NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F042874

Metagenome / Metatranscriptome Family F042874

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F042874
Family Type Metagenome / Metatranscriptome
Number of Sequences 157
Average Sequence Length 66 residues
Representative Sequence MSMAELLREVADLPPERQNELAAFLLHLRLKRDPAWRAELTRRIDDKNPDNWVSLVDWKKELAKGGE
Number of Associated Samples 133
Number of Associated Scaffolds 157

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 40.76 %
% of genes near scaffold ends (potentially truncated) 22.29 %
% of genes from short scaffolds (< 2000 bps) 77.71 %
Associated GOLD sequencing projects 130
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (71.975 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog
(7.643 % of family members)
Environment Ontology (ENVO) Unclassified
(25.478 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(33.758 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.74%    β-sheet: 0.00%    Coil/Unstructured: 45.26%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 157 Family Scaffolds
PF00266Aminotran_5 4.46
PF01037AsnC_trans_reg 2.55
PF05430Methyltransf_30 1.91
PF01408GFO_IDH_MocA 1.91
PF01120Alpha_L_fucos 1.91
PF13484Fer4_16 1.27
PF08757CotH 1.27
PF00072Response_reg 0.64
PF01557FAA_hydrolase 0.64
PF13569DUF4132 0.64
PF07635PSCyt1 0.64
PF06634DUF1156 0.64
PF13412HTH_24 0.64
PF02472ExbD 0.64
PF13472Lipase_GDSL_2 0.64
PF01546Peptidase_M20 0.64
PF04542Sigma70_r2 0.64
PF12730ABC2_membrane_4 0.64
PF07075DUF1343 0.64
PF13360PQQ_2 0.64
PF00115COX1 0.64
PF02673BacA 0.64
PF01850PIN 0.64
PF01467CTP_transf_like 0.64
PF08338DUF1731 0.64
PF00570HRDC 0.64
PF13633Obsolete Pfam Family 0.64
PF13229Beta_helix 0.64
PF13683rve_3 0.64
PF01268FTHFS 0.64
PF03547Mem_trans 0.64
PF13417GST_N_3 0.64
PF01259SAICAR_synt 0.64
PF07726AAA_3 0.64
PF13366PDDEXK_3 0.64
PF08753NikR_C 0.64
PF13442Cytochrome_CBB3 0.64
PF02781G6PD_C 0.64
PF07963N_methyl 0.64
PF03683UPF0175 0.64
PF03780Asp23 0.64
PF01370Epimerase 0.64
PF13365Trypsin_2 0.64
PF00263Secretin 0.64
PF02866Ldh_1_C 0.64
PF07516SecA_SW 0.64

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 157 Family Scaffolds
COG3669Alpha-L-fucosidaseCarbohydrate transport and metabolism [G] 1.91
COG4121tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmCTranslation, ribosomal structure and biogenesis [J] 1.91
COG5337Spore coat protein CotHCell wall/membrane/envelope biogenesis [M] 1.27
COG0039Malate/lactate dehydrogenaseEnergy production and conversion [C] 0.64
COG0152Phosphoribosylaminoimidazole-succinocarboxamide synthaseNucleotide transport and metabolism [F] 0.64
COG0364Glucose-6-phosphate 1-dehydrogenaseCarbohydrate transport and metabolism [G] 0.64
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.64
COG0653Preprotein translocase subunit SecA (ATPase, RNA helicase)Intracellular trafficking, secretion, and vesicular transport [U] 0.64
COG0679Predicted permease, AEC (auxin efflux carrier) familyGeneral function prediction only [R] 0.64
COG0848Biopolymer transport protein ExbDIntracellular trafficking, secretion, and vesicular transport [U] 0.64
COG0864Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domainTranscription [K] 0.64
COG1090NAD dependent epimerase/dehydratase family enzymeGeneral function prediction only [R] 0.64
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.64
COG1302Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) familyFunction unknown [S] 0.64
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.64
COG1743Adenine-specific DNA methylase, contains a Zn-ribbon domainReplication, recombination and repair [L] 0.64
COG1968Undecaprenyl pyrophosphate phosphataseLipid transport and metabolism [I] 0.64
COG2759Formyltetrahydrofolate synthetaseNucleotide transport and metabolism [F] 0.64
COG2886Predicted antitoxin, contains HTH domainGeneral function prediction only [R] 0.64
COG3876Exo-beta-N-acetylmuramidase YbbC/NamZ, DUF1343 familyCell wall/membrane/envelope biogenesis [M] 0.64
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.64


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms71.97 %
UnclassifiedrootN/A28.03 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000156|NODE_c0747932All Organisms → cellular organisms → Bacteria81460Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105883269All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia7486Open in IMG/M
3300000955|JGI1027J12803_100449060All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia647Open in IMG/M
3300001213|JGIcombinedJ13530_101047568All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium777Open in IMG/M
3300001471|JGI12712J15308_10097416All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia746Open in IMG/M
3300004047|Ga0055499_10047535All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium679Open in IMG/M
3300004080|Ga0062385_10475357All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300004152|Ga0062386_101818841Not Available508Open in IMG/M
3300004635|Ga0062388_101821815All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia625Open in IMG/M
3300005186|Ga0066676_10090507All Organisms → cellular organisms → Bacteria → PVC group1836Open in IMG/M
3300005435|Ga0070714_100650027Not Available1015Open in IMG/M
3300005468|Ga0070707_102137787Not Available527Open in IMG/M
3300005712|Ga0070764_10712290All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium619Open in IMG/M
3300005827|Ga0074478_1948240All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia769Open in IMG/M
3300006638|Ga0075522_10073540All Organisms → cellular organisms → Bacteria1908Open in IMG/M
3300009012|Ga0066710_103848993Not Available563Open in IMG/M
3300009091|Ga0102851_13250251Not Available522Open in IMG/M
3300009444|Ga0114945_10164699All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1276Open in IMG/M
3300009502|Ga0114951_10039431All Organisms → cellular organisms → Bacteria2934Open in IMG/M
3300009502|Ga0114951_10442779Not Available642Open in IMG/M
3300009629|Ga0116119_1113626All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia679Open in IMG/M
3300009630|Ga0116114_1054521All Organisms → cellular organisms → Bacteria1120Open in IMG/M
3300009639|Ga0116122_1208846All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium610Open in IMG/M
3300009669|Ga0116148_1000499All Organisms → cellular organisms → Bacteria49054Open in IMG/M
3300009762|Ga0116130_1283822Not Available528Open in IMG/M
3300010341|Ga0074045_10747666All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia619Open in IMG/M
3300010379|Ga0136449_101472731All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1044Open in IMG/M
3300010403|Ga0134123_11312692All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia760Open in IMG/M
3300011438|Ga0137451_1032212All Organisms → cellular organisms → Bacteria1522Open in IMG/M
3300012200|Ga0137382_10182334All Organisms → cellular organisms → Bacteria1437Open in IMG/M
3300012469|Ga0150984_115654725Not Available507Open in IMG/M
3300012923|Ga0137359_10469202All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1112Open in IMG/M
3300012943|Ga0164241_11286085Not Available541Open in IMG/M
(restricted) 3300013126|Ga0172367_10000705All Organisms → cellular organisms → Bacteria50891Open in IMG/M
3300013306|Ga0163162_12326306All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia616Open in IMG/M
3300014151|Ga0181539_1032918All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales2643Open in IMG/M
3300014154|Ga0134075_10239330All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium784Open in IMG/M
3300014162|Ga0181538_10124444All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales1499Open in IMG/M
3300014162|Ga0181538_10395782All Organisms → cellular organisms → Bacteria → PVC group737Open in IMG/M
3300014162|Ga0181538_10694191Not Available528Open in IMG/M
3300014201|Ga0181537_11009984All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia563Open in IMG/M
3300014312|Ga0075345_1048030All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales876Open in IMG/M
3300014489|Ga0182018_10698700All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales529Open in IMG/M
3300014491|Ga0182014_10000798All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales42800Open in IMG/M
3300014491|Ga0182014_10001056All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales37511Open in IMG/M
3300014491|Ga0182014_10277128Not Available869Open in IMG/M
3300014494|Ga0182017_10872994Not Available542Open in IMG/M
3300014498|Ga0182019_11230388Not Available551Open in IMG/M
3300014499|Ga0182012_10663451All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300014501|Ga0182024_10370710All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1863Open in IMG/M
3300014501|Ga0182024_10913638All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales1056Open in IMG/M
3300014502|Ga0182021_10711057All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1205Open in IMG/M
3300014502|Ga0182021_11669337All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300014502|Ga0182021_12704494Not Available596Open in IMG/M
3300014655|Ga0181516_10202541All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1007Open in IMG/M
3300014839|Ga0182027_10040449All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula5946Open in IMG/M
3300014839|Ga0182027_10318292Not Available1754Open in IMG/M
3300014839|Ga0182027_10387224Not Available1557Open in IMG/M
3300014839|Ga0182027_11004825All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia854Open in IMG/M
3300014839|Ga0182027_11577807Not Available643Open in IMG/M
3300014839|Ga0182027_12158647All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales530Open in IMG/M
3300014884|Ga0180104_1175918All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium638Open in IMG/M
3300015203|Ga0167650_1020576All Organisms → cellular organisms → Bacteria1807Open in IMG/M
3300017659|Ga0134083_10136204All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium988Open in IMG/M
3300017788|Ga0169931_10269723All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales1369Open in IMG/M
3300017929|Ga0187849_1117398All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1107Open in IMG/M
3300017935|Ga0187848_10012932All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales4694Open in IMG/M
3300017935|Ga0187848_10019036All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium3652Open in IMG/M
3300017946|Ga0187879_10637581Not Available592Open in IMG/M
3300017988|Ga0181520_10275337All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula1273Open in IMG/M
3300018005|Ga0187878_1024574All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula3063Open in IMG/M
3300018008|Ga0187888_1001837All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula19419Open in IMG/M
3300018013|Ga0187873_1336317Not Available552Open in IMG/M
3300018042|Ga0187871_10054325All Organisms → cellular organisms → Bacteria2399Open in IMG/M
3300018046|Ga0187851_10345974All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales856Open in IMG/M
3300018047|Ga0187859_10903735Not Available509Open in IMG/M
3300018063|Ga0184637_10642112Not Available591Open in IMG/M
3300019226|Ga0179934_1298690All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia576Open in IMG/M
3300019996|Ga0193693_1011756All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin1181744Open in IMG/M
3300021069|Ga0194062_1169853All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium634Open in IMG/M
3300021088|Ga0210404_10171538All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1149Open in IMG/M
3300021559|Ga0210409_10127421All Organisms → cellular organisms → Bacteria2339Open in IMG/M
3300022524|Ga0224534_1051270Not Available853Open in IMG/M
3300022526|Ga0224533_1084296All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium524Open in IMG/M
3300022555|Ga0212088_10694696Not Available607Open in IMG/M
3300022563|Ga0212128_10198582All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300023088|Ga0224555_1000454All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia62348Open in IMG/M
3300023091|Ga0224559_1177330All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300023311|Ga0256681_10479840All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1094Open in IMG/M
3300024186|Ga0247688_1000039All Organisms → cellular organisms → Bacteria72806Open in IMG/M
3300024249|Ga0247676_1087067Not Available519Open in IMG/M
3300024276|Ga0255205_1002852All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp. Tous-C6FEB3190Open in IMG/M
3300024491|Ga0255203_1005695All Organisms → cellular organisms → Bacteria → PVC group1961Open in IMG/M
3300024534|Ga0256357_1007237All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp. Tous-C6FEB2048Open in IMG/M
3300024547|Ga0255292_1067750All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia700Open in IMG/M
3300025499|Ga0207931_1011507All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2128Open in IMG/M
3300025929|Ga0207664_11421399Not Available615Open in IMG/M
3300027896|Ga0209777_10005134All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia15222Open in IMG/M
3300027896|Ga0209777_10170481All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1776Open in IMG/M
3300027908|Ga0209006_10004341All Organisms → cellular organisms → Bacteria12869Open in IMG/M
3300028265|Ga0255197_1037222All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia685Open in IMG/M
3300028563|Ga0265319_1008714All Organisms → cellular organisms → Bacteria4409Open in IMG/M
3300028563|Ga0265319_1053704Not Available1323Open in IMG/M
3300028573|Ga0265334_10284135All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300028577|Ga0265318_10239944Not Available661Open in IMG/M
3300028800|Ga0265338_10099654Not Available2372Open in IMG/M
3300029889|Ga0246001_1000895All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula16847Open in IMG/M
3300029907|Ga0311329_10653779All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium689Open in IMG/M
3300029910|Ga0311369_10736880All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium805Open in IMG/M
3300029911|Ga0311361_10042995All Organisms → cellular organisms → Bacteria7487Open in IMG/M
3300029911|Ga0311361_11487051Not Available512Open in IMG/M
3300029913|Ga0311362_10077690All Organisms → cellular organisms → Bacteria4632Open in IMG/M
3300029915|Ga0311358_10575354All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium857Open in IMG/M
3300029922|Ga0311363_11163728All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium655Open in IMG/M
3300029952|Ga0311346_11486500All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus508Open in IMG/M
3300029954|Ga0311331_10222629All Organisms → cellular organisms → Bacteria2115Open in IMG/M
3300030503|Ga0311370_11978775All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium583Open in IMG/M
3300030518|Ga0302275_10489309All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium620Open in IMG/M
3300030618|Ga0311354_11132798All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia712Open in IMG/M
3300030740|Ga0265460_13075545Not Available502Open in IMG/M
3300031057|Ga0170834_104357053All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1119Open in IMG/M
3300031229|Ga0299913_11949625Not Available534Open in IMG/M
3300031234|Ga0302325_10220842All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3219Open in IMG/M
3300031236|Ga0302324_101727644All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia799Open in IMG/M
3300031236|Ga0302324_102645180All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia608Open in IMG/M
3300031240|Ga0265320_10000012All Organisms → cellular organisms → Bacteria244592Open in IMG/M
3300031258|Ga0302318_10246961All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia874Open in IMG/M
3300031261|Ga0302140_10038541All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula5402Open in IMG/M
3300031524|Ga0302320_10410304All Organisms → cellular organisms → Bacteria1701Open in IMG/M
3300031525|Ga0302326_10133615All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia4321Open in IMG/M
3300031525|Ga0302326_10996388All Organisms → cellular organisms → Bacteria1178Open in IMG/M
3300031573|Ga0310915_10956701Not Available599Open in IMG/M
3300031576|Ga0247727_10067174All Organisms → cellular organisms → Bacteria → PVC group4109Open in IMG/M
3300031708|Ga0310686_106494932All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium977Open in IMG/M
3300031788|Ga0302319_10585991All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1166Open in IMG/M
3300031813|Ga0316217_10091636Not Available1427Open in IMG/M
3300031834|Ga0315290_10231932All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1609Open in IMG/M
3300031884|Ga0316220_1054064Not Available1642Open in IMG/M
3300031997|Ga0315278_10475345All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium1287Open in IMG/M
3300031997|Ga0315278_11119304Not Available777Open in IMG/M
3300032144|Ga0315910_10011203All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula6872Open in IMG/M
3300032164|Ga0315283_11505334Not Available689Open in IMG/M
3300032397|Ga0315287_10716929Not Available1181Open in IMG/M
3300032397|Ga0315287_10759129All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium1143Open in IMG/M
3300032397|Ga0315287_12369835All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium574Open in IMG/M
3300032561|Ga0316222_1090047All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1252Open in IMG/M
3300032561|Ga0316222_1192260Not Available727Open in IMG/M
3300032805|Ga0335078_12182421All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia585Open in IMG/M
3300032828|Ga0335080_11130396Not Available791Open in IMG/M
3300032893|Ga0335069_12489432Not Available536Open in IMG/M
3300033402|Ga0326728_10759332All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300033402|Ga0326728_10970584Not Available593Open in IMG/M
3300033433|Ga0326726_11842182Not Available589Open in IMG/M
3300033557|Ga0316617_100727177Not Available941Open in IMG/M
3300033823|Ga0334837_000155All Organisms → cellular organisms → Bacteria58451Open in IMG/M
3300034195|Ga0370501_0320155All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300034282|Ga0370492_0422128Not Available541Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog7.64%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen7.01%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.37%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.10%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.46%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.82%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere3.82%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.18%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil3.18%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater2.55%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.55%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.55%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog2.55%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.91%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.91%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.91%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.27%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.27%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs1.27%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.27%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.27%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.27%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.27%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.27%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.27%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.27%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.27%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge1.27%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.64%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion0.64%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.64%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.64%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.64%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.64%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.64%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.64%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.64%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.64%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.64%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.64%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.64%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.64%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.64%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.64%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.64%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.64%
PeatEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat0.64%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.64%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.64%
Sugar Cane Bagasse Incubating BioreactorEngineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor0.64%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000156Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobicEngineeredOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300004047Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005827Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBAEnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009091Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300009444Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3EnvironmentalOpen in IMG/M
3300009502Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaGEnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009630Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009669Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaGEngineeredOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011438Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014312Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1EnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300015203Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018005Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300019226Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC055_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019996Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2EnvironmentalOpen in IMG/M
3300021069Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-25mEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022524Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24EnvironmentalOpen in IMG/M
3300022526Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14EnvironmentalOpen in IMG/M
3300022555Alinen_combined assemblyEnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300023088Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34EnvironmentalOpen in IMG/M
3300023091Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34EnvironmentalOpen in IMG/M
3300023311Combined Assembly of Gp0281739, Gp0281740, Gp0281741EnvironmentalOpen in IMG/M
3300024186Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29EnvironmentalOpen in IMG/M
3300024249Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17EnvironmentalOpen in IMG/M
3300024276Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8dEnvironmentalOpen in IMG/M
3300024491Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8hEnvironmentalOpen in IMG/M
3300024534Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024547Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025499Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028265Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8hEnvironmentalOpen in IMG/M
3300028563Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaGHost-AssociatedOpen in IMG/M
3300028573Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaGHost-AssociatedOpen in IMG/M
3300028577Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaGHost-AssociatedOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300029889Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cmEnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030518Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031240Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaGHost-AssociatedOpen in IMG/M
3300031258Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1EnvironmentalOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031813Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoAEnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031884Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032561Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
NODE_0747932713300000156Sugar Cane Bagasse Incubating BioreactorMSMAELMRAVEALPKKQQKELAAFLLHLRLQEDPAWRTEMPRRIDDRNPKNWVRLEDLEKSLGSKKRKRK*
INPhiseqgaiiFebDRAFT_10588326973300000364SoilMAQLMREIASLPVEQQNELAAFLLHLRLQHDAEWRTEMTRRIDESTPENWVSLEDWKKELSASEEG*
JGI1027J12803_10044906033300000955SoilASLPVEQQNELAAFLLHLRLQHDAEWRTEMTRRIDESTPENWVSLEDWKKELSASEEG*
JGIcombinedJ13530_10104756833300001213WetlandMAELMRAVANLPSNQQNELAAYLLHLRLQHDAAWRSEMTRRIDDRTPSSWVDLEEWKKELEQSGKE*
JGI12712J15308_1009741623300001471Forest SoilMREVADMPPERQNELAAFLLQLRLRRDPAWRAELTNRIDDKNPDHWVGLEDWKKELAQGG
Ga0055499_1004753513300004047Natural And Restored WetlandsMSMADLMREVAALPQKRQNELAAFLLHLRLQQDPAWRTEMTRRIDDRNPKNWVRLEVLEKSLGKRKRK*
Ga0062385_1047535713300004080Bog Forest SoilMSMAELMREVSNLEPDRQRELAAFLLHLRLKDDSHWRSEMTRRIDDKNPENWLTSRQLKSAFSE*
Ga0062386_10181884123300004152Bog Forest SoilMAELMRVVASLPAQQQNELAAFLLHLRLRDDPAWRAEMTRKIDDKSEANWVLLEDLKKELAAGEEK*
Ga0062388_10182181523300004635Bog Forest SoilMAEIMREVADLSPERQNELAAFLLHLRLKRDPAWRAELTNRIDDKNPDNWVSLEDWKKELA*
Ga0066676_1009050713300005186SoilMTVAELMREVVNLPVPQQNELAAYLLHLRLQLLQDSVWRSELTRRIDDRDPSRGVSLEDWRKSLT*
Ga0070714_10065002723300005435Agricultural SoilMRMAELMRVVANLPKDQQDELAKFLLHLRRQYDPAWRTEMTWRIDDTGPASWVALEDVKKESAAGEEP*
Ga0070707_10213778713300005468Corn, Switchgrass And Miscanthus RhizosphereMSMTELKREVSTLPVEQQKELAGYLLHLRLQHDAAWRSEMTHRIDDHTPSKWTDLQDWKKEVESNGKK*
Ga0070764_1071229023300005712SoilMSMAEVMREIAGWPRAHQNKLAAFLLHLRLRSDTAWRTEMTRRIDDRNPENWVRLEDLSKSLKSRKRK*
Ga0074478_194824023300005827Sediment (Intertidal)MSMAEVMREVADWPRVRQNKLAAFLLHLRLREDPAWRTEMTRRIDDRNPKNWVRLEDLSKPLKRRAQK*
Ga0075522_1007354053300006638Arctic Peat SoilMSMTELMREAADLPPDRQNELVAFLLHLRLKRDPMWRTELTHRIDDKNADHWVSLEDWKKELATGGQ*
Ga0066710_10384899323300009012Grasslands SoilMSMSELMREVAGLTAEQRNELAAYLLHLRLTQDPAWRTEMTRRIDDQNPANWVKLEDWKKELAQNGEL
Ga0102851_1325025113300009091Freshwater WetlandsMSMAGLMREVANLPSNQQNELAAYLLHLRLQHDAAWRSEMTRRIDDRTPSSWVELQDWKKELEQSGKE*
Ga0114945_1016469913300009444Thermal SpringsMNMAELMRELASLPVERQNELAAYLLHLRLQHDPAWRTEMTRRIDDKTASNWVSLEDCRRELLPPGGE*
Ga0114951_1003943113300009502FreshwaterMSMAELMRAVASLPAQQQDELAAFLLHLRLQHDPAWRAEMARRIDDNEPAHWTTLEDWKTELAAGGERG*
Ga0114951_1044277923300009502FreshwaterMAELMRVVAAMPPELQNELAAFLLHLRLRQDADWQAEMGRRIDDHDPAHWTSLEDWKKELAANEERG*
Ga0116119_111362623300009629PeatlandMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVSLPDWKKASEANEAQ*
Ga0116114_105452133300009630PeatlandMSMAEIMREVADWPSKRQNELAACLLHLRLENDSAWRSEMTRRIDDKNQANWVSLPEWKKASE*
Ga0116122_120884613300009639PeatlandMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVALPDWKKASGADEEQ*
Ga0116148_1000499303300009669Anaerobic Digestor SludgeMSMAELMRAVASLPTKQQNELAAFLFHLRLQHDPAWRAEMTRRIDDTEPAHWTALEDWKGELASGEAKG*
Ga0116130_128382213300009762PeatlandMSMAEIMREVADWPSKRQNELAACLLHLRLENDSAWRSEMTRRIDDKNQANWVSLPEWKGLPS*
Ga0074045_1074766613300010341Bog Forest SoilMAEIMREVADWPAERQNELAAFLLHLRLEKDGAWRSEMTRRIDDKNPANWVPLPEWKKASEANSWI*
Ga0136449_10147273123300010379Peatlands SoilMSMAEIMRAVASLPTAQQNELAAFLLHLRLQQDHAWRAEMTRRIDDPDPAHWIALEDWKKELADGGKKG*
Ga0134123_1131269223300010403Terrestrial SoilMNMAALMRELASLSSKQQKEIAAYLLHLRLQHDADWRSEMTRRIDDKAPSNWTELQDWKKELEKNAGK*
Ga0137451_103221223300011438SoilMNMAELMREVSNLPAEQQKELAAYLLHLRLQHDAAWRSEMTQRIDDGTPDKWVDLQDWKKEIEKNGGE*
Ga0137382_1018233433300012200Vadose Zone SoilMAELMRELSNLPAEQQTELAAYLLHLRLQHDAAWRSEMTRRIDDPTPSHWVDLQDWKKE
Ga0150984_11565472523300012469Avena Fatua RhizosphereHAEVASLSAEQKDELAAYLLHLRITQDRQWRSEMARRIDSRDPKEWVTLADWKKELAQLTEP*
Ga0137359_1046920213300012923Vadose Zone SoilTLGMSMSELMREVAVLTAEQRNELAAYLLHLRLAQDPDWRTEMTRRIDDQNPANWVKLEDWKKELAQSGKLSRFHAS*
Ga0164241_1128608523300012943SoilAREKHDSPAMNMAELMREVSSLPADQQKELAAYLLHLRLQNDVAWRSEMTRRIDDKAPSSKWVELHDWKKEIEKNGKE*
(restricted) Ga0172367_10000705213300013126FreshwaterMSKAELKREMAALPLEDQNELAAFLLHLRLERDPVWRSEMTRRIDDQTPSQWVPLSDWKKELNTAE*
Ga0163162_1232630623300013306Switchgrass RhizosphereMNMAELMREGSNLPAEQQKELAAYLLHLRLEHDTAWRSEMTHRIDDRTPANWVDLQDWRKEVEKHGGE*
Ga0181539_103291823300014151BogMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNAANWVSLPEWKKASEANEEQ*
Ga0134075_1023933013300014154Grasslands SoilMSVAELMREVVNLPVPQQNELAAYLLHLRLQLLQDSVWRSELTRRIDDRDPSRGVSLEDWRKSLT*
Ga0181538_1012444433300014162BogMAEIMREVADWPSERQNQLAAFLLHLRLEKDSSLLSEITRRIDDKNSANWVSLPEWKKASEANEEQ*
Ga0181538_1039578223300014162BogMSMAELLREVADLPPERQNELAAFLLHLRLKRDPAWRAELTRRIDDKNPDNWVSLVDWKKELAKGGE*
Ga0181538_1069419113300014162BogMAELMRAVASLPAAQQNELAAFLPHLRLQHDPAWRTEMTRRIDDKDPANWTTLEDWKKLKIVDLKSAGR*
Ga0181537_1100998423300014201BogMSMAEVMREIAGWPRAQQNKLEAFLLHLRLRSDTAWRAEMTRRIDDRTPEKWVRLEDLRKPLKGPKRK*
Ga0075345_104803013300014312Natural And Restored WetlandsMSMAELMREVAALPQKRQNELAAFLLHLRLQQDPAWRTEMTRRIDDRNPKNWVRLEDLEKSLGKRKRK*
Ga0182018_1069870023300014489PalsaMAELMREVAELPPERQNELAAFLLHLRLQRDPAWRAELTNRIDDKNPDHWVSLEDWKKELAEGRQ*
Ga0182014_10000798373300014491BogMREVADWPAERQNELAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVSLTEWKKASEASEK*
Ga0182014_10001056143300014491BogMREVADWPAERQNELAAFLLHLRLEKDGAWRSEMTRRIDDKNPANWVPLPEWKKASEANSWI*
Ga0182014_1027712823300014491BogMSMAELMRAVVELPAQQQNELAAFLLHLRLQQDAVWRTEMTRRIDDQDSPHWVNLESWKAELFSGRQP*
Ga0182017_1087299423300014494FenMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELASGSQP*
Ga0182019_1123038823300014498FenMSMAEVMREVAAWPRAHQKQLAGFLLHLRLRDDAAWRTEMTRRIDDRDPKNWVRLENLTRPLKRRAKK*
Ga0182012_1066345123300014499BogMSMAEVMRAISGWPRAHQNKLAAYLLHLRLRNDTASRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE*
Ga0182024_1037071013300014501PermafrostMSMAEIMREVSVLPVEQQNKLAAYLLHLRLQHDDAWRTEMTRRIDDQDTAHWASLENWKSELAGGKKT*
Ga0182024_1091363823300014501PermafrostMSMAELLREMADLPPERQNELAAFLLHLRLQRDPAWRAELTNRIDDKNPDHWVSLEDWKKELAEGRQ*
Ga0182021_1071105723300014502FenMRSAAEDTLRMTMAELMREVANLAPEQKDELAAYLLHVRLAQDEAWRTEMTRKVDDRDPAHWISLEDWKKELRQTSEK*
Ga0182021_1166933723300014502FenMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELAPGSQP*
Ga0182021_1270449413300014502FenMSMAELMRAVASLPVEQQKELAAFLLHLRLQHDPAWRAEMARRIDDNEPAHWATLEDWKKELAASGEEG*
Ga0181516_1020254123300014655BogMSMAELMRAVAGLPAEQQKELAAFLLHLRLRQDPEWRAEMARRIDDRDPAHWVSLEAWKQELAAAEGQG*
Ga0182027_1004044933300014839FenMSMAELMRVVVGLPVQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELASGSQP*
Ga0182027_1031829223300014839FenMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAEFASGSLP*
Ga0182027_1038722433300014839FenMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELASGSQP*
Ga0182027_1100482523300014839FenMSMAELMRAVASLSAAQQNELAAFLLHLRLQRDPAWRAEMTRRIDDADPAHWTTLEAWKNELAAGGQKG*
Ga0182027_1157780723300014839FenMSMAEIMREVADWPSERRNELAAFLLHLRFVNDSAWRPEMNRRIDDKDPANLVSLEEWKKACGQCAGF*
Ga0182027_1215864713300014839FenIMREVADWPSERQNELAAFLLHLRLEKDSAWRSEMTRRIDDKNQANWVSLAEWKKASGESEEP*
Ga0180104_117591823300014884SoilMNMAELMREVSNLPAEQQKELAAYLLHLRLQHDAAWRSEMTQRIDDRTPANWVDLQDWKKEVEKNGGE*
Ga0167650_102057633300015203Glacier Forefield SoilMSMAEVMREVADWPRMRQNKLAAYLLHLRLRADPGWRAEMTRRIDDRNPKNWVRLEDLSKSFKRRTRK*
Ga0134083_1013620423300017659Grasslands SoilMSVAELMREVANLPAQQQNELAAYLLHLRLQLLQDSVWRSELTRRIDDRDPSRGVSLEDWRKSLT
Ga0169931_1026972323300017788FreshwaterMSKAELKREMAALPLEDQNELAAFLLHLRLERDPVWRTEMTRRIDDQAPGQWVALSDWKKEIGTAE
Ga0187849_111739823300017929PeatlandMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVALPDWKKASGADEEQ
Ga0187848_1001293223300017935PeatlandMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVALPDWKKASGADEEQ
Ga0187848_1001903633300017935PeatlandMAEIMREVADWPSKRQNELAACLLHLRLENDSAWRSEMTRRIDDKNQANWVSLPEWKKAS
Ga0187879_1063758113300017946PeatlandMSMAEIMREVADWPAERQDELAAFLLHLRLEKDGAWRSEMTRRIDDNNPANWIPLPEWKKTCAEDKEQ
Ga0181520_1027533723300017988BogMSMAQLMRIVASLPDDQQKELAAFLLHLRLRQDPEWRTELARRIDDNDPAHWTSLDDWKKESAAN
Ga0187878_102457443300018005PeatlandMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSTRWVSLENWKAELASGSPP
Ga0187888_1001837113300018008PeatlandMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVSLPDWKKASEANEAQ
Ga0187873_133631713300018013PeatlandMSMAEIMREVADWPSKRQNELAACLLHLRLENDSAWRSEMTRRIDDKNQANWVSLPEWKKASE
Ga0187871_1005432553300018042PeatlandMAEIMREVADWPAERQDELAAFLLHLRLEKDGAWRSEMTRRIDDNNPANWIPLPEWKKTCAEDKEQ
Ga0187851_1034597423300018046PeatlandMSMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPVNWVPLPEWKKASG
Ga0187859_1090373513300018047PeatlandMSMAEIMREVADWPPERQNELAAYLLHLRVQQDSAWRSEMTRRINDRNPANWVALPEWKKAAAAN
Ga0184637_1064211223300018063Groundwater SedimentMSVAELMREVANLPAHQQNELAAYLLHLRLQQDPAWRSEMTRRIDDREPSRWVSLDDWKKEIDGGGER
Ga0179934_129869013300019226Anaerobic Digestor SludgeMSMAELMRAVASLPTKQQNELAAFLFHLRLQHDPAWRAEMTRRIDDTEPAHWTALEDWKGELASGEAKG
Ga0193693_101175633300019996SoilMSMAELMREVASLPVQQQNELAAFLMHLRLQHDPEWRTEMTRRIDDSSPGNWVSLEDWKKELSTREGE
Ga0194062_116985313300021069Anoxic Zone FreshwaterMSMAELMRAVASLPAQQQNELAAFLLHLRLQHDPAWRAEMARRIDDNEPAHWTTLEDWKTELAAGGERG
Ga0210404_1017153813300021088SoilMSMAELMRTGASLPEEQQSELAAFLLHLRLRNDPVWRSGMTKRIDDTDAANRVSLEDWKKELAERGGTPA
Ga0210409_1012742133300021559SoilMAELMRVVAALPEQQQHELAAFLLHLRMRDDPAWRAGMTRKIDDRNEANWVPLEELKKEFGAGEER
Ga0224534_105127023300022524SoilMAEIMREVADWPAERQNELAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVSLTEWKKASEASEK
Ga0224533_108429623300022526SoilMREVATWPRTHQKQLAGFLLHLRLRDDAAWRTEMTRRIDDRDPKNWVRLENLTKPLKRRAKK
Ga0212088_1069469623300022555Freshwater Lake HypolimnionMSMAELMRVVAAMPPELQNELAAFLLHLRLRQDADWQAEMGRRIDDHDPAHWTSLEDWKKELAANEERG
Ga0212128_1019858223300022563Thermal SpringsMNMAELMRELASLPVERQNELAAYLLHLRLQHDPAWRTEMTRRIDDKTASNWVSLEDCRRELLPPGGE
Ga0224555_1000454413300023088SoilMREVADWPAERQNELAAFLLHLRLEKDGAWRSEMTRRIDDKNPANWVPLPEWKKASEANSWI
Ga0224559_117733013300023091SoilMSMAEVMREVATWPRTHQKQLAGFLLHLRLRDDAAWRTEMTRRIDDRDPKNWVRLENLTKPL
Ga0256681_1047984033300023311FreshwaterMSMAELMRVVVGLPAQQQNQLAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELASGSQP
Ga0247688_1000039263300024186SoilMAEVMREVADWPRVRQNKLAAFLLHLRLREDPAWRTEMTRRIDDRNPKNWVRLEDLSKWFKRRAQK
Ga0247676_108706723300024249SoilMSMAEVMREVADWPRVRQNKLAAFLLHLRLREDPAWRTEMTRRIDDRNPKNWVRLEDLSKWFKRRAQK
Ga0255205_100285233300024276FreshwaterMSKAELKREMAALPLEDQNELAAYLLHLRLERDPVWRTEMTHRIDDRTPGQWVPLADWKKELNAAE
Ga0255203_100569513300024491FreshwaterAELKREMAALPLEDQNELAAYLLHLRLERDPVWRTEMTHRIDDRTPGQWVPLADWKKELNAAE
Ga0256357_100723723300024534FreshwaterMAALPLEDQNELAAYLLHLRLERDPVWRTEMTHRIDDRTPGQWVPLADWKKELNAAE
Ga0255292_106775033300024547FreshwaterHVMSKAELKREMAALPLEDQNELAAYLLHLRLERDPVWRTEMTHRIDDRTPGQWVPLADWKKELNAAE
Ga0207931_101150733300025499Arctic Peat SoilMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELASGNPP
Ga0207664_1142139913300025929Agricultural SoilMRVVANLPKDQQDELAKFLLHLRRQYDPAWRTEMTWRIDDTGPASWVALEDVKKESAAGEEP
Ga0209777_1000513493300027896Freshwater Lake SedimentMSMAELMRAVASLPAEQQNELAAFLLHLRLQHDPAWRTEMARRIDDNEPTHWTTLEDWKKELAASGEEG
Ga0209777_1017048133300027896Freshwater Lake SedimentMAELMREVARLPSEQQTELAAYLLHLRLEHDAAWHAEMTRRIDDRTPSSWVDLQDWKKELEQSGKE
Ga0209006_10004341103300027908Forest SoilMAELMREVADMPPERQNELAAFLLQLRLRRDPAWRAELTNRIDDKNPDHWVGLEDWKKELAQGG
Ga0255197_103722233300028265FreshwaterPHVMSKAELKREMAALPLEDQNELAAYLLHLRLERDPVWRTEMTHRIDDRTPGQWVPLADWKKELNAAE
Ga0265319_100871443300028563RhizosphereMSMAELMRAVSGLPPAQQNELAAFLLHLRLQHDPAWRTEMTRRIDDRDPARWVSLEDWKTESKGESKS
Ga0265319_105370433300028563RhizosphereMSMAELMRAVSGLPPAQQNELAAFLLHLRLQHDPAWRTEMTRRIDDCDPARWVSLDDWRTESKGESKS
Ga0265334_1028413513300028573RhizosphereVFGVSMAELMRVVASLPEQQQHELAAFLLHLRMRDDPAWRAEMTRKIDDKNEANWVLLEELKKEFGAGEER
Ga0265318_1023994413300028577RhizosphereMSMAELMRAVSGLPPAQQNELAAFLLHLRLQHDPAWRTEMTRRIDDRDPARWVSLEDWKTESK
Ga0265338_1009965413300028800RhizosphereMAELMRVVASLPEQQQHELAAFLLHLRMRDDPAWRAEMTRKIDDKNEANWVLLEELKKEFGAGEER
Ga0246001_1000895123300029889PeatMAEIMREVADWPSERQNQLAAFLLHLRLEKDSAWRSEMTRRIDDKNPANWVSLPDWKKASEANEAQ
Ga0311329_1065377933300029907BogMSMAEVMRAISGWPRAHQNKLAAYLLHLRLRNDTAWRTEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311369_1073688033300029910PalsaMSMAEVMREIAGWPRAHQNKLAAFLLHLRLRSDTAWRAEMTRRIDDRNPENWVRLEDLSKSLKGRKKK
Ga0311361_1004299543300029911BogMSMAEVMRAISGWPRAHQNKLAAYLLHLRLRNDTAWRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311361_1148705123300029911BogMREVAGWPVERQNELAAFLLHLRIEKAPEWRTERARRIDDTDPSNWVPLSELKKSALREC
Ga0311362_1007769013300029913BogPRAHQNKLAAYLLHLRLRNNTASRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311358_1057535433300029915BogNPFGMSMAEVMRAISGWPRAHQNKLAAYLLHLRLRNDTASRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311363_1116372823300029922FenVSKAEIMREVAGWPVERQNELAAFLLHLRIEKAPEWRTEMARRIDDTDPSNWVSLPECKKSVLGRKKKK
Ga0311346_1148650013300029952BogMREVAGWPVERQNELAAFLLHLRIEKAPEWRTEMARRIDDTDPSNWVSLPECKKSVL
Ga0311331_1022262913300029954BogEVMRAISGWPRAHQNKLAAYLLHLRLRNDTAWRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311370_1197877513300030503PalsaREIAGWPRAHQNKLAAFLLHLRLRSDTAWRAEMTRRIDDRNPENWVRLEDLSKSLKGRKK
Ga0302275_1048930913300030518BogWPRAHQNKLAAYLLHLRLRNDTAWRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0311354_1113279813300030618PalsaDFCSFCSYDSAMSMAELMREVADLPPERQNELAAFLLHLRLKRDPAWRAELANRIDDKNPDNWVSLEDWKKELAKGGQ
Ga0265460_1307554523300030740SoilVREAANLPPERQDELAAYLLDLRLKRDPVWRAKLTHRIDDKNPDNWVSLEEWKKELSHAK
Ga0170834_10435705323300031057Forest SoilMSMAEVMREVADWPRVRQNKLAAFLLHLRLREDPAWRTEMTRRIDDRTSKHWVRLEDLQKSFKRRARK
Ga0299913_1194962513300031229SoilCPKVGMEIAIAFKNCDCHGMNMAELMKEVSSLPADQQKELAAYLLHLRLQNDATWRSEMTHDWKKEIEKNGKD
Ga0302325_1022084243300031234PalsaMSMAELMREVAGLPPERQNELAAFLLHLRLQRDPAWRAELTSRIDDKKPDHWVSLEDWKK
Ga0302324_10172764433300031236PalsaRSCERGGRKFVDFCSFCSYDSAMSMAELMREVADLPPERQNELAAFLLHLRLKRDPAWRAELANRIDDKNPDNWVSLEDWKKELAKGGQ
Ga0302324_10264518013300031236PalsaMREVADLPPERQNELAAFLLHLRLQRDPAWRTELTNRIDDKDPEHWVSLEDWKKEFAKGG
Ga0265320_100000121223300031240RhizosphereMSTAELMRTVAGLPADQQNKLAAFLQRLRMRHDAAWRKEMARRLDDRRPGRWVSLGDWKKKAAKS
Ga0302318_1024696113300031258BogTWPRAHQNKLAAYLLHLRLRNDTAWRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0302140_1003854143300031261BogMSMAEVMRAISGWPRAHQNKLAAYLLHLRLRNNTASRAEMTRRIDDRNPENWVRLEDLTKSLKGRRRE
Ga0302320_1041030413300031524BogLFVSKAEIMREVAGWPVERQNELAAFLLHLRIEKAPEWRTERARRIDDTDPSNWVPLSELKKSALREC
Ga0302326_1013361533300031525PalsaMSMAELMREVADLPPERQNELAAFLLHLRLKRDPAWRAELANRIDDKNPDNWVSLEDWKKELAKGGQ
Ga0302326_1099638823300031525PalsaMSMTELMREVADLPPERQNELAAYLLHLRLKRDPAWRTELTNRIDDRNPDHWVSLEDWKKEVAAGGQ
Ga0310915_1095670123300031573SoilMSMAELMRVVASLPPEQQNELAAYLMHLRLQHDAGWRAEMTRRIDDKEHKNWVSLQELKEEFKSGEKK
Ga0247727_1006717423300031576BiofilmMNMAELMREVAGLPNERQHELAAYLLHLRLQRDPVWRSEMTRRIDDRTPGNWVALDDWKKELAGKGSVE
Ga0310686_10649493233300031708SoilMSMAEVMREIAGWPRAHQNKLAAFLLHLRLRGDTAWRAEMTRRIDDRTPGNWVRLEDLSKSLKGRKRK
Ga0302319_1058599123300031788BogMREVAGWPVERQNELAAFLLHLRIEKAPEWRTEMARRIDDTDPSNWVPLSELKKSALREC
Ga0316217_1009163613300031813FreshwaterMREIAAWPRTHQKQLAGFLLHLRLRDDAAWRTEMTRRIDDRNPKNWVRLENLTRPLK
Ga0315290_1023193233300031834SedimentMAELMREVARLPSEQQTELAAYLLHLRLEHDAAWHAEMTRRIDDRTPSSWVDLQDWKKELGQSGKE
Ga0316220_105406433300031884FreshwaterMAELMRVVAGLPSEQQKELAAFLLHLRLERDSEWRAEMTKRIDCNDAGHWTSLENWKEELAAGEGQG
Ga0315278_1047534533300031997SedimentMAELMREVARLPSEQQTELAAYLLHLRLEHDAAWHSEMTRRIDDRTPSSWVDLQDWKKELGQSGKE
Ga0315278_1111930423300031997SedimentMAELMREVASLPKARQAELTAFLLHLRLQQDSTWRTEMTRRIDDSHPDHWVSLKNWKQELGVGRKVKK
Ga0315910_1001120333300032144SoilMNMAELMREVSNLPAEQQKELAAYLLHLRLQHDTAWRSEMTQRIDDRTPANWVDLQDWKKEVEKNGGE
Ga0315283_1150533423300032164SedimentMSMAELMRTVASLPAAQQNELAAFLLHLRLQHDPAWRAEMARRVDDQDPANWTTLEDWKKELAAGGQKG
Ga0315287_1071692923300032397SedimentMAELMREVARLPSEQQTELAAYLLHLRLEHDAAWHSEMTRRIDDRTPSSWVDLQDWKKELEQSGKE
Ga0315287_1075912913300032397SedimentMKMAELMREVASLPKARQAELAAFLLHLRLLQDSTWRTEMTRRIDDSHPGHWVSLKDWKRELGAGSKAKK
Ga0315287_1236983513300032397SedimentMSMAEWMRAVASLPAAQQNESAAFLLHLRLQHDPAWRTDMAQRIDDKDPAYWTTLEDWKQEFAAGGDKG
Ga0316222_109004723300032561FreshwaterMSMAEVMREIAAWPRTHQKQLAGFLLHLRLRDDAAWRTEMTRRIDDRNPKNWVRLENLTRPLKRRAKK
Ga0316222_119226013300032561FreshwaterMAELMRVVAGLPSEQQKELAAFLLHLRLERDSEWRAEMTKRIDCNDAGHWTSLENWK
Ga0335078_1218242113300032805SoilMSMAEIMREVAELPVERQNELAAYLLHLRLKQDAEWRSEMTRRIDEMNPSRWVSLESWKSELAAGGSQ
Ga0335080_1113039633300032828SoilMAELMREVANLPSDQQDKLAAYLLHLRLQNDAAWRSEMTRRIDDRTPSRWVDLQDWKKELEQGGKS
Ga0335069_1248943213300032893SoilMSMAELMREVASLPSDQQNELAAYLLHLRLQHDAAWRSEMTRRIDDRTPSSWVELQDWKNELKQGGKE
Ga0326728_1075933223300033402Peat SoilAGLPAEQQTELAAFLLHLRLRRDPEWRAEMARRIDDGDPSHWTSLEDWKKELAASEGEDPLRSTSS
Ga0326728_1097058423300033402Peat SoilMSMADLMREVAGLEPERQNELASYLLHLRLERDPEWRSELTKRIDDKNPNNWVSLEDWKKEIAQAEG
Ga0326726_1184218233300033433Peat SoilLMRAVASLPTAQQNELAAFLLHLRLQHDPAWRKEMTRRIDDREPANWMVLDDWKKELAAGGEKG
Ga0316617_10072717723300033557SoilMSMAELMRAVASLPAAQQNELAAFLLHLRLRHDPAWRTEMTRRIDDRDPANWTALEDWKQ
Ga0334837_000155_48086_482863300033823SoilMAEIMREVADWPAERQNELAAFLLHLRLEKDGAWRSEMTRRIDDKNPANWVPLPEWKKASEANSWI
Ga0370501_0320155_7_2133300034195Untreated Peat SoilMSMAELMRVVVGLPAQQQNELAAFLLHLRLQHDAAWRTEMTRRIDDKDSARWVSLENWKAELAPGSQP
Ga0370492_0422128_191_3943300034282Untreated Peat SoilMAELMRVVAGLPSEQQKELAAFLLHLRLERDAEWRAEMARRIDDNDPGHWTSLENWKEELAAGEGQG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.