga0207646_100871036	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	THDRKTMNFNIATILAAIAILFVLLTYVTGAPLVPVAVILLGLAIIFGGNVFRQV
Ga0207700_110280891	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0207700_111169231	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	WVHDRKTMNYNLATILAGIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0209839_102465782	3300026294	Soil	MNYNISTILAVIAILFVLLTYMTSAPLVPVAVILLGLAIIFGGRGSGSMRNN
Ga0209268_11555712	3300026314	Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILL
Ga0209472_11085672	3300026323	Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGTGFRRV
Ga0209266_10185931	3300026327	Soil	RLHDRKTMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0209375_10079891	3300026329	Soil	MNYNIATILAVIAILFVLLTYVTGAPLVPVAVILLALA
Ga0209473_10486531	3300026330	Soil	MNYNIATILAVIAILFVLATYLTGAPLVPVAVILLGLAIIFGGQAFRRV
Ga0209377_13188721	3300026334	Soil	HDRKTMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0209804_11525831	3300026335	Soil	DRKTMNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0209057_12268692	3300026342	Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGF
Ga0209056_105182711	3300026538	Soil	MNYNIATILAAIVILFVLLTYLTGAPLVPVAVILLGLAIIFGGNAFRRV
Ga0209388_11790391	3300027655	Vadose Zone Soil	MNYNLSTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0209009_100117611	3300027667	Forest Soil	MNYNIGTILAVIAIIFVLITYITSAPLVPVAVILLGPAIIFGGRGSGSLRSS
Ga0209328_101315711	3300027727	Forest Soil	MNYNIATILAVIAIIFVLITYLTSAPLVPVAVILLG
Ga0209689_10506141	3300027748	Soil	MNYNLATILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFG
Ga0307302_101740161	3300028814	Soil	MNYNIATILAAIAILFVLLTYITGAPLVPVAVILLG
Ga0075377_117049622	3300030844	Soil	MNYNIATILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGSGFHRI
Ga0170824_1008437432	3300031231	Forest Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNT
Ga0170824_1288499991	3300031231	Forest Soil	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGLAIIFGGNT
Ga0170820_172877932	3300031446	Forest Soil	MNYNLTTILAAIAILFVLLTYITGAPLVPVAVILLGPAIIFGGNTFRRV
Ga0170818_1089576541	3300031474	Forest Soil	MNYNLATILAVIAILFVLLTYITSAPLVPVAVILLGLAIIFGGSGFRRI
Ga0170818_1142961522	3300031474	Forest Soil	MNYNLTTILAVIAILFVLLTYITGAPLVPVAVILLGPAIIFGGNTFRRV
Ga0310813_101175231	3300031716	Soil	MNYNIATILAVIAILFVLLSYITGAPLVPVAVILLGLAIIFGGSGFRRV
Ga0307469_122074982	3300031720	Hardwood Forest Soil	MGKTHDSKTMNYNIATILAVIAILFVLLTYITGAPLVPVAVILLGLASIFGGNSFRRV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences