NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047584

Metagenome / Metatranscriptome Family F047584

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047584
Family Type Metagenome / Metatranscriptome
Number of Sequences 149
Average Sequence Length 42 residues
Representative Sequence FAALTVSVDKALAYFATHPETVLGLFGRYCEESGLELKQAA
Number of Associated Samples 107
Number of Associated Scaffolds 149

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 8.05 %
% of genes near scaffold ends (potentially truncated) 87.25 %
% of genes from short scaffolds (< 2000 bps) 91.95 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.772 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(20.805 % of family members)
Environment Ontology (ENVO) Unclassified
(26.174 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(40.940 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.93%    β-sheet: 0.00%    Coil/Unstructured: 55.07%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 149 Family Scaffolds
PF00072Response_reg 3.36
PF13358DDE_3 2.68
PF01609DDE_Tnp_1 2.01
PF04055Radical_SAM 1.34
PF13751DDE_Tnp_1_6 1.34
PF10282Lactonase 1.34
PF01051Rep_3 1.34
PF13191AAA_16 0.67
PF01420Methylase_S 0.67
PF00496SBP_bac_5 0.67
PF04392ABC_sub_bind 0.67
PF01145Band_7 0.67
PF13426PAS_9 0.67
PF00122E1-E2_ATPase 0.67
PF05681Fumerase 0.67
PF00583Acetyltransf_1 0.67
PF05016ParE_toxin 0.67
PF00534Glycos_transf_1 0.67
PF13482RNase_H_2 0.67
PF13610DDE_Tnp_IS240 0.67
PF05598DUF772 0.67
PF13439Glyco_transf_4 0.67
PF09130DUF1932 0.67
PF00578AhpC-TSA 0.67
PF03050DDE_Tnp_IS66 0.67
PF00892EamA 0.67
PF01927Mut7-C 0.67
PF14319Zn_Tnp_IS91 0.67
PF09863DUF2090 0.67
PF13565HTH_32 0.67
PF13701DDE_Tnp_1_4 0.67
PF07238PilZ 0.67
PF02371Transposase_20 0.67
PF00848Ring_hydroxyl_A 0.67
PF00211Guanylate_cyc 0.67
PF16927HisKA_7TM 0.67
PF13517FG-GAP_3 0.67
PF07592DDE_Tnp_ISAZ013 0.67
PF00528BPD_transp_1 0.67
PF01408GFO_IDH_MocA 0.67
PF13551HTH_29 0.67
PF00464SHMT 0.67
PF00239Resolvase 0.67
PF11794HpaB_N 0.67
PF13613HTH_Tnp_4 0.67
PF03631Virul_fac_BrkB 0.67
PF12773DZR 0.67
PF00296Bac_luciferase 0.67
PF13384HTH_23 0.67
PF00413Peptidase_M10 0.67
PF12760Zn_Tnp_IS1595 0.67
PF02738MoCoBD_1 0.67
PF01192RNA_pol_Rpb6 0.67
PF08241Methyltransf_11 0.67
PF00857Isochorismatase 0.67
PF04545Sigma70_r4 0.67
PF01797Y1_Tnp 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 149 Family Scaffolds
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 2.01
COG3293TransposaseMobilome: prophages, transposons [X] 2.01
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 2.01
COG5421TransposaseMobilome: prophages, transposons [X] 2.01
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 2.01
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 2.01
COG4638Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunitInorganic ion transport and metabolism [P] 1.34
COG5527Protein involved in initiation of plasmid replicationMobilome: prophages, transposons [X] 1.34
COG0112Glycine/serine hydroxymethyltransferaseAmino acid transport and metabolism [E] 0.67
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.67
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 0.67
COG0732Restriction endonuclease S subunitDefense mechanisms [V] 0.67
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.67
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.67
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.67
COG1656Uncharacterized conserved protein, contains PIN-related Mut7-C RNAse domainGeneral function prediction only [R] 0.67
COG1758DNA-directed RNA polymerase, subunit K/omegaTranscription [K] 0.67
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.67
COG1951Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domainEnergy production and conversion [C] 0.67
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.67
COG20843-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenaseLipid transport and metabolism [I] 0.67
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.67
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.67
COG2216K+ transport ATPase, ATPase subunit KdpBInorganic ion transport and metabolism [P] 0.67
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 0.67
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.67
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.67
COG3436TransposaseMobilome: prophages, transposons [X] 0.67
COG3547TransposaseMobilome: prophages, transposons [X] 0.67
COG5549Predicted Zn-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 0.67


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms65.77 %
UnclassifiedrootN/A34.23 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000550|F24TB_10191823All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300000787|JGI11643J11755_11773129All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Thermodesulfobacteria → Thermodesulfobacteriales → Thermodesulfobacteriaceae → Thermodesulfatator → Thermodesulfatator indicus1048Open in IMG/M
3300002120|C687J26616_10016264All Organisms → cellular organisms → Bacteria2856Open in IMG/M
3300002899|JGIcombinedJ43975_10020763All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300002908|JGI25382J43887_10288389All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300004633|Ga0066395_10835334Not Available555Open in IMG/M
3300005294|Ga0065705_10232044All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300005294|Ga0065705_10504675Not Available771Open in IMG/M
3300005332|Ga0066388_101293771All Organisms → cellular organisms → Bacteria1256Open in IMG/M
3300005332|Ga0066388_101581487All Organisms → cellular organisms → Bacteria1152Open in IMG/M
3300005332|Ga0066388_102962974All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium868Open in IMG/M
3300005332|Ga0066388_108117781All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium524Open in IMG/M
3300005446|Ga0066686_11038079Not Available530Open in IMG/M
3300005540|Ga0066697_10355810All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis852Open in IMG/M
3300005552|Ga0066701_10137741All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1460Open in IMG/M
3300005557|Ga0066704_10310713All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300005559|Ga0066700_10033154All Organisms → cellular organisms → Bacteria3041Open in IMG/M
3300005713|Ga0066905_101026293All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300005764|Ga0066903_101414280Not Available1308Open in IMG/M
3300005764|Ga0066903_104307462Not Available761Open in IMG/M
3300005764|Ga0066903_104574786Not Available737Open in IMG/M
3300006032|Ga0066696_10229052All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300006041|Ga0075023_100041632All Organisms → cellular organisms → Bacteria1403Open in IMG/M
3300006797|Ga0066659_10396506All Organisms → cellular organisms → Bacteria1084Open in IMG/M
3300006844|Ga0075428_100284718All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D051778Open in IMG/M
3300006844|Ga0075428_100376480All Organisms → cellular organisms → Bacteria1522Open in IMG/M
3300006844|Ga0075428_101851521All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium627Open in IMG/M
3300006845|Ga0075421_101100556Not Available893Open in IMG/M
3300006852|Ga0075433_11551734All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300006854|Ga0075425_100676614All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1185Open in IMG/M
3300006880|Ga0075429_101677461All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium552Open in IMG/M
3300007076|Ga0075435_101611066All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300009012|Ga0066710_100580030All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina1699Open in IMG/M
3300009038|Ga0099829_10496025All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300009038|Ga0099829_10588203All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera925Open in IMG/M
3300009100|Ga0075418_10154637Not Available2441Open in IMG/M
3300009100|Ga0075418_10236209All Organisms → cellular organisms → Bacteria1946Open in IMG/M
3300009100|Ga0075418_12433429All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella571Open in IMG/M
3300009100|Ga0075418_12899028Not Available523Open in IMG/M
3300009137|Ga0066709_101137425All Organisms → cellular organisms → Bacteria1149Open in IMG/M
3300009137|Ga0066709_102082179Not Available785Open in IMG/M
3300009137|Ga0066709_103069235Not Available611Open in IMG/M
3300009137|Ga0066709_103472504Not Available572Open in IMG/M
3300009147|Ga0114129_10272213All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2265Open in IMG/M
3300009147|Ga0114129_10498334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1591Open in IMG/M
3300009147|Ga0114129_10588370All Organisms → cellular organisms → Bacteria1443Open in IMG/M
3300009147|Ga0114129_12964728All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium559Open in IMG/M
3300009156|Ga0111538_10291419Not Available2065Open in IMG/M
3300009162|Ga0075423_10409286Not Available1424Open in IMG/M
3300009176|Ga0105242_12000322Not Available622Open in IMG/M
3300009553|Ga0105249_12139822All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium632Open in IMG/M
3300009691|Ga0114944_1126670All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300009691|Ga0114944_1192315Not Available813Open in IMG/M
3300009789|Ga0126307_11599071Not Available529Open in IMG/M
3300009801|Ga0105056_1057147Not Available558Open in IMG/M
3300009817|Ga0105062_1009908All Organisms → cellular organisms → Bacteria1487Open in IMG/M
3300010039|Ga0126309_11251297Not Available512Open in IMG/M
3300010046|Ga0126384_10382840All Organisms → cellular organisms → Bacteria1182Open in IMG/M
3300010047|Ga0126382_10553128All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium937Open in IMG/M
3300010047|Ga0126382_12193176All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio → Micavibrio aeruginosavorus531Open in IMG/M
3300010047|Ga0126382_12304438Not Available521Open in IMG/M
3300010047|Ga0126382_12336016Not Available518Open in IMG/M
3300010359|Ga0126376_11834143Not Available645Open in IMG/M
3300010362|Ga0126377_11631771All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300010366|Ga0126379_10098469Not Available2593Open in IMG/M
3300010366|Ga0126379_10733774All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300010398|Ga0126383_12089638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin222653Open in IMG/M
3300010398|Ga0126383_13688109All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300012096|Ga0137389_11366262Not Available603Open in IMG/M
3300012096|Ga0137389_11786492All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300012199|Ga0137383_10673165Not Available756Open in IMG/M
3300012199|Ga0137383_10753079All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300012199|Ga0137383_10767857All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300012199|Ga0137383_10876220Not Available655Open in IMG/M
3300012202|Ga0137363_11813299All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6503Open in IMG/M
3300012205|Ga0137362_10822766Not Available795Open in IMG/M
3300012206|Ga0137380_11409154Not Available582Open in IMG/M
3300012206|Ga0137380_11526432All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium552Open in IMG/M
3300012207|Ga0137381_11556437Not Available552Open in IMG/M
3300012209|Ga0137379_10209697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Ae2-Chloro-G11862Open in IMG/M
3300012209|Ga0137379_10302219Not Available1511Open in IMG/M
3300012349|Ga0137387_10467132Not Available916Open in IMG/M
3300012351|Ga0137386_10400036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4989Open in IMG/M
3300012351|Ga0137386_10558068Not Available824Open in IMG/M
3300012351|Ga0137386_10985666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4600Open in IMG/M
3300012356|Ga0137371_11224092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia559Open in IMG/M
3300012359|Ga0137385_10152923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_42029Open in IMG/M
3300012361|Ga0137360_11487645All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter → Cystobacter ferrugineus581Open in IMG/M
3300012362|Ga0137361_10450256Not Available1182Open in IMG/M
3300012363|Ga0137390_10559819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-11114Open in IMG/M
3300012391|Ga0134035_1180378All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium684Open in IMG/M
3300012469|Ga0150984_118784098All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300012477|Ga0157336_1028127All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300012685|Ga0137397_10323367Not Available1150Open in IMG/M
3300012923|Ga0137359_11321641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4609Open in IMG/M
3300012929|Ga0137404_10067565Not Available2793Open in IMG/M
3300012929|Ga0137404_11699424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4586Open in IMG/M
3300012971|Ga0126369_12614897All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6589Open in IMG/M
3300012975|Ga0134110_10184845All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300013306|Ga0163162_11507588Not Available766Open in IMG/M
3300014154|Ga0134075_10057041All Organisms → cellular organisms → Bacteria1620Open in IMG/M
3300016319|Ga0182033_11641116Not Available582Open in IMG/M
3300016341|Ga0182035_10203970All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1566Open in IMG/M
3300016371|Ga0182034_11174569All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300016445|Ga0182038_10968331Not Available752Open in IMG/M
3300018031|Ga0184634_10110485All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1208Open in IMG/M
3300018084|Ga0184629_10028038All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2410Open in IMG/M
3300021560|Ga0126371_13247148All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300022563|Ga0212128_10323491All Organisms → cellular organisms → Bacteria964Open in IMG/M
3300025149|Ga0209827_10218274Not Available2004Open in IMG/M
3300025149|Ga0209827_10394105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus2105Open in IMG/M
3300025149|Ga0209827_11467346Not Available695Open in IMG/M
3300026118|Ga0207675_100268307All Organisms → cellular organisms → Bacteria1656Open in IMG/M
3300026118|Ga0207675_100576221All Organisms → cellular organisms → Bacteria1127Open in IMG/M
3300026296|Ga0209235_1160833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4873Open in IMG/M
3300027577|Ga0209874_1044370All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1172Open in IMG/M
3300027846|Ga0209180_10577357All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300027873|Ga0209814_10066019All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300027873|Ga0209814_10226360All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300027873|Ga0209814_10232682All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300027882|Ga0209590_10206837Not Available1242Open in IMG/M
3300027903|Ga0209488_10737008Not Available703Open in IMG/M
3300027952|Ga0209889_1038732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1021Open in IMG/M
3300028587|Ga0247828_10043619Not Available1907Open in IMG/M
3300028597|Ga0247820_10474591All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300028796|Ga0307287_10362040Not Available547Open in IMG/M
3300028828|Ga0307312_10898676All Organisms → cellular organisms → Bacteria → Proteobacteria587Open in IMG/M
3300030006|Ga0299907_10593940All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae862Open in IMG/M
3300030830|Ga0308205_1002005All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella1584Open in IMG/M
3300030902|Ga0308202_1125634Not Available552Open in IMG/M
3300030989|Ga0308196_1057499All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300031123|Ga0308195_1063963Not Available558Open in IMG/M
3300031543|Ga0318516_10396974All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria795Open in IMG/M
3300031744|Ga0306918_11470023Not Available521Open in IMG/M
3300031781|Ga0318547_10409160Not Available833Open in IMG/M
3300031910|Ga0306923_10107159All Organisms → cellular organisms → Bacteria3159Open in IMG/M
3300031942|Ga0310916_11427561All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6566Open in IMG/M
3300032001|Ga0306922_10255976All Organisms → cellular organisms → Bacteria → Proteobacteria1882Open in IMG/M
3300032001|Ga0306922_10540530All Organisms → cellular organisms → Bacteria1239Open in IMG/M
3300032001|Ga0306922_12038381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium558Open in IMG/M
3300032068|Ga0318553_10220511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer990Open in IMG/M
3300032174|Ga0307470_11347651All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300032261|Ga0306920_100451721All Organisms → cellular organisms → Bacteria1910Open in IMG/M
3300032261|Ga0306920_101793480Not Available866Open in IMG/M
3300032261|Ga0306920_103349428All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300034643|Ga0370545_088593Not Available658Open in IMG/M
3300034660|Ga0314781_050508Not Available745Open in IMG/M
3300034666|Ga0314788_101705All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi647Open in IMG/M
3300034669|Ga0314794_007073All Organisms → cellular organisms → Bacteria1494Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.81%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere14.09%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.05%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.37%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.37%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.70%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs4.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.68%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.01%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.34%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.34%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.34%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.34%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.67%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.67%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300002120Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2EnvironmentalOpen in IMG/M
3300002899Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)EnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009691Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2EnvironmentalOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009801Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012391Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012477Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610Host-AssociatedOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300025149Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes)EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300027577Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027952Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030830Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030902Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030989Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031123Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034660Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034666Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034669Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F24TB_1019182313300000550SoilMLTASVDKALAYFAMHSETVLCLFGLYCEESGLALKQAA*
JGI11643J11755_1177312923300000787SoilMNVSYTLVSTDKALAYFAAHPEMVLDLFGLYCKESAFELKQVA*
C687J26616_1001626413300002120SoilIIVSVDKALAYFAQQADAVLGLFGLYCREVGLAK*
JGIcombinedJ43975_1002076333300002899SoilLRNNSNKYFKEFATLTVSVDQALAYFATHPEEVLGLFGRYCEES
JGI25382J43887_1028838923300002908Grasslands SoilKYFKEFIALTVSVDKALAYFATHPDTVLGLFGRYCEESGLALKQAA*
Ga0066395_1083533423300004633Tropical Forest SoilEFIQLTVSVDKALAYFAMHPDTVLGLFGRYCEESGLELKQAA*
Ga0065705_1023204433300005294Switchgrass RhizosphereCKALVELTVSVEKALAYGATPPETVLGLFGRYCEESGLELKQAA*
Ga0065705_1050467523300005294Switchgrass RhizosphereFAVLTASVDKALAYFATHSETVLCLFGLYCEESGLALKQAA*
Ga0066388_10129377113300005332Tropical Forest SoilLSDSDKLSDQYFEEFALLTVSVDKALAYFATHPDTVLGLFGLYCEESGLTLKQAA*
Ga0066388_10158148743300005332Tropical Forest SoilFKEFAALTVSVEKALAYFATHPDTVLGLFGRYCEESGLELKQAA*
Ga0066388_10296297423300005332Tropical Forest SoilEEFALLTVSVDKALAYFATHPETVLGLFGLYCEESGLTLKQAA*
Ga0066388_10811778123300005332Tropical Forest SoilLALTVAVDKALAYFATHPDTVLGLFGRYCEESGLGLKQAA*
Ga0066686_1103807913300005446SoilTHNKYFKEFAAVVVSVDKALAYFAAHPEMVLDLFGLYCKESDFALKQAA*
Ga0066697_1035581023300005540SoilELTVSVEKALVYFTTHPDTVFGLFGRYCEESGLELKQAA*
Ga0066701_1013774113300005552SoilSVDKALAYFATHPEMVLGLFGLYCEESGFELKQAA*
Ga0066704_1031071323300005557SoilVSRFKWILALTVSVEKALAYFATPPEEMVSLFGRYCEESGLELKQVA*
Ga0066700_1003315483300005559SoilKYFKEFVELTVSVEKALVYFTTHPDTVFGLFGRYCEESGLELKQAA*
Ga0066905_10102629323300005713Tropical Forest SoilKEVAAVVVSADKALAYFAAHPEMVLELLGLYCKESAFELKQVA*
Ga0066903_10141428013300005764Tropical Forest SoilYFKEFLALTVSVDKALAYFATHPDTVLGLFGRYCEDSGLELKQAA*
Ga0066903_10430746233300005764Tropical Forest SoilVSVEKALAYFAAHPDTVLGLFGLYCEESGLELKQAA*
Ga0066903_10457478613300005764Tropical Forest SoilMALTVSVDKALAHCVTTPDMPVGLFGLYCEASGWERKQAA*
Ga0066696_1022905213300006032SoilGAVEKALAYFATHPETVLGLFGRYCEESGLELAQAA*
Ga0075023_10004163213300006041WatershedsNKYFKEFAELTVSVEKALASFATHSEILLGLFGLSCEESGLELKQAA*
Ga0066659_1039650623300006797SoilLLTVSVDKALVYFATHPETVLGLFGLYCEESGLALKQAA*
Ga0075428_10028471813300006844Populus RhizosphereADKALAYFAAHPEMVLELLGLYCKESAFELKQVA*
Ga0075428_10037648013300006844Populus RhizosphereVSVEKALAYFATHPDTVFGLFGRYCEESGVELQQAA*
Ga0075428_10185152133300006844Populus RhizosphereFKEFAALTVSVDKALAYFATHPDTVLALFGLYCEESDLELKQAA*
Ga0075421_10110055623300006845Populus RhizosphereLTVSVEKALAYFATHPDTVLGLFGRYCKESGLELQRAA*
Ga0075433_1155173423300006852Populus RhizosphereATYNKYFKEFAAVVISADKALVYFAAHPEMVLELLRLYCKESAFELKQVA*
Ga0075425_10067661423300006854Populus RhizosphereVLTASVDKALVYFATHSETVLCLFGLYCEESGLALKQAA*
Ga0075429_10167746133300006880Populus RhizosphereTLTVSVDQALADFATHPEEVLGLFGRYCEESGLELKQAA*
Ga0075435_10161106623300007076Populus RhizosphereVDKALASFATHPDTVLGLFGLYCEESGLVLKQAA*
Ga0066710_10058003013300009012Grasslands SoilNKYFKEFAELTVSVEKALAYFATHSETVLGLFGRYCEESGLELKQAA
Ga0099829_1049602513300009038Vadose Zone SoilKEFAAMTVSVEKALAYFATHPETVFGLFGRYCEESGLELKQAA*
Ga0099829_1058820323300009038Vadose Zone SoilTVSVDKALAYVAVHLETVSGLFGLYCQESGLELKQAA*
Ga0075418_1015463733300009100Populus RhizosphereHNKYFKEFATLTVSVDQALAYFATHSKEVLGLFGRYCEESGLELKQAA*
Ga0075418_1023620913300009100Populus RhizosphereFKEFIVLTVSVDKALAYFATHPDTVLGLFGRYCEESGLKLKQAA*
Ga0075418_1243342923300009100Populus RhizosphereVALTVSVEKALAYFATHPEEIVSLFGRYCEESGLELKQVA*
Ga0075418_1289902813300009100Populus RhizosphereFKEFAALTVSVEKALAYFATHPDTVLDLFGCYCEESGLELQQAA*
Ga0066709_10113742533300009137Grasslands SoilVELTVSVEKALAYFATHPDTVFGLFGRYCEESGLELKQAA*
Ga0066709_10208217913300009137Grasslands SoilEFGALTVSVDKALANFATHPDTVLGLFGRYCEESGLELQQAA*
Ga0066709_10306923513300009137Grasslands SoilMISVDKALAHFASHSETVFGLFGRYCEESGLELNQAA*
Ga0066709_10347250413300009137Grasslands SoilFAVLTVSVDKALTYFATHVDTVLGLFGLYWEESGLALKHAA*
Ga0114129_1027221343300009147Populus RhizosphereALTVSVDKALASFATHPDTVLGLFGLYCEESGLVLKQAA*
Ga0114129_1049833433300009147Populus RhizosphereAAVVVSVDKALAYFAAHPEMVLDLFGLYCKESAFELKQAA*
Ga0114129_1058837033300009147Populus RhizosphereSVEKALAYFATHPDTVLGLFGRYCEESGLELKQAA*
Ga0114129_1296472813300009147Populus RhizosphereEFAALTVSVDNALAYIATHPEEVLGLFGRYCEESGLERKQAA*
Ga0111538_1029141913300009156Populus RhizosphereYFKEFALLTVSVEKALAYFAVHPEMVLGLFGRYCEDSGLELAQAA*
Ga0075423_1040928623300009162Populus RhizosphereVLTVSVDKALTYFATHPDTVLGLFGLYCEESGLELKQAA*
Ga0105242_1200032213300009176Miscanthus RhizosphereAALTVSVEKALAYFATHPDTVLGLFGRYCKESGLALQQAA*
Ga0105249_1213982213300009553Switchgrass RhizosphereFKEFAAVVVSVDKALAYFAAHPEMVLDLFGLYCKESAFELKQAA*
Ga0114944_112667023300009691Thermal SpringsLTVSVDKALAYFATHPEEVLGLFGRYCEESGLELRQAA*
Ga0114944_119231513300009691Thermal SpringsVLTVSVDKALAYFATHPEDVLGLFGRYCEESGLELKQAA*
Ga0126307_1159907113300009789Serpentine SoilVSVEKALAYFATHPDTVFGLFGRYCEESGLELQQAA*
Ga0105056_105714723300009801Groundwater SandKEFAALTVSVDKALAYFATHPETVSGLFGLYCQESGLELKQAA*
Ga0105062_100990823300009817Groundwater SandALTVSVDKALAYFATHPDTVLGLFGLYCEESGLELKQAA*
Ga0126309_1125129713300010039Serpentine SoilEHIDRKSQAFAALTVSVEKALAYFATHPEEIASLFGRYCEESGLELKQVA*
Ga0126384_1038284013300010046Tropical Forest SoilQYFEEFALLTVSVDKALAYFATHPDTVLGLFGLYCKESGLTLKQAA*
Ga0126382_1055312833300010047Tropical Forest SoilKYFKEFITLTVSVDKALAYFATHPDTVLGLFGRYCEESGLELKQAA*
Ga0126382_1219317613300010047Tropical Forest SoilALTASVDQALAYFATHPDTVCGLFGRYCEESGLELKQAA*
Ga0126382_1230443813300010047Tropical Forest SoilEFEALTVSVDKALAYFAMHLEIALELFRLYYEESGLKLKQTV*
Ga0126382_1233601623300010047Tropical Forest SoilISVEKALAYFATHPEEVLGLFGRYCKESGLELKQAA*
Ga0126376_1183414313300010359Tropical Forest SoilYFKEFATLTVSVDKALAYFATHPDTMLGLFGLYCEESGLVLKQAA*
Ga0126377_1163177123300010362Tropical Forest SoilHNPYFKEFALLTVSVEKALAYFATHPDTVLGPCGFFCEESGLELEQGA*
Ga0126379_1009846913300010366Tropical Forest SoilTHNKYFKEFTELTVSVEKALAYFATHAETVAGLFGRYCEESGLELKQAA*
Ga0126379_1073377423300010366Tropical Forest SoilYFKEFAALTVSVEKALAYFATHPDTVLGLFGLYCEESGLTLKQAA*
Ga0126383_1208963813300010398Tropical Forest SoilYFKEFATLTVSVDKALAYFATHPDTMLGLFGLYCQESGLVVKQAA*
Ga0126383_1368810923300010398Tropical Forest SoilMSVDKALAYFATHPDTVLGLFGLYCEESGLELKRAY
Ga0137389_1136626223300012096Vadose Zone SoilFKEFAAVVVSVDKALAYFAAHPEMVLDRFGRYWKESDLALKQAA*
Ga0137389_1178649213300012096Vadose Zone SoilVEKALAYFAMHPETVFGLFGRYCEESGLELKQAA*
Ga0137383_1067316523300012199Vadose Zone SoilALTVSVDKALAYFATHPDTVLGLCGLYCEESGLELKQAA*
Ga0137383_1075307923300012199Vadose Zone SoilSGDKALAYFATHAETVLCLWGLYCDESGLALKQAA*
Ga0137383_1076785723300012199Vadose Zone SoilEFAVLTASGDKALAYFATHAETVLCLWGLYCDESGLALKQAT*
Ga0137383_1087622023300012199Vadose Zone SoilVSVDKALASFATHPDMVLELFGLYCEDSGLELKQAA*
Ga0137363_1181329913300012202Vadose Zone SoilFAALTVSVDKALAYFATHPDTVLGLFGLYCEESGLELKQAA*
Ga0137362_1082276623300012205Vadose Zone SoilNQYFKEFAALTVSVDKALAYFATHPDMVLGLFGLYCEESGLELKQAA*
Ga0137380_1140915413300012206Vadose Zone SoilQYFKEFAALTVSVDKALASFATHPDMVLELFGLYCEDSGLELKQAA*
Ga0137380_1152643213300012206Vadose Zone SoilVDKALTYFAAHPETVLGLFGRYCEESGLELKQAA*
Ga0137381_1155643723300012207Vadose Zone SoilSVDKALAYFATHPEMVLGLFGLYCEESSLELKQAA*
Ga0137379_1020969713300012209Vadose Zone SoilASGDKALAYFATHAETVLCLWGLYCDESSLALKQAA*
Ga0137379_1030221923300012209Vadose Zone SoilSVDKALAYFATHPDTVLGLFGLYCEESDMELKQAA*
Ga0137387_1046713213300012349Vadose Zone SoilQYFKEFAALTVSVDKALAYFATHPDTVLGLFGLYCEESDMELKQAA*
Ga0137386_1040003623300012351Vadose Zone SoilMWFAALTISVEKALAYFATHPEEVLGLLGRYCEESGLELKQAA*
Ga0137386_1055806813300012351Vadose Zone SoilFVALTVSVDKALAYFATHAETVLGLFGRYCEESGLALQQAA*
Ga0137386_1098566623300012351Vadose Zone SoilLRIEFKEFVDLTMSVEKGLAYFATHPETVFGLFGRYCEESGLELKQAA*
Ga0137371_1122409213300012356Vadose Zone SoilKYFKEFAELTVSVEKALAYFATHPDTVLGLFGRYCEESGLELQQAA*
Ga0137385_1015292333300012359Vadose Zone SoilAELTVSVEKALAYFATHSETVLGLFGRYCEESGLELKQAA*
Ga0137360_1148764513300012361Vadose Zone SoilQYFKEFAALTVSVDKALAYCATPPAMVLGLFGLYCEESGLELKQAA*
Ga0137361_1045025633300012362Vadose Zone SoilFKEFAAVVVSVDKALTYFAAHPEMVLDLFGLYCKESDFALKQAA*
Ga0137390_1055981913300012363Vadose Zone SoilECAALTVSVEQALTYVAPHPDTVLGLFGRYGEESGLALQQAT*
Ga0134035_118037813300012391Grasslands SoilTGAVEKALAYFATHPETVLGLFGRYCEESGLELAQAA*
Ga0150984_11878409813300012469Avena Fatua RhizosphereFKEFATLTVSVDKALAYFATHPEEVLGLFGRYCEESGLELKQAA*
Ga0157336_102812713300012477Arabidopsis RhizosphereLTVSVDKALAFFATHADEVLGLFGRYCEESGLELKQAA*
Ga0137397_1032336723300012685Vadose Zone SoilQYFKGFAVLTASGDKALASFATHSETVLCLFGLYCEESGLALKQAA*
Ga0137359_1132164123300012923Vadose Zone SoilISVEQALAYCATPPEAVLGLFGCYCEESGLELQQAA*
Ga0137404_1006756523300012929Vadose Zone SoilMHTKYFKEFIALTVSVDKALAYFATHPDTVFGLFGRYCEESGLALKQAA*
Ga0137404_1169942423300012929Vadose Zone SoilTVSVDKALAYFATHPEEVLGLFGRYCEESGLELKQAA*
Ga0126369_1261489723300012971Tropical Forest SoilVSVEKALAYFATHPDTVLGLFGRYCEESGLALQQAA*
Ga0134110_1018484513300012975Grasslands SoilNKYFKEFAAVVVSVDKVLAYFAAHPEMVLDLFGLYCKESDFAFKQAA*
Ga0163162_1150758813300013306Switchgrass RhizosphereKEFAVLTVSVDKALTYFATHPDTVLGLFGLYCEESGLELQQAA*
Ga0134075_1005704123300014154Grasslands SoilLTMSVDKALAYFATHPEMVLGLFGLYCEESGFELKQAA*
Ga0182033_1164111613300016319SoilKEFAALTVSVDKALAYFATHPDTVLGLFGLYCAESDLELKQAA
Ga0182035_1020397013300016341SoilIELTVSVDKALAYFATHPETVLGLFRRYCEESGLELQQAA
Ga0182034_1117456923300016371SoilVSVDKALAYFATHPEEVFGLFGRYCEESGLELKQAT
Ga0182038_1096833123300016445SoilVSVDKALAYFATHPDTALGLFGLYCEESDLELKQAA
Ga0184634_1011048513300018031Groundwater SedimentATHNKYFKEFAALTISVEKALAYFATHPEEVLGLFGRYCEESGLELKQAA
Ga0184629_1002803813300018084Groundwater SedimentTVSGDKALAYFATHPDMVLGLFGRYREESGLALKQAA
Ga0126371_1324714813300021560Tropical Forest SoilKYFKEFTALTVSVDKALAYFAMHPDTVLGLFGRYCEESGLELKQAA
Ga0212128_1032349113300022563Thermal SpringsAVLTVSVDTALAYFATHPDMVLGLFGLYGEESGLALKQAA
Ga0209827_1021827423300025149Thermal SpringsLTVSVDKALAYFATHPEEVLGLFGRYCEESGLELRQAA
Ga0209827_1039410553300025149Thermal SpringsVTLTVSVDKALAYFATHPEEVLGLFGRYCEESGLELRQAA
Ga0209827_1146734613300025149Thermal SpringsVLTVSVDKALAYFATHPEDVLGLFGRYCEESGLELKQAA
Ga0207675_10026830733300026118Switchgrass RhizosphereFAVLTVSVDKALTYFATHPDTVLGLFGLYCEENGLELQQAA
Ga0207675_10057622113300026118Switchgrass RhizosphereFAVLTVSVDKALTYFATHPDTVLGLFGLYCEESGLELQQAA
Ga0209235_116083313300026296Grasslands SoilFQEFATLTVSVDKALAYFATHPEEVVGLFGRYCEESGLELKQAA
Ga0209874_104437013300027577Groundwater SandFAVLTASVDKALAYFATHSETVLCLFGLYCEESGLALKQAA
Ga0209180_1057735723300027846Vadose Zone SoilTHNKYFKEFIALTVSVDKALVYFATHPETVFGLFGRYCEESGLELQQAA
Ga0209814_1006601913300027873Populus RhizosphereFKEFAVLTASVDKALVYFATHSETVLCLFGLYCEESGLALKQAA
Ga0209814_1022636013300027873Populus RhizosphereVLTVSVAKALTYFATHPDTVLGLLGLYCEESGLELKQAA
Ga0209814_1023268213300027873Populus RhizosphereVISADKALVYFAAHPEMVLELLRLYGKESAFELKQVA
Ga0209590_1020683713300027882Vadose Zone SoilNKYFKEFAAMTVSVEKALAYFATHPDTVLGLFGSYCEESGLELTQAA
Ga0209488_1073700813300027903Vadose Zone SoilLTVSVEKALTYVAPHPDTVLGLFGRYGEESGLALQQAA
Ga0209889_103873213300027952Groundwater SandRECGKPDDKYFKKFAAWTVSGDKALAYFATHPETVLGLFGLYCEESGVEK
Ga0247828_1004361923300028587SoilEFTELTVSVEKALAYFAAHPDTVFGLFGRYCEESGLELQQAA
Ga0247820_1047459123300028597SoilVSVEKALAYGATHSETVLGLFGRYCEESGLELKQAA
Ga0307287_1036204023300028796SoilQYFKEFAALTVSVDKALAYFATHPETVLGLFGRYCEESGLELKQAA
Ga0307312_1089867613300028828SoilFKEFAALTVSVDKALAYFARHPETVLGLFGLYCEESGLELKQAA
Ga0299907_1059394013300030006SoilVELTVSVEKALAYFATHPDTVLGLFGRYCEENGFECKQAA
Ga0308205_100200533300030830SoilFAALTVSVDKALAYFATHPETVLGLFGRYCEESGLELKQAA
Ga0308202_112563423300030902SoilFKEFTALTVSVDKALAYFATHPDTVLGLFGRYCEESGLELKQAA
Ga0308196_105749923300030989SoilSVEKALAYFATHSEILLGLFGRYCEESGLELKQAA
Ga0308195_106396313300031123SoilKEFAALTVSVEKALAYFATHPDTVLGLFGCYREESGLELTQAA
Ga0318516_1039697413300031543SoilELTVSVDKALAYFATHPEMVLGLFGRYCEESGLPLKQAV
Ga0306918_1147002313300031744SoilTVSVDKALAYFATHPEEVLGLFGCYCEESGLECKQAA
Ga0318547_1040916023300031781SoilFTALMVSVEQALAYFAMHPDTVFSLFGRYCEESGLELTQAA
Ga0306923_1010715923300031910SoilLVNKYFKEFAELTVSVDKALAYFATHPEMVLGLFGRYCEESGLPLKQAV
Ga0310916_1142756123300031942SoilALTVSVDKALACFATHADEVLELCGRYCEESGLDLQQAA
Ga0306922_1025597613300032001SoilFAMLTASVDKALAYFAMHSETVLCLFGLYCEESGLALQQAA
Ga0306922_1054053013300032001SoilLVNKYFKEFAELTVSVDKALAYFATHPEMVLGLFGRYCEESGLPLKQAA
Ga0306922_1203838123300032001SoilRGAECASVDKALAYFAMHPDTVLGLFGRYCEESGLELKQAA
Ga0318553_1022051133300032068SoilVSVDKALAYCATHPEEVLGLFGCYCEESGLECKQAA
Ga0307470_1134765123300032174Hardwood Forest SoilVVVSVDKALAYFAAHPEMVLELLGLYCKESAFELKQVA
Ga0306920_10045172133300032261SoilFKELATLTVSVDKALAYCATHPEEVLGLLGCYCEESGLECKQAA
Ga0306920_10179348013300032261SoilVSVDKALAYFATHPDTVLGLFGRYCEESGLELPQAA
Ga0306920_10334942823300032261SoilLKQIPVSVEKALAYFATHPEAVLGLFGRYCEESGLELKQAA
Ga0370545_088593_338_4483300034643SoilVSGDKALAYFATHPDMVLGLFGRYREESGLELKQAA
Ga0314781_050508_3_1493300034660SoilHNKYFKEFATLPVSVDQALAYFATHSKEVLGLFGRYCEESGLELKQAA
Ga0314788_101705_528_6473300034666SoilALTVSVEKALAYFATHPEEIVSLFGRYCEESGLELKQVA
Ga0314794_007073_1346_14923300034669SoilHNKYFKEFATLTVSVDQALAYFATHSKEVLGLFGRYCEESGLELKQAA


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