Metagenome / Metatranscriptome Family F048797

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048797
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	62 residues
Representative Sequence	METGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTEAENEFRRLVESDLACK
Number of Associated Samples	76
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.93 %
% of genes near scaffold ends (potentially truncated)	27.89 %
% of genes from short scaffolds (< 2000 bps)	73.47 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.463 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (70.068 % of family members)
Environment Ontology (ENVO)	Unclassified (57.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (75.510 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.33% β-sheet: 0.00% Coil/Unstructured: 46.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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SCOP family	SCOP domain	Representative PDB	TM-score
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain	d1sxje1	1sxj	0.73532
a.80.1.1: DNA polymerase III clamp loader subunits, C-terminal domain	d1iqpa1	1iqp	0.71413
a.172.1.1: Helical scaffold and wing domains of SecA	d1tf5a2	1tf5	0.6871
e.79.1.0: automated matches	d4w8ka_	4w8k	0.67578
e.79.1.1: CRISPR associated protein Cas1-like	d3goda_	3god	0.66919

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF00072	Response_reg	7.48
PF07238	PilZ	5.44
PF06803	DUF1232	4.76
PF13668	Ferritin_2	2.04
PF02954	HTH_8	1.36
PF06210	DUF1003	0.68
PF13561	adh_short_C2	0.68
PF13426	PAS_9	0.68
PF04055	Radical_SAM	0.68
PF14417	MEDS	0.68
PF13776	DUF4172	0.68
PF01522	Polysacc_deac_1	0.68
PF00118	Cpn60_TCP1	0.68
PF03544	TonB_C	0.68
PF00589	Phage_integrase	0.68
PF06781	CrgA	0.68
PF00313	CSD	0.68
PF01381	HTH_3	0.68
PF00374	NiFeSe_Hases	0.68
PF04679	DNA_ligase_A_C	0.68
PF12088	DUF3565	0.68
PF12704	MacB_PCD	0.68
PF02687	FtsX	0.68
PF10996	Beta-Casp	0.68
PF00881	Nitroreductase	0.68
PF07690	MFS_1	0.68
PF12844	HTH_19	0.68
PF13185	GAF_2	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	4.76
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.68
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.68
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.68
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.68
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.68
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.68
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
All Organisms	root	All Organisms	43.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
cellular organisms	root	All Organisms → cellular organisms	43.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.89 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.52 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.04 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.52 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.04 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.52 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.04 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10528205	Not Available	693	Open in IMG/M
3300001593\|JGI12635J15846_10566160	Not Available	664	Open in IMG/M
3300002245\|JGIcombinedJ26739_100033552	All Organisms → cellular organisms → Bacteria	4567	Open in IMG/M
3300002906\|JGI25614J43888_10000476	All Organisms → cellular organisms → Bacteria	11061	Open in IMG/M
3300002906\|JGI25614J43888_10227979	Not Available	504	Open in IMG/M
3300002907\|JGI25613J43889_10009046	All Organisms → cellular organisms → Bacteria → Acidobacteria	2745	Open in IMG/M
3300002907\|JGI25613J43889_10146652	Not Available	610	Open in IMG/M
3300005177\|Ga0066690_10933883	Not Available	551	Open in IMG/M
3300005445\|Ga0070708_100429615	Not Available	1246	Open in IMG/M
3300005445\|Ga0070708_101572752	Not Available	612	Open in IMG/M
3300005468\|Ga0070707_101502446	Not Available	640	Open in IMG/M
3300005518\|Ga0070699_102206858	Not Available	502	Open in IMG/M
3300005545\|Ga0070695_100067194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2338	Open in IMG/M
3300007255\|Ga0099791_10188671	Not Available	970	Open in IMG/M
3300007255\|Ga0099791_10486567	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300007258\|Ga0099793_10257052	Not Available	844	Open in IMG/M
3300007258\|Ga0099793_10272288	Not Available	820	Open in IMG/M
3300007258\|Ga0099793_10325323	Not Available	749	Open in IMG/M
3300007258\|Ga0099793_10593425	Not Available	555	Open in IMG/M
3300007265\|Ga0099794_10074543	Not Available	1667	Open in IMG/M
3300007265\|Ga0099794_10078974	Not Available	1621	Open in IMG/M
3300007265\|Ga0099794_10774373	Not Available	513	Open in IMG/M
3300007788\|Ga0099795_10031910	Not Available	1818	Open in IMG/M
3300007788\|Ga0099795_10060343	Not Available	1405	Open in IMG/M
3300007788\|Ga0099795_10347447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	663	Open in IMG/M
3300009143\|Ga0099792_10535078	Not Available	738	Open in IMG/M
3300009143\|Ga0099792_10653050	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300009143\|Ga0099792_10755818	Not Available	633	Open in IMG/M
3300009143\|Ga0099792_10939324	Not Available	574	Open in IMG/M
3300009143\|Ga0099792_11132218	Not Available	528	Open in IMG/M
3300009143\|Ga0099792_11201876	Not Available	514	Open in IMG/M
3300010159\|Ga0099796_10095601	Not Available	1110	Open in IMG/M
3300011120\|Ga0150983_11815469	Not Available	780	Open in IMG/M
3300011269\|Ga0137392_10309964	Not Available	1305	Open in IMG/M
3300011269\|Ga0137392_10369335	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300011269\|Ga0137392_10514484	Not Available	994	Open in IMG/M
3300011271\|Ga0137393_10858671	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300012200\|Ga0137382_10103500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1882	Open in IMG/M
3300012202\|Ga0137363_10067289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2624	Open in IMG/M
3300012202\|Ga0137363_10217213	Not Available	1541	Open in IMG/M
3300012202\|Ga0137363_10805348	Not Available	797	Open in IMG/M
3300012202\|Ga0137363_10898963	Not Available	752	Open in IMG/M
3300012202\|Ga0137363_11576160	Not Available	548	Open in IMG/M
3300012203\|Ga0137399_10015777	All Organisms → cellular organisms → Bacteria → Acidobacteria	4766	Open in IMG/M
3300012203\|Ga0137399_10029316	All Organisms → cellular organisms → Bacteria	3762	Open in IMG/M
3300012203\|Ga0137399_10101967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2222	Open in IMG/M
3300012203\|Ga0137399_10252513	Not Available	1446	Open in IMG/M
3300012203\|Ga0137399_10775121	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300012205\|Ga0137362_10127812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2160	Open in IMG/M
3300012205\|Ga0137362_10363727	Not Available	1253	Open in IMG/M
3300012205\|Ga0137362_10499670	Not Available	1052	Open in IMG/M
3300012205\|Ga0137362_10605548	All Organisms → cellular organisms → Bacteria → Acidobacteria	945	Open in IMG/M
3300012205\|Ga0137362_10743391	Not Available	842	Open in IMG/M
3300012211\|Ga0137377_11438564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300012361\|Ga0137360_10027261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3906	Open in IMG/M
3300012361\|Ga0137360_10100998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2206	Open in IMG/M
3300012361\|Ga0137360_11716866	Not Available	533	Open in IMG/M
3300012362\|Ga0137361_10419595	All Organisms → cellular organisms → Bacteria → Acidobacteria	1229	Open in IMG/M
3300012362\|Ga0137361_10770526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300012362\|Ga0137361_11725474	Not Available	545	Open in IMG/M
3300012582\|Ga0137358_10234763	Not Available	1249	Open in IMG/M
3300012683\|Ga0137398_10037715	All Organisms → cellular organisms → Bacteria → Acidobacteria	2789	Open in IMG/M
3300012683\|Ga0137398_10701446	Not Available	703	Open in IMG/M
3300012685\|Ga0137397_10087795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2267	Open in IMG/M
3300012685\|Ga0137397_10462321	Not Available	945	Open in IMG/M
3300012917\|Ga0137395_10015520	All Organisms → cellular organisms → Bacteria → Acidobacteria	4296	Open in IMG/M
3300012917\|Ga0137395_10041688	All Organisms → cellular organisms → Bacteria	2840	Open in IMG/M
3300012917\|Ga0137395_10099206	All Organisms → cellular organisms → Bacteria → Acidobacteria	1932	Open in IMG/M
3300012917\|Ga0137395_11140797	Not Available	550	Open in IMG/M
3300012918\|Ga0137396_10337797	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300012918\|Ga0137396_10812719	Not Available	687	Open in IMG/M
3300012922\|Ga0137394_10563428	Not Available	965	Open in IMG/M
3300012923\|Ga0137359_10017632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6032	Open in IMG/M
3300012923\|Ga0137359_10622424	Not Available	945	Open in IMG/M
3300012923\|Ga0137359_11575004	Not Available	545	Open in IMG/M
3300012924\|Ga0137413_10310476	Not Available	1105	Open in IMG/M
3300012925\|Ga0137419_10021018	Not Available	3811	Open in IMG/M
3300012925\|Ga0137419_10112867	All Organisms → cellular organisms → Bacteria → Acidobacteria	1904	Open in IMG/M
3300012925\|Ga0137419_10945547	Not Available	712	Open in IMG/M
3300012925\|Ga0137419_11034614	Not Available	682	Open in IMG/M
3300012925\|Ga0137419_11117802	Not Available	657	Open in IMG/M
3300012927\|Ga0137416_10341366	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300012927\|Ga0137416_10629637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
3300012927\|Ga0137416_11253465	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300012927\|Ga0137416_12061535	Not Available	524	Open in IMG/M
3300012929\|Ga0137404_11945073	Not Available	548	Open in IMG/M
3300012944\|Ga0137410_10205978	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300015054\|Ga0137420_1472375	Not Available	4853	Open in IMG/M
3300015241\|Ga0137418_10507962	Not Available	962	Open in IMG/M
3300015242\|Ga0137412_10358453	Not Available	1135	Open in IMG/M
3300015245\|Ga0137409_10400688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300015264\|Ga0137403_10289202	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300020170\|Ga0179594_10213026	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300020199\|Ga0179592_10006566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4974	Open in IMG/M
3300020199\|Ga0179592_10285066	Not Available	736	Open in IMG/M
3300020199\|Ga0179592_10508938	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300020580\|Ga0210403_10411773	Not Available	1103	Open in IMG/M
3300020581\|Ga0210399_11539428	Not Available	515	Open in IMG/M
3300020583\|Ga0210401_10011281	All Organisms → cellular organisms → Bacteria → Acidobacteria	8729	Open in IMG/M
3300021088\|Ga0210404_10000309	All Organisms → cellular organisms → Bacteria	27977	Open in IMG/M
3300021088\|Ga0210404_10088931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1537	Open in IMG/M
3300021168\|Ga0210406_10007149	All Organisms → cellular organisms → Bacteria	11419	Open in IMG/M
3300021168\|Ga0210406_10035496	All Organisms → cellular organisms → Bacteria	4468	Open in IMG/M
3300021170\|Ga0210400_10582827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	922	Open in IMG/M
3300024182\|Ga0247669_1044701	Not Available	738	Open in IMG/M
3300024288\|Ga0179589_10155794	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300024323\|Ga0247666_1106926	Not Available	555	Open in IMG/M
3300025905\|Ga0207685_10363108	Not Available	733	Open in IMG/M
3300025910\|Ga0207684_11451984	Not Available	560	Open in IMG/M
3300025922\|Ga0207646_11233608	Not Available	655	Open in IMG/M
3300026304\|Ga0209240_1001828	All Organisms → cellular organisms → Bacteria	8186	Open in IMG/M
3300026304\|Ga0209240_1003689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5776	Open in IMG/M
3300026319\|Ga0209647_1030550	All Organisms → cellular organisms → Bacteria → Acidobacteria	3161	Open in IMG/M
3300026320\|Ga0209131_1005368	All Organisms → cellular organisms → Bacteria → Acidobacteria	8339	Open in IMG/M
3300026320\|Ga0209131_1007405	All Organisms → cellular organisms → Bacteria	6945	Open in IMG/M
3300026356\|Ga0257150_1058697	Not Available	575	Open in IMG/M
3300026359\|Ga0257163_1037012	Not Available	771	Open in IMG/M
3300026361\|Ga0257176_1040248	Not Available	722	Open in IMG/M
3300026555\|Ga0179593_1020422	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300026557\|Ga0179587_10337478	Not Available	976	Open in IMG/M
3300026557\|Ga0179587_10359012	Not Available	946	Open in IMG/M
3300026557\|Ga0179587_10808387	Not Available	618	Open in IMG/M
3300027512\|Ga0209179_1089385	Not Available	682	Open in IMG/M
3300027603\|Ga0209331_1011366	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300027660\|Ga0209736_1057633	Not Available	1094	Open in IMG/M
3300027671\|Ga0209588_1012888	All Organisms → cellular organisms → Bacteria → Acidobacteria	2543	Open in IMG/M
3300027671\|Ga0209588_1020948	All Organisms → cellular organisms → Bacteria → Acidobacteria	2049	Open in IMG/M
3300027671\|Ga0209588_1046399	Not Available	1405	Open in IMG/M
3300027671\|Ga0209588_1050009	Not Available	1353	Open in IMG/M
3300027671\|Ga0209588_1116794	Not Available	855	Open in IMG/M
3300027903\|Ga0209488_10029339	All Organisms → cellular organisms → Bacteria → Acidobacteria	4005	Open in IMG/M
3300027903\|Ga0209488_10382493	Not Available	1043	Open in IMG/M
3300027903\|Ga0209488_10678329	Not Available	740	Open in IMG/M
3300027903\|Ga0209488_10947889	Not Available	600	Open in IMG/M
3300028047\|Ga0209526_10071936	All Organisms → cellular organisms → Bacteria → Acidobacteria	2433	Open in IMG/M
3300028536\|Ga0137415_10008829	All Organisms → cellular organisms → Bacteria → Acidobacteria	9991	Open in IMG/M
3300028536\|Ga0137415_10105873	All Organisms → cellular organisms → Bacteria → Acidobacteria	2663	Open in IMG/M
3300028536\|Ga0137415_10187598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1891	Open in IMG/M
3300028536\|Ga0137415_10436121	Not Available	1115	Open in IMG/M
3300028536\|Ga0137415_11134853	Not Available	595	Open in IMG/M
3300028536\|Ga0137415_11191476	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300030991\|Ga0073994_12379523	Not Available	2319	Open in IMG/M
3300031715\|Ga0307476_10035513	All Organisms → cellular organisms → Bacteria	3340	Open in IMG/M
3300032174\|Ga0307470_11032245	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300032180\|Ga0307471_100139083	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300032180\|Ga0307471_101751146	Not Available	774	Open in IMG/M
3300032205\|Ga0307472_102622521	Not Available	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.80%
Loam	Environmental → Terrestrial → Soil → Loam	10.20%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	70.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	70.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_105282052	3300001593	Forest Soil	METGFLDRLANQLKANKSATCHRAIQRILVRIKEHCESGQYQSTTDAESEFRRLVESDLACK*
JGI12635J15846_105661602	3300001593	Forest Soil	METTFLDRLASQLRVNKSATCRRAIQRILVRIKEHCESGQYRSATDAENEFRRLVESDLACK*
JGIcombinedJ26739_1000335525	3300002245	Forest Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHRESGQYQSTTDAESEFRRLVESDLACK*
JGI25614J43888_100004767	3300002906	Grasslands Soil	METGFLDRLANQLKINKSATCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVESDLACK*
JGI25614J43888_102279791	3300002906	Grasslands Soil	METDFLDRLANQLKVNKGAACRRAIQRILVRIKEHYESGEYRSTIEAGSEFRRLVESDLACK*
JGI25613J43889_100090464	3300002907	Grasslands Soil	METAFLDRLANQLKANKTATCRRAIQRILVRIKEHCESGQYQSTTDAENEFRRLVESDLACK*
JGI25613J43889_101466522	3300002907	Grasslands Soil	METAFLDRLANQLKANKSATCRRAIQRILVRIKEHYESGQYRTPSDAETEFRRLVESDLACK*
Ga0066690_109338832	3300005177	Soil	VAYSQILMETDFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYRSTTEAENEFRRLVESDLAFK*
Ga0070708_1004296153	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	METGFLDRLANQLKANKTATCRRAIQRILVRIKEHYETGQYKNTTDAEIEFRRLVESDLACKQSV*
Ga0070708_1015727521	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	METSFLHRWANQLKANKSAICRRAIQRILVRMKQHCETGKYQSATDAENEF*
Ga0070707_1015024461	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDRLANQLKTNKSAVCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVNSDLACK*
Ga0070699_1022068581	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDRIATQLKTSKSGACRRAIPRILARMREHCESGQYSRVTEAENESKRD*
Ga0070695_1000671943	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDRLATQLKTNKTAACRRAIQRILVRVKQHCESGQYTSTTDAENEFRRLVDSDLACR*
Ga0099791_101886711	3300007255	Vadose Zone Soil	METMYYIGVETGFLVRLANQLKANKSASCRRAIQRILVRIKEHCESGQYNSTTAAENEFRRLVESHLACR*
Ga0099791_104865671	3300007255	Vadose Zone Soil	VETGFLDRLANQLKINKSATCRRAIQRILVRIKEHYESGQYKTTTDAENEFRRLVESDLA
Ga0099793_102570522	3300007258	Vadose Zone Soil	METDFLDRLANQLKVNKSVTCRRAIQRILVRIKEHCQSGQYRSTTEAENEFRRLVESDLACK*
Ga0099793_102722881	3300007258	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHCETGQYKSTTDAENEFRRLVESDLACK*
Ga0099793_103253231	3300007258	Vadose Zone Soil	METAFLDRLATQLKANKSAQCRRAIQRILVRMKEHCESGQYQSTTDAENEFRRLVESDLACK*
Ga0099793_105934251	3300007258	Vadose Zone Soil	RYNQEVSPMETMYYIGMETGFLVRLANQLKANKSASCRRAIQRILVRIKEHCESGQYNGTTDAENEFRRLVESDLACR*
Ga0099794_100745432	3300007265	Vadose Zone Soil	METSFLDRLANQLKANKSAICRRAIQRILVRMKQHCETGQYQSTTDAENEFRRLVESDLACK*
Ga0099794_100789741	3300007265	Vadose Zone Soil	MDTAFLDRLATQLKVGKSAACCRAIERILVRMKEHYESGQYHSTTEAENEFRRLVETDLACK*
Ga0099794_107743732	3300007265	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILNRMKEHCESGQYKSTTDAENEFRRLVDS
Ga0099795_100319101	3300007788	Vadose Zone Soil	METGFLDRFANQLKINKSATCRRVIQRILNRMKEHCERGQYKSTTDAENEFRRLVESDLACK*
Ga0099795_100603434	3300007788	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK*
Ga0099795_103474471	3300007788	Vadose Zone Soil	METGFLDRLANQLKVNKSAICRRAIQRILNRMKERYESGQYKSTTDAENEF
Ga0099792_105350782	3300009143	Vadose Zone Soil	MKTDFLDRLANQLKLNKSATCRRAIQRILVRIKEHCESGQYRSTTEAENEFRRLVESDLACK*
Ga0099792_106530501	3300009143	Vadose Zone Soil	MIQLFMETGFLDRLANQLKVNKSATCRRAIQRILVRVKEHSESGQYKSTTDAENEFRRLVDSDLACK*
Ga0099792_107558181	3300009143	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLV
Ga0099792_109393242	3300009143	Vadose Zone Soil	FLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYGSTTEAENEFRRLVESDLACK*
Ga0099792_111322181	3300009143	Vadose Zone Soil	METGFLDRLANQLKINKSAPCRRAIQRILVRIKEHCESGQYKSNTDAENEFRRLVESDLACK*
Ga0099792_112018762	3300009143	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILVRIKEHCESGEYQTASEAENEFRRLVESDLACK*
Ga0099796_100956011	3300010159	Vadose Zone Soil	METDFLDRLANQLKTNKTPTCRRAIQRILNRMKEHCERGQYQTTTEAENE
Ga0150983_118154691	3300011120	Forest Soil	METGFLDRLANQLKANKSASCRRAIERILVRIKEHCESGQYQSTTDAENEFRRLVESDLACR*
Ga0137392_103099642	3300011269	Vadose Zone Soil	MDTAFLDRLATQLKVGKSAACRRAIERILVRMKEHYESGQYHSTTEAENEFRRLVETDLACK*
Ga0137392_103693351	3300011269	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILNRMKERCEGGQYKSTTDAENEFRRLVESDLACK*
Ga0137392_105144842	3300011269	Vadose Zone Soil	METGFLDRLANQLEANKSATCRRAIQRILLRIKEHCESGQYKTTTDAENEFRRLVDSDLACK*
Ga0137393_108586713	3300011271	Vadose Zone Soil	METGFLDRLANQLKINKSATCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVESDL
Ga0137382_101035004	3300012200	Vadose Zone Soil	METGFLDRLANQLKINKSPTCRRAIQRILVRIKEHCESGQYKSTTEAENEFRRLVESDLACK*
Ga0137363_100672892	3300012202	Vadose Zone Soil	METGFLDRLANQLMANKTATCRRAIQRILVRMKEHCETGQYKSTTEAENEFRRLVESDLACK*
Ga0137363_102172134	3300012202	Vadose Zone Soil	MEMGFLDRLANQLKTNKGPACRRAIQRILVRMKEHCESGQYQSTTDAENEFRRLVESDLACK*
Ga0137363_108053482	3300012202	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACKQSPAAKMNPIRHTK*
Ga0137363_108989631	3300012202	Vadose Zone Soil	METAFLDRLANQLKANKSATCRRAIQRILVRIKEHCESGQHQRATDAENEFRRLVESDLSCK*
Ga0137363_115761601	3300012202	Vadose Zone Soil	METDFLDRLANQLKVNKSATCRRAIQRILVRIKEHCQSGQYKSTTEAENEFRRLV
Ga0137399_100157778	3300012203	Vadose Zone Soil	MSTQFLDRLSKQLRIGKSAACRRAIELILERVKKHNASGQYRSATEAENEFRRLVESDLACK*
Ga0137399_100293162	3300012203	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHCETGQYKSTTEAENEFRRLVESDLACK*
Ga0137399_101019671	3300012203	Vadose Zone Soil	HFMETGFLDRLANQLKINKSATCRRVIQRILNRMKEHCERGQYKSTTDAENEFRRLVESDLACK*
Ga0137399_102525133	3300012203	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTEAENEFRRLVESDLACK*
Ga0137399_107751211	3300012203	Vadose Zone Soil	TLMETGFLDRLANQLKANKTAICRRAIQRILVRIKEHCESGQYQNTTDAENEFRRLVESDLACK*
Ga0137362_101278122	3300012205	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHYETGQYKSTTDAENEFRRLVESDLACK*
Ga0137362_103637271	3300012205	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILHRMKEHCESGQYKSTTDAENEFRR
Ga0137362_104996702	3300012205	Vadose Zone Soil	METGFLDRLANQLNVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK*
Ga0137362_106055483	3300012205	Vadose Zone Soil	SDLSQTLMETGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTDAENEFRRLVDSDLACK*
Ga0137362_107433911	3300012205	Vadose Zone Soil	METDFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYGSTTEAENEFRRLVESDLACK*
Ga0137377_114385641	3300012211	Vadose Zone Soil	METGFLDRLANQLKANKAATCRRAIQRILNRMKEHCESGQYKSTTDAENEFRRLVESDLA
Ga0137360_100272619	3300012361	Vadose Zone Soil	METGFLDRLANQLGIDKSAACRRAIQRILVRMKEHCESGQYQSTTDAENEFRRLVETDLACK*
Ga0137360_101009981	3300012361	Vadose Zone Soil	METGFLDRLANQLMANKTATCRRAIQRILVRMKEHYETGQYKSTTDAENEFRRLVESD
Ga0137360_117168661	3300012361	Vadose Zone Soil	LFSCLMIQLFMETGFLDRLANQLKVNKSATCRRAIQRILVRVKEHSESGQYKSTTDAENEFRRLVDSDLACK*
Ga0137361_104195953	3300012362	Vadose Zone Soil	METGFLDRLANQLMANKTATCRRAIQRILVRMKEHYETGQYKSTTDAENEFRRLVESDLACK*
Ga0137361_107705261	3300012362	Vadose Zone Soil	MLCAILVFPTRTPLMDTAFLDRLATQLKVGKNAACRRAIERILVRIKAHCESGQYQTPTDAENEFRRLVETDLACK*
Ga0137361_117254742	3300012362	Vadose Zone Soil	LANQLGIDKSAACRRAIQRILVRMKEHCESGQYQSTTDAENEFRRLVETDLACK*
Ga0137358_102347631	3300012582	Vadose Zone Soil	GLLDRLANQLKINKSAPCRRAFQRILVRIKEHCESGQYKSNTDAENEFRRLVESDLACK*
Ga0137398_100377153	3300012683	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILHRMKEHCESGQYKSTTDAENEFRRLVDSDLACK*
Ga0137398_107014462	3300012683	Vadose Zone Soil	FLDRLANQLKVNKSATCSRAIQRILVRIKQHCESGQYQTAREAENEFRRLVESDLACK*
Ga0137397_100877952	3300012685	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRIKEHYESGQYKSATDAENEFRRLVESDLACK*
Ga0137397_104623211	3300012685	Vadose Zone Soil	MKTDFLDRLANQLKLNKSATCRRAIQRILIRIKEHCESGQYRSTTEAETEFRRLVESDLACK*
Ga0137395_100155208	3300012917	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILNRMKEHCESGQYKSTTDAENEFRRLVESDLACK*
Ga0137395_100416882	3300012917	Vadose Zone Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHYESGQYKSATDAENEFRRLVESDLACK*
Ga0137395_100992061	3300012917	Vadose Zone Soil	METMYYIGMETGFLVRLANQLKANKSASCRRAIQRILVRTKEHRESVQYKNTTDAENEFRRLVESDLACR*
Ga0137395_111407972	3300012917	Vadose Zone Soil	VQCYFFQRPLVKHFMETGFLDRFANQLKINKSATCRRVIQRILNRMKEHCERGQYKSTTDAENEFRRLVESDLACK*
Ga0137396_103377972	3300012918	Vadose Zone Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHCESGQYQSTTDAESEFRRLVESDLACK*
Ga0137396_108127191	3300012918	Vadose Zone Soil	METGFLDRLANQLKANKGAACRRAIQRILVRIKEHYESGQYQSIRDAENEFRRLVESDLACK*
Ga0137394_105634281	3300012922	Vadose Zone Soil	METSFLDRLANQLKANKSAICRRAIQRILVRMKQHCETGQYQSTTDAENE
Ga0137359_100176325	3300012923	Vadose Zone Soil	METGFHDRLANQLKVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK*
Ga0137359_106224242	3300012923	Vadose Zone Soil	METDFLDRLANQLKVNKGAACRRAIQRILVRIKEHYESGEYRSIIEAESGFRRLVESDLACK*
Ga0137359_115750041	3300012923	Vadose Zone Soil	METAFLDRLANQLKANKTATCRRAIQRILVRMQEHCETGQYQSTTDAENEFRRV
Ga0137413_103104761	3300012924	Vadose Zone Soil	METDFLDRLANQLKTNKTPTCSRAIQRILNRMTENCERGQYHTTTKAENEFP
Ga0137419_100210187	3300012925	Vadose Zone Soil	STQFLDRLSKQLRIGKSAACRRAIELILERVKKHNASGQYRSATEAENEFRRLVESDLACK*
Ga0137419_101128675	3300012925	Vadose Zone Soil	MYYIGMETGFLVRLANQLKANKSASCRRAIQRILVRIKEHCESGQYNSATDAENEFRRLVESDLACR*
Ga0137419_109455471	3300012925	Vadose Zone Soil	METDFLDRLANQLKVNKSVTCRRAIQRILVRIKEHCQSGQYRSTTEAENEFRRLVEGDLACK*
Ga0137419_110346141	3300012925	Vadose Zone Soil	METAFLDRLANQLKVNKSATCRRAIQRILVRIREHCESGQYKSTTEAENEFRRLVERDLACK*
Ga0137419_111178023	3300012925	Vadose Zone Soil	MKTDFLDRLASQLRVNKSATCRRAIQRILVRMKEHCESGQYQSTTDAENEFRRLVETDL
Ga0137416_103413662	3300012927	Vadose Zone Soil	METAFLDRLANQLKANKSATCRRAIQRILVRIKEHCESGQHQRATDAENEFRRLVESDLARK*
Ga0137416_106296371	3300012927	Vadose Zone Soil	METDFLDRLANQLKANKGAACRRAIQRILVRIKEHCESGQYQSTTDAESEFRRLVESDLACK*
Ga0137416_112534651	3300012927	Vadose Zone Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHCESGQYQSTTDAENEFRRLVETDLACK*
Ga0137416_120615352	3300012927	Vadose Zone Soil	MSTEFLDRLATELKIGKSAACCRAIQRILDRMKQHYESGQYHSAAEAEDEFRRLVETDLACK*
Ga0137404_119450732	3300012929	Vadose Zone Soil	METGFLDRLANQLKINKSATCRRAIQRILVRIKEHYESGQYKTTTDAENEFRRLVESDLACK*
Ga0137410_102059783	3300012944	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTDAENEFRRLVDSDL
Ga0137420_14723759	3300015054	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKKKKKKHCETGQYKSTTDAENEFRRLVESDLACK*
Ga0137418_105079622	3300015241	Vadose Zone Soil	LRLATPEGPATMSTQFLDRLSKQLRIGKSAACRRAIELILERVKKHNASGQYRSATEAENEFRRLVESDLACK*
Ga0137412_103584531	3300015242	Vadose Zone Soil	LDRLANQLKLNKSATCRRAIQRILVRIKEHCESGQYRSTTEAENEFRRLVESDLACK*
Ga0137409_104006882	3300015245	Vadose Zone Soil	LMETGFLDRLANQLKANKTATCRRAIQRILVRMKEHCETGQYKSTTEAENEFRRLVESDLACK*
Ga0137403_102892022	3300015264	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTDAENEFRRLVDSDLACK*
Ga0179594_102130262	3300020170	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHCETGQYKSTTDAENEFRRLVESDLACK
Ga0179592_100065668	3300020199	Vadose Zone Soil	METGFLDRFANQLKINKSATCRRVIQRILNRMKEHCERGQYKSTTDAENEFRRLVESDLACK
Ga0179592_102850662	3300020199	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK
Ga0179592_105089381	3300020199	Vadose Zone Soil	QLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTDAENEFRRLVDSDLACK
Ga0210403_104117731	3300020580	Soil	VRLTFPAARSQTLMETGFLDRLANQLKANKSASCRRAIERILVRIKEHCESGQYQSTTDAENEFRRLVESDLACK
Ga0210399_115394281	3300020581	Soil	METGFLDRLANQLKTNKTATCRRAIQRILVRIKEHCETGQYASTTDVENEFRRLVESDLA
Ga0210401_100112811	3300020583	Soil	METGFLDRLANQLKANKSATCRRAIQRILVRIKEHCETGQYQSTTDAENEFRRLVESDLACK
Ga0210404_1000030930	3300021088	Soil	MSTEFLDRLATQLKIGKSAACRRAIQRILVRIKEHCESGQYQSATDAEAEFRRLVGTDLACK
Ga0210404_100889312	3300021088	Soil	METGFLDRLANQLKANKSATCRRAIQRILVRIKEHCETGQYQSATDAESEFRRLVESDLACK
Ga0210406_100071499	3300021168	Soil	METGFLDRLANQLKTNKTATCRRAIQRILVRIKEHCETGQYASTTDVENEFRRLVESDLACK
Ga0210406_100354963	3300021168	Soil	METGFLDRLANQLKANKSASCRRAIERILVRIKEHCESGQYQSTTDAENEFRRLVESDLACK
Ga0210400_105828272	3300021170	Soil	METGFLDRLANQLKANKTAICRRAIQRILVRIKEHYESGQYQTTTDAENEFRRLVESDLACK
Ga0247669_10447012	3300024182	Soil	METAFLDHLANQLGINKSAACRRAIQRILVRMKQHCANGQYKSTTDAEAEFRRLVETDLACK
Ga0179589_101557942	3300024288	Vadose Zone Soil	VGAFPSRGTEPSILSSDLSQTLMETGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTDAENEFRRLVDSDLACK
Ga0247666_11069261	3300024323	Soil	METAFLDRLATQLKTNKTAACQRAIQRILVRVKQHCESGQYTSTTDAENEFRRLVDSDLACR
Ga0207685_103631082	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDRLANQLKINKSAACRRAIQRILVRMKEHCESGQYHSTTDAENEFRRLVESDLACK
Ga0207684_114519841	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDHLANQLGIDKSAACRRAIQRILVRLKEHCANGQYKSTTDAEAEFRRLVETDLACK
Ga0207646_112336082	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	METAFLDRLANQLKTNKSAVCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVNSDLACK
Ga0209240_100182811	3300026304	Grasslands Soil	METGFLDRLANQLKINKSATCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVESDLACK
Ga0209240_10036892	3300026304	Grasslands Soil	METDFLDRLANQLKVNKGAACRRAIQRILVRIKEHYESGEYRSTIEAGSEFRRLVESDPACK
Ga0209647_10305501	3300026319	Grasslands Soil	METDFLDRLANQLKVNKGAACRRAIQRILVRIKEHYESGEYRSTIEAGSEFRRLVESDLACK
Ga0209131_10053685	3300026320	Grasslands Soil	METAFLDRLANQLKANKTATCRRAIQRILVRIKEHCESGQYQSTTDAENEFRRLVESDLACK
Ga0209131_10074055	3300026320	Grasslands Soil	METAFLDRLANQLKANKSATCRRAIQRILVRIKEHYESGQYRTPSDAETEFRRLVESDLACK
Ga0257150_10586971	3300026356	Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHYESGQYKSATDAENEFRRLVESDLACK
Ga0257163_10370122	3300026359	Soil	TLMETDFLDRLANELRTNKTATCRRAIQRILVRIKEHCESGQYLRTTDAENEFRRLVESDLPCK
Ga0257176_10402482	3300026361	Soil	RQILMETGFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYKSTTEAENEFRRLVESDLACK
Ga0179593_10204222	3300026555	Vadose Zone Soil	METGFLDRLANQLKINKSPTCRRVIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK
Ga0179587_103374781	3300026557	Vadose Zone Soil	NQLKVNKSATCRRAIQRILVRIREHCESGQYKSTTEAENEFRRLVESDLACK
Ga0179587_103590121	3300026557	Vadose Zone Soil	METDFLDRLANQLMANKTATCRRAIQRILVRMKEHCETGQYKSTTDAENEFRRLVESDLACK
Ga0179587_108083871	3300026557	Vadose Zone Soil	METDFLDRLASQLRVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDL
Ga0209179_10893852	3300027512	Vadose Zone Soil	METGFLDRLANQLKVNKSATCRRAIQRILHRMKEHCERGQYQTTTEAENEFRRLVDSDLACK
Ga0209331_10113662	3300027603	Forest Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHRESGQYQSTTDAESEFRRLVESDLACK
Ga0209736_10576332	3300027660	Forest Soil	METTFLDRLASQLRVNKSATCRRAIQRILVRIKEHCESGQYRSATDAENEFRRLVESDLACK
Ga0209588_10128886	3300027671	Vadose Zone Soil	GFLDRLANQLKINKSATCRRAIQRILVRIKEHYESGQYKTTTDAENEFRRLVESDLACK
Ga0209588_10209484	3300027671	Vadose Zone Soil	MDTAFLDRLATQLKVGKSAACCRAIERILVRMKEHYESGQYHSTTEAENEFRRLVETDLACK
Ga0209588_10463992	3300027671	Vadose Zone Soil	METSFLDRLANQLKANKSAICRRAIQRILVRMKQHCETGQYQSTTDAENEFRRLVESDLACK
Ga0209588_10500092	3300027671	Vadose Zone Soil	METMYYIGVETGFLVRLANQLKANKSASCRRAIQRILVRIKEHCESGQYNSTTAAENEFRRLVESHLACR
Ga0209588_11167942	3300027671	Vadose Zone Soil	TPMETGFLDRLANQLKINKSATCRRAIQRILVRMKEHCESGQYRSTTDAENEFRRLVESDLACK
Ga0209488_100293397	3300027903	Vadose Zone Soil	METDFLDRLANQLKVNKSATCRRAIQRILVRIKEHCESGQYGSTTEAENEFRRLVESDLACK
Ga0209488_103824931	3300027903	Vadose Zone Soil	MAGRQIRLRSASFRGAGGMKTDFLDRLANQLKLNKSATCRRAIQRILVRIKEHCESGQYRSTTEAENEFRRLVESDLACK
Ga0209488_106783292	3300027903	Vadose Zone Soil	METGFLDRLANQLKINKSAPCRRAIQRILVRIKEHCESGQYKSNTDAENEFRRLVESDLACK
Ga0209488_109478891	3300027903	Vadose Zone Soil	FPATYSPTLMETDFLDRLASQLRVNKSATCRRAIQRILVRIKEHCESGEYQTASEAENEFRRLVESDLACK
Ga0209526_100719362	3300028047	Forest Soil	METAFLDRLANQLKANKTATCRRAIQRILVRIKEHCETGQYQSTTDAENEFRRLVDTDLACK
Ga0137415_100088299	3300028536	Vadose Zone Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHCETGQYKSTTEAENEFRRLVESDLACK
Ga0137415_101058735	3300028536	Vadose Zone Soil	METDFLDRLANQLKANKGAACRRAIQRILVRIKEHCESGQYQSTTDAESEFRRLVESDLACK
Ga0137415_101875982	3300028536	Vadose Zone Soil	METGFLDRLANQLKANKGAACRRAIQRILVRIKEHYESGQYQSIRDAENEFRRLVESDLACK
Ga0137415_104361211	3300028536	Vadose Zone Soil	METMYYIGMETGFLVRLANQLKANKSASCRRAIQRILVRIKEHCESGQYNSATDAENEFRRLVESDLACR
Ga0137415_111348531	3300028536	Vadose Zone Soil	MSTEFLDRLATELKIGKSAACCRAIQRILDRMKQHYESGQYHSAAEAEDEFRRLVETDLACK
Ga0137415_111914761	3300028536	Vadose Zone Soil	METGFLDRLANQLKANKSAACRRAIQRILVRIKEHCESGQYQSTTDAESEF
Ga0073994_123795234	3300030991	Soil	METGFLDRLANQLKANKTATCRRAIQRILVRMKEHCDSGQYRSTTDAENEFRRLVESDLACK
Ga0307476_100355132	3300031715	Hardwood Forest Soil	METGFLDRLANQLEANKTASCRRAIQRILVRIKEHYESGQYKSTTDAENEFRRLVESDLACK
Ga0307470_110322451	3300032174	Hardwood Forest Soil	METGFLDRLANQLKANKSATCRRAIQRILVRIKEHYESGQYQSTTDAENEFRRLVESDLACK
Ga0307471_1001390832	3300032180	Hardwood Forest Soil	METGFLDRLANQLKANKTAICRRAIQRILVRIKEHYEGGQYKSTTDAESEFRRPIESDLACK
Ga0307471_1017511462	3300032180	Hardwood Forest Soil	METGFLDRLANQLKANKTATCRRAIQRILVRIKEHYESGQYKSTTDAENEFRRLVESDLACQ
Ga0307472_1026225211	3300032205	Hardwood Forest Soil	VSSDFLDRLASQLRVNKSAACRRAIQRILVRVKEHYESGQYKSTTDAENEFRRLVESDLACK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048797

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences