Metagenome / Metatranscriptome Family F043066

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F043066
Family Type	Metagenome / Metatranscriptome
Number of Sequences	157
Average Sequence Length	62 residues
Representative Sequence	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEGFQPRR
Number of Associated Samples	128
Number of Associated Scaffolds	157

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	7.10 %
% of genes near scaffold ends (potentially truncated)	28.03 %
% of genes from short scaffolds (< 2000 bps)	83.44 %
Associated GOLD sequencing projects	118
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.153 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (12.739 % of family members)
Environment Ontology (ENVO)	Unclassified (23.567 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.955 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.91% Coil/Unstructured: 76.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 157 Family Scaffolds
PF04392	ABC_sub_bind	3.18
PF03401	TctC	1.91
PF00072	Response_reg	1.91
PF00154	RecA	1.91
PF00248	Aldo_ket_red	1.27
PF00691	OmpA	1.27
PF00582	Usp	0.64
PF13392	HNH_3	0.64
PF00571	CBS	0.64
PF10129	OpgC_C	0.64
PF12616	DUF3775	0.64
PF10006	DUF2249	0.64
PF00528	BPD_transp_1	0.64
PF13361	UvrD_C	0.64
PF04964	Flp_Fap	0.64
PF13460	NAD_binding_10	0.64
PF01381	HTH_3	0.64
PF03713	DUF305	0.64
PF04828	GFA	0.64
PF00701	DHDPS	0.64
PF13505	OMP_b-brl	0.64
PF13676	TIR_2	0.64
PF07690	MFS_1	0.64
PF00216	Bac_DNA_binding	0.64
PF06850	PHB_depo_C	0.64

COG ID	Name	Functional Category	% Frequency in 157 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.18
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.91
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.91
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.27
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.64
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.64
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.64
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.64
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.64
COG4553	Poly-beta-hydroxyalkanoate depolymerase	Lipid transport and metabolism [I]	0.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
All Organisms	root	All Organisms	31.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
cellular organisms	root	All Organisms → cellular organisms	31.21 %
Viruses	superkingdom	All Organisms → Viruses	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.21 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.75 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.29 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.10 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.27 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.91 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.18 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.55 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.27 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.64 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.64 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.64 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.55 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.55 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.64 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.64 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.64 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.64 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.55 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.27 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.27 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.64 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.64 %
Skermanella aerolata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	0.64 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.64 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.64 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.15 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.55 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.27 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.64 %
Bradyrhizobium sp. C9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	0.64 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.64 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.64 %
Skermanella aerolata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	0.64 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.64 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.64 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.64 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.64 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908028\|beta3_all_NODE_64427_len_769_cov_11_426528	Not Available	819	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig47264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1072	Open in IMG/M
2199352025\|deepsgr__Contig_137751	Not Available	563	Open in IMG/M
3300000729\|JGI12371J11900_1003513	All Organisms → cellular organisms → Bacteria → PVC group	1124	Open in IMG/M
3300000731\|JGI12381J11899_1000930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2089	Open in IMG/M
3300001385\|JGI20193J14888_1028668	Not Available	793	Open in IMG/M
3300001414\|JGI20174J14864_1000246	All Organisms → cellular organisms → Bacteria → Proteobacteria	2064	Open in IMG/M
3300002549\|JGI24130J36418_10068756	Not Available	868	Open in IMG/M
3300003324\|soilH2_10278713	All Organisms → cellular organisms → Bacteria → Proteobacteria	2502	Open in IMG/M
3300004091\|Ga0062387_101318912	Not Available	571	Open in IMG/M
3300004092\|Ga0062389_102489016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	686	Open in IMG/M
3300005158\|Ga0066816_1018956	Not Available	568	Open in IMG/M
3300005162\|Ga0066814_10004141	Not Available	1477	Open in IMG/M
3300005164\|Ga0066815_10087074	Not Available	571	Open in IMG/M
3300005764\|Ga0066903_100079710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	4264	Open in IMG/M
3300005764\|Ga0066903_102523766	Not Available	995	Open in IMG/M
3300005938\|Ga0066795_10052100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1206	Open in IMG/M
3300005938\|Ga0066795_10228671	Not Available	552	Open in IMG/M
3300005995\|Ga0066790_10186309	Not Available	887	Open in IMG/M
3300006041\|Ga0075023_100076630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1110	Open in IMG/M
3300006050\|Ga0075028_100455035	Not Available	741	Open in IMG/M
3300006052\|Ga0075029_100712587	Not Available	678	Open in IMG/M
3300006055\|Ga0097691_1018995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3029	Open in IMG/M
3300006059\|Ga0075017_100254518	Not Available	1285	Open in IMG/M
3300006059\|Ga0075017_100286879	Not Available	1213	Open in IMG/M
3300006059\|Ga0075017_100950839	Not Available	668	Open in IMG/M
3300006102\|Ga0075015_100142787	Not Available	1239	Open in IMG/M
3300006172\|Ga0075018_10073595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300006174\|Ga0075014_100196723	Not Available	1014	Open in IMG/M
3300006174\|Ga0075014_100823227	Not Available	550	Open in IMG/M
3300006864\|Ga0066797_1130618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	878	Open in IMG/M
3300007740\|Ga0104326_123704	Not Available	1732	Open in IMG/M
3300009101\|Ga0105247_11395139	Not Available	567	Open in IMG/M
3300009506\|Ga0118657_10024719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9441	Open in IMG/M
3300009637\|Ga0116118_1130848	Not Available	823	Open in IMG/M
3300009764\|Ga0116134_1234811	Not Available	634	Open in IMG/M
3300009792\|Ga0126374_11135780	Not Available	622	Open in IMG/M
3300009839\|Ga0116223_10289164	Not Available	980	Open in IMG/M
3300009839\|Ga0116223_10365761	Not Available	852	Open in IMG/M
3300010341\|Ga0074045_10130692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1718	Open in IMG/M
3300010343\|Ga0074044_10343680	Not Available	979	Open in IMG/M
3300010358\|Ga0126370_11557886	Not Available	630	Open in IMG/M
3300010379\|Ga0136449_101805484	Not Available	915	Open in IMG/M
3300010379\|Ga0136449_102181796	Not Available	809	Open in IMG/M
3300012010\|Ga0120118_1163711	Not Available	529	Open in IMG/M
3300012019\|Ga0120139_1001145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	8020	Open in IMG/M
3300012019\|Ga0120139_1035069	Not Available	1170	Open in IMG/M
3300012931\|Ga0153915_12135634	Not Available	655	Open in IMG/M
3300012971\|Ga0126369_11702017	Not Available	720	Open in IMG/M
3300013770\|Ga0120123_1138953	Not Available	572	Open in IMG/M
3300013772\|Ga0120158_10026700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	4534	Open in IMG/M
3300013772\|Ga0120158_10436738	Not Available	593	Open in IMG/M
3300014056\|Ga0120125_1026325	Not Available	1237	Open in IMG/M
3300014056\|Ga0120125_1099909	Not Available	677	Open in IMG/M
3300014058\|Ga0120149_1247819	Not Available	500	Open in IMG/M
3300014156\|Ga0181518_10331276	Not Available	750	Open in IMG/M
3300014159\|Ga0181530_10192469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1128	Open in IMG/M
3300014164\|Ga0181532_10237184	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300014164\|Ga0181532_10501908	Not Available	665	Open in IMG/M
3300014501\|Ga0182024_10162030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3121	Open in IMG/M
3300014638\|Ga0181536_10014433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6925	Open in IMG/M
3300014638\|Ga0181536_10063477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2311	Open in IMG/M
3300014638\|Ga0181536_10100590	Not Available	1643	Open in IMG/M
3300014638\|Ga0181536_10490168	Not Available	536	Open in IMG/M
3300015371\|Ga0132258_12992152	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300015372\|Ga0132256_102704066	Not Available	596	Open in IMG/M
3300015374\|Ga0132255_100071846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4602	Open in IMG/M
3300016270\|Ga0182036_10138124	Not Available	1718	Open in IMG/M
3300016422\|Ga0182039_10129087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921	Open in IMG/M
3300016750\|Ga0181505_11129349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	739	Open in IMG/M
3300016750\|Ga0181505_11131394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1100	Open in IMG/M
3300017930\|Ga0187825_10136404	Not Available	862	Open in IMG/M
3300017930\|Ga0187825_10236672	Not Available	666	Open in IMG/M
3300017930\|Ga0187825_10281926	Not Available	615	Open in IMG/M
3300017934\|Ga0187803_10031578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2105	Open in IMG/M
3300017936\|Ga0187821_10144560	Not Available	896	Open in IMG/M
3300017939\|Ga0187775_10411543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	561	Open in IMG/M
3300017940\|Ga0187853_10317790	Not Available	701	Open in IMG/M
3300017961\|Ga0187778_11159683	Not Available	540	Open in IMG/M
3300017974\|Ga0187777_10403743	Not Available	946	Open in IMG/M
3300017993\|Ga0187823_10389124	Not Available	505	Open in IMG/M
3300018001\|Ga0187815_10125359	Not Available	1085	Open in IMG/M
3300018008\|Ga0187888_1309382	Not Available	606	Open in IMG/M
3300018014\|Ga0187860_1117089	Not Available	1185	Open in IMG/M
3300018033\|Ga0187867_10251904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	995	Open in IMG/M
3300018038\|Ga0187855_10146373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1411	Open in IMG/M
3300018057\|Ga0187858_10360085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	911	Open in IMG/M
3300018060\|Ga0187765_10763400	Not Available	641	Open in IMG/M
3300018072\|Ga0184635_10092163	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300018088\|Ga0187771_10036818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3757	Open in IMG/M
3300019356\|Ga0173481_10610397	Not Available	575	Open in IMG/M
3300020022\|Ga0193733_1176511	Not Available	563	Open in IMG/M
3300022883\|Ga0247786_1010331	Not Available	1720	Open in IMG/M
3300024055\|Ga0247794_10228823	Not Available	608	Open in IMG/M
3300025619\|Ga0207926_1023541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1914	Open in IMG/M
3300025625\|Ga0208219_1045848	Not Available	1110	Open in IMG/M
3300025986\|Ga0207658_10959874	Not Available	779	Open in IMG/M
3300026271\|Ga0209880_1080889	Not Available	675	Open in IMG/M
3300026800\|Ga0207742_100523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4119	Open in IMG/M
3300026800\|Ga0207742_105812	Not Available	1031	Open in IMG/M
3300026800\|Ga0207742_106232	Not Available	982	Open in IMG/M
3300026828\|Ga0207502_104701	Not Available	671	Open in IMG/M
3300026835\|Ga0207782_119818	Not Available	519	Open in IMG/M
3300026860\|Ga0207823_109926	Not Available	664	Open in IMG/M
3300026866\|Ga0207786_102536	All Organisms → cellular organisms → Bacteria → Proteobacteria	1718	Open in IMG/M
3300026871\|Ga0207825_104398	Not Available	1150	Open in IMG/M
3300026879\|Ga0207763_1012419	Not Available	877	Open in IMG/M
3300026887\|Ga0207805_1005430	Not Available	1417	Open in IMG/M
3300026900\|Ga0207444_1002799	Not Available	1271	Open in IMG/M
3300026934\|Ga0207816_1026056	Not Available	717	Open in IMG/M
3300026953\|Ga0207835_1004949	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300026979\|Ga0207817_1001816	Not Available	2618	Open in IMG/M
3300027042\|Ga0207766_1029766	Not Available	613	Open in IMG/M
3300027330\|Ga0207777_1002544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4651	Open in IMG/M
3300027440\|Ga0207571_101325	Not Available	594	Open in IMG/M
3300027516\|Ga0207761_1028129	Not Available	1113	Open in IMG/M
3300027703\|Ga0207862_1045305	Not Available	1325	Open in IMG/M
3300027854\|Ga0209517_10299364	Not Available	941	Open in IMG/M
3300027854\|Ga0209517_10646641	Not Available	552	Open in IMG/M
3300027910\|Ga0209583_10783607	Not Available	506	Open in IMG/M
3300027911\|Ga0209698_11197341	Not Available	560	Open in IMG/M
3300028379\|Ga0268266_10673181	Not Available	997	Open in IMG/M
3300031170\|Ga0307498_10349185	Not Available	568	Open in IMG/M
3300031226\|Ga0307497_10293193	Not Available	743	Open in IMG/M
3300031226\|Ga0307497_10446745	Not Available	628	Open in IMG/M
3300031231\|Ga0170824_114407420	Not Available	915	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1131756	Not Available	618	Open in IMG/M
3300031446\|Ga0170820_11591215	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300031446\|Ga0170820_14925809	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2379	Open in IMG/M
3300031446\|Ga0170820_16417630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1535	Open in IMG/M
3300031474\|Ga0170818_103392005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2979	Open in IMG/M
3300031544\|Ga0318534_10223013	Not Available	1088	Open in IMG/M
3300031713\|Ga0318496_10235365	Not Available	1009	Open in IMG/M
3300031719\|Ga0306917_10384295	Not Available	1095	Open in IMG/M
3300031751\|Ga0318494_10696220	Not Available	595	Open in IMG/M
3300031764\|Ga0318535_10141535	Not Available	1070	Open in IMG/M
3300031833\|Ga0310917_11210990	Not Available	502	Open in IMG/M
3300031893\|Ga0318536_10094851	Not Available	1491	Open in IMG/M
3300031946\|Ga0310910_11530079	Not Available	511	Open in IMG/M
3300031947\|Ga0310909_10360655	Not Available	1220	Open in IMG/M
3300032160\|Ga0311301_10741869	Not Available	1367	Open in IMG/M
3300032160\|Ga0311301_11063585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1059	Open in IMG/M
3300032160\|Ga0311301_11837101	Not Available	719	Open in IMG/M
3300032770\|Ga0335085_10607970	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300032770\|Ga0335085_12059532	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300032805\|Ga0335078_12052385	Not Available	610	Open in IMG/M
3300032828\|Ga0335080_11687534	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032892\|Ga0335081_10019496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10971	Open in IMG/M
3300032892\|Ga0335081_11163056	Not Available	883	Open in IMG/M
3300032897\|Ga0335071_10849263	Not Available	861	Open in IMG/M
3300032954\|Ga0335083_10001132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37441	Open in IMG/M
3300033433\|Ga0326726_10107466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2505	Open in IMG/M
3300033433\|Ga0326726_11619151	Not Available	630	Open in IMG/M
3300034090\|Ga0326723_0001012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10454	Open in IMG/M
3300034090\|Ga0326723_0113516	Not Available	1176	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.54%
Host-Associated	Host-Associated	4.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.79%
Aquatic	Environmental → Aquatic	26.75%
Plants	Host-Associated → Plants	4.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.24%
Freshwater	Environmental → Aquatic → Freshwater	17.83%
Sediment	Environmental → Aquatic → Sediment	8.28%
Peat	Environmental → Terrestrial → Peat	2.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.91%
Marine	Environmental → Aquatic → Marine	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.38%
Loam	Environmental → Terrestrial → Soil → Loam	12.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.27%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.64%
Sand	Environmental → Terrestrial → Soil → Sand	0.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.19%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.55%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.27%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.64%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.10%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.18%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.18%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.55%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.27%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.27%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.27%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.27%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.64%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.64%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.64%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.64%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.64%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000729	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35	Environmental	Open in IMG/M
3300000731	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34	Environmental	Open in IMG/M
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300001414	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026271	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026828	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-12 (SPAdes)	Environmental	Open in IMG/M
3300026835	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes)	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026866	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76 (SPAdes)	Environmental	Open in IMG/M
3300026871	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes)	Environmental	Open in IMG/M
3300026879	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes)	Environmental	Open in IMG/M
3300026887	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)	Environmental	Open in IMG/M
3300026900	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K4-12 (SPAdes)	Environmental	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300026953	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 8 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027440	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
beta3_all_00913450	2124908028	Soil	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEGFQPRR
A5_c1_00348840	2124908044	Soil	MAAAEQPKYEPGHVIDRFCCGEPMKLIKSIPRIGPYPELQTYRCERCHNVETIEVGTERFQPRR
deepsgr_02238630	2199352025	Soil	MTAGDEPKYEPGHPIARFCCGELMRLVKTIPRIGSYPELQTYRCERCHNVETIEVKDRRFQVRRHP
JGI12371J11900_10035132	3300000729	Tropical Forest Soil	MTISEQPKYEPGRPIARFCCGEPMRLIKVVPRIGSYPELQTYRCNRCHNVETIEMKWEGSQPRRLS*
JGI12381J11899_10009302	3300000731	Tropical Forest Soil	MSSTDQSKYEPGHPIARFCCGQPMKLIKTIPRIGSYPELQTYLCEQCHNRETIEINWERFQPREKSP*
JGI20193J14888_10286682	3300001385	Arctic Peat Soil	MVIAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIELKMEPFQPRR*
JGI20174J14864_10002462	3300001414	Arctic Peat Soil	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNAETIEVKMEGFQPRR*
JGI24130J36418_100687561	3300002549	Arctic Peat Soil	AEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIELKMEPFQPRR*
soilH2_102787135	3300003324	Sugarcane Root And Bulk Soil	MSGSENITYEPGHPIARYCCGEPMKLVKIIPRIGSYPELQSYRCQRCHNVETIEVK*
Ga0062387_1013189122	3300004091	Bog Forest Soil	MAADEQPKYEPGHPSTRFCCGERMKLVKFIPRIGSYPELQTYQCDQCHNVETIEVEWGRIQPRRLS*
Ga0062389_1024890161	3300004092	Bog Forest Soil	MTAIKQFKYEPGRPIARFCCGEPMKLVKTVPRIGSYPELQTYRCEKCHNVENIEVK
Ga0066816_10189562	3300005158	Soil	MAAAEQHRYEPGRSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT*
Ga0066814_100041412	3300005162	Soil	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCGRCHNVETIEVT*
Ga0066815_100870741	3300005164	Soil	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT*
Ga0068861_1004818623	3300005719	Switchgrass Rhizosphere	RYEPRHPITRSCCVESMKLVNAIPRIGPYPELQTYRCERCHNVETIEVT*
Ga0066903_1000797104	3300005764	Tropical Forest Soil	MAAGDEPKYEPGHPIARFCCGEPMKLLKTIPRIGSYPELQTYRCERCHNVETIEVKDRRFQARRHP*
Ga0066903_1025237662	3300005764	Tropical Forest Soil	MTAGDEPKYEPGRPIARFCCGELMKLVKTIPRIGSYPELQTYRCEGCHNVETIETKDRRFRARRHP*
Ga0066795_100521004	3300005938	Soil	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEGFQPRR*
Ga0066795_102286712	3300005938	Soil	MAAAEQPKYEPGHVIERFCCGEPMKLIKAIPRIGSYPEIQTYRCQRCHNIETVELKTEGFQPRR*
Ga0066790_101863092	3300005995	Soil	MAAAEQPKYEPGHVIDRFCCGEPMKLVKSIPRIGPYPELQTYRCERCHNVETIEVGTERFQPRR*
Ga0075023_1000766302	3300006041	Watersheds	MTAAEQSRYEPEHPIARFCCGELMKLVKTVPRISSYPELQTYRCEQCHNVETIEVK*
Ga0075028_1004550351	3300006050	Watersheds	MAAAEQIKNQPGYPIARFCCGEPMNLVKTIPRIGSYPELQTYRCERCHNVETIEVK*
Ga0075029_1007125871	3300006052	Watersheds	MGDQAKYEPGRPIQRLCCGEQMKLVKVIPRIGHYPELQTYQCDQCHNVETIEVEWELYPRRLP*
Ga0097691_10189954	3300006055	Arctic Peat Soil	MVIAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEGFQPRR*
Ga0075017_1002545183	3300006059	Watersheds	MAAAEQSKYQPGHPIARFCCGEPMNLVKTIPRIGSYRELQTYRCERCHNVETIEVK*
Ga0075017_1002868791	3300006059	Watersheds	MTAGEQPRYKPGHHVTRYCCGEPMKLVKTIPRIGSYSELQTYRCEKCHNVETIEVK*
Ga0075017_1009508391	3300006059	Watersheds	SSMAIIEQSRYEPGRPIARFCCGESMKLVKMIPRIGSYPELQTYRCEKCHHVETIEMK*
Ga0075015_1001427874	3300006102	Watersheds	MTAAEQLRYEPGHPIARFCCGEPMKLVKTIPRIGSYPELQTYRCEQCHNIETIEVKWSNSVQNKGARQ*
Ga0075018_100735953	3300006172	Watersheds	MTAAEQSRYEPEHPIARFCCGELMKLVKTVPRIGSYPELQTYRCEQCHNVETIEVK*
Ga0075014_1001967232	3300006174	Watersheds	MAAAEQSKYQPGHPTARFCCGEPMNLVKTIPRIGSYRELQTYRCERCHNVETIEVK*
Ga0075014_1008232271	3300006174	Watersheds	MGAAEQPKYEPGRVIARFCCGEPMELITVIPRIGPNPEIQTYRCKRCHNVETIEV
Ga0066797_11306183	3300006864	Soil	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEVFSQGGSYDNAAQ*
Ga0104326_1237042	3300007740	Soil	MSANEQPKYEPGHPIAHFCCGEPMKLVKTIPRIGFYPELQTYRCERCHNVETIEMKT*
Ga0105247_113951392	3300009101	Switchgrass Rhizosphere	MTAAEQHRYEPGHPIARFCCGELMKLIKTIPCIGSYPELQTYRCEQCHNVETIEVK*
Ga0118657_1002471916	3300009506	Mangrove Sediment	MAEEPKYEPGRPQERFCCGERMKLVNFVPRIGAYPELQTYQCGKCHNAETIEVEWKGFFPKKTS*
Ga0116118_11308481	3300009637	Peatland	MAAAEQPKYEPGRVIARFCCGEPMKLIAVIPRIGPNPEIQSYRCKRCHNVETIEVESERFQPRR*
Ga0116134_12348111	3300009764	Peatland	AEQPKYEPGHAFERLCCGERMKLIKSIPRIGSYPELQTYRCERCHNVETIEVEWEHFHLGRWL*
Ga0126374_111357802	3300009792	Tropical Forest Soil	MTAGDEPKYEPGRPIARFCCGELIKLVKTIPRIGSYPELQTYRCERCHNVETIEVKDRRFQARRPP*
Ga0116223_102891642	3300009839	Peatlands Soil	MAAAEEPKYEPGRPIARFCCDEPMKLIKVIPRIGSYPEQQTYRCERCHNVETIEVETERFQPRR*
Ga0116223_103657611	3300009839	Peatlands Soil	MAFAEQPKYEPGHVIERFCCGEPMRLIKVIPRIGSYPELQTYRCERCHNVENIEVKMEGF
Ga0074045_101306922	3300010341	Bog Forest Soil	MAAAEQPKYEPGHAFERLCCGEPMKLIKSIPRIGSYPELQTYRCERCHNVETIEVEWEHFHLGRWL*
Ga0074044_103436802	3300010343	Bog Forest Soil	MTTIEQPKYEPGHVIERFCCGEPMKLIQTIPQIASYPEIQTYRCERCHNVETIELKMDGFPSYLF*
Ga0126370_115578861	3300010358	Tropical Forest Soil	MPAGDEPKYEPGHPIARFCCGELMKLVKTIPRIGSYPELQTYRCEGCHNVETIEV
Ga0136449_1018054841	3300010379	Peatlands Soil	EPGHVIARFCCGEPMKLIKAIPRIGFYPAQQTYRCERCHDVETIEAKTERFQPRRSL*
Ga0136449_1021817962	3300010379	Peatlands Soil	MAAAEQPNYEPGHVIARFCCGDPMKLIKAIPRIGSYPEIQTYRCERCHNIETVELKTEGFQPRR*
Ga0120118_11637111	3300012010	Permafrost	MAAAEQPKYEPGHPIARFCCGEQMRLIKTIPRIGGYRELQTYRCERCHNVETIEVERERFQPRRLS*
Ga0120139_10011459	3300012019	Permafrost	MTSEQPQYEPGRPIARFCCGEQMRLIKTIPRIGGYRELQTYRCERCHNVETIELNEDHFNPRRNHHGDRK*
Ga0120139_10350691	3300012019	Permafrost	MTAAEQPKYEPGHPIARFCCGEPMKLIKTIPRIGFYPELQTYRCERCHNVETIEVERERFQPRRLS*
Ga0157300_11157221	3300012884	Soil	RYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT*
Ga0153915_121356342	3300012931	Freshwater Wetlands	EPGLVIARFCCGKHMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKWEQFKSRRNLHGNGN*
Ga0126369_117020171	3300012971	Tropical Forest Soil	MAAGDEPKYEPGHPIARFCCGEPMKLLKTIPRIGSYSELQTYRCERCHNVETIEVKDRRFQARRHP*
Ga0120123_11389532	3300013770	Permafrost	MTSEQPQYEPGRPIARFCCGEQMRLIKTIPRIGGYRELQTYRCERCHNVETIELNDNHFNPRRNHHGDRN*
Ga0120158_100267006	3300013772	Permafrost	MAAAEQPKYEPGHPIARFCCGEPMKLIRAIPRIGPYPEQQTYRCERCHNVETIEVERERFQPRRLS*
Ga0120158_104367382	3300013772	Permafrost	QPKYEPGHPIARFCCGEPMKLIKTIPRIGFYPELQTYHCDRCPNVETIEVERERFQPRRLS*
Ga0120125_10263252	3300014056	Permafrost	MAAAEQPKYEPGHPIARFCCSEPMKLIKTIPRIGFYPELQTYRCERCHNVETIEVERERFQPRRLS*
Ga0120125_10999092	3300014056	Permafrost	MTSEQPQYEPGRPIARFCCGEQMRLIKIIPRIGGYPELQTYRCERCHNVETIELNEDHFNPRRNHHGDRK*
Ga0120149_12478191	3300014058	Permafrost	MAAAEQPKYEPGHPIARFCCGEPMKLIRAIPRIGAYPEQQTYRCERCHNVETIEVERERFQPRRLS*
Ga0181518_103312761	3300014156	Bog	MAAAEQPKYEPGHVIERFCCGEPMRLIKVIPRIGSYPELQTYRCERCHNVET
Ga0181530_101924692	3300014159	Bog	MAAAEQPKYEPGHVIARFCCGEPMKLIKAIPRIGSYPEQQTYRCERCHNVETIELKIDGFPSYLF*
Ga0181532_102371842	3300014164	Bog	AAAEEPKYEPGRPITRFCCGEPMKLITVIPRIGPNPEIQTYRCKRCQNVETIEVETERFQPRR*
Ga0181532_105019082	3300014164	Bog	MTTIEQPKYEPGHVVERLCCGEPMKLIKSLPRIGSYPELQTYRCERCHNVETIELKMDGFPSYLF*
Ga0182024_101620302	3300014501	Permafrost	MTAAAQPKYEPGRPIARFCCGEQMKLVKTIPRIGSYPELQTYRCEQCCNVETIEVK*
Ga0181536_100144332	3300014638	Bog	MAAAEEPKYEPGHPIARFCCGEPMKLIKVIPRIGFYPEIQTYRCQRCHNIETVELK*
Ga0181536_100634773	3300014638	Bog	MAAAEQPKYEPGHVIARFCCGEPMKLIKAIPRIGSYPEQQTYRCERCHNVETVEVKTERYQPRRSL*
Ga0181536_101005902	3300014638	Bog	MAAAEQPKYEPGHVIERFCCGEPMRLIKVIPRIGSYPELQTYRCERCHNVETIEVKTERFQPRRQL*
Ga0181536_104901681	3300014638	Bog	MGGVEQPKYEPGHVIARFCCGEPMKLITVIPRIGPNPEIQTYRCKRCHNVETIEVE
Ga0132258_129921522	3300015371	Arabidopsis Rhizosphere	MTAAEQQYEPGHPIARFCCGEPMKLIKTIPRIGSYPELQTYRCEKCHNVETIEVK*
Ga0132256_1027040662	3300015372	Arabidopsis Rhizosphere	MTAAEQPRYEPGHPIARFCCGEPMRLIKVVPRIGSYPELQTYRCEQCHNVENIE
Ga0132255_1000718467	3300015374	Arabidopsis Rhizosphere	LKVCVTLVLLHSMTAAEQHRYEPGHPIARFCCGELMKLIKTIPCIGSYPELQTYRCEQCHNVETIEVK*
Ga0182036_101381241	3300016270	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETIEVEWEGFQPRRLS
Ga0182039_101290873	3300016422	Soil	MADVEQPRYEPGRPIARFRCGEHMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0181505_111293492	3300016750	Peatland	AEQPKYEPGHAFERLCCGEPMKLIKSIPRIGSYPELQTYRCERCHNVETIEVEWEHFHLGRWL
Ga0181505_111313943	3300016750	Peatland	AEQPKYEPGHVIERLCCGEPMKLIKSIPRIGSYPELQTYRCERCHNVETIEVEWECFQPRRHL
Ga0187825_101364041	3300017930	Freshwater Sediment	MAAAEQPKYEPGRPIVRFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKWEQFKSRRNLHGNGNSK
Ga0187825_102366722	3300017930	Freshwater Sediment	MAQEAKYEPGHPIQRLCCGEQMKLVKVIPRIGHYPELQTYQCDQCHNIETIEVEWELYPRRLP
Ga0187825_102819261	3300017930	Freshwater Sediment	MASEQPKYEPGRPIARFCCDQPMKLIKTIPRIGGYPELQTYRCERCHNVETIELKEDHYNPRRN
Ga0187803_100315782	3300017934	Freshwater Sediment	VYIRNWHVRLWSYLHGMAAAEQSKYQPGHPIARFCCGEPMKLVKTIPRIGSYPELQTYRCERCHNVETIEVK
Ga0187821_101445601	3300017936	Freshwater Sediment	MGDQAKYEPGRPIQRLCCGEQMKLVKVIPRIGGYPELQTYQCDQCHNVETIEVEWELYPRRLP
Ga0187775_104115432	3300017939	Tropical Peatland	RLKSCFCPMSAAEQSKYEPGHPVARFCCGEPMKLVKMTPRIGTYPELQTCRCEECHNVETIEVKQTANLGS
Ga0187853_103177901	3300017940	Peatland	MAAAEQPKYEPGHAFERLCCGEPMKLIKSIPRIGSYPELQTYRCERCHNVETIEVEWEHFHLGRWL
Ga0187778_111596831	3300017961	Tropical Peatland	MAAADQPQYEPGHVIARFCCGEPMKLIKTIPRIGSYPELQTYRCERCHNLETVEVKTEGFQPRRSL
Ga0187777_104037431	3300017974	Tropical Peatland	SAGMAAADQPQYEPGHVIARFCCGEPMKLIKTIPRIGSYPELQTYRCERCHNLEMIEVKTEGFQPRRSL
Ga0187823_103891241	3300017993	Freshwater Sediment	MGDQAKYEPGRPIQRLCCGEQMKLVKVILRIGHYPELQTYQCDQCHNVETIEVEWELYPRRLP
Ga0187815_101253591	3300018001	Freshwater Sediment	MAAAEQSKYQPGHPIARFCCGEPMKLVKTIPRIGSYPELQTYRCERCHNVETIEVK
Ga0187888_13093821	3300018008	Peatland	MAAAEQPKYEPGHVIARFCCGEPRKLIKAIPRIGFYPEQQTYRCERCHNVETIEVKTERFQPRRQL
Ga0187860_11170892	3300018014	Peatland	MAAAEQPKYEPGRVIARFCCGEPMKLIAVIPRIGPNPEIQSYRCKRCHNVETIEVETERFQPRR
Ga0187867_102519041	3300018033	Peatland	MTTIEQPKYEPGHVIERFCCGEPMKLIKAIPQIASYPEIQTYRCERCHNVETIELKMDGFPSYLF
Ga0187855_101463733	3300018038	Peatland	MAAAEQPKYEPGHAFERLCCGEPMKLIKSIPRIGSYPELQTYRCERCHNVET
Ga0187858_103600853	3300018057	Peatland	FYGMAAAEQPKYEPGHAFERLCCGEPMKLIKSIPRIVSYPELQTYRCERCHNVETIEVEWEHFHLGRWL
Ga0187765_107634002	3300018060	Tropical Peatland	MAAADQPQYEPGHVIARFCCGEPMKLIKTIPRIGSYPELQTYRCERCHNHETIEVKTEGFQPRRSL
Ga0184635_100921633	3300018072	Groundwater Sediment	MTLVLLHGMTAVEQPRYEPGHPIARFCCGELMKLVKTIPRIGSYPELQTYRCEQCHNVETIEVK
Ga0187771_100368182	3300018088	Tropical Peatland	MAAAEQPKYEPGRPITRFCCGEPMMLVKVIPRIGAYPEIQTYHCDRCHNVETVEVEWESFQPGRLS
Ga0173481_106103972	3300019356	Soil	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCGRCHNVETIEVT
Ga0193733_11765111	3300020022	Soil	MTAAEQSRYEPGHPIARFCCGELMKLVKTVPRIGSYPELQTYRCEQCHNVETIEVK
Ga0247786_10103312	3300022883	Soil	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT
Ga0247794_102288231	3300024055	Soil	AAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT
Ga0207926_10235414	3300025619	Arctic Peat Soil	PKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIEVKMEGFQPRR
Ga0208219_10458483	3300025625	Arctic Peat Soil	MAAAEEPKYEPGHPIARFCCGEPMKLIKAIPRIGSYPEIQTYRCQRCHNIETVELKTEGFQPRG
Ga0207658_109598742	3300025986	Switchgrass Rhizosphere	FSTMAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT
Ga0209880_10808891	3300026271	Soil	RGMVIAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNVETIELKMEPFQPRR
Ga0207742_1005234	3300026800	Tropical Forest Soil	MTISEQPKYEPGRPIARFCCGEPMRLIKVVPRIGSYPELQTYRCNRCHNVETIEMKWEGSQPRRLS
Ga0207742_1058121	3300026800	Tropical Forest Soil	MSSTDQSKYEPGHPIARFCCGQPMKLIKTIPRIGSYPELQTYLCEQCHNRETIEINWERFQPREKSP
Ga0207742_1062323	3300026800	Tropical Forest Soil	MADAEQSKYEPGHPVARFCCGEPMKLVKAVPRIGSYPELQTYRCDRCHNVEMVELEWEHFQPRRLS
Ga0207502_1047011	3300026828	Soil	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVKITGS
Ga0207782_1198181	3300026835	Tropical Forest Soil	PGHPIARFCCGQPMKLIKTIPRIGSYPELQTYLCEQCHNRETIEINWERFQPREKSP
Ga0207823_1099262	3300026860	Tropical Forest Soil	MTDAEQSKYEPGRPVARFCCGEPMKLVKAVPRIGSYPELQTYRCDRCHNVEMVELEWEHFQPRRLS
Ga0207786_1025362	3300026866	Tropical Forest Soil	MTDAEQSKYEPGHPVARFCCGEPMKLVKAVPRIGSYPELQTYRCDRCHNVEMVELEWEHFQPRRLS
Ga0207825_1043982	3300026871	Tropical Forest Soil	MADAEQSKYEPGRPVARFCCGEPMKLVKAVPRIGSYPELQTYRCDRCHNVEMVELEWEHFQPRRLS
Ga0207763_10124192	3300026879	Tropical Forest Soil	MAGAEQPKYEPGHPVARFCCREPMKLVKAVPRIGSYPELQTYRCNRCHNVETIEVK
Ga0207805_10054302	3300026887	Tropical Forest Soil	MADAEQSKYEPGHPVARFCCGEPMKLVKAVPRIGSYPELQTYRCDRCHNVETIEVK
Ga0207444_10027991	3300026900	Soil	GRCRRYEPRHPITRSCCVESMKLVNAIPRIGPYPELQTYRCERCHNVETIEVT
Ga0207816_10260561	3300026934	Tropical Forest Soil	YEPGHPIARFCCGQPMKLIKTIPRIGSYPELQTYLCEQCHNRETIEINWERFQPREKSP
Ga0207835_10049493	3300026953	Tropical Forest Soil	MADAEQSKYEPGHPVARFCCGQLMKLVKAVPRIGTYPELQTYRCDQCHNVEMVELEWEHFQPRRLS
Ga0207817_10018165	3300026979	Tropical Forest Soil	MTISEQPKYEPGRPIARFCCGEPMRLIKVVPRIGSYPELQTYRCNRCHNVETIEVK
Ga0207766_10297662	3300027042	Tropical Forest Soil	MSSTDQSKYEPGHPIARFCCGQPMKLIKTIPRIGSYPELQTYLCEQCHNRETI
Ga0207777_10025446	3300027330	Tropical Forest Soil	YYADMAGAEQPKYEPGHPVARFCCREPMKLVKAVPRIGSYPELQTYRCNRCHNVETIEVK
Ga0207571_1013252	3300027440	Soil	QHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVT
Ga0207761_10281291	3300027516	Tropical Forest Soil	MADAEQSKYEPGHPVARFCCGQLMKLVKAVPRIGSYPELQTYRCDQCHNVEVVELEWEHFQPRRLP
Ga0207862_10453052	3300027703	Tropical Forest Soil	MADAEQSKYEPKHPVARFCCGEPMKLVKALPRIGSYPELQTYRCDRCHNVEMVELEWEHFQPRRLS
Ga0209517_102993641	3300027854	Peatlands Soil	MASEQAKYKPGRPIGRDCCDQPMKLIKTIPRIGGYPELQTYRCERCHNVETIELKEHHFNPRRNHHGDRS
Ga0209517_106466411	3300027854	Peatlands Soil	LLSDMAFAEQPKYEPGHVIARFCCGEPIKLINTIPRIGSYPEQQTYRCERCHNVETIEVKTDRFQPRRQL
Ga0209583_107836071	3300027910	Watersheds	MTAAEQLRYEPGHPIARFCCGEPMKLVKTIPRIGSYPELQTYRCEQCHNIETIEVKWSNSVQNKGARQ
Ga0209698_111973411	3300027911	Watersheds	EVAGMTAGEQPRYKPGHHVTRYCCGEPMKLVKTIPRIGSYSELQTYRCEKCHNVETIEVK
Ga0268266_106731812	3300028379	Switchgrass Rhizosphere	MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTDRCERCHNVETIEVT
Ga0307498_103491852	3300031170	Soil	QHRYEPGHPIARFCCGELMKLIKTIPRIGSYPELQTYRCEQCHNVETIEVK
Ga0307497_102931932	3300031226	Soil	LKVCVTLVLLHSMTAAEQHRYEPGHPIARFCCGELMKLIKTIPRIGSYPELQTYRCEQCHNVETIEVK
Ga0307497_104467451	3300031226	Soil	MTAGDEPKYEPGHPIARFCCGELMKLVKTIPHIGSYPELQTYRCERCHNVETIEVKDRRFQVRRHP
Ga0170824_1144074203	3300031231	Forest Soil	MTAAEQHRYEPGHPIARFCCGELMKLIKTIPRIGSYPELQTYRCEQCHNVETIEVK
(restricted) Ga0255312_11317561	3300031248	Sandy Soil	MAAAEQQRYEPGHSVTRFCCGESMKFVKAIPRIGSYPELQTYRCERCHNVETIEVT
Ga0170820_115912155	3300031446	Forest Soil	MTAAEQSRYEPGHPIARFCCGELMKLIKTVPRIGSYPELQTYRCEQCHNVETIEVK
Ga0170820_149258093	3300031446	Forest Soil	MTATEQPRYEPGHLIVRFCCGEPMKLIKTIPCIGAYPELQTYRCEQCHNVETIEMK
Ga0170820_164176302	3300031446	Forest Soil	MTAAEQHRYEPGHPIARFCCGELMKLIKTIPRIGSYPELQTYRCEQCHNVETIGVK
Ga0170818_1033920052	3300031474	Forest Soil	MTATEQPRYEPGHPIVRFCCGEPMKLIKTIPCIGAYPELQTYRCEQCHNVETIEMK
Ga0318534_102230132	3300031544	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0318496_102353651	3300031713	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPGRLS
Ga0306917_103842951	3300031719	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKTIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0318494_106962201	3300031751	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETF
Ga0318535_101415352	3300031764	Soil	GMADVEQPRYEPGRPIARFCCGEQMQLIKTIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0310917_112109901	3300031833	Soil	MADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRL
Ga0318536_100948513	3300031893	Soil	HIDFSLSLGMADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0310910_115300791	3300031946	Soil	GMADVEQPRYEPGRPIARFCCGEQMQLIKSIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRLS
Ga0310909_103606551	3300031947	Soil	PGRPIARFCCGEQMQLIKTIPRIGSYPELQTYHCDRCHNVETFEVEWEGFQPRRPS
Ga0311301_107418694	3300032160	Peatlands Soil	FEPGHVIARFCCGEPMKLIKAIPRIGSYPEQQTYRCERCHNVETIEVKTERFQPRRSL
Ga0311301_110635851	3300032160	Peatlands Soil	MAAAEQPKYEPGHVIARFCCGEPMKLIKAIPRIGSYPEQQTYRCERCHNVETIE
Ga0311301_118371012	3300032160	Peatlands Soil	MAAAEQPNYEPGHVIARFCCGDPMKLIKAIPRIGSYPEIQTYRCERCHNIETIELKMEGFEPRS
Ga0335085_106079702	3300032770	Soil	MEQPKYEPGRVIPRFCCGEPMELVKTVPRIGTYPELQTYRCARCHNVEAIEVKDEQIFPRRSQ
Ga0335085_120595321	3300032770	Soil	MEQPKYEPGRVVPRFCCGEPMELVKTVPRIGTYPELQTYRCARCHNVEAIEVK
Ga0335078_120523854	3300032805	Soil	EPARPVAHLCCGNPMKLVKTIPRIGSYPELQTYRCERCHNVETIEAR
Ga0335080_116875341	3300032828	Soil	MEQPKYEPGRVIPRFCCGEPMELVKTVPRIGTYPELQTYRCARCHNVEAIEVKDEQFFSR
Ga0335081_1001949621	3300032892	Soil	MAAAEQSKYQPGHPIARFCCGDAMKLVKTIPRIGSYPELQTYRCERCHNVETVEVK
Ga0335081_111630561	3300032892	Soil	MTAAAQPKYEPGRPIARFCCGEQMKLVKTIPRIGRYPEQQTYRCERCRNVETIEVKGLKQ
Ga0335071_108492631	3300032897	Soil	TAEQPRYEPGHPIARFCCGEPMKLVKTIPRIGNYPELQTYRCEQCHNVETIEVKWSDNVQNKGDRQ
Ga0335083_100011325	3300032954	Soil	MEQPKYEPGRVVPRFCCGEPMELVKTVPRIGTYPELQTYRCARCHNVEAIEVKDEQFFSRRSQ
Ga0326726_101074663	3300033433	Peat Soil	MTAAEQPRYEPGHPIARFCCGGPMKLIKTIPRMGFYPELRTYRCEQCHNVETIEVKSRRR
Ga0326726_116191512	3300033433	Peat Soil	MTAGDEPKYESGHPIARFCCGELMKLVKTIPRIGSYPELQTYRCERCHNVETIEVKDRRFQARRHP
Ga0326723_0001012_6761_6931	3300034090	Peat Soil	MTAAEQPRYEPGRPIARFCCGEPVRLIKTVPRIGSYPELQTYRCAQCHKVETIEVK
Ga0326723_0113516_677_847	3300034090	Peat Soil	MTAAEQPRYEPGHPIARFCCGGPMKLIKTIPRMGFYPELRTYRCEQCHNVETIEVN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters