Metagenome / Metatranscriptome Family F044164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	155
Average Sequence Length	54 residues
Representative Sequence	MKDITAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR
Number of Associated Samples	120
Number of Associated Scaffolds	155

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.74 %
% of genes near scaffold ends (potentially truncated)	28.39 %
% of genes from short scaffolds (< 2000 bps)	76.13 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.903 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.484 % of family members)
Environment Ontology (ENVO)	Unclassified (23.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.839 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 58.02% β-sheet: 0.00% Coil/Unstructured: 41.98%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 155 Family Scaffolds
PF11752	DUF3309	3.87
PF01833	TIG	3.87
PF00924	MS_channel	3.23
PF09957	VapB_antitoxin	2.58
PF01145	Band_7	2.58
PF03724	META	1.94
PF13439	Glyco_transf_4	1.94
PF02922	CBM_48	1.94
PF13545	HTH_Crp_2	1.94
PF03729	DUF308	1.29
PF04972	BON	1.29
PF02954	HTH_8	1.29
PF01553	Acyltransferase	1.29
PF07883	Cupin_2	1.29
PF06863	DUF1254	1.29
PF07690	MFS_1	1.29
PF00072	Response_reg	0.65
PF02878	PGM_PMM_I	0.65
PF09917	DUF2147	0.65
PF06742	DUF1214	0.65
PF02777	Sod_Fe_C	0.65
PF08085	Entericidin	0.65
PF06577	EipA	0.65
PF02735	Ku	0.65
PF02678	Pirin	0.65
PF02518	HATPase_c	0.65
PF06727	DUF1207	0.65
PF01977	UbiD	0.65
PF04366	Ysc84	0.65
PF01476	LysM	0.65
PF13185	GAF_2	0.65
PF13411	MerR_1	0.65

COG ID	Name	Functional Category	% Frequency in 155 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	3.23
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	3.23
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.94
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.29
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.65
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.65
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.65
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.65
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.65
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.65
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.65
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.65
COG5510	Predicted small secreted protein	Function unknown [S]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
All Organisms	root	All Organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
cellular organisms	root	All Organisms → cellular organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.65 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	11.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.29 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.65 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11.61 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.65 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.65 %
candidate division KSB1	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.03 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.94 %
unclassified candidate division KSB1	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.16 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	3.87 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.94 %
candidate division KSB1 bacterium 4484_219	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium 4484_219	0.65 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.65 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.16 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	3.87 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	1.94 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.65 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.65 %
candidate division KSB1 bacterium 4484_219	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium 4484_219	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.16 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	3.87 %
Desulfobacteraceae bacterium 4484_190.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	1.94 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	0.65 %
unclassified Paenibacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus	0.65 %
candidate division KSB1 bacterium 4484_219	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium 4484_219	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.16 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	3.87 %
Desulfobacteraceae bacterium 4484_190.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	1.94 %
Paenibacillus sp. FSL H7-689	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. FSL H7-689	0.65 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	0.65 %
candidate division KSB1 bacterium 4484_219	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium 4484_219	0.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16635984	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
2170459020\|G1P06HT02HUGNV	Not Available	533	Open in IMG/M
2228664022\|INPgaii200_c0414918	Not Available	522	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100261500	Not Available	629	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101160564	Not Available	544	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101547647	Not Available	629	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1026441	Not Available	636	Open in IMG/M
3300000955\|JGI1027J12803_102032304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	829	Open in IMG/M
3300002099\|JGI24808J26613_1037591	Not Available	676	Open in IMG/M
3300002530\|C687J35503_10196989	Not Available	500	Open in IMG/M
3300003911\|JGI25405J52794_10096017	Not Available	659	Open in IMG/M
3300004062\|Ga0055500_10089897	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300004070\|Ga0055488_10181426	Not Available	562	Open in IMG/M
3300004114\|Ga0062593_102578534	Not Available	577	Open in IMG/M
3300004281\|Ga0066397_10016205	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300004281\|Ga0066397_10046303	Not Available	769	Open in IMG/M
3300004633\|Ga0066395_10161954	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300004633\|Ga0066395_10430140	Not Available	749	Open in IMG/M
3300004643\|Ga0062591_102393902	Not Available	553	Open in IMG/M
3300004782\|Ga0062382_10012983	Not Available	2571	Open in IMG/M
3300005171\|Ga0066677_10288276	Not Available	937	Open in IMG/M
3300005174\|Ga0066680_10561323	Not Available	717	Open in IMG/M
3300005289\|Ga0065704_10121756	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300005289\|Ga0065704_10520216	Not Available	649	Open in IMG/M
3300005294\|Ga0065705_10077645	Not Available	725	Open in IMG/M
3300005295\|Ga0065707_10617520	Not Available	679	Open in IMG/M
3300005364\|Ga0070673_101515435	Not Available	632	Open in IMG/M
3300005439\|Ga0070711_101215800	Not Available	652	Open in IMG/M
3300005445\|Ga0070708_100108890	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	2545	Open in IMG/M
3300005445\|Ga0070708_100123466	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300005447\|Ga0066689_10210096	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	1185	Open in IMG/M
3300005467\|Ga0070706_101588653	Not Available	597	Open in IMG/M
3300005468\|Ga0070707_101793067	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300005526\|Ga0073909_10335549	Not Available	696	Open in IMG/M
3300005555\|Ga0066692_10144458	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.2	1456	Open in IMG/M
3300005559\|Ga0066700_10832018	Not Available	619	Open in IMG/M
3300005713\|Ga0066905_101474912	Not Available	618	Open in IMG/M
3300006049\|Ga0075417_10053786	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300006049\|Ga0075417_10487073	Not Available	618	Open in IMG/M
3300006049\|Ga0075417_10566010	Not Available	576	Open in IMG/M
3300006058\|Ga0075432_10127559	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300006163\|Ga0070715_10875153	Not Available	551	Open in IMG/M
3300006173\|Ga0070716_101369149	Not Available	574	Open in IMG/M
3300006796\|Ga0066665_11435946	Not Available	535	Open in IMG/M
3300006845\|Ga0075421_101712796	Not Available	679	Open in IMG/M
3300006846\|Ga0075430_100491529	Not Available	1013	Open in IMG/M
3300006852\|Ga0075433_10854123	Not Available	794	Open in IMG/M
3300006853\|Ga0075420_100089172	All Organisms → cellular organisms → Bacteria	2725	Open in IMG/M
3300006854\|Ga0075425_100108436	All Organisms → cellular organisms → Bacteria	3164	Open in IMG/M
3300006854\|Ga0075425_100369438	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300006871\|Ga0075434_100344458	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300006903\|Ga0075426_10070020	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
3300007076\|Ga0075435_100269020	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300007076\|Ga0075435_101880063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. FSL H7-689	525	Open in IMG/M
3300009012\|Ga0066710_100722678	Not Available	1520	Open in IMG/M
3300009081\|Ga0105098_10003048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5988	Open in IMG/M
3300009081\|Ga0105098_10021181	All Organisms → cellular organisms → Bacteria → Proteobacteria	2488	Open in IMG/M
3300009088\|Ga0099830_10721483	Not Available	821	Open in IMG/M
3300009089\|Ga0099828_11378894	Not Available	623	Open in IMG/M
3300009100\|Ga0075418_11884249	Not Available	651	Open in IMG/M
3300009131\|Ga0115027_10500607	Not Available	874	Open in IMG/M
3300009147\|Ga0114129_11797459	Not Available	745	Open in IMG/M
3300009147\|Ga0114129_11996625	Not Available	701	Open in IMG/M
3300009147\|Ga0114129_12246474	Not Available	656	Open in IMG/M
3300009147\|Ga0114129_12655501	Not Available	597	Open in IMG/M
3300009157\|Ga0105092_10231415	Not Available	1036	Open in IMG/M
3300009157\|Ga0105092_10343779	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300009157\|Ga0105092_10559298	Not Available	659	Open in IMG/M
3300009157\|Ga0105092_10745795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	571	Open in IMG/M
3300009162\|Ga0075423_10155865	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300009162\|Ga0075423_12750376	Not Available	539	Open in IMG/M
3300009167\|Ga0113563_11765943	Not Available	735	Open in IMG/M
3300009801\|Ga0105056_1030297	Not Available	701	Open in IMG/M
3300009807\|Ga0105061_1006351	Not Available	1426	Open in IMG/M
3300009823\|Ga0105078_1011488	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	955	Open in IMG/M
3300010043\|Ga0126380_11419049	Not Available	611	Open in IMG/M
3300010154\|Ga0127503_11005757	Not Available	712	Open in IMG/M
3300010359\|Ga0126376_10094045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2267	Open in IMG/M
3300010376\|Ga0126381_100406692	All Organisms → cellular organisms → Bacteria → Proteobacteria	1897	Open in IMG/M
3300010398\|Ga0126383_11139141	Not Available	870	Open in IMG/M
3300011120\|Ga0150983_16434980	Not Available	709	Open in IMG/M
3300011271\|Ga0137393_10280592	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300011427\|Ga0137448_1068307	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	925	Open in IMG/M
3300012201\|Ga0137365_10887569	Not Available	651	Open in IMG/M
3300012202\|Ga0137363_10385001	Not Available	1166	Open in IMG/M
3300012208\|Ga0137376_11153962	Not Available	662	Open in IMG/M
3300012209\|Ga0137379_10545070	Not Available	1067	Open in IMG/M
3300012350\|Ga0137372_10074445	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300012511\|Ga0157332_1052139	Not Available	591	Open in IMG/M
3300012532\|Ga0137373_10394276	Not Available	1076	Open in IMG/M
3300012685\|Ga0137397_10363769	Not Available	1078	Open in IMG/M
3300012685\|Ga0137397_10686149	Not Available	761	Open in IMG/M
3300012927\|Ga0137416_10591473	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300012929\|Ga0137404_10063611	All Organisms → cellular organisms → Bacteria	2870	Open in IMG/M
3300012929\|Ga0137404_10605250	Not Available	985	Open in IMG/M
3300012951\|Ga0164300_10237990	Not Available	916	Open in IMG/M
3300012986\|Ga0164304_10394216	Not Available	981	Open in IMG/M
3300012989\|Ga0164305_11581983	Not Available	584	Open in IMG/M
3300014861\|Ga0180061_1050006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	685	Open in IMG/M
3300014875\|Ga0180083_1020054	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300015251\|Ga0180070_1009036	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	1022	Open in IMG/M
3300015258\|Ga0180093_1061886	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	864	Open in IMG/M
3300015371\|Ga0132258_10840883	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300015374\|Ga0132255_104043897	Not Available	622	Open in IMG/M
3300016371\|Ga0182034_11065434	Not Available	700	Open in IMG/M
3300018052\|Ga0184638_1175608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	763	Open in IMG/M
3300018052\|Ga0184638_1262076	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300018053\|Ga0184626_10018623	All Organisms → cellular organisms → Bacteria	2798	Open in IMG/M
3300018054\|Ga0184621_10033493	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300018056\|Ga0184623_10012371	All Organisms → cellular organisms → Bacteria → Proteobacteria	3701	Open in IMG/M
3300018072\|Ga0184635_10035676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	1886	Open in IMG/M
3300018072\|Ga0184635_10051602	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1588	Open in IMG/M
3300018074\|Ga0184640_10101076	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300018074\|Ga0184640_10350240	Not Available	669	Open in IMG/M
3300018081\|Ga0184625_10005707	All Organisms → cellular organisms → Bacteria → Proteobacteria	5574	Open in IMG/M
3300018081\|Ga0184625_10013796	All Organisms → cellular organisms → Bacteria → Proteobacteria	3763	Open in IMG/M
3300020063\|Ga0180118_1355378	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	790	Open in IMG/M
3300020066\|Ga0180108_1087307	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300020186\|Ga0163153_10128290	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300020579\|Ga0210407_10469141	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300021081\|Ga0210379_10413533	Not Available	596	Open in IMG/M
3300021432\|Ga0210384_10709685	Not Available	900	Open in IMG/M
3300027006\|Ga0209896_1004275	Not Available	1433	Open in IMG/M
3300027654\|Ga0209799_1001166	All Organisms → cellular organisms → Bacteria → Proteobacteria	5085	Open in IMG/M
3300027722\|Ga0209819_10004382	All Organisms → cellular organisms → Bacteria	4483	Open in IMG/M
3300027722\|Ga0209819_10021306	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300027722\|Ga0209819_10081958	Not Available	1122	Open in IMG/M
3300027722\|Ga0209819_10197412	Not Available	702	Open in IMG/M
3300027821\|Ga0209811_10380155	Not Available	547	Open in IMG/M
3300027840\|Ga0209683_10505581	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	553	Open in IMG/M
3300027873\|Ga0209814_10000655	All Organisms → cellular organisms → Bacteria	11679	Open in IMG/M
3300027873\|Ga0209814_10017464	All Organisms → cellular organisms → Bacteria	2884	Open in IMG/M
3300027873\|Ga0209814_10018509	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300027874\|Ga0209465_10673232	Not Available	509	Open in IMG/M
3300030606\|Ga0299906_10058390	Not Available	3079	Open in IMG/M
3300031231\|Ga0170824_123086568	Not Available	506	Open in IMG/M
3300031720\|Ga0307469_10004720	All Organisms → cellular organisms → Bacteria → Proteobacteria	5961	Open in IMG/M
3300031720\|Ga0307469_10088084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium 4484_219	2131	Open in IMG/M
3300031720\|Ga0307469_11332895	Not Available	682	Open in IMG/M
3300031740\|Ga0307468_100110856	Not Available	1660	Open in IMG/M
3300031754\|Ga0307475_10135841	Not Available	1945	Open in IMG/M
3300031820\|Ga0307473_10014543	All Organisms → cellular organisms → Bacteria → Proteobacteria	3005	Open in IMG/M
3300031820\|Ga0307473_11083810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300031908\|Ga0310900_10066756	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300031912\|Ga0306921_11478295	Not Available	744	Open in IMG/M
3300031949\|Ga0214473_10244728	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300031949\|Ga0214473_10606262	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	1207	Open in IMG/M
3300031962\|Ga0307479_10067313	All Organisms → cellular organisms → Bacteria	3455	Open in IMG/M
3300031965\|Ga0326597_10029862	All Organisms → cellular organisms → Bacteria	6947	Open in IMG/M
3300032180\|Ga0307471_100045825	All Organisms → cellular organisms → Bacteria → Proteobacteria	3556	Open in IMG/M
3300032180\|Ga0307471_102523932	Not Available	650	Open in IMG/M
3300032770\|Ga0335085_10105918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3624	Open in IMG/M
3300032770\|Ga0335085_10483343	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300034115\|Ga0364945_0003228	All Organisms → cellular organisms → Bacteria	4413	Open in IMG/M
3300034150\|Ga0364933_003680	All Organisms → cellular organisms → Bacteria	3407	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.00%
Host-Associated	Host-Associated	19.35%
Engineered	Engineered	0.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.13%
Aquatic	Environmental → Aquatic	23.87%
Plants	Host-Associated → Plants	19.35%
Solid Waste	Engineered → Solid Waste	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.13%
Freshwater	Environmental → Aquatic → Freshwater	12.26%
Sediment	Environmental → Aquatic → Sediment	10.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.23%
Marine	Environmental → Aquatic → Marine	1.29%
Floodplain	Environmental → Terrestrial → Floodplain	1.29%
Grass	Engineered → Solid Waste → Grass	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.48%
Loam	Environmental → Terrestrial → Soil → Loam	11.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.03%
Sand	Environmental → Terrestrial → Soil → Sand	2.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.29%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.29%
Lake	Environmental → Aquatic → Freshwater → Lake	0.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.65%
Composting	Engineered → Solid Waste → Grass → Composting	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.68%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.52%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.58%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.29%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.29%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.29%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.29%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.29%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.65%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.65%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.52%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.58%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.58%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.94%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.29%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.29%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.29%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.29%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.29%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.29%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.29%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.65%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.65%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.65%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300002530	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014875	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10D	Environmental	Open in IMG/M
3300015251	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03073600	2088090014	Soil	GVFMEDIAAALLVMVLVLYTLVALFSVELNQDSTSSPLVNNEERISELGLRDAFHLYRRR
2NP_01348340	2170459020	Switchgrass, Maize And Mischanthus Litter	MGVFMKDITAVVLATVFVLYSLIVLLSVELNPDNASSPSIHNQERISDVGLRFAFKR
INPgaii200_04149181	2228664022	Soil	MKNITAELLAIVFAVYTLIALLSVEVNQDSTSSQLVSNQERISEL
INPhiseqgaiiFebDRAFT_1002615001	3300000364	Soil	MKDITAVLLATVFVLYSLXIXLSVERYPDSMXSPPASNEERISEVGLRWAFKR*
INPhiseqgaiiFebDRAFT_1011605642	3300000364	Soil	MKNITAELLAIVFAVYTLIALLSVEVNQDSTSSQLVSNQERISELG
INPhiseqgaiiFebDRAFT_1015476472	3300000364	Soil	MKDITPALLTMGFVLYLLIALLSVERNPDSTSSPLVSNQXXISELGLRVAFQR*
KanNP_Total_noBrdU_T14TCDRAFT_10264412	3300000596	Soil	MKDITPALLAIVFVLYSLIALLSVEHNQDSTSLPLVSNQERISELGLRVAFQR*
JGI1027J12803_1020323042	3300000955	Soil	MKDITPALLTMGFVLYLLIALLSVERNPDSTSSPLVSNQEKISELGLRVAFQR*
JGI24808J26613_10375911	3300002099	Soil	MKEITAALLATVFVLYSLIVLLSVELNPDNTSSPSVSNQERISQVGLHIAFQR*
C687J35503_101969891	3300002530	Soil	VFVKDITATLLAIVLVLYALIVLLSVELNPDPTSSPLVSNQERISDVGLRFAFKR*
JGI25405J52794_100960172	3300003911	Tabebuia Heterophylla Rhizosphere	MKDVTAELLAIVFVLYSLIALLSVERNRDSTSSPLIINQERISELGLRVAFQR*
Ga0055500_100898972	3300004062	Natural And Restored Wetlands	MKDFTATLLAIVFVLYALIVLLSVEITPDGTSSLLISNQERISEVGLRFAFKR*
Ga0055488_101814261	3300004070	Natural And Restored Wetlands	MKDIIAILLSVGFVLYSLIALLSVERNQDHASSPPVSNQERISEVGLRVSFQR*
Ga0062593_1025785342	3300004114	Soil	MKDITAVLLAMGFALYSLIALFSVERNRDSASSPLVSNQERNSELGLRVAFQR*
Ga0066397_100162051	3300004281	Tropical Forest Soil	MKDVTAELLAIVFVLYSLIALLSVERNRDSTSSPLIVNQERISELGLRVAFQR*
Ga0066397_100463031	3300004281	Tropical Forest Soil	MKGIIAGLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQETISELGLRVAFQR*
Ga0066395_101619542	3300004633	Tropical Forest Soil	MGVFVKGVIAGLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0066395_104301402	3300004633	Tropical Forest Soil	MKDVTAELLAIVFVLYSLIALLSVERNRDSASSPLIINQERISELGLRVAFQR*
Ga0062591_1023939022	3300004643	Soil	GVFMKDITAVLLAMGFALYSLIALFSVERNRDSASSPLVSNQERNSELGLRVAFQR*
Ga0062382_100129831	3300004782	Wetland Sediment	MAMFMKDIAGTLVAIVFILYSLIVLLSVDLNLDGTSSRLVGNQDKISEIKLRFAFKR*
Ga0066677_102882761	3300005171	Soil	MKDITPALLATLFILYSLIVLLSVELHPDNMSAPFVDNQKISDVGLR
Ga0066680_105613231	3300005174	Soil	MGVFMKDITAALLTMGFVLYLLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0065704_101217563	3300005289	Switchgrass Rhizosphere	MKHMSLFQELLQNIGVFMKDFTAAFLAIVFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0065704_105202161	3300005289	Switchgrass Rhizosphere	MKRMSLFQQLLQNMGVFMKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFRR*
Ga0065705_100776451	3300005294	Switchgrass Rhizosphere	MKDFTVAFLAIVFVLYSLIALLSVDLNQDSTSSPLVSNQERISEL
Ga0065707_106175201	3300005295	Switchgrass Rhizosphere	MKHMSLFQELLQNIGVFMKDFTAALLAISFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0070673_1015154351	3300005364	Switchgrass Rhizosphere	MKDITAVLMAMGFALYSLIALFSVERNRDSASSPLVSNQERNSELGLRVAFQR*
Ga0070711_1012158001	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKDIATALLAIVFVLYSLIALLSAEINQDRTSSPLVINEERISDIGLRFAFKR*
Ga0070708_1001088903	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKDITAALLTMGFVLYLLIALLSVERNPDSTSSPLVSNQEKISELGLRVAFQR*
Ga0070708_1001234663	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKHITAALFAIGFVLYSLIALLSVEHNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0066689_102100961	3300005447	Soil	MKDITAALLTMGFVLYLLIALLSVERNQDSTSSPLVSNQEKISELGLRVAFQR*
Ga0070706_1015886532	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VFMKHITAALFAIGFVLYSLIALLSVEHNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0070707_1017930671	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DITTALLAIVFVLYSLIALLSAEINQDRTSSPLVINEERISDIGLRFAFKR*
Ga0073909_103355492	3300005526	Surface Soil	MKDSAAILLATGFVLYSLIALLSVEHNQDSMSSPSVSNQEKISEAGLRVAFHLYRHR*
Ga0066692_101444582	3300005555	Soil	MKDITAALLMMGFVLYLLIALLSVERNQDSTSSPLVSNQEKISELGLRVAFQR*
Ga0066700_108320182	3300005559	Soil	MGVFMKDITAALLTMGFVLYLLIALLSVERNQDSTSSPLVSNQEKISELGLRVAFQR*
Ga0066905_1014749122	3300005713	Tropical Forest Soil	MKDVTAELLAIVFVLYSLIALLSVERNRDSTSSPLTINQERISELGLRVAFQR*
Ga0075417_100537863	3300006049	Populus Rhizosphere	MKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFRR*
Ga0075417_104870732	3300006049	Populus Rhizosphere	LYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075417_105660101	3300006049	Populus Rhizosphere	FFSSLLQNMGVFMKNITAALLAIGFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075432_101275591	3300006058	Populus Rhizosphere	MKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0070715_108751531	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGVFMKDITAALLTMGFVLYLLIALLSVERNPDSTSSPLVSNQEKISELGLRVAFQR*
Ga0070716_1013691491	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KFCSWAQQNIGVFMKDITAALLATVFVLYSLIVLLSAEPNPDSTSSPLVNNQERISDVGLRFAFKLNRNR*
Ga0066665_114359461	3300006796	Soil	MKDITPALLAIGFVLYSLIALLSVERSQDTTSSPLVSNQERISELGLRVAFQR*
Ga0075421_1017127962	3300006845	Populus Rhizosphere	MKDLTAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075430_1004915291	3300006846	Populus Rhizosphere	MKDITAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075433_108541231	3300006852	Populus Rhizosphere	MKNITAALLAIAFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAF
Ga0075420_1000891721	3300006853	Populus Rhizosphere	IVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075425_1001084362	3300006854	Populus Rhizosphere	MKDITAVVLATVFVLYSLIVLLSVELNPDSASSPLVHNQERISDVGLRFAFKR*
Ga0075425_1003694383	3300006854	Populus Rhizosphere	MGVFMKEITAALLATVFVLYSLIVLISVELNPDSTSSPSVDNQERISDVGLRFAFKR*
Ga0075434_1003444581	3300006871	Populus Rhizosphere	AALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075426_100700201	3300006903	Populus Rhizosphere	MKNITAALLAIAFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075435_1002690202	3300007076	Populus Rhizosphere	MGVFMKDITAVVLATVFVLYSLIVLLSVELNPDSASSPLVHNQERISDVGLRFAFKR*
Ga0075435_1018800631	3300007076	Populus Rhizosphere	MKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR
Ga0066710_1007226781	3300009012	Grasslands Soil	MKDITAALLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISEVGLRVAFQR
Ga0105098_100030484	3300009081	Freshwater Sediment	MFMKDTTAVLYSLIVLLSVELNPHSTISPSVNNQERISDVGLRFAFKR*
Ga0105098_100211812	3300009081	Freshwater Sediment	MKDITAALLAIGFVLYSLIALLSVERNQDSTTSPLVSNQEKVSDLGLRVSFER*
Ga0099830_107214831	3300009088	Vadose Zone Soil	MGVFMKEIMAALLAIVFVLYSLIVLISVEFNPDSTSSPLVDNQERISDVELRFAFKR*
Ga0099828_113788942	3300009089	Vadose Zone Soil	MGVFMKEIMAALLAIVFVLYSLIVLISVEFNLDSTSSPLVDNQERISDVGLRFAFKR*
Ga0075418_118842491	3300009100	Populus Rhizosphere	IPPLQYSSLYIGVFMKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFRR*
Ga0115027_105006071	3300009131	Wetland	MKNITAALLAIVFVLYSLIALLSVERNQESTSSPLVSNQERISELGLRVAFQR*
Ga0114129_117974591	3300009147	Populus Rhizosphere	VLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0114129_119966252	3300009147	Populus Rhizosphere	YSSLYIGVFMKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFRR*
Ga0114129_122464741	3300009147	Populus Rhizosphere	MSLFQQLLQNMGVFMKDFTAALLAIVFVLYSLIALLSVERSQDSTSSPLVSNQERISELGLRVAFQR*
Ga0114129_126555011	3300009147	Populus Rhizosphere	MKDLTAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGL
Ga0105092_102314151	3300009157	Freshwater Sediment	MGVFMKDITATLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVTFQR*
Ga0105092_103437791	3300009157	Freshwater Sediment	MFMKDTTAVLYSLIVLLSVELNPDSTISPSVNNQERISDAGLRFAFKR*
Ga0105092_105592982	3300009157	Freshwater Sediment	MGVFMKDITAALLAIGFVLYSLIALLSVELNQDSTSSPLVSNQERISELGLRVTFQR*
Ga0105092_107457952	3300009157	Freshwater Sediment	MFMKDITAVLYSLIVLLSVELNPDSRSSPSVNNQERISYVGLRFAFKR*
Ga0075423_101558651	3300009162	Populus Rhizosphere	LLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0075423_127503761	3300009162	Populus Rhizosphere	MKNITAALLAIAFVLYSLIALLSVERNQDSTSSPLVSNQERISELG
Ga0113563_117659431	3300009167	Freshwater Wetlands	IVFVFYSLIALLSVERNQDSTSSPLVSNQEKISELGLRVAFQR*
Ga0105056_10302972	3300009801	Groundwater Sand	MKDITAALLAIGFVLYSVIALLSVERNQDSTSSPVVSNQERISELGLRVALQR*
Ga0105061_10063511	3300009807	Groundwater Sand	PFFSSLLQNIGVFMKDITAALLAMGFVLYSVIALLSVERNQDSTSSPVVSNQERISELGLRVALQR*
Ga0105078_10114882	3300009823	Groundwater Sand	KDITAALLAIGFVLYSVIALLSVERNQDSTSSPVVSNQERISELGLRVALQR*
Ga0126380_114190492	3300010043	Tropical Forest Soil	MKDVTAELLAIAFVLYSLIALLSVERNRDSTSSPLIINQQRISELGLRVAFQR*
Ga0127503_110057572	3300010154	Soil	MGGFMKHITAALFAIGFVLYSLIALFSVEHNQDSTSSPLVGNQERISELGLRVAFQR*
Ga0126376_100940454	3300010359	Tropical Forest Soil	MKGIIAGLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0126381_1004066921	3300010376	Tropical Forest Soil	MKDVTAELLAIVFVLYSLIALLSVERNRDSTSSPLIINQERISELGLRVAFQ
Ga0126383_111391411	3300010398	Tropical Forest Soil	MKGIIVGLLAIGFVLYSLIALLSVECNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0150983_164349801	3300011120	Forest Soil	MGVFMKDITAALLAIGFVLYSLIALLSVEHNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0137393_102805922	3300011271	Vadose Zone Soil	MGVFMKEIMAALLAIVFVLYSLIVLISVEFNVDSTSSPLVDNQERISDVGLRFASKR*
Ga0137448_10683072	3300011427	Soil	MGVFMKEITAALLAIVFVLYSLIVLLSVELNPDGTSSPLISNQERISEVGLRFAFKR*
Ga0137365_108875691	3300012201	Vadose Zone Soil	MKDITAALLAIVFVLYSLIALLSLERNQDSTSSPLVRNQERISELGLRV
Ga0137363_103850011	3300012202	Vadose Zone Soil	MKHITAALLAIGFALYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0137376_111539622	3300012208	Vadose Zone Soil	MKDITAALLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISEVGLRVAFQR*
Ga0137379_105450701	3300012209	Vadose Zone Soil	MKDITAALLAIVFVLYSLIALLSLERNQDSTSSPLVSNQERISELGLRVAFQR*
Ga0137372_100744452	3300012350	Vadose Zone Soil	MKDITAALLAIVFVLYSLIALLSVERSQDSTSSPLVSNQERISELGLRVAFQR*
Ga0157332_10521392	3300012511	Soil	MKDVTAEFLAIVFVLYSLIALLSVERNRESTGSPLISNQERISELGLRVAFQR*
Ga0137373_103942762	3300012532	Vadose Zone Soil	MKDITAALLAIVFVLYSLIALLSVDPNQGSTSSPLVSNQERISELGLRVAFQR*
Ga0137397_103637692	3300012685	Vadose Zone Soil	MKDITAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQEKISELGLRVAFQR*
Ga0137397_106861491	3300012685	Vadose Zone Soil	MGVFMKDITAALLAIGFVLYSVIALLSVERNQDSTSSPVVSNQERISEVGLRVAFQR*
Ga0137416_105914732	3300012927	Vadose Zone Soil	MKDITAALLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISEIGLRAAFQR*
Ga0137404_100636112	3300012929	Vadose Zone Soil	MKDITTPLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISEVGLRVAFQR*
Ga0137404_106052501	3300012929	Vadose Zone Soil	QQPLQNMGVFMKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFQR*
Ga0164300_102379901	3300012951	Soil	MKHITAALLAIGFVVYSLIALLSVDLNQDSTSSALVSNQERISELGLRVAFQR*
Ga0164304_103942162	3300012986	Soil	MGVFMKDITAALLAIGFVMYSLIALLSVESNQVSTSSPLVSNQERISELGLRVAFQR*
Ga0164305_115819831	3300012989	Soil	MKDITAALLAMGFVLYLLIALVSVERNRDSTSSPLVNNQEKISELGLRVAFQR*
Ga0180061_10500061	3300014861	Soil	MGVFMKEITAALLAIVFVLYSLIVLLSAELNPDGTSSPVISNQERISEVGLR
Ga0180083_10200543	3300014875	Soil	ALIVLLSVEITPDGTGSPSVSNQERISEVGLRFAFKR*
Ga0180070_10090362	3300015251	Soil	MGVFMKEITAALLAIVFVLYSLIVLLSVEHIPDGTSSPLVSNQERISDVGLRFAFKR*
Ga0180093_10618861	3300015258	Soil	ITAPLLAIAFVLYILIALISVEFNPDSTSSPSVSNQERISDVGLRFAFKR*
Ga0132258_108408834	3300015371	Arabidopsis Rhizosphere	MKDVTAEFLAIVFVLYSLIALLSMERNRDSTSAPLISNQERISELGLRVAFQR*
Ga0132255_1040438972	3300015374	Arabidopsis Rhizosphere	MEVFMNDITAALLAIVLVLYSLVALLSVELHQDSTSSRLVNNEERISELGLRDVFHLYRSR*
Ga0182034_110654342	3300016371	Soil	MKHVTAVLLAIGFALYSLIALLSVERHRDSTSSSLISNQERLSELG
Ga0184638_11756083	3300018052	Groundwater Sediment	LLSRRASESQPVLLVQQNMAVFMKDITAPLLASVFVLYALIILLSVEINPVGTSSPLVSNQERISEVGLRFAFKR
Ga0184638_12620762	3300018052	Groundwater Sediment	SMKDITAPLLAIAFVLYILIALISVEFNPDSTSSAVVSNEERISDVGLRFAFKR
Ga0184626_100186234	3300018053	Groundwater Sediment	MKDITAALLAIGFVLCLLIALLSVERNQNSTSSPLVSNQERISELGLRVAFQR
Ga0184621_100334932	3300018054	Groundwater Sediment	MKDSAAALLATGFVLYSLIALLSVQHNQDSMSSPLVSNQERISEVGLRVAFNLYRHR
Ga0184623_100123712	3300018056	Groundwater Sediment	MKDITVPLLAIAFILYILIALISVEFNPDSKSSPLVSNPERISDVGLRFALNGRR
Ga0184635_100356763	3300018072	Groundwater Sediment	MKDITAALLAIVFVLYSLIALLSVERNQDSTGSPLVSNQERISEVGLRVAFQR
Ga0184635_100516021	3300018072	Groundwater Sediment	MKDITAPLLAIAFVLYILIALISVEFNPDSTSSAVVSNEERISDVGLRFAFKR
Ga0184640_101010761	3300018074	Groundwater Sediment	MKEITAALLATVFVLYASIVLLSVELNPDSTSSPLVNNQERISDVGLRFAFRR
Ga0184640_103502401	3300018074	Groundwater Sediment	MKDITAALLAIVFVLYSLIALLSVERNQDSTSLPLVSNQERISELGLRVAFQR
Ga0184625_100057075	3300018081	Groundwater Sediment	MKDITAPLLAIGLVLYSLTALLSVERNQESTSSPLVSNQERISDLGLRVAFQQ
Ga0184625_100137966	3300018081	Groundwater Sediment	MKDIIAVLLAIGFVLYSLIALFSVERNQDSTGSPLVSNQERISEVGLRVAFQR
Ga0180118_13553781	3300020063	Groundwater Sediment	MPKNLDVFMKDITATLLAIVFAFYALIVLLSVEITPDGTSSPLVSNQERISEVGLRFAFK
Ga0180108_10873072	3300020066	Groundwater Sediment	MKDITAPLLAIAFVLYILIALISVEFNPDSTSSPSVSNQERISDVGLRFAFKR
Ga0163153_101282902	3300020186	Freshwater Microbial Mat	MKENTAVFLATVFALYSLVALLSVERTRESTSSPLVSQARISEVGLRVALHQ
Ga0210407_104691412	3300020579	Soil	MKDITAALLAIGFVMYSLIALLSVERNQVSTSSPLVSNQERISELGL
Ga0210379_104135331	3300021081	Groundwater Sediment	MKGITPALLAIGFVLYSLIALISVELNPDRTSSPLVSNQERISDVGLRFAFKR
Ga0210384_107096852	3300021432	Soil	MGVFMKDITTALLAIVFVLYSLIALLSAEINQDRTSSPLVINEERISDIGLRFAFKR
Ga0209896_10042752	3300027006	Groundwater Sand	MKDITAALLAIGFVLYSVIALLSVERNQDSTSSPVVSNQERISELGLRVALQR
Ga0209799_10011661	3300027654	Tropical Forest Soil	MKGIIAGLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR
Ga0209819_100043821	3300027722	Freshwater Sediment	MKDITAALLAIGFVLYSLIALLSVERNQDSTTSPLVSNQEKVSDLGLRVSFER
Ga0209819_100213062	3300027722	Freshwater Sediment	MQNITAPLLAIFFVLYSLIVLISVELNPDSTSSPLVSNQERISDVGLRFAFKR
Ga0209819_100819581	3300027722	Freshwater Sediment	MKDSTAALLAIGFVLYSLIALLSVERNQHSTSSPLVSNQERISDLGLRVTFQR
Ga0209819_101974121	3300027722	Freshwater Sediment	MKDITATLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVTFQR
Ga0209811_103801552	3300027821	Surface Soil	MKDSAAILLATGFVLYSLIALLSVEHNQDSMSSPSVSNQEKISEAGL
Ga0209683_105055812	3300027840	Wetland Sediment	MAMFMKDIAGTLVAIVFILYSLIVLLSVDLNLDGTSSRLVGNQDKISEIKLRFAFKR
Ga0209814_100006555	3300027873	Populus Rhizosphere	MKDFTAALLAIVFVLYSLIALLSVERNQDSTSSPLVRNQEKISELGLRVAFRR
Ga0209814_100174643	3300027873	Populus Rhizosphere	FFSSLLQNMGVFMKNITAALLAIGFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR
Ga0209814_100185092	3300027873	Populus Rhizosphere	MKDLTAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR
Ga0209465_106732321	3300027874	Tropical Forest Soil	VKGVIAGLLAIGFVLYSLIALLSVERNQDSTSSPLVSNQERISE
Ga0299906_100583901	3300030606	Soil	MKDITAALLVTVFVLYSLIALLSVERNQDSTNSPLVSNQERISDLGLRFAFKR
Ga0170824_1230865681	3300031231	Forest Soil	MKDITAELLAIVFAVYILIALLSVELNQDRTSSPLVSNQERISELGLRG
Ga0307469_100047202	3300031720	Hardwood Forest Soil	MKHMSLFQELLQNIGVFMKDFTAALLAISFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR
Ga0307469_100880842	3300031720	Hardwood Forest Soil	MKDITAVVLATVFVLYSLIVLLSVELNPDSASSPLVHNQERISDVGLRFAFKR
Ga0307469_113328951	3300031720	Hardwood Forest Soil	MKDITTALLAIVFVLYSLIALLSAEINQDRTSSPLVINEERISDIGLRFAFKR
Ga0307468_1001108561	3300031740	Hardwood Forest Soil	MKNITAALLAIVFVLYSLIALLSVERNQDSTSSPLVSNQERISELGLRVAFQR
Ga0307475_101358411	3300031754	Hardwood Forest Soil	MKDITAALLATVFVLYLLIVLLSAEPNPDSTSSPLVNNQERISDVGLRFAFKLNRNR
Ga0307473_100145431	3300031820	Hardwood Forest Soil	MKNITAALLAIGFVLYSLIALLSVDLNQDSTSSPLVSNQERISELGLRVAFQR
Ga0307473_110838101	3300031820	Hardwood Forest Soil	MKNITTALLAMVFVLYSLIALLSVELNQDRTSLPLVINEERISDIGLR
Ga0310900_100667562	3300031908	Soil	MKDSAAILLATGFVLYSLIALLSVEHNQDSMSSPSVSNQEKISEAGLRVAFHLYRHR
Ga0306921_114782951	3300031912	Soil	MKHITAVLLAIGFALYSLITLLSAERNQDSTSSPLISNQARVSELGLRVAFQR
Ga0214473_102447284	3300031949	Soil	VLWVQQNMGVFMKEITAALLAIVFVIYSLIVLLSVEHIPDGTSSPLVSNQERISDVGLRFAFKR
Ga0214473_106062621	3300031949	Soil	MAVFMKDITATLLVIFVLYALIVLLSVEHIPDATSSPLVSNQERISDIGLRFAFER
Ga0307479_100673135	3300031962	Hardwood Forest Soil	MMKDITAELLAIVFAVYILIALLSVELNQDRTSSPLVSNQERISELGLRWAFQR
Ga0326597_100298624	3300031965	Soil	MKEITAALLATVFVLYSLIVLLSVEHIPDGTSSPLVSNQERISDVGLRFAFKR
Ga0307471_1000458253	3300032180	Hardwood Forest Soil	MKNIIAAVLAIGFVLYSLIALLSIERNQDSTSLPLVSNQERISEIGLRVAFQR
Ga0307471_1025239321	3300032180	Hardwood Forest Soil	GFVLYLLIALLSVERNPDSTSSPLVSNQEKISELGLRVAFQR
Ga0335085_101059184	3300032770	Soil	MKKDIRAELLAIIFVVYVLIALLSAELNQDRTSSPLVSNKERIPELVLRGLFQR
Ga0335085_104833432	3300032770	Soil	MKDITAVLLATVFVLYSLIVLLSVELNPDRTSSPLVNNQERISDVGLRFAFKR
Ga0364945_0003228_4283_4411	3300034115	Sediment	VFVLYSLIALLWVELNQDSTGSLLVSNQERISELGLRVAFQR
Ga0364933_003680_3180_3353	3300034150	Sediment	MGVFMKDITAPLLAIGLVLYSLTALLSVERNQESTSSPLVSNQERISDLGLRVAFQQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences