Metagenome / Metatranscriptome Family F046225

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F046225
Family Type	Metagenome / Metatranscriptome
Number of Sequences	151
Average Sequence Length	77 residues
Representative Sequence	MSLLDDAFWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEADPSV
Number of Associated Samples	106
Number of Associated Scaffolds	151

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.42 %
% of genes near scaffold ends (potentially truncated)	28.48 %
% of genes from short scaffolds (< 2000 bps)	78.15 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.225 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (23.179 % of family members)
Environment Ontology (ENVO)	Unclassified (44.371 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.669 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.68% β-sheet: 0.00% Coil/Unstructured: 38.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
a.148.1.1: Arp2/3 complex 21 kDa subunit ARPC3	d1k8ke_	1k8k	0.60283
a.103.1.0: automated matches	d6s6fa_	6s6f	0.59716
e.8.1.3: T7 RNA polymerase	d1mswd_	1msw	0.59694
a.104.1.0: automated matches	d2zbxa1	2zbx	0.5957
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja841	3ja8	0.59066

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 151 Family Scaffolds
PF00903	Glyoxalase	7.28
PF13424	TPR_12	4.64
PF06202	GDE_C	3.97
PF06823	DUF1236	3.97
PF11776	RcnB	3.97
PF07969	Amidohydro_3	3.31
PF00211	Guanylate_cyc	2.65
PF13458	Peripla_BP_6	1.99
PF01734	Patatin	1.99
PF13594	Obsolete Pfam Family	1.99
PF12804	NTP_transf_3	1.99
PF04909	Amidohydro_2	1.99
PF00873	ACR_tran	1.32
PF07944	Glyco_hydro_127	1.32
PF13416	SBP_bac_8	1.32
PF09360	zf-CDGSH	1.32
PF02558	ApbA	1.32
PF13911	AhpC-TSA_2	0.66
PF00891	Methyltransf_2	0.66
PF02775	TPP_enzyme_C	0.66
PF13699	DUF4157	0.66
PF04542	Sigma70_r2	0.66
PF14196	ATC_hydrolase	0.66
PF13620	CarboxypepD_reg	0.66
PF14559	TPR_19	0.66
PF00355	Rieske	0.66
PF05090	VKG_Carbox	0.66
PF13478	XdhC_C	0.66
PF13185	GAF_2	0.66
PF08241	Methyltransf_11	0.66
PF13374	TPR_10	0.66
PF01878	EVE	0.66
PF10604	Polyketide_cyc2	0.66
PF16864	Dimerisation2	0.66
PF02515	CoA_transf_3	0.66
PF07685	GATase_3	0.66
PF07885	Ion_trans_2	0.66

COG ID	Name	Functional Category	% Frequency in 151 Family Scaffolds
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	3.97
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.65
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.99
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.99
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.99
COG3533	Beta-L-arabinofuranosidase, GH127 family	Carbohydrate transport and metabolism [G]	1.32
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.66
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.66
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.66
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	0.66
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.66
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	0.66
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.66

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.23 %
Unclassified	root	N/A	33.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.23 %
Unclassified	root	N/A	33.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.23 %
Unclassified	root	N/A	33.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.26 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	10.60 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	10.60 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.31 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	10.60 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	9.27 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	3.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.66 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.27 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.66 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.27 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Phytomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora	0.66 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.77 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.27 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Phytomonospora endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora → Phytomonospora endophytica	0.66 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig88280	Not Available	633	Open in IMG/M
2170459005\|F1BAP7Q02J5QK6	Not Available	506	Open in IMG/M
3300000443\|F12B_10780708	Not Available	571	Open in IMG/M
3300000550\|F24TB_12627825	Not Available	564	Open in IMG/M
3300000955\|JGI1027J12803_108812321	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1640	Open in IMG/M
3300000956\|JGI10216J12902_101279496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300003994\|Ga0055435_10025524	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300004268\|Ga0066398_10088341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	700	Open in IMG/M
3300004268\|Ga0066398_10176922	Not Available	551	Open in IMG/M
3300004268\|Ga0066398_10189892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	537	Open in IMG/M
3300004633\|Ga0066395_10039941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2016	Open in IMG/M
3300004633\|Ga0066395_10182623	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005180\|Ga0066685_10237191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300005183\|Ga0068993_10175941	Not Available	734	Open in IMG/M
3300005186\|Ga0066676_10463648	Not Available	859	Open in IMG/M
3300005295\|Ga0065707_10540816	Not Available	728	Open in IMG/M
3300005332\|Ga0066388_100008283	All Organisms → cellular organisms → Bacteria → Proteobacteria	7764	Open in IMG/M
3300005332\|Ga0066388_101511002	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1175	Open in IMG/M
3300005332\|Ga0066388_102169862	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300005336\|Ga0070680_101798049	Not Available	531	Open in IMG/M
3300005354\|Ga0070675_101169982	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300005363\|Ga0008090_15004819	Not Available	669	Open in IMG/M
3300005367\|Ga0070667_101765024	Not Available	582	Open in IMG/M
3300005468\|Ga0070707_100920679	Not Available	839	Open in IMG/M
3300005713\|Ga0066905_100085387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2090	Open in IMG/M
3300005713\|Ga0066905_100114522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora → Phytomonospora endophytica	1866	Open in IMG/M
3300005764\|Ga0066903_100370918	All Organisms → cellular organisms → Bacteria → Proteobacteria	2331	Open in IMG/M
3300005764\|Ga0066903_101208519	Not Available	1404	Open in IMG/M
3300005764\|Ga0066903_105247166	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005764\|Ga0066903_105447973	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300005829\|Ga0074479_10753689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2959	Open in IMG/M
3300006852\|Ga0075433_10380175	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300006852\|Ga0075433_11077471	Not Available	699	Open in IMG/M
3300006854\|Ga0075425_100003197	All Organisms → cellular organisms → Bacteria	16610	Open in IMG/M
3300006871\|Ga0075434_100005947	All Organisms → cellular organisms → Bacteria	11165	Open in IMG/M
3300009038\|Ga0099829_11406054	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009162\|Ga0075423_10582565	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300009162\|Ga0075423_12234315	Not Available	595	Open in IMG/M
3300009177\|Ga0105248_10690113	Not Available	1152	Open in IMG/M
3300009792\|Ga0126374_10081996	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300009792\|Ga0126374_10361367	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300009792\|Ga0126374_11354715	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300009792\|Ga0126374_11666828	Not Available	529	Open in IMG/M
3300010043\|Ga0126380_10109206	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300010043\|Ga0126380_10190048	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300010043\|Ga0126380_10295396	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300010043\|Ga0126380_11334776	Not Available	626	Open in IMG/M
3300010043\|Ga0126380_11969613	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300010046\|Ga0126384_10085099	Not Available	2290	Open in IMG/M
3300010047\|Ga0126382_10180948	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300010047\|Ga0126382_10280369	Not Available	1239	Open in IMG/M
3300010047\|Ga0126382_10381844	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300010048\|Ga0126373_10425421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1358	Open in IMG/M
3300010304\|Ga0134088_10128805	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300010335\|Ga0134063_10614059	Not Available	555	Open in IMG/M
3300010358\|Ga0126370_10805036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	838	Open in IMG/M
3300010359\|Ga0126376_10119720	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300010359\|Ga0126376_10311802	Not Available	1374	Open in IMG/M
3300010359\|Ga0126376_11442680	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300010360\|Ga0126372_10088815	All Organisms → cellular organisms → Bacteria	2279	Open in IMG/M
3300010360\|Ga0126372_10238246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1550	Open in IMG/M
3300010360\|Ga0126372_10411285	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300010362\|Ga0126377_10121568	Not Available	2413	Open in IMG/M
3300010362\|Ga0126377_10143907	Not Available	2232	Open in IMG/M
3300010362\|Ga0126377_13215003	Not Available	528	Open in IMG/M
3300010366\|Ga0126379_10479164	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300010376\|Ga0126381_100284495	All Organisms → cellular organisms → Bacteria	2257	Open in IMG/M
3300010376\|Ga0126381_101076752	Not Available	1161	Open in IMG/M
3300010397\|Ga0134124_10510179	All Organisms → cellular organisms → Bacteria → Proteobacteria	1164	Open in IMG/M
3300010868\|Ga0124844_1003616	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300010868\|Ga0124844_1019844	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300011270\|Ga0137391_10923782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300012096\|Ga0137389_11112402	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300012199\|Ga0137383_10277591	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300012201\|Ga0137365_10707987	Not Available	736	Open in IMG/M
3300012202\|Ga0137363_10000424	All Organisms → cellular organisms → Bacteria → Proteobacteria	23633	Open in IMG/M
3300012202\|Ga0137363_10564807	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300012202\|Ga0137363_10657444	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300012204\|Ga0137374_10026100	All Organisms → cellular organisms → Bacteria	6503	Open in IMG/M
3300012205\|Ga0137362_11058684	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300012209\|Ga0137379_10751976	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300012349\|Ga0137387_10950055	Not Available	619	Open in IMG/M
3300012350\|Ga0137372_10025095	All Organisms → cellular organisms → Bacteria	5529	Open in IMG/M
3300012350\|Ga0137372_10033926	All Organisms → cellular organisms → Bacteria	4657	Open in IMG/M
3300012353\|Ga0137367_10033764	All Organisms → cellular organisms → Bacteria	3935	Open in IMG/M
3300012353\|Ga0137367_10055285	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300012354\|Ga0137366_10324698	Not Available	1129	Open in IMG/M
3300012357\|Ga0137384_10291239	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300012361\|Ga0137360_10366891	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300012363\|Ga0137390_11075784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300012929\|Ga0137404_10009609	All Organisms → cellular organisms → Bacteria	6659	Open in IMG/M
3300012929\|Ga0137404_10023468	All Organisms → cellular organisms → Bacteria	4483	Open in IMG/M
3300012930\|Ga0137407_10004850	All Organisms → cellular organisms → Bacteria	9056	Open in IMG/M
3300012944\|Ga0137410_11867519	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300012948\|Ga0126375_10664748	Not Available	806	Open in IMG/M
3300012948\|Ga0126375_11928300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300012971\|Ga0126369_11017849	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300015053\|Ga0137405_1250361	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300015264\|Ga0137403_10256309	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300015264\|Ga0137403_10328685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1419	Open in IMG/M
3300015359\|Ga0134085_10242523	Not Available	783	Open in IMG/M
3300015371\|Ga0132258_11705084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1589	Open in IMG/M
3300015372\|Ga0132256_100234487	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1897	Open in IMG/M
3300015373\|Ga0132257_104041654	Not Available	534	Open in IMG/M
3300016270\|Ga0182036_10052666	Not Available	2565	Open in IMG/M
3300016404\|Ga0182037_10853740	Not Available	787	Open in IMG/M
3300019789\|Ga0137408_1106011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7564	Open in IMG/M
3300021333\|Ga0210324_1211275	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1016	Open in IMG/M
3300021560\|Ga0126371_10115928	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300021560\|Ga0126371_10511388	Not Available	1349	Open in IMG/M
3300021560\|Ga0126371_10567622	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300021560\|Ga0126371_11159021	Not Available	911	Open in IMG/M
3300021560\|Ga0126371_11988324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	699	Open in IMG/M
3300025535\|Ga0207423_1028502	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300025558\|Ga0210139_1037072	Not Available	970	Open in IMG/M
3300025916\|Ga0207663_10647182	Not Available	834	Open in IMG/M
3300025922\|Ga0207646_10941368	Not Available	765	Open in IMG/M
3300025926\|Ga0207659_10693930	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300025930\|Ga0207701_11260974	Not Available	607	Open in IMG/M
3300025961\|Ga0207712_10445524	All Organisms → cellular organisms → Bacteria → Proteobacteria	1097	Open in IMG/M
3300026285\|Ga0209438_1186612	Not Available	549	Open in IMG/M
3300026329\|Ga0209375_1276683	Not Available	552	Open in IMG/M
3300026452\|Ga0256821_1038244	Not Available	549	Open in IMG/M
3300027527\|Ga0209684_1010209	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300027527\|Ga0209684_1042238	Not Available	700	Open in IMG/M
3300027646\|Ga0209466_1124531	Not Available	524	Open in IMG/M
3300027654\|Ga0209799_1009104	All Organisms → cellular organisms → Bacteria → Proteobacteria	2106	Open in IMG/M
3300027654\|Ga0209799_1052090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	915	Open in IMG/M
3300027874\|Ga0209465_10022030	All Organisms → cellular organisms → Bacteria	2943	Open in IMG/M
3300027874\|Ga0209465_10097294	Not Available	1442	Open in IMG/M
3300031446\|Ga0170820_12131027	All Organisms → cellular organisms → Bacteria → Proteobacteria	1104	Open in IMG/M
3300031543\|Ga0318516_10025893	All Organisms → cellular organisms → Bacteria	3051	Open in IMG/M
3300031720\|Ga0307469_10025243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3329	Open in IMG/M
3300031720\|Ga0307469_11587588	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031740\|Ga0307468_100210725	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300031820\|Ga0307473_10487436	Not Available	829	Open in IMG/M
3300031834\|Ga0315290_10385856	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300031912\|Ga0306921_12139129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	592	Open in IMG/M
3300031997\|Ga0315278_10885397	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	896	Open in IMG/M
3300032008\|Ga0318562_10464935	Not Available	734	Open in IMG/M
3300032060\|Ga0318505_10092915	Not Available	1357	Open in IMG/M
3300032064\|Ga0318510_10431186	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300032174\|Ga0307470_10299923	All Organisms → cellular organisms → Bacteria → Proteobacteria	1089	Open in IMG/M
3300032174\|Ga0307470_11391228	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300032205\|Ga0307472_100055279	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2501	Open in IMG/M
3300032205\|Ga0307472_102231753	Not Available	553	Open in IMG/M
3300032397\|Ga0315287_12483097	Not Available	557	Open in IMG/M
3300032829\|Ga0335070_10008270	All Organisms → cellular organisms → Bacteria → Proteobacteria	12194	Open in IMG/M
3300033433\|Ga0326726_10113616	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300033807\|Ga0314866_022333	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300034090\|Ga0326723_0155850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1004	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.07%
Host-Associated	Host-Associated	9.27%
Engineered	Engineered	0.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.44%
Plants	Host-Associated → Plants	9.27%
Aquatic	Environmental → Aquatic	6.62%
Modeled	Engineered → Modeled	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.95%
Marine	Environmental → Aquatic → Marine	3.31%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Peat	Environmental → Terrestrial → Peat	1.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.32%
Sediment	Environmental → Aquatic → Sediment	0.66%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.59%
Loam	Environmental → Terrestrial → Soil → Loam	19.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.30%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Lake	Environmental → Aquatic → Freshwater → Lake	1.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.66%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.66%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.30%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.32%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.32%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.66%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.66%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.66%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	23.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.30%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.31%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.32%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.32%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.32%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.66%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.66%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.66%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.66%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.66%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.66%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021333	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0280.00005470	2166559005	Simulated	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEVNPSP
E41_05855530	2170459005	Grass Soil	LDAAKGSPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEADPSP
F12B_107807082	3300000443	Soil	MSLLDDAFWDALDAAKGDPDAAFPILKAKLTSPSRALIQDLRWLRSRYADDTDDILKETLERFAEKWRARR
F24TB_126278252	3300000550	Soil	MSLLDDAFWDALDAAKGDPDAAFPILKAKLTSPSRALIQDLRWLRSRYADDTDDILKETLERFAEKWR
JGI1027J12803_1088123211	3300000955	Soil	MSLLDDAFWEALDVAQGNEDAAFPILKQKLANPSRDLIQELRWLRSRYADDTDDILKEALGQFPEKWRARRSEEADPSG*
JGI10216J12902_1012794961	3300000956	Soil	MSLLDDAFWEALDAAPGNEDAAFPILKRKLANPSPPLIQELRWLRSKYADDTDDILKQALGRFEKWRARRFEEADPSV*
Ga0055435_100255242	3300003994	Natural And Restored Wetlands	MSLLDDAFWDAVDAARGNEDAAFPILKAKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKWRARRGEETNPSL*
Ga0066398_100883411	3300004268	Tropical Forest Soil	MSLLDDAFWEALDAARGDADAAFPILKKLLSNPSRPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEADPSP*
Ga0066398_101769221	3300004268	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRARYADDTDDVLKETLERFAAKWRARRSEEADPSP*
Ga0066398_101898922	3300004268	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGEAESP*
Ga0066395_100399412	3300004633	Tropical Forest Soil	MSLLDDAFWEALDAVQGNADAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRAQRSGEAESSP*
Ga0066395_101826232	3300004633	Tropical Forest Soil	MSLLDDAFWAALDATRGNAEAAFPVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEGANPPP*
Ga0066685_102371912	3300005180	Soil	MSLLDDAFWEALDAARGDPDAAFPILKTKLARPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP*
Ga0068993_101759413	3300005183	Natural And Restored Wetlands	MSLLDDAFWDAVDAARGNEDAAFPILKAKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKW
Ga0066676_104636482	3300005186	Soil	LDDAFWEALDAARGDPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP*
Ga0065707_105408161	3300005295	Switchgrass Rhizosphere	MSLLDDAFWDALDTAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEVNPSP*
Ga0066388_1000082836	3300005332	Tropical Forest Soil	VSLLDDAFWEALDAAQGDEDAAFLILKVKLSQPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0066388_1015110022	3300005332	Tropical Forest Soil	MSLLDEAFWAALDATRGNADAAFPVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPS*
Ga0066388_1021698622	3300005332	Tropical Forest Soil	MSLLDEAFWEALDAARGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKETLERFAEKWRARRSGEAESP*
Ga0070680_1017980491	3300005336	Corn Rhizosphere	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEANPSP*
Ga0070675_1011699821	3300005354	Miscanthus Rhizosphere	MSLLDDAFWDALDAARGNPDAAFPILKAKLTSPSRALIQDLRWLRSRYADDTDDILKETLERFAEKWRARRDEEANP
Ga0008090_150048191	3300005363	Tropical Rainforest Soil	LDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRARYADDTDDVLKETLERFAAKWRARRSEEADPSP*
Ga0070667_1017650241	3300005367	Switchgrass Rhizosphere	MSLLDDAFWDALDAATGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEANPSP*
Ga0070707_1009206792	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDDAFWAALDAARGNADAAFPILKTKLVSPSPPLIQELRWLRSRYADDTDDILKEALGRFAERWRARRDEEANPSP*
Ga0066905_1000853872	3300005713	Tropical Forest Soil	MSLLDDAFWEALDAVQGNAEAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAESP*
Ga0066905_1001145221	3300005713	Tropical Forest Soil	MSLLDDAFWEALDAAQGNVDAAFPILKKLLANPSPPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSGEANPPPGA*
Ga0066903_1003709182	3300005764	Tropical Forest Soil	VSLLDDAFWEALDAAQGDEDAAFLILKVKLSRPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0066903_1012085192	3300005764	Tropical Forest Soil	MSLLDDAFWAALDATRGNAEAAFHVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEGANPPP*
Ga0066903_1052471661	3300005764	Tropical Forest Soil	MSLLDDAFWAALDATRGNADAAFPVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPS*
Ga0066903_1054479731	3300005764	Tropical Forest Soil	MSLLDDAFWEALDAVQGNADAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRA
Ga0074479_107536897	3300005829	Sediment (Intertidal)	RGNEDAAFPILKSKLTNPAPALIQELRWLRSRYADDTDDILREALGRVAEKWRAQRGREADPSP*
Ga0075433_103801752	3300006852	Populus Rhizosphere	LDDAMWEAVDVAQGDEDAAFPILKRRLADPSAALIQELRWIRNKYADDYDDILKEALRRAAERWRARRDEEANPSL*
Ga0075433_110774712	3300006852	Populus Rhizosphere	MSLLDDAFWDALDAARGNPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP*
Ga0075425_1000031977	3300006854	Populus Rhizosphere	MSLLDDAMWEAVDVAQGDEDAAFPILKRKLADPSAALIQELRWIRNKYADDYDDILKEALRRAAERWRARRDEEANPSL*
Ga0075434_1000059478	3300006871	Populus Rhizosphere	MSLLDDAMWEAVDVAQGDEDAAFPILKRRLADPSAALIQELRWIRNKYADDYDDILKEALRRAAERWRARRDEEANPSL*
Ga0099829_114060541	3300009038	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRSEEADPSV*
Ga0075423_105825653	3300009162	Populus Rhizosphere	MWEAVDVAQGDEDAAFPILKRKLADPSAALIQELRWIRNKYADDYDDILKEALRRAAERWRARRDEEANPSL*
Ga0075423_122343152	3300009162	Populus Rhizosphere	MSLLDDAFWDALDAARGNPDAAFPILKTKLASPSRALIQDLRWLRSRYAADTVEILKEALGRFAEKWRARRDEEANPSP*
Ga0105248_106901131	3300009177	Switchgrass Rhizosphere	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARQDEEANPSS*
Ga0126374_100819962	3300009792	Tropical Forest Soil	LDDAFWEALDAAQGDEDAAFLILKVKLSQPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0126374_103613672	3300009792	Tropical Forest Soil	MSLLDDAFWEALDAVQGNADAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAGKWRAQRSGEAESSP*
Ga0126374_113547152	3300009792	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAESP*
Ga0126374_116668282	3300009792	Tropical Forest Soil	MSLLDDKFWEALDAVQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGEAESP*
Ga0126380_101092061	3300010043	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEADQSP*
Ga0126380_101900481	3300010043	Tropical Forest Soil	VGWSRGGRAMSLLDDAFWEALDAARGDADAAFPILKKLLSNPSRPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEADPSP*
Ga0126380_102953962	3300010043	Tropical Forest Soil	LDDAFWEALDAAQGDEDAAFLILKVKLSQPSPALIQELRWIRSKYADDTDDVLKETLERFAEKWRRRRGNEANPSV*
Ga0126380_113347762	3300010043	Tropical Forest Soil	LDDAFWEALDAAQGDEDAAFTILKVKLANPSAALIQELRWIRSRYADDTEDVLKETLRRFAEKWRAQRGDQADPSA*
Ga0126380_119696131	3300010043	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRSRYADDTDDVLKETLERFAAKW
Ga0126384_100850992	3300010046	Tropical Forest Soil	MSLLDDAFWEALDATRGNADAAFPILKKLLANPSPPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRGEEANPPP*
Ga0126382_101809481	3300010047	Tropical Forest Soil	DGPMSLLDDAFWEALDATRGNADAAFPILKKLLANPSPPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEADPSP*
Ga0126382_102803691	3300010047	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRSRYADDTDDVLKETLERFAAKWQARRNEKADPSP*
Ga0126382_103818442	3300010047	Tropical Forest Soil	LDAAQGDEDAAFLILKVKLSRPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0126373_104254211	3300010048	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQS
Ga0134088_101288053	3300010304	Grasslands Soil	MSLLDDAFWDALDAARGNPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRAR
Ga0134063_106140591	3300010335	Grasslands Soil	MSLLDDAFWEALDAARGDPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP*
Ga0126370_108050362	3300010358	Tropical Forest Soil	MSLLDDKFWEALDAVQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGETESP*
Ga0126376_101197202	3300010359	Tropical Forest Soil	LDAAQGVEDAAFLILKVKLSQPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0126376_103118022	3300010359	Tropical Forest Soil	MSLLDDAFWAALDATRGNADAAFPILKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPS*
Ga0126376_114426802	3300010359	Tropical Forest Soil	MSLLDDAFWKALDAAEGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAESP*
Ga0126372_100888152	3300010360	Tropical Forest Soil	LDAAQGDEDAAFLILKVKLSQPSPALIQELRWIRSRYADDTDDVLKETLERFAEKWRERRAGEADPPA*
Ga0126372_102382462	3300010360	Tropical Forest Soil	MSLLDDKFWEALDAVQGNADAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRAQRSGEAESSP*
Ga0126372_104112852	3300010360	Tropical Forest Soil	MSLLDDAFWEALDAVEGNADAAFPVLKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAVKWRARRSGEPEPSP*
Ga0126377_101215681	3300010362	Tropical Forest Soil	MSLLDDAFWEALDAARGDADAAFPILKKLLSNPSRPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEADPSP
Ga0126377_101439073	3300010362	Tropical Forest Soil	MSLLDDAFWEALDAAQGNVDAAFPILKKLLANPSPPLIQELRWLRNRYADDTDDVLKETLERFA
Ga0126377_132150031	3300010362	Tropical Forest Soil	LDAAQGDEDAAFTILKVKLANPSAALIQELRWIRSRYADDTEDVLKETLRRFAEKWRAQRGDQADPSA*
Ga0126379_104791642	3300010366	Tropical Forest Soil	MSLLDDAFWAALDATRGNADAAFPVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPP*
Ga0126381_1002844951	3300010376	Tropical Forest Soil	MSLLDDAFWEALDATRGNADAAFPILKKLLANPSPPLIQELRWLRNRFADDTDDVLKETLERFAEKWRARRSEEANPPP*
Ga0126381_1010767521	3300010376	Tropical Forest Soil	MSLLDDAFWEALDAARGDADAAFPILKKLLSNPSRPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPS*
Ga0134124_105101791	3300010397	Terrestrial Soil	MGLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKW
Ga0124844_10036162	3300010868	Tropical Forest Soil	MSLLDDAFWEALDAVQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGEAESP*
Ga0124844_10198442	3300010868	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGETESP*
Ga0137391_109237822	3300011270	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEADPSV*
Ga0137389_111124022	3300012096	Vadose Zone Soil	MSLLDDAVWEALDAAQGNAEAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRGEEANPSL*
Ga0137383_102775911	3300012199	Vadose Zone Soil	MSLLDDAFWDALDAARGNADEAFPILKTKLADPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137365_107079871	3300012201	Vadose Zone Soil	MSLLDDAFWDALDTARGNADEAFPILKTKLADPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137363_100004242	3300012202	Vadose Zone Soil	LDDAFWEALDAARGNEDAAFPILKAKLADPSPGLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRGEEANPSL*
Ga0137363_105648072	3300012202	Vadose Zone Soil	LDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSKYADDTDDILKETLGRFAEKWRARRSEEADPSG*
Ga0137363_106574442	3300012202	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEA
Ga0137374_100261004	3300012204	Vadose Zone Soil	LDAARGNEDAAFPILKTKLTDPSPGLIQELRWLRNRYADDTDDILREALGRVAEKWRARRGEEANPPP*
Ga0137362_110586842	3300012205	Vadose Zone Soil	LDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSKYADDTDDILKETLGRFAEKWRARRSEEADPS
Ga0137379_107519761	3300012209	Vadose Zone Soil	LPAGLSAVNAGQRLTGRRGMSLLDDAFWDALDAARGNADEAFPILKTKLADPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137387_109500551	3300012349	Vadose Zone Soil	MSLLDDAFWDALDAARGNADEAFPILKTKLAEPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137372_100250955	3300012350	Vadose Zone Soil	LDAAPGNADAAFPILKTKLANPSPALIQELRWLRSRYADDTDDILKEALGRFAEKWWARRDEEANPSL*
Ga0137372_100339262	3300012350	Vadose Zone Soil	MSLLDDAFWDALDAARGNADEAFPILKTKLADPAPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137367_100337644	3300012353	Vadose Zone Soil	LDDAFWDALDAARGNADEAFPILKTKLADPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137367_100552852	3300012353	Vadose Zone Soil	MSLLDDAFWDALDAARGNEDAAFPILKTKLTDPSPGLIQELRWLRNRYADDTDDILREALGRVAEKWRARRGEEANPPP*
Ga0137366_103246982	3300012354	Vadose Zone Soil	LDAARGNADAAFPILKTKLANPSPALIQELRWLRSRYADDTDDILKEALGRFAEKWWARRDEEANPSL*
Ga0137384_102912392	3300012357	Vadose Zone Soil	MSLVDDAFWDALDAARGNADEAFPILKTKLADPSPALIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSL*
Ga0137360_103668912	3300012361	Vadose Zone Soil	MSLLDDAIWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSKYADDTDDILKETLGRFAEKWRARRSEEADPSG*
Ga0137390_110757842	3300012363	Vadose Zone Soil	VSLLDDAFWEALDAARGNEDAAFPILKAKLADPSPGLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEADPSV*
Ga0137404_100096094	3300012929	Vadose Zone Soil	LDDAFWEALDAAQGNEDAAFPILKTKLADPSPGLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRGEDADPSL*
Ga0137404_100234685	3300012929	Vadose Zone Soil	MSLLDDAFWEALDAAQGNAEAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRGEAADPSG*
Ga0137407_100048507	3300012930	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEGAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEADPSV*
Ga0137410_118675191	3300012944	Vadose Zone Soil	LDDAFWEALDAAQGNEDAAFPILKTKLADPSPGLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRGEEADPSL*
Ga0126375_106647481	3300012948	Tropical Forest Soil	AFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRARYADDTDDVLKETLERFAAKWRARRSEEADPSP*
Ga0126375_119283002	3300012948	Tropical Forest Soil	MSLLDDAFWKALDAAQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAES
Ga0126369_110178492	3300012971	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAE
Ga0137405_12503612	3300015053	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEGAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRGEAADPSG*
Ga0137403_102563092	3300015264	Vadose Zone Soil	MSLLDDAFWEALDAAQGNAEAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRAR
Ga0137403_103286852	3300015264	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEGAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRAR
Ga0134085_102425232	3300015359	Grasslands Soil	MSLLDDAFWDALDAARGDPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP*
Ga0132258_117050841	3300015371	Arabidopsis Rhizosphere	MSLLDDAFWEALDAAKGSPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRA
Ga0132256_1002344871	3300015372	Arabidopsis Rhizosphere	LDAAKGSPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEADPSP*
Ga0132257_1040416541	3300015373	Arabidopsis Rhizosphere	MSLLDDAFWDALDAAKGNPDAAFPILKTKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEADPSP*
Ga0182036_100526662	3300016270	Soil	MRLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEADQSP
Ga0182037_108537401	3300016404	Soil	MSLLDDAFWEALDAAQGNTDAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEADQSP
Ga0137408_11060112	3300019789	Vadose Zone Soil	MSLLDDAFWEALDAAQGNEGAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKETLGRFAEKWRARRSEEADPSG
Ga0210324_12112752	3300021333	Estuarine	MSLLDDAFWDAVDAARGNEDAAFPILKSKLTNPAPALIQELRWLRSRYADDTDDILREALGRVAEKWRAQRGKEANPSP
Ga0126371_101159281	3300021560	Tropical Forest Soil	MSLLDDAFWEALDATRGNADAAFPILKKLLANPSPPLIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEEANPPP
Ga0126371_105113882	3300021560	Tropical Forest Soil	MSLLDDKFWEALDAVQGNAEAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAESP
Ga0126371_105676222	3300021560	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRARYADDTDDVLKETLERFAAKWRARQSEEADPSP
Ga0126371_111590212	3300021560	Tropical Forest Soil	MSLLDDAFWAALDATRGNAEAAFPVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEGANPPP
Ga0126371_119883242	3300021560	Tropical Forest Soil	MSLLDDAFWEALDAVQGNADAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRAQRSGEAESSP
Ga0207423_10285022	3300025535	Natural And Restored Wetlands	MSLLDDAFWDAVDAARGNEDAAFPILKAKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKWRARRGEETNPSL
Ga0210139_10370723	3300025558	Natural And Restored Wetlands	FWDAVDAARGNEDAAFPILKAKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKWRARRGEETNPSL
Ga0207663_106471821	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HWFTRRRGMSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEANPSP
Ga0207646_109413681	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDDAFWAALDAARGNADAAFPILKTKLVSPSSPLIQELRWLRSRYADDTDDILKEALGRFAERWRARRDEEANPSP
Ga0207659_106939301	3300025926	Miscanthus Rhizosphere	MSLLDDAFWDALDAARGNPDAAFPILKAKLTSPSRALIQDLRWLRSRYADDTDDILKETLERFAEKWRARRDEEANPSP
Ga0207701_112609742	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARQDEEANPSP
Ga0207712_104455241	3300025961	Switchgrass Rhizosphere	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDE
Ga0209438_11866122	3300026285	Grasslands Soil	MSLLDDAFWDALDAARGNPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP
Ga0209375_12766831	3300026329	Soil	MSLLDDAFWEALDAARGDPDAAFPILKTKLASPSRALIQDLRWLRSRYADDTDDILKEALGRFAEKWRARRDEEANPSP
Ga0256821_10382441	3300026452	Sediment	GDRSMSLLDDAFWEASDAAQGNVDAAFPILKHKLANPSPPLILELRWLRSKYADDTDDILKAALGRFAETWRARRGEEADPSG
Ga0209684_10102093	3300027527	Tropical Forest Soil	MSLLDDKFWEALDAVQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGEAES
Ga0209684_10422382	3300027527	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRSRYADDTDDVLKETLERFAAKWQARRNEKADPSP
Ga0209466_11245311	3300027646	Tropical Forest Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRSRYADDTDDVLKETLERFAAKWQ
Ga0209799_10091041	3300027654	Tropical Forest Soil	MSLLDDAFWEALDAARGDADAAFPILKKLLSNPSRPLIQELRWLRARYADDTDDVLKETLERFAAKWRARRSEEADPSP
Ga0209799_10520901	3300027654	Tropical Forest Soil	MSLLDDAFWEALDAVQGNAEAAFPILKKLLTNPSPPLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGEAESP
Ga0209465_100220302	3300027874	Tropical Forest Soil	MSLLDDKFWEALDAVQGNADAAFPILKKLLTNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARQSGEAESP
Ga0209465_100972942	3300027874	Tropical Forest Soil	MSLLDDAFWAALDATRGNAEAAFHVLKKLLANPSPALIQELRWLRNRYADDTDDVLKETLERFAEKWRARRSEGANPPP
Ga0170820_121310271	3300031446	Forest Soil	MSLLDDAFWDALDAAKGNSDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRARRDEEVNPSP
Ga0318516_100258933	3300031543	Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEADQSP
Ga0307469_100252432	3300031720	Hardwood Forest Soil	MSLLDDAFWEALDAAQGNADAAFPILKRKLANPSRGLIQELRWLRSRYADDTDDILKESLGAVRREMAGATGR
Ga0307469_115875882	3300031720	Hardwood Forest Soil	MSLLDDAIWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRDEERNPALRA
Ga0307468_1002107252	3300031740	Hardwood Forest Soil	MSFLDDAFWEALDAAQGNADAAFPILKRKLANPSRGLIQELRWLRSRYADDTDDILKEALGAVRREMAGATGR
Ga0307473_104874362	3300031820	Hardwood Forest Soil	LDAARGDADAAFPILKTKLVSPSPPLIQELRWLRSRYADDTDDILKEALGRFAERWRARRDEEANPSP
Ga0315290_103858563	3300031834	Sediment	MSLLDDAFWDAVDAARGNEDAAFPILKTKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAAQWRAQRGNEANPSL
Ga0306921_121391292	3300031912	Soil	RRAMSLLDDAFWEALDAAQGNTDAAFPILKKLLMNPSPSLIQELRWLRSRYADDTDDVLKEALERFAEKWRARRSGQAESP
Ga0315278_108853971	3300031997	Sediment	MSLLDDAFWDAVDAARGNEDAAFPILKTKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKWRAQRGNEANPSL
Ga0318562_104649351	3300032008	Soil	AVDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEADQSP
Ga0318505_100929153	3300032060	Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAA
Ga0318510_104311861	3300032064	Soil	MSLLDDAFWEALDATRGDADAAFPILKKLLANPSRALIQELRWLRNRYADDTDDVLKETLERFAAKWRARRSEEAD
Ga0307470_102999231	3300032174	Hardwood Forest Soil	MSLLDDAFWDALDAAKGNPDAAFPILKAKLTSPSRALIQDLRWLRNRYADDTDDILKETLERFAEKWRAR
Ga0307470_113912282	3300032174	Hardwood Forest Soil	MSLLDDAFWEALDAAQGNEDAAFPILKRKLANPSRDLIQELRWLRSRYADDTDDILKEALGRFAEKWRARRDEERNPALRA
Ga0307472_1000552791	3300032205	Hardwood Forest Soil	MSLLDDAFWEALDDAQGNEDAAFPILKRKLANPSRDLIQELRWLRSKYADDTDDILKEALGRFAEKWRARRDE
Ga0307472_1022317532	3300032205	Hardwood Forest Soil	VSLLDDAFWEALDAVRGNADAGFPILKAKLADPSPRLIQELRWLRGRYADDTDDILKEALGWFAEKWRARRDEEANPPL
Ga0315287_124830972	3300032397	Sediment	PELHAGLSAVHAGQRLTRRRGMSLLDDAFWDAVDAARGNEDAAFPILKTKLTNPAPALIQELRWLRSRYADDTDDILKEALGRVAEKWRAQRGNEANPSL
Ga0335070_100082708	3300032829	Soil	MSLLDDAFWDAVDAARGNEDAAFPILKTKLADPSPGLIQELRWLRSRYADDTDDILKEALGRVAEKWRARRDEEANPSL
Ga0326726_101136163	3300033433	Peat Soil	MSLLDDAFWDALDAARGNEDAAFPILKTKLADPSPGLIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSP
Ga0314866_022333_440_679	3300033807	Peatland	VSLLDDAFWEALDAAQGDEDAAFTILKVKLANPSPALIQELRWIRSKYADDTDDVLKETLLRFAEKWRERRGNEADPSA
Ga0326723_0155850_708_947	3300034090	Peat Soil	MSLLDDAFWDALDAARGNEDAAFRILKTKLADPSPGLIQELRWLRNRYADDTDDILKEALGRVAEKWRARRDEEANPSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F046225

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences