Metagenome / Metatranscriptome Family F047338

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F047338
Family Type	Metagenome / Metatranscriptome
Number of Sequences	150
Average Sequence Length	82 residues
Representative Sequence	MPIDPSIEHSAFEPEATAAMGEAFEAACKELHDAGKAEVVRKLVAERIIAAASRGELDPVRLRTAALSWIISHPNVARSFALSEL
Number of Associated Samples	85
Number of Associated Scaffolds	150

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.05 %
% of genes near scaffold ends (potentially truncated)	29.33 %
% of genes from short scaffolds (< 2000 bps)	85.33 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (45.333 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.41% β-sheet: 0.00% Coil/Unstructured: 41.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.69.2.1: Ypt/Rab-GAP domain of gyp1p	d2g77a1	2g77	0.70318
a.286.1.1: Sama2622-like	d2pv4a1	2pv4	0.69699
a.74.1.0: automated matches	d3mi9b1	3mi9	0.69445
a.204.1.1: Type II deoxyuridine triphosphatase	d1w2ya_	1w2y	0.68946
a.74.1.1: Cyclin	d2i53a1	2i53	0.68233

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 150 Family Scaffolds
PF00656	Peptidase_C14	12.67
PF02796	HTH_7	6.67
PF01717	Meth_synt_2	4.00
PF03401	TctC	2.00
PF00378	ECH_1	2.00
PF02310	B12-binding	1.33
PF13458	Peripla_BP_6	0.67
PF13426	PAS_9	0.67
PF01209	Ubie_methyltran	0.67
PF02397	Bac_transf	0.67
PF13545	HTH_Crp_2	0.67
PF01494	FAD_binding_3	0.67
PF01361	Tautomerase	0.67
PF13403	Hint_2	0.67
PF00589	Phage_integrase	0.67
PF08448	PAS_4	0.67
PF13936	HTH_38	0.67
PF13450	NAD_binding_8	0.67
PF00881	Nitroreductase	0.67
PF13340	DUF4096	0.67
PF12697	Abhydrolase_6	0.67
PF00291	PALP	0.67
PF07366	SnoaL	0.67

COG ID	Name	Functional Category	% Frequency in 150 Family Scaffolds
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	12.67
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	4.00
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.00
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.33
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.67
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.67
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.67
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.67
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.67
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.67
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
All Organisms	root	All Organisms	42.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
cellular organisms	root	All Organisms → cellular organisms	42.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.00 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.00 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	17.33 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15.33 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.67 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.33 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.00 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	2.67 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.33 %
Bradyrhizobium sp. Y36	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Y36	0.67 %
Hyphomicrobium sp. MC1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. MC1	0.67 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.67 %
Bradyrhizobium sp. 170	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	0.67 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10026020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1592	Open in IMG/M
3300002907\|JGI25613J43889_10029029	Not Available	1566	Open in IMG/M
3300002917\|JGI25616J43925_10118140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1080	Open in IMG/M
3300002917\|JGI25616J43925_10173981	Not Available	847	Open in IMG/M
3300005332\|Ga0066388_100122276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3128	Open in IMG/M
3300005332\|Ga0066388_100131165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3051	Open in IMG/M
3300005332\|Ga0066388_100225301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2505	Open in IMG/M
3300005332\|Ga0066388_100280075	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300005332\|Ga0066388_100779951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1551	Open in IMG/M
3300005332\|Ga0066388_101301698	All Organisms → cellular organisms → Bacteria → Proteobacteria	1253	Open in IMG/M
3300005332\|Ga0066388_103669682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	784	Open in IMG/M
3300005764\|Ga0066903_100830940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1658	Open in IMG/M
3300005764\|Ga0066903_101019840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1515	Open in IMG/M
3300005764\|Ga0066903_104507793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	743	Open in IMG/M
3300005764\|Ga0066903_105256198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	685	Open in IMG/M
3300006163\|Ga0070715_10224181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300006163\|Ga0070715_10500447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	695	Open in IMG/M
3300007255\|Ga0099791_10012278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3604	Open in IMG/M
3300007258\|Ga0099793_10037335	Not Available	2096	Open in IMG/M
3300007258\|Ga0099793_10205946	Not Available	944	Open in IMG/M
3300007265\|Ga0099794_10780438	Not Available	511	Open in IMG/M
3300007788\|Ga0099795_10355191	Not Available	656	Open in IMG/M
3300009038\|Ga0099829_10301422	Not Available	1314	Open in IMG/M
3300009038\|Ga0099829_10618099	Not Available	901	Open in IMG/M
3300009038\|Ga0099829_10899222	Not Available	735	Open in IMG/M
3300009088\|Ga0099830_10676944	Not Available	849	Open in IMG/M
3300009088\|Ga0099830_11043490	Not Available	677	Open in IMG/M
3300009089\|Ga0099828_11357416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Y36	628	Open in IMG/M
3300009089\|Ga0099828_11535955	Not Available	587	Open in IMG/M
3300009143\|Ga0099792_10007516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4463	Open in IMG/M
3300009143\|Ga0099792_10375499	Not Available	864	Open in IMG/M
3300009143\|Ga0099792_10426932	Not Available	816	Open in IMG/M
3300009143\|Ga0099792_10967250	Not Available	567	Open in IMG/M
3300009792\|Ga0126374_10822224	Not Available	712	Open in IMG/M
3300009792\|Ga0126374_11396892	Not Available	570	Open in IMG/M
3300009826\|Ga0123355_10821458	Not Available	1031	Open in IMG/M
3300010043\|Ga0126380_10152913	Not Available	1481	Open in IMG/M
3300010043\|Ga0126380_11206762	Not Available	652	Open in IMG/M
3300010043\|Ga0126380_11853481	Not Available	547	Open in IMG/M
3300010046\|Ga0126384_11997852	Not Available	554	Open in IMG/M
3300010046\|Ga0126384_12033671	Not Available	550	Open in IMG/M
3300010047\|Ga0126382_12260506	Not Available	525	Open in IMG/M
3300010049\|Ga0123356_10525168	Not Available	1342	Open in IMG/M
3300010159\|Ga0099796_10107295	Not Available	1059	Open in IMG/M
3300010159\|Ga0099796_10170599	Not Available	868	Open in IMG/M
3300010358\|Ga0126370_10381451	Not Available	1151	Open in IMG/M
3300010358\|Ga0126370_10486721	Not Available	1038	Open in IMG/M
3300010358\|Ga0126370_10922791	Not Available	790	Open in IMG/M
3300010359\|Ga0126376_12017860	Not Available	619	Open in IMG/M
3300010359\|Ga0126376_13150709	Not Available	510	Open in IMG/M
3300010360\|Ga0126372_10187959	Not Available	1704	Open in IMG/M
3300010360\|Ga0126372_10699792	Not Available	989	Open in IMG/M
3300010362\|Ga0126377_10267701	Not Available	1671	Open in IMG/M
3300010362\|Ga0126377_10885311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	955	Open in IMG/M
3300010362\|Ga0126377_12040621	Not Available	649	Open in IMG/M
3300010362\|Ga0126377_12658859	Not Available	576	Open in IMG/M
3300010362\|Ga0126377_12739705	Not Available	568	Open in IMG/M
3300010366\|Ga0126379_10414758	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300010376\|Ga0126381_103018963	Not Available	668	Open in IMG/M
3300010398\|Ga0126383_10106764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. MC1	2517	Open in IMG/M
3300010398\|Ga0126383_10214912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1858	Open in IMG/M
3300010398\|Ga0126383_10477647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1301	Open in IMG/M
3300010398\|Ga0126383_10837708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1004	Open in IMG/M
3300010398\|Ga0126383_12143697	Not Available	646	Open in IMG/M
3300010868\|Ga0124844_1062170	Not Available	1350	Open in IMG/M
3300011269\|Ga0137392_10216045	Not Available	1572	Open in IMG/M
3300011269\|Ga0137392_10363124	Not Available	1200	Open in IMG/M
3300011271\|Ga0137393_10063436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2925	Open in IMG/M
3300011271\|Ga0137393_11197297	Not Available	645	Open in IMG/M
3300012096\|Ga0137389_10098821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2316	Open in IMG/M
3300012096\|Ga0137389_10170649	Not Available	1795	Open in IMG/M
3300012096\|Ga0137389_10491307	Not Available	1052	Open in IMG/M
3300012096\|Ga0137389_11578476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	552	Open in IMG/M
3300012096\|Ga0137389_11684851	Not Available	530	Open in IMG/M
3300012189\|Ga0137388_10050587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3368	Open in IMG/M
3300012189\|Ga0137388_10651704	All Organisms → cellular organisms → Bacteria → Proteobacteria	978	Open in IMG/M
3300012189\|Ga0137388_10806811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	870	Open in IMG/M
3300012189\|Ga0137388_11078932	Not Available	739	Open in IMG/M
3300012202\|Ga0137363_10150214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1829	Open in IMG/M
3300012202\|Ga0137363_10363594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200	Open in IMG/M
3300012202\|Ga0137363_10407931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1133	Open in IMG/M
3300012203\|Ga0137399_10185502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1681	Open in IMG/M
3300012203\|Ga0137399_11040703	Not Available	689	Open in IMG/M
3300012205\|Ga0137362_10456742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1106	Open in IMG/M
3300012207\|Ga0137381_11463360	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300012210\|Ga0137378_11308600	Not Available	640	Open in IMG/M
3300012211\|Ga0137377_10041213	All Organisms → cellular organisms → Bacteria → Proteobacteria	4231	Open in IMG/M
3300012211\|Ga0137377_11229237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	679	Open in IMG/M
3300012361\|Ga0137360_10076230	Not Available	2499	Open in IMG/M
3300012361\|Ga0137360_10710088	Not Available	863	Open in IMG/M
3300012361\|Ga0137360_11622950	Not Available	552	Open in IMG/M
3300012362\|Ga0137361_10096657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2561	Open in IMG/M
3300012362\|Ga0137361_11041721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	738	Open in IMG/M
3300012363\|Ga0137390_11174942	Not Available	715	Open in IMG/M
3300012683\|Ga0137398_10107269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1765	Open in IMG/M
3300012918\|Ga0137396_10128742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1830	Open in IMG/M
3300012923\|Ga0137359_10347843	Not Available	1318	Open in IMG/M
3300012924\|Ga0137413_10106506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1759	Open in IMG/M
3300012927\|Ga0137416_10736107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	868	Open in IMG/M
3300012927\|Ga0137416_10911642	Not Available	782	Open in IMG/M
3300012930\|Ga0137407_12103222	Not Available	539	Open in IMG/M
3300012948\|Ga0126375_11903807	Not Available	522	Open in IMG/M
3300012971\|Ga0126369_10425372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1372	Open in IMG/M
3300012971\|Ga0126369_11075342	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300015241\|Ga0137418_10041786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4226	Open in IMG/M
3300015241\|Ga0137418_11015356	Not Available	598	Open in IMG/M
3300015245\|Ga0137409_10047129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4107	Open in IMG/M
3300015245\|Ga0137409_10622439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300015264\|Ga0137403_10428209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1201	Open in IMG/M
3300017970\|Ga0187783_10576247	Not Available	815	Open in IMG/M
3300017970\|Ga0187783_10724915	Not Available	718	Open in IMG/M
3300017970\|Ga0187783_11215854	Not Available	543	Open in IMG/M
3300017975\|Ga0187782_10483329	Not Available	946	Open in IMG/M
3300018060\|Ga0187765_10909528	Not Available	596	Open in IMG/M
3300020581\|Ga0210399_10394535	Not Available	1154	Open in IMG/M
3300020581\|Ga0210399_11374524	Not Available	553	Open in IMG/M
3300021086\|Ga0179596_10347649	Not Available	744	Open in IMG/M
3300021170\|Ga0210400_10057953	All Organisms → cellular organisms → Bacteria	3017	Open in IMG/M
3300021170\|Ga0210400_10151948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1865	Open in IMG/M
3300021170\|Ga0210400_10235262	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300021170\|Ga0210400_10368261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1184	Open in IMG/M
3300021170\|Ga0210400_11276811	Not Available	589	Open in IMG/M
3300021478\|Ga0210402_10012844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7194	Open in IMG/M
3300025905\|Ga0207685_10234139	Not Available	880	Open in IMG/M
3300026304\|Ga0209240_1234993	Not Available	558	Open in IMG/M
3300026320\|Ga0209131_1345678	Not Available	552	Open in IMG/M
3300026351\|Ga0257170_1011300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	1108	Open in IMG/M
3300026355\|Ga0257149_1000850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2717	Open in IMG/M
3300026369\|Ga0257152_1032079	Not Available	566	Open in IMG/M
3300026376\|Ga0257167_1077840	Not Available	522	Open in IMG/M
3300026475\|Ga0257147_1069462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	538	Open in IMG/M
3300026490\|Ga0257153_1110006	Not Available	544	Open in IMG/M
3300026496\|Ga0257157_1022946	Not Available	1018	Open in IMG/M
3300026514\|Ga0257168_1146249	Not Available	526	Open in IMG/M
3300026557\|Ga0179587_10226999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1190	Open in IMG/M
3300027643\|Ga0209076_1129575	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300027874\|Ga0209465_10036267	All Organisms → cellular organisms → Bacteria	2335	Open in IMG/M
3300027875\|Ga0209283_10883304	Not Available	542	Open in IMG/M
3300027903\|Ga0209488_10147676	Not Available	1774	Open in IMG/M
3300027903\|Ga0209488_10176679	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300027903\|Ga0209488_10762633	Not Available	688	Open in IMG/M
3300028536\|Ga0137415_11066780	Not Available	620	Open in IMG/M
3300031022\|Ga0138301_1768606	Not Available	579	Open in IMG/M
3300031573\|Ga0310915_10952812	Not Available	600	Open in IMG/M
3300031715\|Ga0307476_10263503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1260	Open in IMG/M
3300031718\|Ga0307474_10850152	Not Available	722	Open in IMG/M
3300032067\|Ga0318524_10434767	Not Available	686	Open in IMG/M
3300032089\|Ga0318525_10322903	Not Available	793	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.67%
Host-Associated	Host-Associated	1.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.67%
Arthropoda	Host-Associated → Arthropoda	1.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.67%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.67%
Loam	Environmental → Terrestrial → Soil → Loam	10.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.33%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	65.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.00%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.33%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	45.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.33%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.33%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.67%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100260202	3300000597	Forest Soil	MPIDPFIEHGAFGPEATAAMGEAFEAACKELHEVGQLAMVRKVVAQRVIEAACKGELDPVRLGMAALSWIIVTQMSSAGLR*
JGI25613J43889_100290292	3300002907	Grasslands Soil	MPIDPSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLVAERIIAAASRGELDPGRLRTAALSWIVSHPTLVRRFASSEL*
JGI25616J43925_101181401	3300002917	Grasslands Soil	EQGVFEPEATAALGEAFEAACKELHDGGEPEVRKLIAKRMIAAASSGELDPVRLRAAALSGLSVVQISSAA*
JGI25616J43925_101739812	3300002917	Grasslands Soil	MLIDLEHGAFEPEATVAMGEAFEAACKELRDLGQLQMVRNVVAKRIIAAARRGELDPVRLRTAALSWIIVTPMSSAASRAERIADPALGPATI*
Ga0066388_1001222761	3300005332	Tropical Forest Soil	MPIDLSIENGAFEPEATAAMGEAFEAACQELHDVGKAEGVRKLIAEQIIAAATRGELDPIRLRIAALSWIISQPNVARSFALGES*
Ga0066388_1001311654	3300005332	Tropical Forest Soil	MFSGVEAILIDRSMEDIAFEPEATATMGEAFEAACEELHEVGQLPTVRKVIAQQIIGAAGRGELGLVRLRAAALSWIIIT*
Ga0066388_1002253013	3300005332	Tropical Forest Soil	MPIDPCLEHGVFEPEATTAMGEAFEAACKELHEVGRLSTVRNCVAQRIIAAARRGELDPVRLRTAAISWIIVAQMSAAAASH*
Ga0066388_1002800752	3300005332	Tropical Forest Soil	MPIDPCLEHGVFEPEATTAMGEAFEAACKELHKVGQLQMVHNVLAKRIIAAARGGELDPVRLRTAALNWIMATQMSAAGSYWA*
Ga0066388_1007799511	3300005332	Tropical Forest Soil	MPINPSIEHHAFEPEATAAMGEAFEAACEQLHEAGKAEGVRKLLAERIIAAASRGELDPIRLRTAALSWIINHPTLVRRFAPSES*
Ga0066388_1013016981	3300005332	Tropical Forest Soil	MGSAGVAAMPIDPSIENGVFEPEATAAMAEAFEAVCKELHDAGKAEVVRKLIAERIIGAASRGELDPVRLRTAALSWILSHPNVARSFALSEL*
Ga0066388_1036696822	3300005332	Tropical Forest Soil	MPVDPCLERGIFEPEVTAAMGEAFEAACKELHEVGQLPTVRNFIAQRIIAAVRRGELDPVRLRTAAINWIMVAPNVGRRSFALSPL*
Ga0066903_1008309403	3300005764	Tropical Forest Soil	MSNDPSIEHGAFEPEATAAMAEAFEAACKELHDAGKTELVRKLIAERIIGAACKGELDPVRLRTAALSSILGLPNFARSFALSES*
Ga0066903_1010198401	3300005764	Tropical Forest Soil	MSIDPSIEHHAFEPEATAAMGEAFEAACQQLHDAGEAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRRFAPSEL*
Ga0066903_1045077931	3300005764	Tropical Forest Soil	MPVDPCLERGIFEPEVTAAMGEAFEAACKELHEVGQLPTVRNFIAQRIIAAVRRGELDPVRLRTAAISWIIVAPNVGRRSFALSPL*
Ga0066903_1052561981	3300005764	Tropical Forest Soil	MPINRSIEHHAFEPEATAAMGEAFEAACEQLHDAGKAEGVRKLLAERIIAAASRGELDPGRLRTAALSWIISHPTLVRRFAPSEL*
Ga0070715_102241812	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPSLEHGVFEPEATASMGEAFEAACKQLQGAGRYQMVRKIVAKRIVAAARSGELDPVRLRTVALGWISAQVLPAG*
Ga0070715_105004471	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPATEHGAFEPEATAVMGEAFEAACKELDDAGKTEVVRKLVAERIIAAASRGELDPVCLRMAALSWIISHPSVAPRFAPSGL
Ga0099791_100122782	3300007255	Vadose Zone Soil	MPIDPSIEHHAFEPEATAAMGQAFEAACQQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALGWIISHPSLVRSFALGQL*
Ga0099793_100373353	3300007258	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIVSHPTLVRGFAPSEL*
Ga0099793_102059462	3300007258	Vadose Zone Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNAVRLRTAALNWIIVTQMLSAVSR*
Ga0099794_107804381	3300007265	Vadose Zone Soil	MPINSSIEHHALEPEATAALGEEIEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL*
Ga0099795_103551911	3300007788	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIVSHPTLVRRFASSEL*
Ga0099829_103014222	3300009038	Vadose Zone Soil	MPIDPSLEQGVFGPEATVAMGEAFEAACKELHGGGDPEVRKLMAKRIIAAASRGELDPVRLRAAALSGLSVIQISSAA*
Ga0099829_106180991	3300009038	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLLDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFALGQL*
Ga0099829_108992221	3300009038	Vadose Zone Soil	MPIDPSIEHSAFEPEATAAMGEAFEAACKELHDAGKAEVVRKLVAERIIAAASRGELDPVRLRTAALSWIISHPNVARSFALSEL*
Ga0099830_106769442	3300009088	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL*
Ga0099830_110434901	3300009088	Vadose Zone Soil	GAMPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVRLRAAALSWIIVTQASPAASR*
Ga0099828_113574161	3300009089	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVRLRAAALSWIIVTQASPAASR*
Ga0099828_115359551	3300009089	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLLDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL*
Ga0099792_100075163	3300009143	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAQVVRELIAERIIAAASRGELDPVRLRAVALSWIIVTQASPAVSR*
Ga0099792_103754992	3300009143	Vadose Zone Soil	MPIDPSLEHGVFEPEATAAMGEAFEAACKELHDVGQLQMVRKIVAGRIIAAARRGELDRARLRTAALSWIIVTQMSAAASR*
Ga0099792_104269321	3300009143	Vadose Zone Soil	MSIDPSLEQGVFGPEATAAMGEAFEAACKELHDVGQLQMVRKVIAQRIIAAARRGELDPVRFRTAALSWIIVTQMSSAASR*
Ga0099792_109672501	3300009143	Vadose Zone Soil	MPINPSIEHHAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIISHLTLVRGFAPSEL*
Ga0126374_108222242	3300009792	Tropical Forest Soil	MPIDPCLEQGVFEPDATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARTGELNPVRLRTAALNWIFVTQMLSAVPR*
Ga0126374_113968921	3300009792	Tropical Forest Soil	MPIDLSIELSAFEPEATAAMGEAFEAACEQLHEAGKAEGVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRRFAPSEL*
Ga0123355_108214582	3300009826	Termite Gut	MPLDPFLELGAFGPEATAAMGEAFEAACKELHDADKTEPVRKLIARRIIAAARGGELDAMRLRTAALGRPNVVRCFAMREH*
Ga0126380_101529132	3300010043	Tropical Forest Soil	MPIDPCLEHGAFGPEATEAMGEAFEAVCRELRDAGNAEGMRKLVAEQIIETASRGELDPVRLRTAVLSWILSRRDVARSFALSK*
Ga0126380_112067622	3300010043	Tropical Forest Soil	MSIDPSIEHGAFEPEATAAMAEAFEAACKELHDAGKTELVRKLVAERIIGAACRGELDPVRLRTAALSSILSLPNFGRCIALSES*
Ga0126380_118534811	3300010043	Tropical Forest Soil	SIEHGAFEPEATAAMGEAFEAACQELHDVGNVEGVRKLIAEQIIAAATRGELDPIRLRIAALSWIISQPNVARSFALGES*
Ga0126384_119978521	3300010046	Tropical Forest Soil	MSIDPCLEQGVFEPDATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARTGELNPVRLRAAALNWIIVTQMLSAVSC*
Ga0126384_120336712	3300010046	Tropical Forest Soil	MPINPSIEHHAFEPEATAAMGEAFEAACEQLHEAGKAEGVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRRFAPSEL*
Ga0126382_122605062	3300010047	Tropical Forest Soil	MPIDPSLEQGVFGPDAIEAMGEAFEAACKELHDIGELPMVRKVLAQRIIAAARRGELDQVRLRTAAL
Ga0123356_105251683	3300010049	Termite Gut	MPLDPFLELGAFGPEATAAMGEAFEAACKELHDADKTEPVRKLIARRIIAAARGGELDAMRLRTAALGRPNVVRYFAMREH*
Ga0099796_101072952	3300010159	Vadose Zone Soil	MPINPSIEHHAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIVSHTTLVRSFAPSKL*
Ga0099796_101705992	3300010159	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVRLRAAALSWIIVTQVSPAASC*
Ga0126370_103814513	3300010358	Tropical Forest Soil	MPINRSIEHHAFEPEATAAMGEAFEAACEQLHDAGKVEGVRKLLAKRIIAAASRGELDPGRLRTAALSWIISHPTLVRRFAPSEL*
Ga0126370_104867212	3300010358	Tropical Forest Soil	EHGAFGPEATAAMGEAFEAACKELHEVGRLAMVRKVIAQRVIEAACKGELDPVRLRTAALNWIIVTQMSSAVSR*
Ga0126370_109227911	3300010358	Tropical Forest Soil	MSIDPCLEQGVFEPDATTAMGEAFEAACEQLHDGGRLPMVREVVALRIIAAARTGELNPVRLRAAALNWIIVTQMLSAVSC*
Ga0126376_120178602	3300010359	Tropical Forest Soil	MPIDPSIEHHAFEPEATAAMGEAFEAACQQLHDAGEAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHP
Ga0126376_131507091	3300010359	Tropical Forest Soil	MPIDPSIENGVFEPEATAAMAEAFEAVCKELHDAGKAEVVRKLIAERIIGAASRGELDPVRLRTAALS
Ga0126372_101879591	3300010360	Tropical Forest Soil	MPINPSIEHHAFEPEATAAMGEAFEAACEQLHEAGKAEGVRKLLGERIIAAASRGELDPGRLRTAALSWIISHPTLVRRFAPSEL*
Ga0126372_106997921	3300010360	Tropical Forest Soil	MLAFFWGGAMSIDPCLEQGVFEPDATTAMGEAFEAACEELHHGGRLPIVREVVALRIIAAARTGELNPVRLRAAALNWIIVTQMLSAVSR*
Ga0126377_102677012	3300010362	Tropical Forest Soil	MPIDLSIENGAFEPEATAAMGEAFEAACQELHDVGNVEGVRKLIAEQIIAAATRGELDPIRLRIAALSWIISQPNVARSFALGES*
Ga0126377_108853111	3300010362	Tropical Forest Soil	MSINPCLEHGVFEPEATTAMCEAFEAACKELHEVGKLPTVRNCIAQRIIAAARSGELDPVRLRTGAISWIIVAQMSAAAASH*
Ga0126377_120406212	3300010362	Tropical Forest Soil	MLAFFWGGAMSIDPCLEQGVFEPDATTAMGEAFEAACEELHHGGRLPIVREVVALRIVAAARTGELNPARLRAAALNWIIVT
Ga0126377_126588591	3300010362	Tropical Forest Soil	MPIDPCLEHGVFEPEATTAMGEAFEAACKELHKVGQLQMVRNVLAKRIIATARGGELDRVRLRTAALNWIMAPRMSAAGSHRA*
Ga0126377_127397051	3300010362	Tropical Forest Soil	YGMGSAGVAAMPIDPSIENGVFEPEATAAMAEAFEAVCKELHDAGKAEVVRKLLAERIIAAASRGELDPILLRTAALSWIISHPTLVRRFAPSEL*
Ga0126379_104147582	3300010366	Tropical Forest Soil	MPIDPSIEHFAFEPEATAAMGEAFEAACKELHEVGELPMVRKVVAQRIIAAARRGELDSVRLRAAALSWIIVAQMSSAVSG*
Ga0126381_1030189631	3300010376	Tropical Forest Soil	MPLDSLIEHGAFGPEATAAMGEAFEAACKELRDADKTEPVRRLIARRIIAAARRGELDAVRLRIAALGSIIV
Ga0126383_101067645	3300010398	Tropical Forest Soil	MPIDLEHGAFEPEAIAAMGEAFKAACKELRDVGERELVRKLIAKRIVEAARRGELDPVRLRVMALRGLSVNETSPA
Ga0126383_102149124	3300010398	Tropical Forest Soil	MLVDPSIENGGFEPETTAAMGKAFEAACEELHEVGQLPMVRKIVTQRIVAAARSGELDPVRLRTAALRWIIVPQMSAAASH*
Ga0126383_104776471	3300010398	Tropical Forest Soil	VATSGFFWGGAVSIDPCLEQGVFEPEATTAMAEAFEAACEQLHDGGRLPMVREAVALRIVAAARTGELNPVRLRTAALNWIIVTQMLSAVSR*
Ga0126383_108377081	3300010398	Tropical Forest Soil	MPIDLEHGAFEPEAIAAMGEAFKAACKELRDIGERELVRKLIAKRIVAAARRGELDPVRLRAIALRGLSVNET
Ga0126383_121436972	3300010398	Tropical Forest Soil	MPIDPFIEHGAFEPEATAAMGEAFEAACKELHNAGNAEAVRKLIAEQIIAAANRGELDPVRLRMAALAE
Ga0124844_10621701	3300010868	Tropical Forest Soil	MPIDPSIENGVFEPEATAAMAEAFEAVCKELHDAGKAEVVRKLIAERIIGAASRGELDPVRLRTAALSWILSHPNVARSFALSEL*
Ga0137392_102160453	3300011269	Vadose Zone Soil	MTVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVLLRAAALSWIIVTQASPAASR*
Ga0137392_103631241	3300011269	Vadose Zone Soil	MPIDPSLEHGVFEPEATGAMGEAFEAACRELHGGGKPEVRKLIAQRIIAAARRGELDQVRLRTAALSWIIVAQM
Ga0137393_100634362	3300011271	Vadose Zone Soil	MPINPSIEHHAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSKL*
Ga0137393_111972973	3300011271	Vadose Zone Soil	MPVNPSLERGVFEPEATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVRLRAAALS
Ga0137389_100988212	3300012096	Vadose Zone Soil	MPIDPSIEHSAFEPEATAAMGEAFEAACKELHDAGTAEVVRKLVAERIIAAASRGELDPVRLRMAALSWIISHPNVARSFALSQL*
Ga0137389_101706491	3300012096	Vadose Zone Soil	MSIDPSLEQGVFGPEATAAMGEAFEAACKELHDVGQLQMVRKVIAQRIIAAARRGELDPVRLRTAALSWIIVTQMSSAASR*
Ga0137389_104913072	3300012096	Vadose Zone Soil	VPIDPSTEQGVFAPEATTALGEAFEAACKELHDGGEPEVRKLIAKRMIAAASRGELDPVRLRAAALSGLSVVQISSAA*
Ga0137389_115784761	3300012096	Vadose Zone Soil	MPIDPSIEQGAFEPEATAAMGEAFEATCKELHEIGQLEMVRKIVAQRIIAAARRGELDPVRLRMAALSWIIVTPMSPAASR*
Ga0137389_116848511	3300012096	Vadose Zone Soil	MPTDPSIEHAAFEPEATAAMGEAFEAACTELHDAGKAEVVRKLVAERIIAAATRGELDPVRLRTAALSWIISHPNVARS
Ga0137388_100505872	3300012189	Vadose Zone Soil	MPIDPSIEHGAFEPEATAAMGEAFEAACKELHDAGTAEVVRKLVAERIIAAASRGELDPVRLRMAALSWIISHPNVARSFALSQL*
Ga0137388_106517041	3300012189	Vadose Zone Soil	MPIDRSIEEHGAFEPEATAAMGEAFEAACKDLHDAGKAEVVRKLIAERIIAAASRGELDPVRLRRAALGWIISHPNFARSFVLSEL*
Ga0137388_108068112	3300012189	Vadose Zone Soil	MPIDPSLEHGVFGPEATAAMGEAFEAACKELHDVGQLQMVRKIVAGRIIAAARRGELDPVRLRTAALSWIIVTQMSAAASR*
Ga0137388_110789322	3300012189	Vadose Zone Soil	MPTDPSIEHAAFEPEATAAMGEAFEAACTELHDAGKAEVVRKLVAERIIAAATRGELDPVRLRTAALSWIISHPNVARSFALSEL*
Ga0137383_104044682	3300012199	Vadose Zone Soil	MPIDPSLEQGVFGPGAIEVMGEAFEAACKELHDIGQLPTVRKVLAQRTIAAARRASLTQFAYERRR*
Ga0137363_101502142	3300012202	Vadose Zone Soil	MPIDPSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALGWIISHPSLVRSFALGQL*
Ga0137363_103635941	3300012202	Vadose Zone Soil	MPIDRSIEEHDAFEPEATAAMGEAFEAACKELHDAGKAEAVRKLIAERIIAAASRGELDPVRLRRAALGWIISHPNFARSFVLSEL*
Ga0137363_104079311	3300012202	Vadose Zone Soil	SIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLVAERIIAAASRGELDPGRLRTAALSWIVSHPTLVRRFASSEL*
Ga0137399_101855022	3300012203	Vadose Zone Soil	MPIDPSIEHRAFEPEATAAMGQAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALGWIISHPSLVRSFALGQS*
Ga0137399_110407031	3300012203	Vadose Zone Soil	SIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLVAERIIAAASRGELDPGRLRTAALSWIVSHPTLVRGRARGEL*
Ga0137362_104567422	3300012205	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLVAERIIAAASRGELDPGRLRTAALSWIVSHPTLVRRFASSEL*
Ga0137381_114633601	3300012207	Vadose Zone Soil	PIDLSIEHGAFEPEATAAMGEAFEAACKELHHAGKAEVVRKLVAEQIIAAASRGELDPVRLRTAALGWIISHPSVARSFALSEL*
Ga0137378_113086001	3300012210	Vadose Zone Soil	MPIDPSLEQGVFEPDAIEAMGEAFEAACKELHDIGELPMVRKVLAQQIIAAARRGELDQVRLRTAALSWIIVTQMSSSASR*
Ga0137377_100412137	3300012211	Vadose Zone Soil	MPIDLSIEHGAFEPEATAAMGEAFEAACKELHHAGKAEVVRKLVAEQIIAAASRGELDPVRLRTAALGWIISHPSVARSFALSEL*
Ga0137377_112292372	3300012211	Vadose Zone Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAASSGELNPVRLRTAALNWIIVTQMLPAVSR*
Ga0137360_100762303	3300012361	Vadose Zone Soil	MPIDRSIKEHDAFEPEATAAMGEAFEAACKELHDAGKAEAVRKLIAERIIAAASRGELDPVRLRRAALGWIISHPNFARSFVLSEL*
Ga0137360_107100882	3300012361	Vadose Zone Soil	MPSDPSLERGVFEPEATAAMGQAFDAACNGLHDAGKAELCELIAKRIVAAAGEGELDPGRLRAAGLGWIVVTQVPAAASH*
Ga0137360_116229501	3300012361	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAEVVRQLIAERIIAAASRGELDPVRLRAAALSWIIVTQVSPAASR*
Ga0137361_100966572	3300012362	Vadose Zone Soil	MPIDPSIEHHAFEPEATAAMGEAFEAACQQLHDAGKVEVVRKLLAERIIAAASRGELDPILLQTAALSWIISHPTLVRRFALGASPP*
Ga0137361_110417211	3300012362	Vadose Zone Soil	LALTFSGVAAMPIDPSLEQGAFEPEATAAMGEAFEAACKELHDIGQLQMVRKVLAQRIVAAARRGEIDPVRLRTAALSWIIVTQMSSAASR*
Ga0137390_111749421	3300012363	Vadose Zone Soil	MPIDPSDMAPFEPEATAPMGEAFEAACKKLHDAGKGEMVRKLVAERIIAAASRGELDPVRLRTAALSWIISHPNVARSFALSEL*
Ga0137398_101072692	3300012683	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSEL*
Ga0137396_101287422	3300012918	Vadose Zone Soil	MPIDPSIEHRAFEPEATAAMGQAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALGWIISHPSLVRSFALGQL*
Ga0137359_103478431	3300012923	Vadose Zone Soil	MPIDPSLEHGVFEPEATAVMGEAFEAACRELHGGGDPEVRKLIAKRMIVAARGGELDPVRLRAAALSGLSVIQISSAASR
Ga0137413_101065063	3300012924	Vadose Zone Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNPVRLRTAALNWIIVTQMLSAVSR*
Ga0137416_107361071	3300012927	Vadose Zone Soil	MPINPSIDNPSTEHHAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIVSHTTLVRSFAPSKL*
Ga0137416_109116421	3300012927	Vadose Zone Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNPVRLRTAA
Ga0137407_121032221	3300012930	Vadose Zone Soil	SSPVSGTEALGVGAMPIDPSLEQGVFEPDAIEAMGEAFEAACKELHDIGELPMVRKVLAQQIIAAARRGELDQVRLRTAALSWIIVTQMSSSASR*
Ga0126375_119038072	3300012948	Tropical Forest Soil	MPIDPCLEHGVFEPEATTAMGEAFEAACKELHKVGQLQMVRNVLAKRIIATARGGELDRVRLRAAALNWIMAPECRPQVRTELK
Ga0126369_104253722	3300012971	Tropical Forest Soil	MPINRSIEHHAFEPEATAAMGEAFEAACEQLHDAGKAEGVRKLLAERIIAAASRGELDPIRLRTAALSWIINHPTLVRRFAPSES*
Ga0126369_110753422	3300012971	Tropical Forest Soil	MPVDPCLERGIFEPEVTAAMGEAFEAACKELHEVGQLPTVRNFIAQRIIAAVRRGELDPVRLRTAAISWIIVAPNVGRQSFALSPL*
Ga0137418_100417861	3300015241	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIVSHTTFVRSFAPSKL*
Ga0137418_110153562	3300015241	Vadose Zone Soil	ATIDPYVERGVFEPEATAAMGEALEAACKELHGVGQLQMVRKVIAGRIIAAARRGELDPVRLRTAALNWIIVTQMSAAASR*
Ga0137409_100471291	3300015245	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL*
Ga0137409_106224391	3300015245	Vadose Zone Soil	MPINPSIDNPSTEHHVFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIVSHTTFVR
Ga0137403_104282092	3300015264	Vadose Zone Soil	MPIDLSIEHGAFEPEATAAMGEAFEAACKELHHAGKAEVVRKLVAEQIIAAASRGELDPVRLRTAALGWIISHPSVARS
Ga0187783_105762472	3300017970	Tropical Peatland	MPINTTLEHSAFEPEATAAMGEAFEAACKSLHDAGKAEVVRKLVAERIIAAARRGELDPARLRTAALSWIISHPNVARGFALSK
Ga0187783_107249152	3300017970	Tropical Peatland	MSGFILVRPILLILKWRGRVFSGGGAMPIDPCLERGAFDAEATTAMGEAFEAACKELHDVGRLRTVRNVIAQQIIAAAGRGELDPVRLRTAALSWIIVAQMSPAVSR
Ga0187783_112158542	3300017970	Tropical Peatland	SIENGAFEPEATAAMGEAFEAVCKELHDAGKAEMVRKLIAEQIIGAASRGELDPVRLRRAALSWIVSHPEIARGFALSELQSAKQSRFVSPAG
Ga0187782_104833292	3300017975	Tropical Peatland	MPIDPSIEHGAFEPEATAAMGEAFEAACKELHDAGKAELIRKLIAKQIIGAASRGELDPVRLRTTALGWILSHPEVAHSFALSERCPL
Ga0187765_109095282	3300018060	Tropical Peatland	GSAGVVAMPIDPSIEHPSIEHSAFEPEATAAMGEAFEAVCKELHDAGKAEAVRELIAEQIIGAASKGELDPARLRKVALSWIFSHPEITRSFALSEL
Ga0210399_103945353	3300020581	Soil	MPIDPATEHGAFEPEATAVMGEAFEAACKELHDAGKIEVVRKLVAERIIAAASRGELDPVCLRTAALSWIISHPSVARRFAARGL
Ga0210399_113745241	3300020581	Soil	MPIDSSLEKGVFEPDATSVMGKAFEAACRELQDVGQREMVRKVIAQRIIAAVRNGEIDPVRLRTAALRWISVAQMSPAA
Ga0179596_103476491	3300021086	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL
Ga0210400_100579534	3300021170	Soil	VAAMPIDPATEHGAFEPEATAVMGEAFEAACKELDDAGKTEVVRKLVAERIIAAASRGELDPVCLRMAALSWIISHPSVARRFAPSGL
Ga0210400_101519482	3300021170	Soil	MPIGPSIEHRVFEPEATAAMGEAFEAACKELHDAGKDEVVRKLVPERIIAAANRGELDPVRPRAATLSGLPLTKISPAASARSASFHRDSAKDQS
Ga0210400_102352622	3300021170	Soil	MPIDSSLEDGVFEPEATEAMGEAFEAACRELQDVGRRKIVRKVVAQRIITAARRGELDPVGLRTAALSWISVAQMSPAA
Ga0210400_103682612	3300021170	Soil	MPINPWIELGVFGPEATAAMGQAFEAACKELHDAGEPEVPRILIPKRIITAAGRGELDPVLLRTVTLIGLSVPTRPM
Ga0210400_112768111	3300021170	Soil	MPIDPYLEQGVFETDATTSMSEAFEAACEELHDGGRLAMVREVVALRIITAARSGELNPVRLRTAALNWIIVTQMLSAVS
Ga0210402_100128446	3300021478	Soil	MPRDLSLEHCAFEPEATAAMGEAFEAACKELHNAGQQLIIRKVLAQQIIVAARSGELDPVRLRKAALSWITSHPHAARNPR
Ga0242654_104100922	3300022726	Soil	PEATSVMGKAFEAACRELQDVGQREMVRKVIAQRIIAAVRNGEIDPVRLRTAALRWISVAQMSPAA
Ga0207685_102341391	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPIDPSLEHGVFEPEATASMGEAFEAACKQLQGAGRYQMVRKIVAKRIVAAARSGELDPVRLRTVALGWISAQVLPAG
Ga0209240_12349931	3300026304	Grasslands Soil	VPFDPSLERGVFEPEATAAMGEAFEAACNHLHDAGKAELVRQLIAERIIAAASRGELDPVRLRAAALSWIIVTQVSPAASR
Ga0209131_13456782	3300026320	Grasslands Soil	MPIDPSLERGVFEPEATGAMGEAFEAACKELHGVGQLRMVRKVIAGRIIAAARRGELDPVRLRTAALSWIIVTQMSSAASH
Ga0257170_10113003	3300026351	Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIVSHPTLVRGFAPSEL
Ga0257149_10008502	3300026355	Soil	MPIDPSLEQGAFGPEATAAMDEAFGAACEELHDTCRREMVRKVVAQRIIAAARRGELDPVRIRTAALSWIVVAQMSSAASR
Ga0257152_10320791	3300026369	Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAAL
Ga0257167_10778402	3300026376	Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNPVRLRTAAL
Ga0257147_10694621	3300026475	Soil	HAFEPEATAAMGEAFEAACHQLHDAGKAEVVRKLLAERIIAAASRGELDPGRLRTAALSWIVSHTTLVRSFAPSKL
Ga0257153_11100062	3300026490	Soil	MPIDSSLEQGAFGPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVR
Ga0257157_10229461	3300026496	Soil	DPYLEQGVFETGATTSMSEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNAVRLRTAALNWIIVTQMLSAVSR
Ga0257168_11462492	3300026514	Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSW
Ga0179587_102269992	3300026557	Vadose Zone Soil	SMPINSSIEHHAFEPEATAAMGEAFEAACMQLHDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSEL
Ga0209076_11295752	3300027643	Vadose Zone Soil	MSIDPCLEQGVFEPEATTAMGEAFEAACEELHDGGRLPMVREVVALRIIAAARSGELNAVRLRTAALNWIIVTQMLSAVSR
Ga0209465_100362673	3300027874	Tropical Forest Soil	MSIDPSIEHGAFEPEATAAMAEAFEAACKELHDAGKTELVRKLVAERIIGAACRGELDPVRLRTAALSSILSLPNFGRCIALSES
Ga0209283_108833041	3300027875	Vadose Zone Soil	MPINSSIEHHAFEPEATAAMGEAFEAACKQLLDAGKAEVVRKLLAERIIAAASRGELDPIRLRTAALSWIISHPTLVRSFAPSGL
Ga0209488_101476762	3300027903	Vadose Zone Soil	MPIDRSIEEHGAFEPEATAAMGEAFEAACKDLHDAGKAEVVRKLIAERIIAAASRGELDPIRLRTAALGWIISHPNFARSFVLSEL
Ga0209488_101766793	3300027903	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHDAGKAQVVRELIAERIIAAASRGELDPVRLRAVALSWIIVTQASPAVSR
Ga0209488_107626331	3300027903	Vadose Zone Soil	MPVNPSLERGVFEPDATAAMGEAFEAACNHLHHAGKAEVVRKLIAERIIAAASTGELDPVRLRAAALSWIIVTQVSPAASC
Ga0137415_110667802	3300028536	Vadose Zone Soil	MPVNPSLERGVFEPEATAAMGEAFEAACNHLHDAGKAEVVRELIAERIIEAASAGELDPVRLRAAALKLDYSHPS
Ga0138301_17686061	3300031022	Soil	MPIDPATEHGAFEPEATAVMGEAFEAACKELDDAGKTEVVRKLVAERIIAAASRGELDPVCLRMAALSWIISHPSVAPRFA
Ga0310915_109528122	3300031573	Soil	MPIDLSLEHGAFEPEATAAMGEAFEAACRALHGAGKAEAVRKLIAERIIAAASTGELDPARLRIVALSWIISHSNVTHGFALSK
Ga0307476_102635031	3300031715	Hardwood Forest Soil	MLIDSCLEHGAFGPEATEAMGEAFEAVCRELHGAGNAEGVRNLIAEQIIGAASRGELDPVRLRTAALSWILGRRDVARSLAPSK
Ga0307474_108501522	3300031718	Hardwood Forest Soil	MPLDPFLKHGAFGPEATSAMGEAFEAACKELHDADQTEPVRKLIARRIIAAARRGELDAVRLRTAAQGRIIVTQMSSAVLR
Ga0318524_104347671	3300032067	Soil	LERGIFEPEVTAAMGEAFEAACKKLHEVGQLPTVRNFIAQRIIAAVRRGELDPVRLRTAAISWIIVAPNVGRRSFALSPL
Ga0318525_103229031	3300032089	Soil	MPVDPCLERGIFEPEVTAAMGEAFEAACKELHEVGQLPTVRNFIAQRIIAAVRRGELDPVRLRTAAISWIMVAPNVGRRSFALSPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F047338

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences