Metagenome / Metatranscriptome Family F042464

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F042464
Family Type	Metagenome / Metatranscriptome
Number of Sequences	158
Average Sequence Length	48 residues
Representative Sequence	AGKKKDAQQQALRAKALLPKNSAGYNRAENIHREAEHMEDSAGGVANSR
Number of Associated Samples	124
Number of Associated Scaffolds	158

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.27 %
% of genes near scaffold ends (potentially truncated)	97.47 %
% of genes from short scaffolds (< 2000 bps)	91.77 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.734 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.570 % of family members)
Environment Ontology (ENVO)	Unclassified (43.038 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.26% β-sheet: 0.00% Coil/Unstructured: 59.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 158 Family Scaffolds
PF13462	Thioredoxin_4	55.06
PF01323	DSBA	22.15
PF13417	GST_N_3	4.43
PF14497	GST_C_3	1.90
PF13410	GST_C_2	1.27
PF02798	GST_N	1.27
PF01966	HD	0.63
PF05199	GMC_oxred_C	0.63
PF00440	TetR_N	0.63

COG ID	Name	Functional Category	% Frequency in 158 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.73 %
Unclassified	root	N/A	1.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.73 %
Unclassified	root	N/A	1.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.73 %
Unclassified	root	N/A	1.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.27 %
Unclassified	root	N/A	1.27 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.27 %
Unclassified	root	N/A	1.27 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	25.95 %
Unclassified	root	N/A	1.27 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.63 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	16.46 %
Unclassified	root	N/A	1.27 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.63 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	15.82 %
Unclassified	root	N/A	1.27 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.63 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.63 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	15.82 %
Unclassified	root	N/A	1.27 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.63 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.63 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	15.82 %
Unclassified	root	N/A	1.27 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.63 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001643\|JGI20278J16324_100689	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300004082\|Ga0062384_101044182	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300004092\|Ga0062389_100647482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1225	Open in IMG/M
3300004631\|Ga0058899_12175858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	533	Open in IMG/M
3300005332\|Ga0066388_103582911	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005437\|Ga0070710_11503117	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005536\|Ga0070697_102011043	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005554\|Ga0066661_10492469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	742	Open in IMG/M
3300005764\|Ga0066903_102266617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300005764\|Ga0066903_102576431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	985	Open in IMG/M
3300006175\|Ga0070712_100842451	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300006755\|Ga0079222_11162309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	686	Open in IMG/M
3300006800\|Ga0066660_11437187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	541	Open in IMG/M
