Metagenome / Metatranscriptome Family F044116

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044116
Family Type	Metagenome / Metatranscriptome
Number of Sequences	155
Average Sequence Length	57 residues
Representative Sequence	MKTEALRLNVEELEERIAPSIVLTNPGGNEPQGGGANNGQAIDAENPAGHAPPGQNK
Number of Associated Samples	111
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.71 %
% of genes near scaffold ends (potentially truncated)	16.13 %
% of genes from short scaffolds (< 2000 bps)	92.90 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.097 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.387 % of family members)
Environment Ontology (ENVO)	Unclassified (32.258 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.645 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF16576	HlyD_D23	1.97
PF13646	HEAT_2	1.32
PF02163	Peptidase_M50	1.32
PF00027	cNMP_binding	1.32
PF13437	HlyD_3	1.32
PF00196	GerE	0.66
PF05239	PRC	0.66
PF13759	2OG-FeII_Oxy_5	0.66
PF00389	2-Hacid_dh	0.66
PF00111	Fer2	0.66
PF13398	Peptidase_M50B	0.66
PF01258	zf-dskA_traR	0.66
PF02738	MoCoBD_1	0.66
PF13290	CHB_HEX_C_1	0.66
PF01839	FG-GAP	0.66
PF13340	DUF4096	0.66
PF09828	Chrome_Resist	0.66
PF13544	Obsolete Pfam Family	0.66
PF07963	N_methyl	0.66
PF04545	Sigma70_r4	0.66
PF07394	DUF1501	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.10 %
Unclassified	root	N/A	32.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.10 %
Unclassified	root	N/A	32.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.10 %
Unclassified	root	N/A	32.90 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	43.23 %
Unclassified	root	N/A	32.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.29 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	41.94 %
Unclassified	root	N/A	32.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.29 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	1.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	37.42 %
Unclassified	root	N/A	32.90 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.65 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.65 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.77 %
Unclassified	root	N/A	32.90 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.29 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.65 %
Verrucomicrobia bacterium Tous-C9LFEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	0.65 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.65 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.77 %
Unclassified	root	N/A	32.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.29 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.65 %
Rheinheimera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Rheinheimera	0.65 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.65 %
Verrucomicrobia bacterium Tous-C9LFEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.77 %
Unclassified	root	N/A	32.90 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.29 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Rheinheimera nanhaiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Rheinheimera → Rheinheimera nanhaiensis	0.65 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.65 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	0.65 %
Verrucomicrobia bacterium Tous-C9LFEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.77 %
Unclassified	root	N/A	32.90 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.65 %
unclassified Zavarzinella	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella	0.65 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.65 %
Streptomyces davaonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	0.65 %
Rheinheimera nanhaiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Rheinheimera → Rheinheimera nanhaiensis	0.65 %
Verrucomicrobia bacterium Tous-C9LFEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.77 %
Unclassified	root	N/A	32.90 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.29 %
Zavarzinella sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.	0.65 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.65 %
Streptomyces sp. Tu6071	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	0.65 %
Streptomyces davaonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	0.65 %
Rheinheimera nanhaiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Rheinheimera → Rheinheimera nanhaiensis	0.65 %
Verrucomicrobia bacterium Tous-C9LFEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps_contig30719.19698	Not Available	570	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_103698959	Not Available	593	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105629515	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300000559\|F14TC_104079981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	920	Open in IMG/M
3300000559\|F14TC_107982772	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300000789\|JGI1027J11758_12890545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1954	Open in IMG/M
3300000956\|JGI10216J12902_101763952	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300000956\|JGI10216J12902_105291258	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	2853	Open in IMG/M
3300000956\|JGI10216J12902_112870951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1252	Open in IMG/M
3300003319\|soilL2_10273709	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300003321\|soilH1_10134650	All Organisms → cellular organisms → Bacteria → Proteobacteria	4383	Open in IMG/M
3300003321\|soilH1_10294762	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300004157\|Ga0062590_100050908	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300004157\|Ga0062590_101506798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300004463\|Ga0063356_105975550	Not Available	522	Open in IMG/M
3300004479\|Ga0062595_100830132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300004643\|Ga0062591_100296068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1270	Open in IMG/M
3300004798\|Ga0058859_10822442	Not Available	515	Open in IMG/M
3300004798\|Ga0058859_11535259	Not Available	504	Open in IMG/M
3300004798\|Ga0058859_11560634	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300004798\|Ga0058859_11632300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300004798\|Ga0058859_11791866	Not Available	541	Open in IMG/M
3300004801\|Ga0058860_12103770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	520	Open in IMG/M
3300005295\|Ga0065707_10606956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	686	Open in IMG/M
3300005331\|Ga0070670_100684396	Not Available	921	Open in IMG/M
3300005332\|Ga0066388_102881749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	879	Open in IMG/M
3300005332\|Ga0066388_106046330	Not Available	611	Open in IMG/M
3300005332\|Ga0066388_106249588	Not Available	601	Open in IMG/M
3300005332\|Ga0066388_107911712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Rheinheimera → Rheinheimera nanhaiensis	532	Open in IMG/M
3300005364\|Ga0070673_101358571	Not Available	668	Open in IMG/M
3300005365\|Ga0070688_100876556	Not Available	707	Open in IMG/M
3300005434\|Ga0070709_10981176	Not Available	671	Open in IMG/M
3300005466\|Ga0070685_11435499	Not Available	530	Open in IMG/M
3300005544\|Ga0070686_100023499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3684	Open in IMG/M
3300005544\|Ga0070686_101855344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300005598\|Ga0066706_11248721	Not Available	563	Open in IMG/M
3300005615\|Ga0070702_101049878	Not Available	648	Open in IMG/M
3300005617\|Ga0068859_101287347	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005618\|Ga0068864_100471673	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300005719\|Ga0068861_101663229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300005764\|Ga0066903_102185781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1067	Open in IMG/M
3300006046\|Ga0066652_101273247	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300006173\|Ga0070716_100171413	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300006196\|Ga0075422_10363414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300006237\|Ga0097621_100387619	Not Available	1249	Open in IMG/M
3300006844\|Ga0075428_101554666	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300006845\|Ga0075421_100341671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1811	Open in IMG/M
3300006880\|Ga0075429_100257441	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300006894\|Ga0079215_10518991	Not Available	749	Open in IMG/M
3300006894\|Ga0079215_10816615	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300006904\|Ga0075424_100954808	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300006904\|Ga0075424_102671079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300006914\|Ga0075436_101198932	Not Available	573	Open in IMG/M
3300007004\|Ga0079218_12488696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300007004\|Ga0079218_12736527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300007004\|Ga0079218_12736527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300007004\|Ga0079218_13080359	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300007004\|Ga0079218_13253237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550	Open in IMG/M
3300009011\|Ga0105251_10293528	Not Available	736	Open in IMG/M
3300009012\|Ga0066710_101484511	Not Available	1047	Open in IMG/M
3300009012\|Ga0066710_101726108	Not Available	951	Open in IMG/M
3300009137\|Ga0066709_100470566	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300009143\|Ga0099792_10742324	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300009143\|Ga0099792_10829358	Not Available	608	Open in IMG/M
3300009156\|Ga0111538_10547003	Not Available	1468	Open in IMG/M
3300009156\|Ga0111538_13089969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	581	Open in IMG/M
3300009177\|Ga0105248_12175549	Not Available	631	Open in IMG/M
3300009553\|Ga0105249_10502275	Not Available	1258	Open in IMG/M
3300009553\|Ga0105249_12521421	Not Available	587	Open in IMG/M
3300009789\|Ga0126307_11779822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300010037\|Ga0126304_10169392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1420	Open in IMG/M
3300010044\|Ga0126310_11341116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300010045\|Ga0126311_11529830	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.	560	Open in IMG/M
3300010362\|Ga0126377_11104932	Not Available	862	Open in IMG/M
3300010366\|Ga0126379_10541482	Not Available	1242	Open in IMG/M
3300010366\|Ga0126379_10740908	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300010397\|Ga0134124_10615631	All Organisms → cellular organisms → Bacteria → PVC group	1065	Open in IMG/M
3300010397\|Ga0134124_13014516	Not Available	515	Open in IMG/M
3300010399\|Ga0134127_13190087	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300010401\|Ga0134121_11543294	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300010401\|Ga0134121_12365447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300010403\|Ga0134123_12884710	Not Available	549	Open in IMG/M
3300011443\|Ga0137457_1018120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1811	Open in IMG/M
3300012200\|Ga0137382_11187606	Not Available	542	Open in IMG/M
3300012201\|Ga0137365_10496881	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300012212\|Ga0150985_110723017	Not Available	500	Open in IMG/M
3300012212\|Ga0150985_121215340	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300012469\|Ga0150984_100738405	Not Available	597	Open in IMG/M
3300012469\|Ga0150984_109664436	Not Available	780	Open in IMG/M
3300012917\|Ga0137395_10383756	Not Available	1004	Open in IMG/M
3300012948\|Ga0126375_11921437	Not Available	520	Open in IMG/M
3300013296\|Ga0157374_10851576	Not Available	928	Open in IMG/M
3300013296\|Ga0157374_12232973	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300013296\|Ga0157374_12528319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300013297\|Ga0157378_11450195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300013297\|Ga0157378_13107060	Not Available	515	Open in IMG/M
3300013308\|Ga0157375_10320212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1715	Open in IMG/M
3300014326\|Ga0157380_10430157	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300014326\|Ga0157380_10668590	Not Available	1039	Open in IMG/M
3300014745\|Ga0157377_11421288	Not Available	548	Open in IMG/M
3300018072\|Ga0184635_10086156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1235	Open in IMG/M
3300018073\|Ga0184624_10463772	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300018081\|Ga0184625_10104641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1464	Open in IMG/M
3300018083\|Ga0184628_10277316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	881	Open in IMG/M
3300019208\|Ga0180110_1028789	Not Available	938	Open in IMG/M
3300019229\|Ga0180116_1310782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	964	Open in IMG/M
3300019233\|Ga0184645_1159992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300019255\|Ga0184643_1494163	Not Available	1065	Open in IMG/M
3300019263\|Ga0184647_1285185	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300019263\|Ga0184647_1445921	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300019269\|Ga0184644_1198643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300019789\|Ga0137408_1398505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	1981	Open in IMG/M
3300020005\|Ga0193697_1000071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	38635	Open in IMG/M
3300020005\|Ga0193697_1000071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	38635	Open in IMG/M
3300020016\|Ga0193696_1178121	Not Available	509	Open in IMG/M
3300020065\|Ga0180113_1357669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M
3300020065\|Ga0180113_1357669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	813	Open in IMG/M
3300020081\|Ga0206354_11687487	Not Available	514	Open in IMG/M
3300022195\|Ga0222625_1166864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300024323\|Ga0247666_1048393	Not Available	863	Open in IMG/M
3300025903\|Ga0207680_10114089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1758	Open in IMG/M
3300025930\|Ga0207701_11411954	Not Available	567	Open in IMG/M
3300025936\|Ga0207670_10010642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5308	Open in IMG/M
3300026088\|Ga0207641_11662365	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300026095\|Ga0207676_12313649	Not Available	535	Open in IMG/M
3300027886\|Ga0209486_10833991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300027903\|Ga0209488_10469316	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300027907\|Ga0207428_10073816	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300027909\|Ga0209382_10575938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1229	Open in IMG/M
3300027909\|Ga0209382_10690610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1099	Open in IMG/M
3300028145\|Ga0247663_1009298	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1351	Open in IMG/M
3300030776\|Ga0075396_1937054	Not Available	829	Open in IMG/M
3300030844\|Ga0075377_10835675	Not Available	524	Open in IMG/M
3300030939\|Ga0138303_1460599	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300030993\|Ga0308190_1194264	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300031057\|Ga0170834_105712297	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031058\|Ga0308189_10337896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M
3300031093\|Ga0308197_10091093	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	884	Open in IMG/M
3300031093\|Ga0308197_10298035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300031094\|Ga0308199_1028936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	986	Open in IMG/M
3300031094\|Ga0308199_1045743	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300031114\|Ga0308187_10086962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	945	Open in IMG/M
3300031114\|Ga0308187_10129774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	818	Open in IMG/M
3300031114\|Ga0308187_10258910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300031128\|Ga0170823_12253296	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300031231\|Ga0170824_102224544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300031231\|Ga0170824_102675346	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300031231\|Ga0170824_108167289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300031231\|Ga0170824_108591250	Not Available	565	Open in IMG/M
3300031446\|Ga0170820_11612271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300031469\|Ga0170819_15999217	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300031474\|Ga0170818_102342122	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031548\|Ga0307408_100216708	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1560	Open in IMG/M
3300031716\|Ga0310813_11721921	Not Available	587	Open in IMG/M
3300032074\|Ga0308173_10001789	All Organisms → cellular organisms → Bacteria → Proteobacteria	11033	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.32%
Host-Associated	Host-Associated	29.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.65%
Plants	Host-Associated → Plants	25.81%
Aquatic	Environmental → Aquatic	9.68%
Human	Host-Associated → Human	3.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Freshwater	Environmental → Aquatic → Freshwater	6.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.16%
Sediment	Environmental → Aquatic → Sediment	3.23%
Digestive System	Host-Associated → Human → Digestive System	3.87%
Roots	Host-Associated → Plants → Roots	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.77%
Loam	Environmental → Terrestrial → Soil → Loam	9.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.23%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	3.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.29%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.23%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	3.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	6.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.23%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.87%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	3.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.58%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.58%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.29%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.29%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.29%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030939	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03765280	2199352024	Soil	VKPNPRQISARSNNVNLMNKESIQLNIDELEERIAPSIVLTNPGGNTPNGGGANNGVAIDNENPAGHAPPGQN
INPhiseqgaiiFebDRAFT_1036989591	3300000364	Soil	MKTETLELEAEVLEERIAPSITLQNPGGNEPQGSGANNGQAIENVNPAGHAPPGQNP*
INPhiseqgaiiFebDRAFT_1056295152	3300000364	Soil	MKTEQVQLDIQELEERIAPGIVLQNPAGNTPQGGGANNGQAIENVNPSGYAPPGHNK*
F14TC_1040799812	3300000559	Soil	MKDIELKVEELEERVAPAIVLTHPGGNEPQGXXXXXXKAHDYLNPAGKAPPGWNK*
F14TC_1079827722	3300000559	Soil	VFGSRCTMKSEITLNLEELEERIAPSIVLTNPGGNTPQGSGASNGEAIDYENPAGHAPGGWNK*
JGI1027J11758_128905452	3300000789	Soil	LKAERTETLLSVEELEERIAPSIVLVNPGGNQQQGNGAANGVANDYQNPVGHAPPGQN*
JGI10216J12902_1017639521	3300000956	Soil	KKQGENMKDIELKVEELEERVAPTIVLTNPGGNEPQSDSAANGAAIDYENPAGHAPPGWN
JGI10216J12902_1052912583	3300000956	Soil	MEGKMKKIELKVEELEERVAPAIILTNPGGNEPQGSGAENGKAHDYLNPAGHAPRGWNK*
JGI10216J12902_1128709512	3300000956	Soil	VKEPIKLQIEELEERVAPAIVLTNPGGNEPQGNGADNGKAHDYLNPAGHAPRGWNK*
soilL2_102737091	3300003319	Sugarcane Root And Bulk Soil	KLNIEELEERVAPTIVLTNPAGNTPGSDSAANGQAVDYTNPAGHAPSGWNKQD*
soilH1_101346502	3300003321	Sugarcane Root And Bulk Soil	MTNEAIKSLDVEELEERVAPGIVLTNPGGNEPQGNGADNGVANNYLNPAGSAPPGHNK*
soilH1_102947622	3300003321	Sugarcane Root And Bulk Soil	MKNEKIELNVEVLEERIAPSIVLQNPGGNTPQGSGANNGQAIEAVNPAGHAPPGQN*
Ga0062590_1000509082	3300004157	Soil	MKRQGDNMKDIKLNVEELEERVAPTIVLTNPAGNTPQSDSAANGQAVDYTNPAGHAPEGWNKQD*
Ga0062590_1015067982	3300004157	Soil	VEELEERVAPTIVLTNPAGNTPGSDSAANGQAVDYTNPAGHAPSGWNKQD*
Ga0063356_1059755502	3300004463	Arabidopsis Thaliana Rhizosphere	MKTEAISLDVEVLEERIAPAMVLQNPGGNTPQGNGASNGQAMQNVNPAGHAPPGQN*
Ga0062595_1008301321	3300004479	Soil	MKTEALRLNVEELEERIAPSIVLTNPGGNEPQGGGANNGQAIDAENPAGHAPPGQNK*
Ga0062591_1002960682	3300004643	Soil	MKDIKLNVEELEERVAPTIVLTNPAGNTPQSDSAANGQAVDYTNPAGHAPEGWNKQD*
Ga0058859_108224421	3300004798	Host-Associated	MKTQEIQLDIQELEERIAPAIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGQN
Ga0058859_115352592	3300004798	Host-Associated	MKTQEIQLDIQELEERIAPGIVLANPAGNTPQGSGANNGQAIENVNPAGHAPAGQNK
Ga0058859_115606341	3300004798	Host-Associated	MKTELLLNVDELEERIAPGIVLTNPGGNEPQGNGASNGVANDYENPAGHAPGGWNK*
Ga0058859_116323001	3300004798	Host-Associated	MKTEIRLNVEELEERIAPTIVLTNPGGNEPQGKGADNGEAHDYLNPSGKAPGGWNK*
Ga0058859_117918662	3300004798	Host-Associated	MKNETLQLNVEVLEERIAPSIVLQNPAGQTPQGSGANNGQAIENVNPAGHAPPGQN*
Ga0058860_121037701	3300004801	Host-Associated	MKTELLLNVDELEQRIAPSIVLTNPGGNEPQGSGADNGVANDYKNPAGHAPGGWNK*
Ga0065707_106069561	3300005295	Switchgrass Rhizosphere	MTNEILLNVEELEERIAPGIVLTNPGGNEPQGGGADNGAAHDYLNPSGHAPGGWNK*
Ga0070670_1006843962	3300005331	Switchgrass Rhizosphere	MKNETLQLNVEVLEERIAPSIVLQNPGGNTPQGGGANNGQAIEAVNPAGHAPPGQN*
Ga0066388_1028817491	3300005332	Tropical Forest Soil	MKSKAINLDVEELEERIAPSIVLTNPGGNEPQGGGANNGQAIDAENPAGHAPPGQNK*
Ga0066388_1060463301	3300005332	Tropical Forest Soil	MNPEKTELLLDVEVLEQRIAPSIVLTNPAGNHPQGNEADNGVANNFDNPAGHAPPGWN*
Ga0066388_1062495881	3300005332	Tropical Forest Soil	MNKEIKLDVELLEERIAPSIVLQNPGGQTPQGSGANNGQAIENVNPAGHAPPGQNP*
Ga0066388_1079117121	3300005332	Tropical Forest Soil	MKTELVLNVEELEERVSPSILLTNPAGNHPSSDSASNGAAIDYENPAGQAPPGWNK*
Ga0070673_1013585711	3300005364	Switchgrass Rhizosphere	MKNETLQLDVEVLEERIAPSIVLQNPGGQTPQGSGASNGQAIDNVNPAGHAPPGQN*
Ga0070688_1008765561	3300005365	Switchgrass Rhizosphere	MKTELKTELLLGLEELEERVAPSIILTNPAGNTPHGGGASNGEAIDYTNPAGHAPSGWNK
Ga0070709_109811762	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKTEIRLDVEQLEERIAPSITVTNPAGNHPGSDSSANGQAIDFENPAGHAPPGWN*
Ga0070685_114354992	3300005466	Switchgrass Rhizosphere	MKNETIELNVEVLEERIAPSIVLQNPGGNTPQGSNANNGQAIEAVNPAGYAPPGHN*
Ga0070686_1000234993	3300005544	Switchgrass Rhizosphere	MKNETLQLKVEVLEERIAPSIVLQNPGGQTPQGSGANNGQAIDAVNPAGHAPPGQN*
Ga0070686_1018553442	3300005544	Switchgrass Rhizosphere	VEELEERIAPTIVLTNPGGNEPQGKGADNGEAHDYLNPSGKAPGGWNK*
Ga0066706_112487211	3300005598	Soil	MKSNIVLTIEELEQRIAPTIVVTNPAGNHPASDSSANGQAIDFENPAGHAPPGWN*
Ga0070702_1010498782	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MKTEKLELDVEVLEERIAPSITLQNPGGNEPQGSGANNGQAIENVNPAGHAPPGQNP*
Ga0068859_1012873471	3300005617	Switchgrass Rhizosphere	GKRTHKSMKTEKLELDVEVLEERIAPSITLQNPGGNEPQGDAANNGQAIDNVNPSGYAPPGHNK*
Ga0068864_1004716733	3300005618	Switchgrass Rhizosphere	MKTQEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGQNK*
Ga0068861_1016632292	3300005719	Switchgrass Rhizosphere	MKDIKLNVEELEERVAPTIVLTNPAGNTPGSDSAANGQAVDYTNPAGHAPEGWNKQD*
Ga0066903_1021857812	3300005764	Tropical Forest Soil	MNEEIKLDVELLEERIAPSIVLQNPGGQTPQGGGANNGQAIDNVNPAGHAPPGQNP*
Ga0066652_1012732472	3300006046	Soil	MKTEIVLDVEELEQRIAPTIVLTNPGGNEPQGNGANNGQAIDYENPAGNAPGGWNK*
Ga0070716_1001714133	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKTETAIRLEVEQLEERIAPSITVTNPAGNHPGSDSAANGQAVDFENPAGHAPGGWN*
Ga0075422_103634142	3300006196	Populus Rhizosphere	VKDTIKLQVEELEERVAPTIVLTNPGGNTPGSDNAANGQAVDYLNPAGHAPEGHNKQD*
Ga0097621_1003876192	3300006237	Miscanthus Rhizosphere	MQNETLQLNVEVLEDRIAPSIVLQNPGGQTPQGGGASNGQAIDNVNPAGHAPPGQN*
Ga0075428_1015546662	3300006844	Populus Rhizosphere	MTNEILLNVEELEDRIAPGIVLTNPGGNEPQGGGADNGAAHDYLNPSGHAPGGWNK*
Ga0075421_1003416711	3300006845	Populus Rhizosphere	VKEPIKLQIEELEERVAPAIVLTNPGGNEPQGNGADNGKAHDYLNPAGHAPGGWNK*
Ga0075429_1002574412	3300006880	Populus Rhizosphere	VKDTIKLQVEELEERVAPTIVLTNPGGNTPGSDNAANGQAVDYQNPAGHAPAGHNKQD*
Ga0079215_105189912	3300006894	Agricultural Soil	MEARKLQVEVEELEERIAPSITLVNPGGNTPQSDNAANGAPDFENPAGHAPPGQNK*
Ga0079215_108166153	3300006894	Agricultural Soil	MKDHKSIKLQVDELEERIAPTIVLTNPGGNEPQGNGADNGQAHDYLNPAGHAPPGWN*
Ga0075424_1009548082	3300006904	Populus Rhizosphere	MKKEEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGQNK*
Ga0075424_1026710792	3300006904	Populus Rhizosphere	MKDELKLQVEELEERIAPSIVLTNPGGNQPQGSGASNGVANDYQNPAGSAPPGWNK*
Ga0075436_1011989322	3300006914	Populus Rhizosphere	MKKEEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGHNK*
Ga0079218_124886962	3300007004	Agricultural Soil	MKDIELKVEELEERVAPAIVLTNPGGNEPQGIGADNGKAHDYLNPSGKAPPGWNK*
Ga0079218_127365271	3300007004	Agricultural Soil	SIKLQVDELEERIAPTIVLTNPGGNEPQGNGADNGQAHDYLNPAGHAPPGWN*
Ga0079218_127365273	3300007004	Agricultural Soil	MKQITLNIDELEERIAPAIVLTNPAGNTPGSENAANGQAVDYTNP
Ga0079218_130803592	3300007004	Agricultural Soil	MKKQIKLQVDELEERIAPAIVLTNPGGNTPGSDSAANGQAVDYLNPAGHAPEGHNKQD*
Ga0079218_132532371	3300007004	Agricultural Soil	ELTVEELEERIAPTIVLTNPGGNQPQGEGAENGKPIDYKNPAGHAPAGWNK*
Ga0105251_102935282	3300009011	Switchgrass Rhizosphere	MQNETLQLNVEVLEERIAPSIVLQNPGGQTPQGSGASNGEAIDNVNPAGHAPPGQN*
Ga0066710_1014845112	3300009012	Grasslands Soil	MKTEIILNVEELEERVSPSILVTNPAGNHPDSTSAANGVAIDWENPAGQAPPGWNK
Ga0066710_1017261083	3300009012	Grasslands Soil	MKKTIELEVQELEERVAPSIVLTNPAGNEPQSDNAAHGQAVDYENPAGHAPPGQN
Ga0066709_1004705662	3300009137	Grasslands Soil	MKTEIILNVEELEERVSPSILVTNPAGNHPDSTSAANWVAIDWENPAGQAPPGWNK*
Ga0099792_107423242	3300009143	Vadose Zone Soil	MKTEMLLNMEELEERIAPSIVLTNPGGNEPQGNGADNGVANDYQNPSGHAPGGWNK*
Ga0099792_108293581	3300009143	Vadose Zone Soil	MKTEIVLNVEELEERIAPSISLTNPAGNHPAGSDAANGQAIDYENPAGAAPPGWNK*
Ga0111538_105470033	3300009156	Populus Rhizosphere	MKQEIKLQVQELEERIAPTIVLTNPAGNTPGSDSAANGQAVDYTNPAGHAPPGQNPQD*
Ga0111538_130899691	3300009156	Populus Rhizosphere	MLLNVEELEERIAPAIVLTNPGGNHPQGKEADNGVANDYLNPSGHAPSGWNK*
Ga0105248_121755491	3300009177	Switchgrass Rhizosphere	RTAGRNTKTMNTETLVLNAEEFEERIAPSIVLANPAGNTPQGGGANNGQAIENVNPAGHAPAGQNK*
Ga0105249_105022753	3300009553	Switchgrass Rhizosphere	MKTEAISLDVEVLEERIAPAMVLRNPGGNTPQGNGASNGQAMQNVNPAGHAPPGQN*
Ga0105249_125214212	3300009553	Switchgrass Rhizosphere	MKNETLQLDVEVLEERIAPSIVLQNPGGQTPQGSGASNGEAIDNVNPAGHAPPGQN*
Ga0126307_117798222	3300009789	Serpentine Soil	MKDIELKVEELEERVAPAIVLTNPGGNQPQSDSAANGEAIDYLNPAGDAPAGWNK*
Ga0126304_101693923	3300010037	Serpentine Soil	MKYIELKVEELEERVAPAIVLTNPGGNQPQSDSAANGEAIDYLNPAGHAPAGWNK*
Ga0126310_113411162	3300010044	Serpentine Soil	MKHIELKVEELEERVAPTIVLTNPGGNEPQSESANNGQAIEYQNPAGHAPGGWN*
Ga0126311_115298301	3300010045	Serpentine Soil	VEELEGRETPSITLANPAGNEPQGAGANNGVAIVAVNPAGHAPPGQNP*
Ga0126377_111049321	3300010362	Tropical Forest Soil	MNKQNQPMAKPMKTELELKVEELEERIAPAIVLTNPAGNTPQGGGASNGQAVDYTNPARHAPPGWNK*
Ga0126379_105414822	3300010366	Tropical Forest Soil	MNPEKTELLLEVEVLEQRIAPSIVLTNPAGNQPQGGGADNGVANNFDNSAGHAPPGWN*
Ga0126379_107409082	3300010366	Tropical Forest Soil	MNKEIKLDVELLEERIAPSIVLQNPGGQTPQGSDANNGQAIENVNPAGHAPP*
Ga0134124_106156311	3300010397	Terrestrial Soil	MKTRIELTVEELEQRVAPSIVLTNPGGNTPGSDNASNGEAIDYLNPSGHAPAGWNK*
Ga0134124_130145163	3300010397	Terrestrial Soil	MNNELSLHVEELEQRISPSIVVTNPAGNHPSSDSSANGQAVDYENPAG
Ga0134127_131900871	3300010399	Terrestrial Soil	MKKIIELEVQELEERVAPSIVLTNPGGNTPGSDNAANGQAVDYENPAGHAPGGWNKQD*
Ga0134121_115432942	3300010401	Terrestrial Soil	MKDELKLQVEELEERIAPTIVLTNPGGNQPQGSGASNGVANDYQNPAGSAPPGWNK*
Ga0134121_123654471	3300010401	Terrestrial Soil	MKTTTEIRLDVEQLEERIAPSITVTNPAGNHPGSDSSAHGQAIDFENPAGHAPPGWN*
Ga0134123_128847101	3300010403	Terrestrial Soil	MKTETIELNVEVLEERIAPSIVLQNPGGNTPQGSNANNGQAIEAVNPAGYAPPG
Ga0137457_10181202	3300011443	Soil	MKTEIELTVEELEERIAPTIVLTNPGGNQPQGDGAENGKAIDYKNPAGHAPAGWNK*
Ga0137382_111876061	3300012200	Vadose Zone Soil	MKTKTEIRLDVEQLEERIAPSITVTNPAGNHPGSDSSANGQAIDFENPAGHAPPGWN*
Ga0137365_104968812	3300012201	Vadose Zone Soil	ETKTRSMKTEIVLNVEELEQRIAPTIVLTNPGGNEPQGSGANNGQAIDYENPAGNAPGGWNK*
Ga0150985_1107230171	3300012212	Avena Fatua Rhizosphere	MKNETLQLNVEVLEERIAPSIVLQNPGGNTPQGSGANNGQAIEAVNPAGHAPPGQN*
Ga0150985_1212153401	3300012212	Avena Fatua Rhizosphere	MKAEVLLTVEELEERIAPSIVLTNPGGNEPQGSGASNGTAIDYQNPAGHAPSGWNK*
Ga0150984_1007384052	3300012469	Avena Fatua Rhizosphere	MKNRQTEVVENMKTEKLQLDIEELEERVAPGIVLQNPGGNTPQGGGANNGVAIENVNPAGHAPAGQNK*
Ga0150984_1096644362	3300012469	Avena Fatua Rhizosphere	MKNETLELNVEILEERIAPSIVLQNPGGNTPEGNGANNGQAIQAVNPAGHAPPGQN*
Ga0137395_103837561	3300012917	Vadose Zone Soil	MKTETEIRLDVEQLEERIAPSITVTNPAGIHPASDSAANGQAVDFENPAGHAPGGWN*
Ga0126375_119214371	3300012948	Tropical Forest Soil	MNQEIKLDVELLEERIAPSIVLQNPGGQTPQGGGANNGQAIDNVNPAGHAPPGQNP*
Ga0157374_108515761	3300013296	Miscanthus Rhizosphere	MKAGQKNQANSMKTQEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGEAIENVNPAGHAPAGQNK*
Ga0157374_122329731	3300013296	Miscanthus Rhizosphere	VEELEERIAPSIVLTNPGGNEPQGSGASNGVANNYQNPAGSAPPG*
Ga0157374_125283191	3300013296	Miscanthus Rhizosphere	MENRQTEVVVNMKTEKLQLDIEELEERVAPGIVLQNPGGNTPQGGGANNGVAIENVNPAGHAPAGHKK*
Ga0157378_114501952	3300013297	Miscanthus Rhizosphere	MKNETVLALDVESLEERIAPSIVLENPGGNEPHGGGANNGQAIEAVNPAGHAPGGHNP*
Ga0157378_131070601	3300013297	Miscanthus Rhizosphere	MKNEIVLQVEELEQRIAPTILITNPAGNHPSSDSASNGQAIDYENPAGHAPSGWNK*
Ga0157375_103202122	3300013308	Miscanthus Rhizosphere	MKNETLQLNVEVLEERIAPSIVLQNPGGQTPQGSGASNGEAIDNVNPAGHAPPGQN*
Ga0157380_104301573	3300014326	Switchgrass Rhizosphere	IMKTEAISLDVEVLEERIAPAMVLQNPGGNTPQGNGASNGQAMQNVNPAGHAPPGQN*
Ga0157380_106685902	3300014326	Switchgrass Rhizosphere	MKIEAIRLDVEVLEERIAPSIVLCNPGGNTPQGGGANNGQAIQNVNPAGHAPGGHN*
Ga0157377_114212881	3300014745	Miscanthus Rhizosphere	MKTEKLELDVEVLEERIAPSITLQNPGGNEPQGDAANNGQAIDNVNPSGYAPPGHNK*
Ga0184635_100861561	3300018072	Groundwater Sediment	MTNEILLNVDELEERIAPGIVLTNPGGNEPQGGGADNGAAHDYLNPSGHAPAGWNK
Ga0184624_104637721	3300018073	Groundwater Sediment	MKTEIVLEVEELEQRVAPTIVLTNPGGNEPQGSGAVNGEAIDYENPAGH
Ga0184625_101046412	3300018081	Groundwater Sediment	MTNEILLNVEELEERIAPGIVLTNPGGNEPQGGGADNGAAHDYLNPSGHAPAGWNK
Ga0184628_102773161	3300018083	Groundwater Sediment	MKDELNLQVEELEERIAPSIVLTNPGGNEPQGSGASNGVANNYQNPAGSAPPGWNK
Ga0180110_10287893	3300019208	Groundwater Sediment	MKKQMKLQVDELEERIAPAIVLTNPGGNTPSSDSAANGQAVDYLNPAGHAPEGHNKQD
Ga0180116_13107822	3300019229	Groundwater Sediment	MKTELLLNVDELEQRIAPGIVLTNPGGNEPQGSGADNGVANDYKNPAGHAPGGWNK
Ga0184645_11599922	3300019233	Groundwater Sediment	MKDIELKVEELEERVAPTIVLTNPGGNEPQSDSAANGQAIDYENPAGHAPPGWN
Ga0184643_14941632	3300019255	Groundwater Sediment	MKNVKEKEQILLQVEELEQRIAPDITTLNPAGNSPNGNGALNGQAVDDLNPAGHAPEGHNKMD
Ga0184647_12851851	3300019263	Groundwater Sediment	MKDPVTLKVEELEERIAPSIVLTNPGGNEPQGGGASNGVANDYENPAGNAPGGWNK
Ga0184647_14459211	3300019263	Groundwater Sediment	MKDELNLQVEELEERIAPSIVLTNPGGNEPQGSGASNGVANDYQNPAGSAPPGWNK
Ga0184644_11986432	3300019269	Groundwater Sediment	MEQEIKLNVEELEERIAPSIVLTNPGGNQPQGSGASNGVANDYQNPAGSAPPGWNK
Ga0137408_13985053	3300019789	Vadose Zone Soil	VEQLEERIAPSITVTNPAGNHPASDSAANGQAVDFENPAGHAPGGWN
Ga0193697_100007124	3300020005	Soil	MKDIKLNVEELEERVAPTIVLTNPAGNTPGSDSAANGQAVDYTNPAGHAPEGWNKQD
Ga0193697_100007125	3300020005	Soil	MKDILLNVEELEERIAPTIVLTNPGGNEPQGNGAANGEAHDYLNPSGHAPPGWN
Ga0193696_11781211	3300020016	Soil	MKTEKLQLDIEELEERVAPGIVLQNPGGNTPQGGGANNGVAIENVNPAGHAPAGHNK
Ga0180113_13576692	3300020065	Groundwater Sediment	MKKQIRLQIDELEERIAPAIVLTNPGGNTPGSDSAANGQAVDYLNPAGHAPEGQNKQD
Ga0180113_13576693	3300020065	Groundwater Sediment	MKQEKTIKLQVEELEERIAPAIVLTNPGGNEPQGSGADNGQAHDYLNPSGHAPPGWN
Ga0206354_116874872	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MDKATKPEVGLEIEQLEERVSPSIVLTNPGGNEPQSSNAANGEAVDYENPAGQAPPGWNK
Ga0222625_11668642	3300022195	Groundwater Sediment	MKEPTILDVEELEERISPSIVLTNPGGNEPQGNGADNGRANEYQNPAGHAPAGQNK
Ga0247666_10483932	3300024323	Soil	MKTKTEIRLEVEQLEERIAPSITVTNPAGNNPQSDSAANGQAVDFENPAGHAPGGWN
Ga0207680_101140892	3300025903	Switchgrass Rhizosphere	MKNETLQLKVEVLEERIAPSIVLQNPGGQTPQGSGANNGQAIDAVNPAGHAPPGQN
Ga0207701_114119541	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTEAISLDVEVLEERIAPSIVLCNPGGNTPQGGGANNGQAIQNVNPAGHAPGGHN
Ga0207670_100106423	3300025936	Switchgrass Rhizosphere	MKTEIRLNVEELEERIAPTIVLTNPGGNEPQGKGADNGEAHDYLNPSGKAPGGWNK
Ga0207641_116623651	3300026088	Switchgrass Rhizosphere	MKTQEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGQNK
Ga0207676_123136491	3300026095	Switchgrass Rhizosphere	QMKAGQKTQVNSMKTQEVQLDIQELEERIAPSIVLQNPGGNTPQGGGANNGQAIENVNPAGHAPAGQNK
Ga0209486_108339911	3300027886	Agricultural Soil	MKDIELKVEELEERVAPAIVLTNPGGNEPQGIGADNGKAHDYLNPSGKAPPGWNK
Ga0209488_104693162	3300027903	Vadose Zone Soil	MKTEMLLNMEELEERIAPSIVLTNPGGNEPQGNGADNGVANDYQNPSGHAPGGWNK
Ga0207428_100738163	3300027907	Populus Rhizosphere	VKDTIKLQVEELEERVAPTIVLTNPGGNTPGSDNAANGQAVDYLNPAGHAPEGHNKQD
Ga0209382_105759381	3300027909	Populus Rhizosphere	MKDQKNITLQVEELEERVAPTIVLTNPGGNTPNSDNAANGQAVDYLNPSGHAPGGWNKGE
Ga0209382_106906103	3300027909	Populus Rhizosphere	VKEPIKLQIEELEERVAPAIVLTNPGGNEPQGNGADNGKAHDYLNPAGHAPGGWNK
Ga0247663_10092982	3300028145	Soil	MKTEQVQLDIQELEERIAPSIVLTNPAGNTPQGSGANNGQAIENTNPSGYAPPGQNKP
Ga0075396_19370543	3300030776	Soil	MKDQITLKVEELEERTVPSIVLTNPGGNEPKGSGASNGVANDYENPAGHAPDGWNK
Ga0075377_108356752	3300030844	Soil	MKEETLQLNVEVLEERIAPSIVLQNPGGNTPQGGGANNGQAIEAVNPAGHAPPGQN
Ga0138303_14605991	3300030939	Soil	MKTELLLNVDELEQRIAPSIVLTNPGGNQPQGNGADNGVANNYENPAGHAPSGWNK
Ga0308190_11942641	3300030993	Soil	MTQEIRLEVEQLEERVMPSIALTNPGGNQPQSSSAANGTAIDYENPAGHAPGGWN
Ga0170834_1057122972	3300031057	Forest Soil	MKTEMLLDVEELEERVAPSIVLTNPGGNQPQGNGAANGVANDYQNPAGSAPPGWNK
Ga0308189_103378962	3300031058	Soil	MKNEKTETQLNVEELEERIAPAIVLTNPGGNEPQGKGASNGVANDYLNPAGSA
Ga0308197_100910932	3300031093	Soil	MKTELLLNVDELEERIAPGIVLTNPGGNEPQGNEADNGVANDYKNPAGHAPGGWNK
Ga0308197_102980352	3300031093	Soil	MKDQITLQVEELEERVAPSIVLTNPGGNQPQGSGASNGVANDYENPAGHAPAGWNK
Ga0308199_10289362	3300031094	Soil	MKDQVTLKVEELEERIAPSIVLTNPGGNQPQGSGASNGVANDYENPAGHAPGGWNK
Ga0308199_10457433	3300031094	Soil	FFRLTKKQKGDSMTQEIRLEVEQLEERVMPSIALTNPGGNQPQSSSAANGTAIDYENPAGHAPGGWN
Ga0308187_100869623	3300031114	Soil	MRAPTILEVEELEERIAPTIILTNPGGNHPQGNGADNGQAQEYQNPAGHAPPGQN
Ga0308187_101297742	3300031114	Soil	MNNEILLTVEELEERIAPSIVLENPAGHEPQGNGANNGQAIEYRNPAGHAPGGWNK
Ga0308187_102589101	3300031114	Soil	MKTEIILNVEELEQRIAPSIVLTNPGGNTPSSDNASNGAAIDYQNPAGHAPPGWN
Ga0170823_122532962	3300031128	Forest Soil	MKTEMLLDVEELEERVAPSIVLTNPGGNEPQGNGAANGVANDYQNPAGSAPPGWNK
Ga0170824_1022245442	3300031231	Forest Soil	MEQEIQLNVEQLEERIAPSIVLTNPGGNQPQGSGASNGVANDYQNPAGSAPPGWNK
Ga0170824_1026753462	3300031231	Forest Soil	MKTELLLNVDELEQRIAPSIVLTNPGGNQPQGSGADNGVANNYDNPAGHAPSGWNK
Ga0170824_1081672891	3300031231	Forest Soil	EILLEVQELEERIAPSIVLTNPGGNQPQGGGASNGTAINYENPAGHAPGGWNP
Ga0170824_1085912502	3300031231	Forest Soil	MQTEVMLNVEELEERIAPSIILTNPGGNAPQGGGADNGQAMSYDNPAGQAPPGQNK
Ga0170820_116122712	3300031446	Forest Soil	MKDQVTLKVEELEERIAPSIVLTNPGGNEPQGNGASNGVANDYQNPAGHAPDGWNK
Ga0170819_159992171	3300031469	Forest Soil	MKTEMSLDVEELEQRIAPSIVLTNPGGNHPQGNGADNGVANDYQNPAGSAPPGWNK
Ga0170818_1023421221	3300031474	Forest Soil	MKTEMLVDLEELEQRIAPSIVLTNPGGNHPQGNGADNGVANDYQNPAGSAPPGWNK
Ga0307408_1002167082	3300031548	Rhizosphere	MDTQKLHVEELEERIAPAIVLVNPGDNTPQGEGANNGQAIEAQNPAGHAPPGQNK
Ga0310813_117219211	3300031716	Soil	MEKKTEIQLEVEQLEERIAPSINLTNPAGNLPQSTSAANGVAIDYENPAGHAPAGWN
Ga0308173_100017892	3300032074	Soil	MNKEVIQLQVEELEERIAPSIVLENPAGNTPQGGGANNGQAIENVNPSGYAPPGQNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044116

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences