NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047808

Metagenome / Metatranscriptome Family F047808

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047808
Family Type Metagenome / Metatranscriptome
Number of Sequences 149
Average Sequence Length 39 residues
Representative Sequence VFRFAVFVACAFDRAAMTAASALLSSAGLLALDGARR
Number of Associated Samples 115
Number of Associated Scaffolds 149

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 11.94 %
% of genes near scaffold ends (potentially truncated) 16.11 %
% of genes from short scaffolds (< 2000 bps) 73.15 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (67.785 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.503 % of family members)
Environment Ontology (ENVO) Unclassified
(29.530 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.362 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 53.85%    β-sheet: 0.00%    Coil/Unstructured: 46.15%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 149 Family Scaffolds
PF00009GTP_EFTU 39.60
PF03144GTP_EFTU_D2 10.07
PF07221GlcNAc_2-epim 2.68
PF13472Lipase_GDSL_2 2.68
PF01791DeoC 2.68
PF01502PRA-CH 2.01
PF00370FGGY_N 2.01
PF01850PIN 1.34
PF13191AAA_16 0.67
PF02627CMD 0.67
PF00196GerE 0.67
PF01037AsnC_trans_reg 0.67
PF13847Methyltransf_31 0.67
PF13635DUF4143 0.67
PF12802MarR_2 0.67
PF08494DEAD_assoc 0.67
PF04542Sigma70_r2 0.67
PF13476AAA_23 0.67
PF08837DUF1810 0.67
PF00561Abhydrolase_1 0.67
PF04191PEMT 0.67
PF01909NTP_transf_2 0.67
PF13377Peripla_BP_3 0.67
PF03235DUF262 0.67
PF13419HAD_2 0.67
PF00877NLPC_P60 0.67
PF06029AlkA_N 0.67
PF04266ASCH 0.67
PF00313CSD 0.67
PF00498FHA 0.67
PF01799Fer2_2 0.67
PF13424TPR_12 0.67
PF04239DUF421 0.67
PF12585DUF3759 0.67
PF08241Methyltransf_11 0.67
PF00202Aminotran_3 0.67
PF01411tRNA-synt_2c 0.67
PF13977TetR_C_6 0.67
PF04014MazE_antitoxin 0.67
PF03466LysR_substrate 0.67
PF10979DUF2786 0.67
PF03358FMN_red 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 149 Family Scaffolds
COG2942Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase familyCarbohydrate transport and metabolism [G] 2.68
COG0139Phosphoribosyl-AMP cyclohydrolaseAmino acid transport and metabolism [E] 2.01
COG0013Alanyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.67
COG01223-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.67
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.67
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.67
COG0791Cell wall-associated hydrolase, NlpC_P60 familyCell wall/membrane/envelope biogenesis [M] 0.67
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.67
COG1201Lhr-like helicaseReplication, recombination and repair [L] 0.67
COG1479DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domainsDefense mechanisms [V] 0.67
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.67
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.67
COG2323Uncharacterized membrane protein YcaP, DUF421 familyFunction unknown [S] 0.67
COG2411Predicted RNA-binding protein, contains PUA-like ASCH domainGeneral function prediction only [R] 0.67
COG3097Uncharacterized conserved protein YqfB, UPF0267 familyFunction unknown [S] 0.67
COG4405Predicted RNA-binding protein YhfF, contains PUA-like ASCH domainGeneral function prediction only [R] 0.67
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.67
COG5579Uncharacterized conserved protein, DUF1810 familyFunction unknown [S] 0.67


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.46 %
UnclassifiedrootN/A31.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10004937All Organisms → cellular organisms → Bacteria11996Open in IMG/M
3300005537|Ga0070730_10085352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2205Open in IMG/M
3300005537|Ga0070730_10111916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1880Open in IMG/M
3300005538|Ga0070731_10020064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae4642Open in IMG/M
3300005538|Ga0070731_10677127Not Available686Open in IMG/M
3300005542|Ga0070732_10610490All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300005591|Ga0070761_10132643All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1452Open in IMG/M
3300005602|Ga0070762_10123322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1525Open in IMG/M
3300005764|Ga0066903_103684786All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia824Open in IMG/M
3300005921|Ga0070766_10849416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales624Open in IMG/M
3300005921|Ga0070766_10935081Not Available594Open in IMG/M
3300006028|Ga0070717_10039506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3840Open in IMG/M
3300006175|Ga0070712_101311765Not Available631Open in IMG/M
3300006176|Ga0070765_100044791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3568Open in IMG/M
3300006176|Ga0070765_100218793All Organisms → cellular organisms → Bacteria1735Open in IMG/M
3300006176|Ga0070765_100331245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae1412Open in IMG/M
3300006176|Ga0070765_100727280All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales938Open in IMG/M
3300006176|Ga0070765_102072913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces531Open in IMG/M
3300006755|Ga0079222_12426201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces526Open in IMG/M
3300006893|Ga0073928_10085375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2691Open in IMG/M
3300009522|Ga0116218_1294517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces727Open in IMG/M
3300009523|Ga0116221_1305418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium689Open in IMG/M
3300010048|Ga0126373_11957111All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria649Open in IMG/M
3300010343|Ga0074044_10637530Not Available695Open in IMG/M
3300010360|Ga0126372_10435613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1209Open in IMG/M
3300010366|Ga0126379_10432474All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales1373Open in IMG/M
3300010379|Ga0136449_100363942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2589Open in IMG/M
3300010386|Ga0136806_1413016All Organisms → cellular organisms → Bacteria → Proteobacteria2584Open in IMG/M
3300010866|Ga0126344_1012817All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1863Open in IMG/M
3300010876|Ga0126361_10103253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1822Open in IMG/M
3300012181|Ga0153922_1013514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1911Open in IMG/M
3300012189|Ga0137388_12018322Not Available505Open in IMG/M
3300012359|Ga0137385_11454117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia549Open in IMG/M
3300014169|Ga0181531_10964510Not Available535Open in IMG/M
3300016319|Ga0182033_10855255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia804Open in IMG/M
3300016319|Ga0182033_11823100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces552Open in IMG/M
3300017821|Ga0187812_1109865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria898Open in IMG/M
3300017822|Ga0187802_10375590Not Available560Open in IMG/M
3300017924|Ga0187820_1091013All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria868Open in IMG/M
3300017926|Ga0187807_1055172All Organisms → cellular organisms → Bacteria → Terrabacteria group1233Open in IMG/M
3300017926|Ga0187807_1105572Not Available887Open in IMG/M
3300017926|Ga0187807_1228196All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300017942|Ga0187808_10436964Not Available601Open in IMG/M
3300017943|Ga0187819_10632157All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria606Open in IMG/M
3300017961|Ga0187778_10393455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces908Open in IMG/M
3300017970|Ga0187783_10004072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia10821Open in IMG/M
3300017970|Ga0187783_10644477Not Available766Open in IMG/M
3300017995|Ga0187816_10373140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces632Open in IMG/M
3300018062|Ga0187784_10492970All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae988Open in IMG/M
3300019887|Ga0193729_1136198Not Available900Open in IMG/M
3300020140|Ga0179590_1135144All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica672Open in IMG/M
3300020579|Ga0210407_10242486All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1404Open in IMG/M
3300020582|Ga0210395_10005632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria9586Open in IMG/M
3300020582|Ga0210395_10006174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria9096Open in IMG/M
3300020582|Ga0210395_10011548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. URHB00446561Open in IMG/M
3300020582|Ga0210395_10053673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2953Open in IMG/M
3300020583|Ga0210401_10019723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6483Open in IMG/M
3300020610|Ga0154015_1072921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus albus1077Open in IMG/M
3300021171|Ga0210405_11108416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces591Open in IMG/M
3300021181|Ga0210388_11239296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia632Open in IMG/M
3300021181|Ga0210388_11718381Not Available519Open in IMG/M
3300021401|Ga0210393_10649649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria861Open in IMG/M
3300021402|Ga0210385_10095343Not Available2067Open in IMG/M
3300021407|Ga0210383_10385563Not Available1208Open in IMG/M
3300021407|Ga0210383_10439968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1126Open in IMG/M
3300021407|Ga0210383_10674189All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia889Open in IMG/M
3300021407|Ga0210383_11449635All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces569Open in IMG/M
3300021474|Ga0210390_10096921All Organisms → cellular organisms → Bacteria2459Open in IMG/M
3300021474|Ga0210390_10385828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1184Open in IMG/M
3300021475|Ga0210392_10176491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1478Open in IMG/M
3300021476|Ga0187846_10070738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1522Open in IMG/M
3300021477|Ga0210398_10168210All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1785Open in IMG/M
3300021479|Ga0210410_11148599Not Available667Open in IMG/M
3300021560|Ga0126371_10127659All Organisms → cellular organisms → Bacteria2577Open in IMG/M
3300021560|Ga0126371_10458879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1421Open in IMG/M
3300025634|Ga0208589_1115653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae625Open in IMG/M
3300025939|Ga0207665_11126809All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces626Open in IMG/M
3300026356|Ga0257150_1046648All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces638Open in IMG/M
3300027171|Ga0207947_1004640Not Available877Open in IMG/M
3300027297|Ga0208241_1039243Not Available740Open in IMG/M
3300027619|Ga0209330_1007667All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2413Open in IMG/M
3300027729|Ga0209248_10029992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1695Open in IMG/M
3300027812|Ga0209656_10032228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3096Open in IMG/M
3300027853|Ga0209274_10026167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2681Open in IMG/M
3300027855|Ga0209693_10326245Not Available746Open in IMG/M
3300027857|Ga0209166_10091038Not Available1712Open in IMG/M
3300027867|Ga0209167_10063508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1834Open in IMG/M
3300027869|Ga0209579_10078271All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1749Open in IMG/M
3300027889|Ga0209380_10037969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2726Open in IMG/M
3300027895|Ga0209624_10241053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1202Open in IMG/M
3300027905|Ga0209415_10402767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1104Open in IMG/M
3300027908|Ga0209006_10014068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7248Open in IMG/M
3300029951|Ga0311371_10607273Not Available1404Open in IMG/M
3300029951|Ga0311371_11871973All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → unclassified Zavarzinella → Zavarzinella sp.644Open in IMG/M
3300030520|Ga0311372_12739493Not Available544Open in IMG/M
3300031057|Ga0170834_107889006Not Available553Open in IMG/M
3300031236|Ga0302324_100508698All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1756Open in IMG/M
3300031544|Ga0318534_10122010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1498Open in IMG/M
3300031545|Ga0318541_10688461Not Available571Open in IMG/M
3300031545|Ga0318541_10800622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces526Open in IMG/M
3300031680|Ga0318574_10235689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1057Open in IMG/M
3300031708|Ga0310686_101579732All Organisms → cellular organisms → Bacteria1648Open in IMG/M
3300031708|Ga0310686_102127406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1277Open in IMG/M
3300031708|Ga0310686_105042689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1178Open in IMG/M
3300031708|Ga0310686_112109847Not Available551Open in IMG/M
3300031708|Ga0310686_113197009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii824Open in IMG/M
3300031713|Ga0318496_10041084All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2372Open in IMG/M
3300031719|Ga0306917_11237938All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces579Open in IMG/M
3300031744|Ga0306918_10532738Not Available920Open in IMG/M
3300031754|Ga0307475_10958949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces674Open in IMG/M
3300031764|Ga0318535_10068044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1519Open in IMG/M
3300031765|Ga0318554_10212828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1100Open in IMG/M
3300031768|Ga0318509_10223112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1050Open in IMG/M
3300031792|Ga0318529_10488439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales573Open in IMG/M
3300031823|Ga0307478_10293279Not Available1330Open in IMG/M
3300031823|Ga0307478_10359818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1200Open in IMG/M
3300031823|Ga0307478_10805509All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia786Open in IMG/M
3300031831|Ga0318564_10442549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales567Open in IMG/M
3300031846|Ga0318512_10328332Not Available763Open in IMG/M
3300031859|Ga0318527_10165936All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria930Open in IMG/M
3300031910|Ga0306923_11598627Not Available678Open in IMG/M
3300031945|Ga0310913_10529995Not Available836Open in IMG/M
3300032009|Ga0318563_10271677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia916Open in IMG/M
3300032052|Ga0318506_10140871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1052Open in IMG/M
3300032052|Ga0318506_10568776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces502Open in IMG/M
3300032065|Ga0318513_10418774Not Available654Open in IMG/M
3300032515|Ga0348332_11132803All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces605Open in IMG/M
3300032770|Ga0335085_10643309All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1187Open in IMG/M
3300032895|Ga0335074_10876546Not Available819Open in IMG/M
3300032896|Ga0335075_10017369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia10698Open in IMG/M
3300032896|Ga0335075_10073447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4619Open in IMG/M
3300032896|Ga0335075_10587663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1106Open in IMG/M
3300033545|Ga0316214_1021804Not Available898Open in IMG/M
3300033547|Ga0316212_1004933All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1938Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.50%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil8.05%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment6.04%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil5.37%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.03%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut4.03%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.36%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.36%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.36%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.36%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.68%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.68%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.01%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.01%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.01%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.34%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.34%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.34%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.34%
RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Roots1.34%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.34%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.67%
SedimentEnvironmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment0.67%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.67%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.67%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.67%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.67%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.67%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.67%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.67%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.67%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009826Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010049Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3Host-AssociatedOpen in IMG/M
3300010162Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)Host-AssociatedOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010369Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)Host-AssociatedOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010386Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010866Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012181Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaGHost-AssociatedOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300020610Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025634Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300027171Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)EnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027619Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300033545Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4Host-AssociatedOpen in IMG/M
3300033547Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_10004937123300001356Peatlands SoilVFRFAVFVTCALDRAGMTAASALLSPAALLALGGARR*
Ga0070682_10087250223300005337Corn RhizosphereVFRFSVFADRVLDRAAMTAASALPSAGLSSALLSSAGLSAPDGARR*
Ga0070714_10009492413300005435Agricultural SoilRFSVFADRVLDRAAMTAASALLSSALLSSAGLSAPDGARR*
Ga0070714_10012446553300005435Agricultural SoilVFRFSVFADRVLDRAAMTAASALLSSALLSSALLSSAGLSAPDGARR*
Ga0070681_1176424313300005458Corn RhizosphereFSVFADRVLDRAAMTAASALPSAGLSSALLSSAGLSAPDGARR*
Ga0070679_10031775523300005530Corn RhizosphereVFRFSVFADRVCDRAAMTAASALLSSALLSSAGLSARDGARR*
Ga0070730_1008535213300005537Surface SoilVFRFAVLAACALDRAAMTAACAPLSSAGLLALRDARR*
Ga0070730_1011191623300005537Surface SoilVFRFAVITARALDRAAMTAAPAPLSPAGLPASRGARR*
Ga0070731_1002006473300005538Surface SoilVFRFAVFVARALDRAAMTAASVLLSSAGLLAVGGARG*
Ga0070731_1067712723300005538Surface SoilVFRFAVFVAYACDRAAMTAASAPLSSAGPLALDGARR
Ga0070732_1061049023300005542Surface SoilVFRFAVFVACARGRAAMTAALALLSPAGLLALGGARR*
Ga0068857_10194300123300005577Corn RhizosphereCRTLTGVFRFSVFADRVCDRAAMTAASALLSSALLSSVGLSARDGARR*
Ga0070761_1013264323300005591SoilVFRFAVFVACAFDRAAMTAASALLSSAGLLALDGARR*
Ga0070762_1012332223300005602SoilMPHACCVFRLAVFVARACDRAAMTAASPLLSSAGPLALGGARR*
Ga0066903_10368478623300005764Tropical Forest SoilVFRFAVFVGCALDRAAVTAASALLSPAGLLALGGARR*
Ga0070766_1084941623300005921SoilVFRFAVFVACARGRAAMTAALALLSPAGLLAFGGARR*
Ga0070766_1093508113300005921SoilVFRFAVFVACAFDHAAMTAASALLSSAGLVALDGARR*
Ga0070717_1003950623300006028Corn, Switchgrass And Miscanthus RhizosphereVFRFVVLVARALGRAAMTAASALLSSAGLLALGGARR*
Ga0070712_10131176513300006175Corn, Switchgrass And Miscanthus RhizosphereVFRFAVLVAYAFDRAAMTAASALASSAGLLALVGARR*
Ga0070765_10004479113300006176SoilFAVFVACARGRAAMTAALALLSPAGLLAFGGARR*
Ga0070765_10021879313300006176SoilVFRFAVFVAYACDRAAMTAASALLSSAGPLALDGTRR*
Ga0070765_10033124513300006176SoilVFRFAVFVACAFDRAAMTAASALLPSTLLALDGARR*
Ga0070765_10072728023300006176SoilVFRFAVITARALDRAAMTAAPAPLSPAARPARGARR*
Ga0070765_10207291323300006176SoilVIRFAVFVVHASDRAAMTAACALLSSAGLLALDGARR*
Ga0079222_1242620123300006755Agricultural SoilVFRFAVFVASALGRAALTAASALLSPAGLLALDGVRR*
Ga0073928_1008537513300006893Iron-Sulfur Acid SpringVFRFAVFVACARDRAAMTAASALLSPAGLLARDGARG*
Ga0116218_129451723300009522Peatlands SoilVFRFVVFVTCALDRAGMTAASALLSPAALLALGGARR*
Ga0116221_130541823300009523Peatlands SoilVFRFAVFVTCALDRAGMTAASALLSPAALLALGGAR
Ga0123355_1016326323300009826Termite GutVFRFSVFADRVLDRAAMTAASALLSSALLSSALLSARDGARR*
Ga0123355_1123158323300009826Termite GutFADRVVVRAAMTAASALLNSASLSSASLSAADGARR*
Ga0123355_1191218823300009826Termite GutLWYCTLGGVFRFTVFADRVVVRAAMTAASALLNSALLSSAALNGARR*
Ga0126373_1195711133300010048Tropical Forest SoilVFRFAVFVACALARAVMTAASALLPPAGLPAFGGARR*
Ga0123356_1044060823300010049Termite GutLWCCTLGGVFRFSVFADRVVVRAAMTAASALLNSAPLSSAALNGARR*
Ga0131853_1130886323300010162Termite GutVFRFSVFADRAVVRAAMTAASALLNSALLSSASLLAADGTRR*
Ga0074044_1063753023300010343Bog Forest SoilGVFRFAVLAACALDRAAMTAASALLPTGLLALDGARR*
Ga0126372_1043561323300010360Tropical Forest SoilVFRFTVFAGRAGDRAAMTAASALLSPAGLLALGGARR*
Ga0126379_1043247423300010366Tropical Forest SoilVFRFAVFVASALDRAAMTAASAPLSSAGLLALDGARR*
Ga0136643_1088445113300010369Termite GutVFRFSVFADRVVVRAAMTAASALLNSALLSALLSSAALNGARR*
Ga0134128_1031166413300010373Terrestrial SoilVFRFSVFADRVLDRAAMTAASALLSSALLSSAGLSAPDGARR*
Ga0136449_10036394223300010379Peatlands SoilVFRFAVFTACALDRAAVTAASALLSPAGLLALGGARR*
Ga0136806_141301623300010386SedimentMFRFAVFVARALGRAAVTAASALLSPAGVPAIGGARR*
Ga0134126_1001011883300010396Terrestrial SoilVFRFSVFADRVLDRAAMTAAPALVSSALLSSALLSSAGLSAPDGARR*
Ga0126344_101281723300010866Boreal Forest SoilVFRFAVFVAYACDRAAMTAASELLSSAGPLALDGTRR*
Ga0126361_1010325323300010876Boreal Forest SoilVFRFAVFVARALDRAAMTAASALLSSVGLLALDGARR*
Ga0153922_101351463300012181Attine Ant Fungus GardensVFRFADFVACALDRAAMTAAPALLSSAALLALDGARR*
Ga0137388_1201832223300012189Vadose Zone SoilVFRFAVLVACACGRAAMTAASALLSSVGLLALDGA
Ga0137385_1145411713300012359Vadose Zone SoilVFRFAVFVARALDRALDRAAMTAASALLSSALLSSAGLLALDGVRR*
Ga0181531_1096451013300014169BogVGVFRFGVFVARALGRAAMTAASVLLSSALSSAGLLALDGVRR*
Ga0182033_1085525513300016319SoilVFRFAAFVDCALLRAAMTAASALLSPTGLLALDGARR
Ga0182033_1182310023300016319SoilCRTLAGVFRFAVFVACALARAAMTAASALLSPAGLPAFGGARR
Ga0187812_110986523300017821Freshwater SedimentVFRFAVFMTCALGRAAMTAASALLSPAGLLARGGARG
Ga0187802_1037559023300017822Freshwater SedimentVFRFAVLDARALDRAAMTAAPAPLSAGLTAFDGARR
Ga0187820_109101323300017924Freshwater SedimentVFRFAVFVTRALGRAVLTAASALRPLSGLRALGGARG
Ga0187807_105517213300017926Freshwater SedimentVFRFAVLAACAVDRAAMTAASALLSPALVWPTLVSPTLVS
Ga0187807_110557213300017926Freshwater SedimentVFRFAVFVASALARAAMTAASAPLSPAPLSPAPLS
Ga0187807_122819623300017926Freshwater SedimentVFRFAVLDARALDRAAMTAAPALLSAGLTAFDGARR
Ga0187808_1043696423300017942Freshwater SedimentMFRFAVVAARALDRAGMTAASALLSSAGLLAPGGARG
Ga0187819_1063215723300017943Freshwater SedimentVFRFAVFVACAFDRAAMTAASALLSPAGVAARGGARR
Ga0187778_1039345523300017961Tropical PeatlandVFRFAVLVARAFGRAAMTAASALLSPAGLPARGGARR
Ga0187783_1000407223300017970Tropical PeatlandVFRFAVLVDRALDRAAMTAALALLSPAGLLALGGARR
Ga0187783_1064447713300017970Tropical PeatlandVFRFAVFVTCARDRAAMTAASALLSPAGLLARGGARG
Ga0187816_1037314013300017995Freshwater SedimentMFRFAVVAACALDRAGMTAASALLSSAGLLAPGGARG
Ga0187784_1049297023300018062Tropical PeatlandVFRFAVLVARAIDRAAMTAASALRSPAGLLALGGARR
Ga0193729_113619813300019887SoilVFRFAVFVARALDRAAMTAASALLSSAPLSSAGLLALDGTRL
Ga0179590_113514413300020140Vadose Zone SoilLVSVFRFAVFVARALDRAAMTAASALLSSAPLSSAGLLALDGTRR
Ga0210407_1024248623300020579SoilVFRFAVFVACAFDRAAMTAASALLSSAGLLALDGARR
Ga0210395_1000563213300020582SoilVFRFAVLDARALDRAAMTAASALLSAGLTAFDGARR
Ga0210395_1000617443300020582SoilVFRFAVFPACALDRAAMTAASALLSPAGLLARDGARG
Ga0210395_1001154833300020582SoilVFRFAVFVACAFDRAAMTAASALLSSAARPALDGARR
Ga0210395_1005367333300020582SoilVFRFAVFAAHAFDRAAMTAACALLSSAGLLALDGARR
Ga0210401_1001972353300020583SoilVFRFAVFVACAFDRAAMAAASALLSSAGLLALDGARR
Ga0154015_107292113300020610Corn, Switchgrass And Miscanthus RhizosphereVFRFSVFADRVLDRAAMTAASALLSSALLSPAGLSS
Ga0210405_1110841623300021171SoilVFRFAVFVTCALDRAAMTAASALLSPAALLALGGARR
Ga0210388_1123929613300021181SoilMPHAFGVFRFAVFALALGRAAMTAASALLSSALLALDGVRR
Ga0210388_1171838113300021181SoilVFRFGVFVARALGRAAMTAASVLLSSALSSSTGLLALDGARR
Ga0210393_1064964923300021401SoilMPHAFGMFRFAVFALALGRAAMTAASALLSSALPSSAGLLVLDGVRR
Ga0210385_1009534323300021402SoilVFRFAVLVARAFDRAAMTAASAPLSSAGLPTFDGARA
Ga0210383_1038556313300021407SoilVFRFAVFVACAFDHAAMTAASALLSSAGLVALDGARR
Ga0210383_1043996813300021407SoilMPHAFGVFRFAVFALALGRASMTAASALLSSALLSSALLSSVGLLALDGVRR
Ga0210383_1067418913300021407SoilVFRFAVFVACAFDRAAMAAASALLSSTGLLALDGARR
Ga0210383_1144963523300021407SoilCCVFRLAVFVARACDRAAMTAASPLLSSAGPLALGGARR
Ga0210390_1009692133300021474SoilVFRFAVFAAHAFDRAVMTAACALLSSAGLLALDGARR
Ga0210390_1038582823300021474SoilMPHACCVFRLAVFVARACDRAAMTAASPLLSSAGPLALGGARR
Ga0210392_1017649123300021475SoilVFRFAVLVARALGRAAMTAASALLSSALLSSAGLLALDGARR
Ga0187846_1007073823300021476BiofilmVFRFGVFNARALDRAAMTAASAPLSSSAGLLALDGARR
Ga0210398_1016821023300021477SoilVFRFAVFVACAFDHAAMTAASALLSSAGLLALDGARR
Ga0210410_1114859913300021479SoilMPHACCVFRLAVFVARACDRAAMTAASAPLSSGLPALDGARR
Ga0126371_1012765923300021560Tropical Forest SoilVFRFAVFAACAFDRAAMTAASALLPSAGLLAFGGARR
Ga0126371_1045887933300021560Tropical Forest SoilVFRFAVFVACALARAVMTAASALLPPAGLPAFGGARR
Ga0224712_1014783113300022467Corn, Switchgrass And Miscanthus RhizosphereDRAAMTAASALLSSALLSSALLSSAGLSARDGARR
Ga0208589_111565323300025634Arctic Peat SoilMFRFAFFVACALGRAAMTAVSALLSSAALLALDGARR
Ga0207665_1112680923300025939Corn, Switchgrass And Miscanthus RhizosphereVFRFSVFADRVLDRAAMTAASALLSSALLSSAGLLALDGVRL
Ga0257150_104664823300026356SoilVFRFAVFVASAFDRAAMTAASALLSSAALLALDGARR
Ga0207947_100464033300027171Forest SoilVFRFGVFVARALGRAAMTAASVLLSSALSSPAGLLAL
Ga0208241_103924313300027297Forest SoilMPHAFGVFRFAVFVALALGRAAMTAASALLSSALLSSSALLADDGARR
Ga0209330_100766743300027619Forest SoilMPHAFGVFRFAVFALALGRAAMTAASALLSSALLSSVGQLALDGVRR
Ga0209248_1002999223300027729Bog Forest SoilVFRFAVFVACAFDRTAMAAASALLSSAGLLALDGARR
Ga0209656_1003222823300027812Bog Forest SoilVFRFAVFVACALTRAAVTAASVLLSPAGLLALAGARG
Ga0209274_1002616743300027853SoilVFRFAVLAACALDRAAMTVASALLPAGLLALDGARR
Ga0209693_1032624523300027855SoilTLVDVFRFGVFVARALGRAAMAAASVLLSSALSSSTGLLALDGARR
Ga0209166_1009103823300027857Surface SoilVFRFAVITARALDRAAMTAAPAPLSPAGLPASRGARR
Ga0209167_1006350833300027867Surface SoilVFRFAVFVARALDRAAMTAASVLLSSAGLLAVGGARG
Ga0209579_1007827113300027869Surface SoilVFRFAVFVARALDRAAMTAASVLLSSAGLLAVGGAR
Ga0209380_1003796943300027889SoilVFRFAVFVACARGRAAMTAALALLSPAGLLAFGGARR
Ga0209624_1024105313300027895Forest SoilVFRFAVFVAYACDRAAMTAASALLSSAGPLALDGTRR
Ga0209415_1040276713300027905Peatlands SoilVFRFAVFVTCALDRAGMTAASALLSPAALLALGGARR
Ga0209006_1001406823300027908Forest SoilVFRFAVFVAYACDRAAMTAASALLSSAGPLALDGARR
Ga0311371_1060727313300029951PalsaVFRFAVFVARALDRAAMTAASVLLSSALLSSAGLLALDGV
Ga0311371_1187197313300029951PalsaMPHAFSVFRFAVFVARALDRAAMTAASALLSSALLSSMGLLALDGVRR
Ga0311372_1273949323300030520PalsaVFRFAVFVARALDRAAMTAASALLSSALLSSMGLLAL
Ga0170834_10788900623300031057Forest SoilVFRFAVFVARVLDRAAMTAAYALLSSAGLLALDGVRR
Ga0302324_10050869823300031236PalsaVFRFAVFVARALDRAAMTAASALLSSALLSSMGLLALDGVRR
Ga0318534_1012201033300031544SoilVFRFAVFICCALARAVMRAASALLSPTGLLALDGARR
Ga0318541_1068846123300031545SoilVFRFAVFVACALARAAMTAASALLSPAGLPAFGGARR
Ga0318541_1080062213300031545SoilVFRFAAFVDCALLRAAMTAASALLSPTDLPALDGARR
Ga0318574_1023568933300031680SoilVFRFAVFVDRAFPRAAMTAASALLSPTGLLALDGARR
Ga0310686_10157973243300031708SoilVFRFGFFIACALGRAAMTAASVLLSSALSSSAGLLALDGVRR
Ga0310686_10212740633300031708SoilVFRFAVFVACALDRAAMTAASALLSSAGLPARDGARR
Ga0310686_10504268923300031708SoilVFRFAVFVVHAFDRAAMTAACALLSSAGRLALDGVRR
Ga0310686_11210984723300031708SoilVFRFAVLVARAFDRAVLTAASVLLSSAGVAARDGARR
Ga0310686_11319700923300031708SoilMFRFAVSLACALGRAALTAASAPLSPAGLPVLDGARR
Ga0318496_1004108443300031713SoilVFRFAVFVARASDRAVLTAASALLSSAGPLALGGSRR
Ga0306917_1123793823300031719SoilVFRFAVFVACALARAAMTAASALLSPAGLPARGGARR
Ga0306918_1053273823300031744SoilVFRFAVFVARASDRAVLTAASALLSSAGLLALGGSRR
Ga0307475_1095894913300031754Hardwood Forest SoilVFRFAVFVALALGRAAMTAASALLSSALLPSAGLLALDGVRR
Ga0318535_1006804423300031764SoilVFRFAVFVARALGRAAMAAASALPSPAGLLALDGARR
Ga0318554_1021282813300031765SoilTLAGVFRFAVFICCALARAVMRAASALLSPTGLLALDGARR
Ga0318509_1022311213300031768SoilGVFRFAVFVARASDRAALTAASALLSPAGPLALGGSRR
Ga0318529_1048843923300031792SoilVFRFAVFADRALPRAAMTAASALLSPMGLLALDGARR
Ga0307478_1029327913300031823Hardwood Forest SoilMPHACCVFRLAVFVARACDRAAMTAASALLSSAGPLALDGARR
Ga0307478_1035981833300031823Hardwood Forest SoilVFRFAVFAAHALSRAAMTVASDLPSSAGLLALDGVRR
Ga0307478_1080550923300031823Hardwood Forest SoilRLAVFIACACDRAAMTAASALLSSAGPLALDGARR
Ga0318564_1044254913300031831SoilVFRFAVFVDRALARAAMTAASALLSPTGLLALDGARR
Ga0318512_1032833213300031846SoilGGRCRTLAGVFRFAVFVARASDRAVLTAASALLSSAGPLALGGSRR
Ga0318527_1016593623300031859SoilVFRFAVFLARALDRAAMTAASALLSPAGLLAPGGARG
Ga0306923_1159862713300031910SoilVFRFAVFAGCALARAAMTAASALLSPAGLPAFGGARR
Ga0310913_1052999523300031945SoilVFRFAVFVACALGRAAMTAASALLSSAGLPALDGARR
Ga0318563_1027167713300032009SoilFRFAVFICCALARAVMRAASALLSPTGLLAPDGARR
Ga0318506_1014087113300032052SoilVFRFAVFVARASDRAALTAASALLSPAGPLALGGSRR
Ga0318506_1056877613300032052SoilLAGVFRFAVFAGCALSRAAMTAASALLSPTGLLALYGARR
Ga0318513_1041877423300032065SoilLAGVFRFAVFVDCALLRAAMTAASALLSPTGLLALDGARR
Ga0348332_1113280323300032515Plant LitterVFRFGVFVARALGRAAMTAASALLSSELLSSAGLLAPGGVRR
Ga0335085_1064330923300032770SoilVFRFAVLVARALDRAAMTAASVLLSSALLSPAALLALDGARR
Ga0335074_1087654623300032895SoilVFRFAVLDASALDRAAMTAASALLSAGLPTLGGARR
Ga0335075_10017369123300032896SoilVFRFAVLVACALVRAAMTAAFALLSSAGLLPVDGARG
Ga0335075_1007344733300032896SoilMLAGVFWFADFVAYALDRAAMTAASALLSPAALLALGGARR
Ga0335075_1058766323300032896SoilVFRFAVLVAYALERAAMTAASALLWSVGVAALDGARR
Ga0316214_102180413300033545RootsVFRFGVFVARALGRAAMTAASALLSSAGLLALDGARR
Ga0316212_100493323300033547RootsVFRFGVFVARALGRAAMTAASALLSSALSSSAGLLALDGARR


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