3300009143\|Ga0099792_10502767	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300010048\|Ga0126373_12124290	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300010048\|Ga0126373_13308866	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010154\|Ga0127503_11082050	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300010321\|Ga0134067_10404091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300010339\|Ga0074046_10407232	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010339\|Ga0074046_10761129	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300010343\|Ga0074044_10420348	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300010343\|Ga0074044_10921074	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300010361\|Ga0126378_12552253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300010361\|Ga0126378_13269871	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300010366\|Ga0126379_11758770	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300010366\|Ga0126379_12508646	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300010376\|Ga0126381_100308767	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300010376\|Ga0126381_101699449	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300010398\|Ga0126383_11237616	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300010398\|Ga0126383_13569056	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300011120\|Ga0150983_10069542	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012201\|Ga0137365_11222959	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300012205\|Ga0137362_10541836	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300012205\|Ga0137362_11105545	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012361\|Ga0137360_10061761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2741	Open in IMG/M
3300012917\|Ga0137395_10213052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1348	Open in IMG/M
3300012918\|Ga0137396_10729531	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300015371\|Ga0132258_12116991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1414	Open in IMG/M
3300016270\|Ga0182036_11438316	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300016294\|Ga0182041_11160258	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300016319\|Ga0182033_10024864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3724	Open in IMG/M
3300016319\|Ga0182033_10750069	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300016371\|Ga0182034_10797943	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300016404\|Ga0182037_10195015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1566	Open in IMG/M
3300016445\|Ga0182038_10312334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1289	Open in IMG/M
3300016445\|Ga0182038_10444048	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300018482\|Ga0066669_12350563	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300020580\|Ga0210403_10839709	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300020582\|Ga0210395_10179539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1586	Open in IMG/M
3300021168\|Ga0210406_10193661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1688	Open in IMG/M
3300021170\|Ga0210400_10509122	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300021178\|Ga0210408_10450885	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300021178\|Ga0210408_10659064	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300021403\|Ga0210397_10626218	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300021405\|Ga0210387_10322466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1361	Open in IMG/M
3300021432\|Ga0210384_11388959	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300021439\|Ga0213879_10165307	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300021441\|Ga0213871_10058261	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300021475\|Ga0210392_10070320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2221	Open in IMG/M
3300021476\|Ga0187846_10206256	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300021559\|Ga0210409_10202829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1806	Open in IMG/M
3300021560\|Ga0126371_11557926	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300021560\|Ga0126371_11729797	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300021560\|Ga0126371_12272199	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300022510\|Ga0242652_1019674	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300022510\|Ga0242652_1028901	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300022511\|Ga0242651_1001348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1666	Open in IMG/M
3300022529\|Ga0242668_1087969	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300022530\|Ga0242658_1066290	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300022532\|Ga0242655_10014197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1595	Open in IMG/M
3300022716\|Ga0242673_1104779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300022724\|Ga0242665_10367042	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300022726\|Ga0242654_10053547	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300022726\|Ga0242654_10197067	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300023046\|Ga0233356_1051236	Not Available	516	Open in IMG/M
3300025898\|Ga0207692_10064256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1910	Open in IMG/M
3300025928\|Ga0207700_10720719	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300025928\|Ga0207700_11460469	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300025929\|Ga0207664_10183735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1796	Open in IMG/M
3300025939\|Ga0207665_10061296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2549	Open in IMG/M
3300026552\|Ga0209577_10764721	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300026557\|Ga0179587_10517778	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300027371\|Ga0209418_1093773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	539	Open in IMG/M
3300027701\|Ga0209447_10054006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1107	Open in IMG/M
3300027727\|Ga0209328_10132061	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300027737\|Ga0209038_10088198	All Organisms → cellular organisms → Bacteria → Proteobacteria	933	Open in IMG/M
3300027862\|Ga0209701_10348779	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300027889\|Ga0209380_10026303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3282	Open in IMG/M
3300029701\|Ga0222748_1013291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1106	Open in IMG/M
3300031057\|Ga0170834_104296600	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300031122\|Ga0170822_11046283	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031122\|Ga0170822_13675909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300031231\|Ga0170824_105774645	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031446\|Ga0170820_15548950	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300031543\|Ga0318516_10287744	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300031546\|Ga0318538_10690032	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300031561\|Ga0318528_10038969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2368	Open in IMG/M
3300031561\|Ga0318528_10418257	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300031564\|Ga0318573_10364650	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031564\|Ga0318573_10762190	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031572\|Ga0318515_10421374	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031572\|Ga0318515_10705055	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031668\|Ga0318542_10127380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1250	Open in IMG/M
3300031679\|Ga0318561_10532907	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300031718\|Ga0307474_10048557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3130	Open in IMG/M
3300031719\|Ga0306917_10683304	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300031744\|Ga0306918_10096452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2095	Open in IMG/M
3300031744\|Ga0306918_10576213	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300031747\|Ga0318502_10357470	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031751\|Ga0318494_10412848	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031765\|Ga0318554_10093895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1682	Open in IMG/M
3300031768\|Ga0318509_10087794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1659	Open in IMG/M
3300031768\|Ga0318509_10386062	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300031779\|Ga0318566_10051664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1954	Open in IMG/M
3300031780\|Ga0318508_1035025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1287	Open in IMG/M
3300031780\|Ga0318508_1243000	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031780\|Ga0318508_1250102	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031781\|Ga0318547_10571156	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031795\|Ga0318557_10323317	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300031796\|Ga0318576_10100761	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300031796\|Ga0318576_10391811	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031796\|Ga0318576_10618207	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031799\|Ga0318565_10101993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1377	Open in IMG/M
3300031805\|Ga0318497_10395947	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031819\|Ga0318568_10693641	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300031833\|Ga0310917_10882359	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300031879\|Ga0306919_10566849	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300031880\|Ga0318544_10313043	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031890\|Ga0306925_10157720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2443	Open in IMG/M
3300031890\|Ga0306925_10340599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1611	Open in IMG/M
3300031893\|Ga0318536_10252192	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031896\|Ga0318551_10260152	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031897\|Ga0318520_10079525	All Organisms → cellular organisms → Bacteria → Proteobacteria	1798	Open in IMG/M
3300031897\|Ga0318520_10783111	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300031941\|Ga0310912_10415131	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300031942\|Ga0310916_10035069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3723	Open in IMG/M
3300031945\|Ga0310913_10068835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2342	Open in IMG/M
3300031946\|Ga0310910_10768628	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031954\|Ga0306926_10845031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300031962\|Ga0307479_11831397	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300032009\|Ga0318563_10285497	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300032010\|Ga0318569_10097554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1325	Open in IMG/M
3300032025\|Ga0318507_10275203	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300032035\|Ga0310911_10193989	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300032041\|Ga0318549_10527456	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300032052\|Ga0318506_10061962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1535	Open in IMG/M
3300032052\|Ga0318506_10430253	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300032060\|Ga0318505_10343481	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300032076\|Ga0306924_10206706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2254	Open in IMG/M
3300032076\|Ga0306924_11939868	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300032090\|Ga0318518_10167305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1120	Open in IMG/M
3300032090\|Ga0318518_10500211	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032180\|Ga0307471_101731723	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300032180\|Ga0307471_103845936	Not Available	531	Open in IMG/M
3300032261\|Ga0306920_103000435	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300032261\|Ga0306920_103775370	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300033289\|Ga0310914_10582895	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300033290\|Ga0318519_10995675	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.73%
Host-Associated	Host-Associated	1.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.57%
Aquatic	Environmental → Aquatic	3.16%
Plants	Host-Associated → Plants	1.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.94%
Freshwater	Environmental → Aquatic → Freshwater	3.16%
Cave	Environmental → Terrestrial → Cave	0.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.65%
Loam	Environmental → Terrestrial → Soil → Loam	10.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.53%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.63%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.06%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.53%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.63%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.23%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.16%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.53%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.63%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.63%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.63%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001643	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20278J16324_1006892	3300001643	Forest Soil	LRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR*
Ga0062384_1010441822	3300004082	Bog Forest Soil	QAVRAKALLPKNSAGYNRAENIHSEAEHMEESTGGVANSR*
Ga0062389_1006474821	3300004092	Bog Forest Soil	LAKEALAAGRKKDAQQQALRAKGLLPKSSAAYNQAENIHREAEQIEDAGNAANSR*
Ga0058899_121758581	3300004631	Forest Soil	LSLAEEGLAAGKKKDAQQQALRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR*
Ga0066388_1035829112	3300005332	Tropical Forest Soil	KKDAQQQALRAKALLPKNSAGYNRAENIHRDAEQIEESRGGVANSR*
Ga0070710_115031172	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ALRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR*
Ga0070697_1020110432	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	KDAQQQALRAKALLPKNSAGYNRAENIHGEAEHIEDSAGGVVNVH*
Ga0066661_104924691	3300005554	Soil	NQIGMAALSLAEEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHREAEHMEESTGGVANSR*
Ga0066903_1022666173	3300005764	Tropical Forest Soil	LRAKALLPKNSAAYNRAENIHLEAEHIEDSAGGLANVR*
Ga0066903_1025764311	3300005764	Tropical Forest Soil	ALAKEGLAAGKKKDALQQALRAKALLPKNSAGYLQAENIHREAEHIDDSSSGLANIH*
Ga0070712_1008424511	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GKKKDAQQQALRAKALLPKNSAGYNRAENIHGEAEHIEDSAGGVVNVH*
Ga0079222_111623091	3300006755	Agricultural Soil	SLAEEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHREAEHMEESTGGVANSR*
Ga0066660_114371871	3300006800	Soil	EGLAAGKKKDAQQQALRAKALLPKNSPGYNRAENIHHEAERIEDSAGGVANVR*
Ga0099792_105027672	3300009143	Vadose Zone Soil	AEEGLSAGKKKDATQQASRAKALLQKNSAAYNRAEEIQREAEKIETSD*
Ga0126373_121242902	3300010048	Tropical Forest Soil	GKKKDAQQQALRAKGLLPKNSAAYNRAENIHLEAEHIEDSAGGLVNVH*
Ga0126373_133088662	3300010048	Tropical Forest Soil	ALLPKNSTGYSRAENIHREAEHIEDSGGGLVNIH*
Ga0127503_110820502	3300010154	Soil	ALAEEGLAGGKKKLAQQQALRAKGLLPKNSTGYNRAENIHREAEQIEDAGNAVNAR*
Ga0134067_104040912	3300010321	Grasslands Soil	MAALSLAEEGLAAGKKKDAQQQALRAKALLPKNSAGFNRAENIHREAEHMDESAGGVANSR*
Ga0074046_104072322	3300010339	Bog Forest Soil	AEEGLSAGKKKDAQQQALRAKALLPKNSPAWNRAENIHREAEDIENSAGSGANSR*
Ga0074046_107611292	3300010339	Bog Forest Soil	ALAEEGLAAGKKRDAQQQALRAKGLLPKNSAGYNRAENIHREAEQIEDSAGGVANSR*
Ga0074044_104203481	3300010343	Bog Forest Soil	RAKALLPKNSAGYNRAENIHSEAEHMEESTGGVANSR*
Ga0074044_109210741	3300010343	Bog Forest Soil	LAEEGLAGGKKKDAQQQARRAKALLPKNSAAYNRAENIHLEAEQMDDSGGGLVNIH*
Ga0126378_125522531	3300010361	Tropical Forest Soil	QQQALRAKGLLPKNSAGWNRAENIHREAEQIEDASRAANSR*
Ga0126378_132698711	3300010361	Tropical Forest Soil	NQMGMAALALAEEGLSAGKKKVAQQQANRAKALLPKNSAAYNRAENIYRQAGERDD*
Ga0126379_117587701	3300010366	Tropical Forest Soil	QQQALRAKGLLPKNSAGYNRAENIRHEAEQIEDTGNAVNAR*
Ga0126379_125086461	3300010366	Tropical Forest Soil	AAGKKKDAMQQALRAKALLPRNSASYNRAENIHSEAEHIEDTPGGLVNIH*
Ga0126381_1003087671	3300010376	Tropical Forest Soil	QQQALRAKGLLPKNSAGYNRAENIRLEAEQMEDAAGNAANSR*
Ga0126381_1016994492	3300010376	Tropical Forest Soil	LALAEEGLAAGKKKTAQQQALRAKGLLPKNSAGYNRAENIRHEAEQIEDAGDVANSR*
Ga0126383_112376162	3300010398	Tropical Forest Soil	AKALLPKNSAAYNRAENIHLEAEHIEDSAGGLANVR*
Ga0126383_135690562	3300010398	Tropical Forest Soil	SGKKKDAQQQALRAKALLPKNSAAYNRAENIRVEAEHIEDSASGVANSR*
Ga0150983_100695421	3300011120	Forest Soil	QQALRAKALLPKNSAGYNRAENIHSEAEHMDESGGGVANSR*
Ga0137365_112229592	3300012201	Vadose Zone Soil	AGKKKDATQQASRAKALLKKNPAAYNRAEEIQREAEKIETSD*
Ga0137362_105418361	3300012205	Vadose Zone Soil	KDATQQASRAKALLPKNSAAYNRAEEIQREAEKIETSD*
Ga0137362_111055451	3300012205	Vadose Zone Soil	MGMAALALAEEGLSAGKKKVAQQQANRAKALLPKNSTAYNRAENIHREAGERDD*
Ga0137360_100617615	3300012361	Vadose Zone Soil	MAALALAEEALSAGKKKVAQQQAIRAKQLLTKNSVAYNRAENIHRQAGEIED*
Ga0137395_102130523	3300012917	Vadose Zone Soil	EEGLSAGKKKDATQQASRAKALLQKNPVAYNRAEEIQREAEKIETSD*
Ga0137396_107295311	3300012918	Vadose Zone Soil	RDNQMGMAALALAEEGLTAGKKKVAQEQANRAKALLPKNSTAYNRAENIHRQAGERDD*
Ga0132258_121169911	3300015371	Arabidopsis Rhizosphere	KDAQQQALRAKALLPKNSPGYNRAENIHHEAERIEDSAGGVTNVH*
Ga0182036_114383162	3300016270	Soil	RAKALLPKNSPGYNRAENIHREAEHMEESAGGVANSR
Ga0182041_111602582	3300016294	Soil	GGRKKEARQQALRAKALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR
Ga0182033_100248646	3300016319	Soil	LRAKALLPKTAPGYTRANNIQREAEQMDDSAGGAVNVH
Ga0182033_107500692	3300016319	Soil	RAKGLLPKNSPAYYRAVNIHREAQQIENATGNVANSR
Ga0182034_107979431	3300016371	Soil	ALAEEGLSAGKKKDATQQAIRAKALLPKNSAAYNRAESVQREAEKIENSE
Ga0182037_101950151	3300016404	Soil	ALRAKALLPKNSAGYNRAENIHLEAEHIEDSGGGLANVH
Ga0182038_103123341	3300016445	Soil	KDARQQALRAKALLPKNSTAYNRAENIHLEAERIEDAAGGGGMNSR
Ga0182038_104440481	3300016445	Soil	GLATGKKKVAQQQALRAKGLLPKNSAEYNQAANIHREAEQIEDAGNSANSR
Ga0066669_123505632	3300018482	Grasslands Soil	MRMTALALAEEGLTAGKKKVAQQQANRAKALLPKNSTAYNRAENIHRQAEERDD
Ga0210403_108397092	3300020580	Soil	IGMAALSLAEEGLAAGKKKDAQQQAIRAKALLPKNSAGYNRAENIHSEAEHMEESTGGVANAR
Ga0210395_101795393	3300020582	Soil	AQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0210406_101936611	3300021168	Soil	AEEGLVAGKKKDAQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0210400_105091221	3300021170	Soil	QMGMAALALAEEGLSAGKKKDATQQASRAKALLKKSSAAYNRAEEIQREAEKIETSD
Ga0210408_104508852	3300021178	Soil	GKKKDAQQQALRAKALLPKNSAGYNRAENIHGEAEHIEDSAGGVVNVH
Ga0210408_106590642	3300021178	Soil	ALSLAEEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHSEAEHMEESGGGVANSR
Ga0210397_106262182	3300021403	Soil	KKDAQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0210387_103224663	3300021405	Soil	KKDAQQQAVRARALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0210384_113889592	3300021432	Soil	LALAEEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHSEAEHMDESGGGVANSR
Ga0213879_101653071	3300021439	Bulk Soil	AGKKKDAQQQAQRAKQLLAKNSAGYNRAENIRHEAEQIEDSGGGLVNVH
Ga0213871_100582611	3300021441	Rhizosphere	SLAEEGLAAGKKRDAMQQANRARQLLPKNTAAYFRAEEIRHEAERIEEQ
Ga0210392_100703204	3300021475	Soil	AAGKKKDAQQQAIRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0187846_102062561	3300021476	Biofilm	DAQQQALRAKALLPKNSAAFYHAENIHLEAEHIEDSAGGVANSH
Ga0210409_102028291	3300021559	Soil	EEGLAAGKKKDAQQQALRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR
Ga0126371_115579261	3300021560	Tropical Forest Soil	LAAGKKKDAQQQAQRAKQLLPKSSAGYNRAENIRHEAEQIEESGGGLVNVH
Ga0126371_117297972	3300021560	Tropical Forest Soil	AAGKKKDALQQALRAKALLPKNSAGYLQAENIHREAEHIDDSSSGLANIH
Ga0126371_122721992	3300021560	Tropical Forest Soil	MAALALAKEGLAAGKKKDALQQALRAKALLPKNSAGYLQAENIHREAEHIDDSSSGLVNI
Ga0242652_10196741	3300022510	Soil	ALALAEEGLAAGKKKDAQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0242652_10289011	3300022510	Soil	DNQIGMAALALAEEGLAAGKKKDAQQQALRAKALLPKNSADYNRAENIHSEAEHMEESGGGVANSR
Ga0242651_10013481	3300022511	Soil	EGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHSEAEHMEESGGGVANSR
Ga0242668_10879691	3300022529	Soil	QALRAKALLPKNSAGYNRAENIHSEAEHMEESGGGVANWR
Ga0242658_10662902	3300022530	Soil	DAQQQALRAKALLSKNSTGYNRAENIHREAELIEESAGGVANVH
Ga0242655_100141973	3300022532	Soil	GRDNQIGMAALSLAEEGLAAGKKKDAQQQALRAKALLLKNSAGYSRAENIHSEAEHMEESGGGVANSR
Ga0242673_11047792	3300022716	Soil	MAALSLAEEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHSEAEHMEESGGGVANS
Ga0242665_103670422	3300022724	Soil	LAEEGLSAGKKKVAQQQAVRAKALLPKNSSAYNRAENIHREAGDIEN
Ga0242654_100535473	3300022726	Soil	MGMAALALAEEGLSAGKKKDATQQASRAKALLQKNPVAYNRAEEIQREAEKIETSD
Ga0242654_101970672	3300022726	Soil	AGKKKDAQQQALRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR
Ga0233356_10512362	3300023046	Soil	AGKKKDAQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0207692_100642561	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	EEGLAAGKKKDAQQQALRAKALLSKNSTGYNRAENIHREAEHIEESAGGVANVH
Ga0207700_107207191	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	EEGLAAGKKKDAQQQALRAKALLPKNSAGYNRAENIHGEAEHIEDSAGGVVNVH
Ga0207700_114604691	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AGKKKDAQQQALRAKALLPKNSAGYNRAENIHREAEHMEDSAGGVANSR
Ga0207664_101837353	3300025929	Agricultural Soil	ALRAKALLPKNSAGYNRAENIHREAEHMEDSASGVANSR
Ga0207665_100612964	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	IGMAALALAEEGLAAGKKKDAQQQALRAKALLSKNSTGYNRAENIHREAELIEESAGGVANVH
Ga0209577_107647211	3300026552	Soil	EGLAAGKKKDAQQQALRAKALLPKNSPGYNRAENIHHEAERIEDSAGGVANVR
Ga0179587_105177781	3300026557	Vadose Zone Soil	KKDATQQASRAKALLKKSSAAYNRAEEIQREAEKIETSD
Ga0209418_10937732	3300027371	Forest Soil	LRAKGLLPKNSAPYNRAENIHLEAEHMDDSGGGLVNIH
Ga0209447_100540061	3300027701	Bog Forest Soil	GEKKKDAQQQARRAKALLPKNSAAYNRAENIHLEAEQMDDSGGGLVNIH
Ga0209328_101320612	3300027727	Forest Soil	GREDQMGMAALALAEEGLSAGKKKDATQQASRAKALLKKSSAAYNRAEEIQREAEKIETS
Ga0209038_100881981	3300027737	Bog Forest Soil	EEGLAGGKKKDAQQQARRAKALLPKNSAAYNRAENIHLEAEQMDDSGGGLVNIH
Ga0209701_103487791	3300027862	Vadose Zone Soil	GKKKDATQQASRAKALLKKSSAAYNRAEEIQREAEKIETSD
Ga0209380_100263035	3300027889	Soil	AEEGLAAGKKKDAQQQAVRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0222748_10132911	3300029701	Soil	KDAQQQALRAKALLPKNSAGYSRAENIHSEAEHMEESGGGVANSR
Ga0170834_1042966002	3300031057	Forest Soil	AAGKKKDAQQQALRAKALLPKNSASYNRAENIHREAEHMEESAGGVANSR
Ga0170822_110462831	3300031122	Forest Soil	KKDAQQQALRAKALLPKNSASYNRAENIHREAEHMEESAGGVANSR
Ga0170822_136759091	3300031122	Forest Soil	MAALALAEEGLAGGKKKLAQQQALRAKGLLPKNSAGYNRAENIHSEAEQIEDAGNAVNAR
Ga0170824_1057746452	3300031231	Forest Soil	AQQQALRAKGLLPKNSAEYNQAANIHREAEQIEDAGNSANSR
Ga0170820_155489501	3300031446	Forest Soil	QQALRAKALLPKNSASYNRAENIHREAEHMEESAGGVANSR
Ga0318516_102877442	3300031543	Soil	ALLPKNSAAFNRAENIHLEAERIEDAAGGGGMNSR
Ga0318538_106900322	3300031546	Soil	LALAEEGLASGKKKDAQQQALRAKALLPKNSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0318528_100389691	3300031561	Soil	RKKEARQQALRAKALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR
Ga0318528_104182571	3300031561	Soil	LRAKALLPKTSPGYTRANNIQREAGQMEDSTGGVVNVH
Ga0318573_103646501	3300031564	Soil	DAQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318573_107621902	3300031564	Soil	KTAQQQALRAKGLLPKNSAGYNRAENIRHEAEQIEDAGDVANSR
Ga0318515_104213741	3300031572	Soil	AQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318515_107050551	3300031572	Soil	GLAGGRKKEARQQALRAKALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR
Ga0318542_101273803	3300031668	Soil	AKALLPKNSAGYLQAENIHREAEHIDDSSSGLANIH
Ga0318561_105329072	3300031679	Soil	AGKKKDAQQQALRAKGLLPKNSAAYNRAENIHLEAEHIEDSAGGLVNVH
Ga0307474_100485575	3300031718	Hardwood Forest Soil	LSLAEEGLAAGKKKDAQQQALRAKARLPKNSAGYSRAENIHSEAEHMEESGGGVANSR
Ga0306917_106833041	3300031719	Soil	AVRAKALLPKNSPGYHRAENIHREAEQIEDSGGGLVNVH
Ga0306918_100964524	3300031744	Soil	EEGLSAGKKKDATQQAIRAKALLPKNSAAYNRAESVQREAEKIENSE
Ga0306918_105762131	3300031744	Soil	QALRAKALLPKTSPGYTRANNIQREAGQMEDSTGGVVNVH
Ga0318502_103574702	3300031747	Soil	GNKKDAQQQALRAKALLPKTSPGYTRANNIQREAGQMEDSTGGVVNVH
Ga0318494_104128482	3300031751	Soil	LALAEEGLAGGKKKDAQQQAVRAKALLPKNSPGYHRAENIHREAEQIEDSGGGLVNVH
Ga0318554_100938951	3300031765	Soil	ALALAEEGLVAGKKKDAQQQALRAKGLLPKNSAGYNRAENIHREAEQIEDAGNAVNSRYS
Ga0318509_100877941	3300031768	Soil	QALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318509_103860622	3300031768	Soil	GMAALALAEEGLASGKKKDAQQQALRAKALLPKNSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0318566_100516641	3300031779	Soil	ALALAEEGLAAGKKKDAQQQALRAKTLLPKSSAGYNRAENIHREAEQIDDSGGGLTNVR
Ga0318508_10350251	3300031780	Soil	EGLVARKKKDAQQQALRAKGLLPKNSAGYNRAENIHREAEQIEDAGNAANSR
Ga0318508_12430001	3300031780	Soil	RAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318508_12501021	3300031780	Soil	GLAGGKKKDAQQQAVRAKALLPKNSPGYHRAENIHREAEQIEDSGGGLANVH
Ga0318547_105711561	3300031781	Soil	QALRAKALLPKSSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0318557_103233172	3300031795	Soil	VVAGGKKKDAQQQALRAKALLPKNSAGYNRAENIHLEAEHIEDSGGGLANVH
Ga0318576_101007613	3300031796	Soil	ALAEEGLAAGKKKDAQQQALRAKALLPKSSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0318576_103918111	3300031796	Soil	KALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR
Ga0318576_106182072	3300031796	Soil	QQALRAKGLLPKNSPGYNRAENIHREAEQIENAAGNVANSR
Ga0318565_101019931	3300031799	Soil	DNQIGMAALALAEEGLASGKKKDAQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318497_103959471	3300031805	Soil	QALRAKTLLPKSSAGYNRAENIHREAEQIDDSGGGLTNVR
Ga0318568_106936412	3300031819	Soil	KKDAQQQALRAKGLLPKNSAAYNRAENIHLEAEHIEDSAGGLVNVH
Ga0310917_108823592	3300031833	Soil	AQQQALRAKGLLPKNSPAYYRAVNIHREAQQIENATGNVANSR
Ga0306919_105668491	3300031879	Soil	MGMAALALAEEGLSAGKRKDATQQANRAKGLLLKNSAAYNRAEEIQREAKEIENSD
Ga0318544_103130432	3300031880	Soil	QQALRAKALLPKNSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0306925_101577204	3300031890	Soil	LAAGKKKDAQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0306925_103405991	3300031890	Soil	LRAKGLLPKNSAEYNQAANIHREAEQIEDAGNSANSR
Ga0318536_102521922	3300031893	Soil	EEGLAGGRKKDARQQALRAKALLPKNSTAYNRAENIHLEVERIEDAAGGGGMNSR
Ga0318551_102601521	3300031896	Soil	MAALALAEEGLASGKKKDAQQQALRAKALLPKNSAAYNRAENIRVEAEHIEDSARGVANS
Ga0318520_100795251	3300031897	Soil	AKALLPKNSAAFNRAENIHLEAERIEDAAGGGGMNSR
Ga0318520_107831112	3300031897	Soil	ALRAKALLPKNSAGYNRAENIHSEAEHIEDSAGGVVNVH
Ga0310912_104151313	3300031941	Soil	EGLSAGKKKDATQQASRAKAVLLKNSAAYNRAEEIQREAEKIENSN
Ga0310916_100350691	3300031942	Soil	LAEEGLAAGKKKDAQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0310913_100688354	3300031945	Soil	DNQFGMAALALAEEGLSAGKKKDATQQAIRAKALLPKNSAAYNRAESVQREAEKIENSE
Ga0310910_107686282	3300031946	Soil	KALLPKNSTAYNRAENIHLEAERIEDAAGGGGMNSR
Ga0306926_108450311	3300031954	Soil	QALRAKALLPKNSAAFNRAENIHLEAERIEDAAGGGGMNSR
Ga0307479_118313971	3300031962	Hardwood Forest Soil	ALRAKGLLPKNSAGYNQAENIHREAEQIEDAGNAVNSRYSR
Ga0318563_102854971	3300032009	Soil	KTLLPKSSAGYNRAENIHREAEQIDDSGGGLTNVR
Ga0318569_100975541	3300032010	Soil	LRAKALLPKNSAGYLQAENIHREAEHIDDSSSGLANIH
Ga0318507_102752031	3300032025	Soil	DNQIGMAALALAEEGLAAGKKKDAQQQALRAKALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0310911_101939891	3300032035	Soil	LALAEEGLAGGRKKEARQQALRAKALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR
Ga0318549_105274561	3300032041	Soil	DAQQQALRAKGLLPKNSAAYNRAENIHLEAEHIEDSAGGLVNVH
Ga0318506_100619621	3300032052	Soil	EEGLAGGRKKEARQQALRAKALLPKNSTAYNRAENIHLEAERIEDAAGGGGMNSR
Ga0318506_104302532	3300032052	Soil	KALLPKNSAAFNRAENIHLEAEHIEDSAGGVANSR
Ga0318505_103434811	3300032060	Soil	ALRAKALLPKSSAAYNRAENIRVEAEHIEDSASGVANSR
Ga0306924_102067061	3300032076	Soil	AKALLPKNSPGYLRAENIHREAEQIEDSGGGLANVH
Ga0306924_119398681	3300032076	Soil	AEEGLASGKKKDAQQQALRAKALLPKNSAAYNRAENIRVEAEHIEDSARGVANSR
Ga0318518_101673051	3300032090	Soil	KDAQQQALRAKALLPKNSAGYNRAENIHSEAEHIEDSAGGVVNVH
Ga0318518_105002111	3300032090	Soil	QQALRAKALLPKNSAGYNRAENIHLEAEHIEDSGGGLANVH
Ga0307471_1017317231	3300032180	Hardwood Forest Soil	KKLAQQQALRAKGLLPKNSTGYNRAENIHREAEQIEDAGNAVNAR
Ga0307471_1038459362	3300032180	Hardwood Forest Soil	GMAALALAKEALAAGKKKDAQQQALRAKGLLPKNSAGYNQAENIHREAEQIEDAGNAVNSRYSR
Ga0306920_1030004352	3300032261	Soil	LAEEGLVAGKKKDAQQQALRAKALLPKNSAGYNRAENIHREAEHMEESAGGVANSR
Ga0306920_1037753702	3300032261	Soil	KDAQQQALRAKALLPKNSAGYNRAENIHSEAEHMEESAGGVANSR
Ga0310914_105828951	3300033289	Soil	AKALLPKTSPGYTRANNIQREAGQMEDSTGGVVNVH
Ga0318519_109956751	3300033290	Soil	NQIGMAALALAEEGLAGGRKKDARQQALRAKALLPKNSTAYNRAENIHLEAEHMEDAGGGGANSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F042464

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences