Metagenome / Metatranscriptome Family F049966

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049966
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	68 residues
Representative Sequence	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSESYRVLAIQTGHGPFDYVIEVEWLASLGPSDFEPA
Number of Associated Samples	111
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.34 %
% of genes near scaffold ends (potentially truncated)	30.14 %
% of genes from short scaffolds (< 2000 bps)	86.30 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.151 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.753 % of family members)
Environment Ontology (ENVO)	Unclassified (29.452 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 39.80% Coil/Unstructured: 60.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF03640	Lipoprotein_15	3.42
PF04545	Sigma70_r4	2.05
PF13442	Cytochrome_CBB3	1.37
PF05901	Excalibur	1.37
PF03673	UPF0128	0.68
PF08207	EFP_N	0.68
PF01494	FAD_binding_3	0.68
PF07874	DUF1660	0.68
PF07732	Cu-oxidase_3	0.68
PF00990	GGDEF	0.68
PF06803	DUF1232	0.68
PF07228	SpoIIE	0.68
PF00082	Peptidase_S8	0.68
PF05103	DivIVA	0.68
PF14534	DUF4440	0.68
PF12389	Peptidase_M73	0.68
PF03466	LysR_substrate	0.68
PF04237	YjbR	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	3.42
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.37
COG0231	Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	Translation, ribosomal structure and biogenesis [J]	0.68
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.68
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.68
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.68
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.68
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.68
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.15 %
Unclassified	root	N/A	6.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.15 %
Unclassified	root	N/A	6.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.15 %
Unclassified	root	N/A	6.85 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	86.99 %
Unclassified	root	N/A	6.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	85.62 %
Unclassified	root	N/A	6.85 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	79.45 %
Unclassified	root	N/A	6.85 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.68 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	78.77 %
Unclassified	root	N/A	6.85 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.68 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.68 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	78.77 %
Unclassified	root	N/A	6.85 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.68 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.68 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	78.77 %
Unclassified	root	N/A	6.85 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.68 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.68 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	78.77 %
Unclassified	root	N/A	6.85 %
Deinococcus alpinitundrae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus alpinitundrae	0.68 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.68 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11195517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1576	Open in IMG/M
3300000953\|JGI11615J12901_10541486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300000956\|JGI10216J12902_102056255	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3121	Open in IMG/M
3300000956\|JGI10216J12902_106731115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1720	Open in IMG/M
3300000956\|JGI10216J12902_107080424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1485	Open in IMG/M
3300000956\|JGI10216J12902_116110651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300000956\|JGI10216J12902_123650806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300002909\|JGI25388J43891_1069761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300004114\|Ga0062593_100887865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	899	Open in IMG/M
3300004114\|Ga0062593_101203977	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300004156\|Ga0062589_100295931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1248	Open in IMG/M
3300004157\|Ga0062590_103022144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300005166\|Ga0066674_10028463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2459	Open in IMG/M
3300005166\|Ga0066674_10132202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300005178\|Ga0066688_10096781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1798	Open in IMG/M
3300005184\|Ga0066671_10211824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300005336\|Ga0070680_101550521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300005366\|Ga0070659_101094718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	702	Open in IMG/M
3300005434\|Ga0070709_10916794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	693	Open in IMG/M
3300005440\|Ga0070705_100567752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300005445\|Ga0070708_100263387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1621	Open in IMG/M
3300005445\|Ga0070708_101261781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300005445\|Ga0070708_101501903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300005450\|Ga0066682_10329225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	985	Open in IMG/M
3300005451\|Ga0066681_10217287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1149	Open in IMG/M
3300005454\|Ga0066687_10610073	Not Available	648	Open in IMG/M
3300005468\|Ga0070707_101834106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300005518\|Ga0070699_100067051	All Organisms → cellular organisms → Bacteria	3116	Open in IMG/M
3300005561\|Ga0066699_10567640	Not Available	814	Open in IMG/M
3300005576\|Ga0066708_10070378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2011	Open in IMG/M
3300005578\|Ga0068854_102008746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300005618\|Ga0068864_101764287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300006046\|Ga0066652_100058879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2935	Open in IMG/M
3300006046\|Ga0066652_100202474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1708	Open in IMG/M
3300006049\|Ga0075417_10707841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300006058\|Ga0075432_10184103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	819	Open in IMG/M
3300006163\|Ga0070715_10412385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300006847\|Ga0075431_100758922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	945	Open in IMG/M
3300006904\|Ga0075424_100736403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1052	Open in IMG/M
3300006914\|Ga0075436_100070088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2423	Open in IMG/M
3300009011\|Ga0105251_10257881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	786	Open in IMG/M
3300009012\|Ga0066710_104857284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300009137\|Ga0066709_100309517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2150	Open in IMG/M
3300009137\|Ga0066709_102137637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	773	Open in IMG/M
3300009147\|Ga0114129_10108988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3822	Open in IMG/M
3300009147\|Ga0114129_11386067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	868	Open in IMG/M
3300009147\|Ga0114129_11458940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300009156\|Ga0111538_11628861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus alpinitundrae	813	Open in IMG/M
3300009174\|Ga0105241_10644110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	962	Open in IMG/M
3300009174\|Ga0105241_10652721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	956	Open in IMG/M
3300009789\|Ga0126307_10964723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300010044\|Ga0126310_10000534	All Organisms → cellular organisms → Bacteria	13339	Open in IMG/M
3300010301\|Ga0134070_10035153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1666	Open in IMG/M
3300010320\|Ga0134109_10376498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300010323\|Ga0134086_10423448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300010329\|Ga0134111_10115242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1041	Open in IMG/M
3300010333\|Ga0134080_10135153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1036	Open in IMG/M
3300010333\|Ga0134080_10630075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300010333\|Ga0134080_10678131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300010335\|Ga0134063_10128369	Not Available	1165	Open in IMG/M
3300010335\|Ga0134063_10577486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300010336\|Ga0134071_10424608	Not Available	679	Open in IMG/M
3300010371\|Ga0134125_11175522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300010396\|Ga0134126_11903030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300010396\|Ga0134126_12487685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300010401\|Ga0134121_10994201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	823	Open in IMG/M
3300010403\|Ga0134123_10315698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1393	Open in IMG/M
3300011003\|Ga0138514_100019050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1214	Open in IMG/M
3300011003\|Ga0138514_100030040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300012198\|Ga0137364_10116608	Not Available	1898	Open in IMG/M
3300012198\|Ga0137364_10536284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300012201\|Ga0137365_10145917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1778	Open in IMG/M
3300012204\|Ga0137374_10537249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	901	Open in IMG/M
3300012208\|Ga0137376_11330492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300012208\|Ga0137376_11431660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300012209\|Ga0137379_11677137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300012210\|Ga0137378_10246850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1661	Open in IMG/M
3300012210\|Ga0137378_10766497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	877	Open in IMG/M
3300012285\|Ga0137370_10055094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2144	Open in IMG/M
3300012350\|Ga0137372_10437755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	983	Open in IMG/M
3300012350\|Ga0137372_10625947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300012354\|Ga0137366_10027959	All Organisms → cellular organisms → Bacteria	4385	Open in IMG/M
3300012356\|Ga0137371_11308327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300012903\|Ga0157289_10338119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300012957\|Ga0164303_10521947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	765	Open in IMG/M
3300012961\|Ga0164302_10398283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	938	Open in IMG/M
3300012975\|Ga0134110_10506838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549	Open in IMG/M
3300012977\|Ga0134087_10619658	Not Available	563	Open in IMG/M
3300012977\|Ga0134087_10649113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300012985\|Ga0164308_11308610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300012987\|Ga0164307_10544183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	885	Open in IMG/M
3300012989\|Ga0164305_11861948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300012989\|Ga0164305_12144514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300013296\|Ga0157374_12834514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300013308\|Ga0157375_10770347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1112	Open in IMG/M
3300014150\|Ga0134081_10022763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1774	Open in IMG/M
3300014497\|Ga0182008_10346859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	786	Open in IMG/M
3300014497\|Ga0182008_10391000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300015356\|Ga0134073_10048160	Not Available	1134	Open in IMG/M
3300015356\|Ga0134073_10132681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300015357\|Ga0134072_10035491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1324	Open in IMG/M
3300015358\|Ga0134089_10360082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300017654\|Ga0134069_1150578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300018027\|Ga0184605_10109972	Not Available	1221	Open in IMG/M
3300018027\|Ga0184605_10295799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300018054\|Ga0184621_10083398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1114	Open in IMG/M
3300018054\|Ga0184621_10250566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300018061\|Ga0184619_10039869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2014	Open in IMG/M
3300018081\|Ga0184625_10128723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1318	Open in IMG/M
3300018431\|Ga0066655_10033591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2522	Open in IMG/M
3300018431\|Ga0066655_10253129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1125	Open in IMG/M
3300018431\|Ga0066655_10346120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	975	Open in IMG/M
3300018433\|Ga0066667_10609694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	911	Open in IMG/M
3300018433\|Ga0066667_11177725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300019875\|Ga0193701_1007443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2122	Open in IMG/M
3300019875\|Ga0193701_1014751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	1570	Open in IMG/M
3300019887\|Ga0193729_1004840	All Organisms → cellular organisms → Bacteria	6487	Open in IMG/M
3300020018\|Ga0193721_1106690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300020022\|Ga0193733_1067427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300020022\|Ga0193733_1101772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	802	Open in IMG/M
3300021413\|Ga0193750_1004833	All Organisms → cellular organisms → Bacteria	3544	Open in IMG/M
3300021445\|Ga0182009_10115901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1240	Open in IMG/M
3300022694\|Ga0222623_10386875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300022756\|Ga0222622_10158255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1468	Open in IMG/M
3300022756\|Ga0222622_11382413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300025885\|Ga0207653_10005293	All Organisms → cellular organisms → Bacteria	4032	Open in IMG/M
3300025910\|Ga0207684_10587945	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300025929\|Ga0207664_10868755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300025938\|Ga0207704_11023014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300026067\|Ga0207678_11382202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300026095\|Ga0207676_11554242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300026277\|Ga0209350_1125946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300026300\|Ga0209027_1023817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2319	Open in IMG/M
3300027907\|Ga0207428_10079537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2563	Open in IMG/M
3300028715\|Ga0307313_10202438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300028796\|Ga0307287_10269428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	644	Open in IMG/M
3300028814\|Ga0307302_10314153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300028819\|Ga0307296_10059565	Not Available	2022	Open in IMG/M
3300028828\|Ga0307312_10490135	Not Available	811	Open in IMG/M
3300028828\|Ga0307312_10754055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300028878\|Ga0307278_10551477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300031716\|Ga0310813_11016307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300031858\|Ga0310892_10210033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1177	Open in IMG/M
3300031938\|Ga0308175_101150746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	861	Open in IMG/M
3300031996\|Ga0308176_12222284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300034680\|Ga0370541_012915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.25%
Host-Associated	Host-Associated	15.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.08%
Plants	Host-Associated → Plants	15.75%
Aquatic	Environmental → Aquatic	6.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.01%
Sediment	Environmental → Aquatic → Sediment	6.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.37%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.64%
Loam	Environmental → Terrestrial → Soil → Loam	8.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.37%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.37%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.16%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.05%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.37%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.11%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.05%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.37%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.37%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.37%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.37%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.37%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_111955172	3300000891	Soil	MVYEVLVVSDGGGGERFAIERDAPLSDGQIFEQGSNTYRILTIQPGHGPFDGIVEAEWLGSSGPGELAPT*
JGI11615J12901_105414861	3300000953	Soil	MVYEVLVVSDGGGGERFAIERDAPLSDGDIFEQDSNSYRVLTIQPGHGPFDGIIEAEW
JGI10216J12902_1020562554	3300000956	Soil	MLYDVLVVSNGGGGKRFTTERDSPLSVGDTFEQDAETYRVLAIQTGHGPFDYVEVESLTSSGPSEFASAKP*
JGI10216J12902_1067311152	3300000956	Soil	MIYDVLVVSNVGGERRFTTERDAPLSNGETFEQESESYRVLAIQAGHGPFDAVIEAEWLASSEPGAPS*
JGI10216J12902_1070804243	3300000956	Soil	MLYDVLVVSGADGEKRFTTERDAPLSVGDTFEQDAESYRVLAIQTGHGPFDGVIEAEWLASSGSEFAPA*
JGI10216J12902_1161106511	3300000956	Soil	MLYDVLIVANGGGEKRFTTERDAPLSVGDTLEQDSEPYRVLVVEPGHGPFEGVIEAEWLG
JGI10216J12902_1236508061	3300000956	Soil	MIYDVLVLSDEGGERRFTTERDAPLSNGETFEEDSQSYRVLAIQAGHGPFDAVIEAEWLASSEPGAPS*
JGI25388J43891_10697611	3300002909	Grasslands Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASLGPSESAPR*
Ga0062593_1008878651	3300004114	Soil	MVYEVLVVSDGGGGERFAIERDAPLSDGQIFEQGSNTYRILTIQPGHGPFDGIVEAEWLGSSGPGE
Ga0062593_1012039772	3300004114	Soil	MIYDVLVVSNVGGERRFTTERDAPLSDGETFEEESESYRVLAIQAGHGPFDAVIEAEWLASSEPGAPP*
Ga0062589_1002959313	3300004156	Soil	MIYDVLVLSDEGGERRFTTERDAPLANGETFEEDSESYRVLAIQAGHGPFDAVIEAEWLARSEPGAPS*
Ga0062590_1030221441	3300004157	Soil	MIYDVLVVSNEAGERRFTTERDAPLSNGETFEEESESYRVLAILAGHGPFDAVIEAEWLASSEPGAPS*
Ga0066674_100284632	3300005166	Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0066674_101322021	3300005166	Soil	MLYDVLVVSNGGGGKRLTTERDAPLSVGDTFEQDAESYRVLAIQTGHGPFDYVIEAEWLASSGPSEVA*
Ga0066688_100967814	3300005178	Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEWLASSGPSKVEPA*
Ga0066671_102118242	3300005184	Soil	MLYESGVVSNGGGGEATIERAAPLPVGGTFEQDSELYRVLAIQPGHGPFDGVIETE*
Ga0070680_1015505212	3300005336	Corn Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQESELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0070659_1010947181	3300005366	Corn Rhizosphere	AKTMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0070709_109167941	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTDRDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0070705_1005677523	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQESELYRVLAIQIGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0070708_1002633871	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAEDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0070708_1012617812	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLIVSNGGGGERFTTEADAPLSVGDTFEHDSESYRVLAIQTGHGPFDGVIEAEWLANA*
Ga0070708_1015019032	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLCDVLVVSNGGGGKRFTTERDSPLSVGDTFEQDADSYRALAIQTGHGPFDYVVEAEWLANLGPSEFEPA*
Ga0066682_103292253	3300005450	Soil	MLYDVLVVSNGGGGKRLTTERDAPLSVGDTFEQDAESYRILAIQTGHGPFDYVIEAEWLASS
Ga0066681_102172871	3300005451	Soil	NGSGERFTFERDSPLSVGDTFEQDSEPYRELAMHTGHGPIDAVIEAESLASSGSSAQS*
Ga0066687_106100732	3300005454	Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEWLA
Ga0070707_1018341061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLCDVLVVSNGGGGKRFTTERDSPLSVGDTFEQDADSYRALAIQTGHGPFDYVVEAEWLANLGPSEFE
Ga0070699_1000670511	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0066699_105676402	3300005561	Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEWLASSGP
Ga0066708_100703781	3300005576	Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEW
Ga0068854_1020087462	3300005578	Corn Rhizosphere	AKTMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQESELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0068864_1017642871	3300005618	Switchgrass Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQTGQGPFDYVIEVEWLANVGPSDFEPA*
Ga0066652_1000588792	3300006046	Soil	MLYEVLVVSNGSGERFTFERDSPLSVGDTFEQDSEPYRVLAMHTGHGPIDAVIEAESLASSGSSAQS*
Ga0066652_1002024742	3300006046	Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTLEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPDESAPA*
Ga0075417_107078412	3300006049	Populus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDSVIEVEWLTNVGPSDFEPA*
Ga0075432_101841031	3300006058	Populus Rhizosphere	MMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQNGHGPFDYVIEVEWLASVGPSDFEPA*
Ga0070715_104123852	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SARRYRAKTMLYDVLVVSNGGGGKRFTTDRDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0075431_1007589223	3300006847	Populus Rhizosphere	MIYDVLVVSNVGGERRFTTERDAPLSDGETFEEESESYRVLAIQAGHGPFDAVIEAEWLASSEPGAPS*
Ga0075424_1007364032	3300006904	Populus Rhizosphere	VEKMMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQNGHGPFDYVIEVEWLASVGPSDFEPA*
Ga0075436_1000700883	3300006914	Populus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQNGHGPFDYVIEVEWLASVGPSDFEPA*
Ga0105251_102578811	3300009011	Switchgrass Rhizosphere	VAIRGASGTRGYRAETMIYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQTGQGPFDYVIEVEWLANVGPSDFEPA*
Ga0066710_1048572841	3300009012	Grasslands Soil	MLYDVLVVSNVGGGKRFTTERDAQLSVGDTFEQDSESYRVLAIQPGHGPFDAVIEAEWLGIS
Ga0066709_1003095171	3300009137	Grasslands Soil	MLYDVLVVSKGGGEKRFTTERDAPLSVGDIFEQDSESYRVLAIQPGHGPFDGVLEAEWLASSGPSEFAPP*
Ga0066709_1021376371	3300009137	Grasslands Soil	MVYDVLVVSNGRGGDRFSTEPGAPLSLGDTFEQDSESYRVLAIQPGHGPFDAVIEAEWLGIS*
Ga0114129_101089885	3300009147	Populus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQIGHGPFDYVIEVEWLASPGP*
Ga0114129_113860671	3300009147	Populus Rhizosphere	MIYDVLVVSNVGGDRRFTTERDAPLSDGETFEEESESYRVLAIQAGHGPFDAVIEAEWLASSEPGAPS*
Ga0114129_114589401	3300009147	Populus Rhizosphere	KTMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0111538_116288612	3300009156	Populus Rhizosphere	MIYDVLVVSDVVGERRFTTEREAAFATGETFEQDSESYRVLAIHPGYGPLDGVIEAEWLASSEPGAPA*
Ga0105241_106441102	3300009174	Corn Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGETFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0105241_106527212	3300009174	Corn Rhizosphere	YRAKTMVYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0126307_109647232	3300009789	Serpentine Soil	MLYDVLVASDVEGERRFAIERDTPLSDGDEFKYESGSYRVLSIQPGHGPFDGVIQAEWLGSSGLGQLAP*
Ga0126310_1000053415	3300010044	Serpentine Soil	MLYDVLVVSNGDGGKRFTAERDSPLSVGDTFEQDAEPYRVLAIQTGHGPFDYVIEAEWLASLEGR*
Ga0134070_100351531	3300010301	Grasslands Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEW
Ga0134109_103764982	3300010320	Grasslands Soil	LVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAE*
Ga0134086_104234481	3300010323	Grasslands Soil	VGATVEHVLYDVLVVSNSGGEKRFTTERDAPLSVGDIFERDSESYRVLAIQIGHGPFDGVIEAE*
Ga0134111_101152421	3300010329	Grasslands Soil	MVYEVLVHSSGGARFTIQRDASLADGDTFEQDSESYRVLAIQPGHGPFDGIIEAEWLASS
Ga0134080_101351532	3300010333	Grasslands Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGAGESAPA*
Ga0134080_106300751	3300010333	Grasslands Soil	CNTMLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASLGPSESAPR*
Ga0134080_106781311	3300010333	Grasslands Soil	LRRTSRLDGGGQKRFTTEREAPLSVGDSFERDGESYRVLAIQTGHGPFDGVVEAESLASLGPSEFAPP*
Ga0134063_101283691	3300010335	Grasslands Soil	YDVLVVSNGGGKRFTTERDEPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0134063_105774862	3300010335	Grasslands Soil	MLYDVLVVSNGGGGKRFTTVRDAPPSVGDTFEQDSESYRVLAIQPGHGPFDGVIEAEWLGSSGPGESAPA*
Ga0134071_104246081	3300010336	Grasslands Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDAESYRVLAIQTGHGPFDYVIEAEWLASSGPSKVEPA*
Ga0134125_111755222	3300010371	Terrestrial Soil	MLYDVLVGSNGGGGKRFTTDRDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0134126_119030302	3300010396	Terrestrial Soil	GGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0134126_124876851	3300010396	Terrestrial Soil	GKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0134121_109942011	3300010401	Terrestrial Soil	MLYDVLVGSNGGGGKRFTTDRDASLSVGDTFAQDSELYRVLAIQTGQGSFDYVIEVEWLPNVGPSDFEPA*
Ga0134123_103156983	3300010403	Terrestrial Soil	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQPGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0138514_1000190502	3300011003	Soil	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSESYRVLAIQTGHGPFDYVIEVEWLASLGPSDFEPA*
Ga0138514_1000300402	3300011003	Soil	RRYRAKTMLYDVLVVSNGGGGKRLTTERDASLSVGDTFEQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0137364_101166082	3300012198	Vadose Zone Soil	MLYDVLVVSNGGGQRRFTTEREAALSVGDSFEQDGESYRVLAIQTGHGPFDGIVEAEWLASLGPSEFAPP*
Ga0137364_105362841	3300012198	Vadose Zone Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAE
Ga0137365_101459172	3300012201	Vadose Zone Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGHTFEQDSESYRVLAIQTGHGPFDYVIEAEWLASSGPSKVEPA*
Ga0137374_105372491	3300012204	Vadose Zone Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGP
Ga0137376_113304922	3300012208	Vadose Zone Soil	MLYDILVVSNGGGGKRFTAERDAPLCVGHTFEQDSESYRVLAIQTGHGPFDYVIEAEWLASSGPSKVEPA*
Ga0137376_114316602	3300012208	Vadose Zone Soil	MLYEVLVVSNGGGGERFTTEPDAPLSVGDTFEQDSEPYRVLAIQPGHGPFEGVIEAEWLGSSGPGEFAP*
Ga0137379_116771371	3300012209	Vadose Zone Soil	MLYDVLVVSNGGGKRITTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0137378_102468501	3300012210	Vadose Zone Soil	GGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0137378_107664971	3300012210	Vadose Zone Soil	MLYDVLVVSNSGGGKRFSTERDAPLSVGDTFEQDSEPYRVVAIQTGHGPFDYVIEAEWLASPGPSEFEPA*
Ga0137370_100550944	3300012285	Vadose Zone Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTLEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0137372_104377552	3300012350	Vadose Zone Soil	MLYDVLVVSNGSGGKRFTTERDAPLSVGDTFEQDSESYRVLATQTGHGPFDYVIEVEWLSSSGPSEVEPA*
Ga0137372_106259471	3300012350	Vadose Zone Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLG
Ga0137366_100279596	3300012354	Vadose Zone Soil	MLYDVLVVSGADGEKRFTTERDAPLSVGDTFEQDAESYRVLAIQTGHGPFDGVIEAEWLPSSGSEFAPA*
Ga0137371_113083271	3300012356	Vadose Zone Soil	TRGPWALPWNTMLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0157289_103381191	3300012903	Soil	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0164303_105219472	3300012957	Soil	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFEQDSESYRVLASQFGHGPFDGVIEAEWLGSSGPGEFGANA*
Ga0164302_103982831	3300012961	Soil	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFEQDSESYRVLASQIGHGPFDGVIEAEWLGSSGPGEFGANA*
Ga0134110_105068381	3300012975	Grasslands Soil	NGGGGKRFTAERDAPLSVGQTFEQDSESYRVLVIQTGHGPFDYVIEAEWLASSGPSKVEPA*
Ga0134087_106196582	3300012977	Grasslands Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEWVASSGPSKVEPA*
Ga0134087_106491131	3300012977	Grasslands Soil	MLYDVLVVSNGGGGKRFTTERDAPPSVGDTFEQDAESYRVLAIQTGHGPFDSVIEAEWLASSGPSEVA*
Ga0164308_113086102	3300012985	Soil	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDGVIEAESLGSSEPGESAP*
Ga0164307_105441833	3300012987	Soil	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQIGHGPFDGVIEAEWLGSSGPGEFGANA
Ga0164305_118619482	3300012989	Soil	MVYDVLVVSGGGGGRRFTTERDAPLSVGDTFEQDSESYRVLASQIGHGPFDGVIEAEWLGSSGPGEFGANA*
Ga0164305_121445142	3300012989	Soil	VSNGGGKRFTTERDASLSVGDSFEQDSESYRVLAIQPGQGPFDSVIEAEWLGSSGPGEFAP*
Ga0157374_128345142	3300013296	Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQAGHGPFDYVIEVEWLAIVGPSDFEPA*
Ga0157375_107703471	3300013308	Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEW
Ga0134081_100227633	3300014150	Grasslands Soil	MLYDVLVVSNGGGKRLTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0182008_103468591	3300014497	Rhizosphere	MVYEVLVVSDGGGGERFAIERDAPLSDGDIFEQDSNSYRVLTIQPGHGPFDGIIEAEWLGSSGPGELAVP*
Ga0182008_103910001	3300014497	Rhizosphere	MLYDVLVVSNGGGGKRLTTERDSPLSVGDTFEQDSESYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA*
Ga0134073_100481602	3300015356	Grasslands Soil	LVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA*
Ga0134073_101326812	3300015356	Grasslands Soil	MLYDVLVVSNGGGKRFTTERDEPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPDESAPA*
Ga0134072_100354911	3300015357	Grasslands Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASPGLSE
Ga0134089_103600821	3300015358	Grasslands Soil	NTMLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASLGPSESAPR*
Ga0134069_11505782	3300017654	Grasslands Soil	VGGEPEGVGATVEHVLYDVLVVSNSGGEKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA
Ga0184605_101099721	3300018027	Groundwater Sediment	MLYDVLVVSNGGGQKRFTTEREAPLSVGDSFEQDGESYRVLAIQTGHGPFDGVVEAESLASLGPSEFAPP
Ga0184605_102957991	3300018027	Groundwater Sediment	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFDQDSESYRVLAIQPGQGPFDAVIEAEWLGSSGPGEFGANA
Ga0184621_100833983	3300018054	Groundwater Sediment	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFDQDSEAYRVLAIQPGQGPFDSVIEAEWLGSSGLGELGANA
Ga0184621_102505661	3300018054	Groundwater Sediment	MLYDVLVISNGDGGERFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFDGVIEAERLASSGPSESAPR
Ga0184619_100398693	3300018061	Groundwater Sediment	MLYEVLVVSNGEGGGERFTIERDASLSDGETFEQDSESYRVLAIQPGHGPFDGVIEAESLANS
Ga0184625_101287232	3300018081	Groundwater Sediment	MIYDVLVVSDVDRERRFTTERDAPLSNGDTFEQDSESYRVLAIQPGRGPFDGVIKAEWLASSEPGELRNPAN
Ga0066655_100335912	3300018431	Grasslands Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTLEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPDESAPA
Ga0066655_102531292	3300018431	Grasslands Soil	MLYDVLVVSNGGGGKRFTAERDAPLSVGQTFEQDSESYRVLAIQTGHGPFDYVIEAEWLASSGPSKVEPA
Ga0066655_103461202	3300018431	Grasslands Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDPESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA
Ga0066667_106096941	3300018433	Grasslands Soil	MLYDVLVVSNGGGKRFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDCVIEAEWLGSSGPGESAPA
Ga0066667_111777252	3300018433	Grasslands Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASLGPSESAPR
Ga0193701_10074433	3300019875	Soil	MLYDVLVISNGDGGERFTNEADAPLSVGDIFEQDSDSYRVLAIQTGHGPFDGVIEAE
Ga0193701_10147514	3300019875	Soil	MLYDVLVVSNGGGGKRFTTERDAPLSVGDTFDQYSEAYRVLAIQPGQGPFDSVIEAEWLGSSGLGELGANA
Ga0193729_10048404	3300019887	Soil	MVYDVLVVSNGGGKRFTTERDASLSVGDSFEQDSESYRVLAIQPGQGPFDSVIEAECLDSSGPGEFGANA
Ga0193721_11066901	3300020018	Soil	MLYDVLVVSNGGGQKRFTTEREAPLSVGDSFEQDGESYRVLAIQTGHGPFDGVVEAEWLASLDPANEPT
Ga0193733_10674272	3300020022	Soil	MLYEVLVVSNGGGGERFTTEPDAPLSVGDTFEQDSEPYRVLAIQPGHGPFEGVIEAEWLGSSEPGEFAP
Ga0193733_11017721	3300020022	Soil	MVYDVLVVSNGGGKRFTTDRDASLSVGDSFEQDSESYRVLAIQPGQGPFDSVIEAECLDSSGPGEFGANA
Ga0193750_10048333	3300021413	Soil	MGTLVALPCNTMVYDVLVVSNGGGKRFTTERDASLSVGDSFEQDSESYRVLAIQPGQGPFDSVIEAECLDSSGPGEFGANA
Ga0182009_101159011	3300021445	Soil	MLYDVLVVSNGGGGKRLTTERDAPLCVGDTFEQDSESYRVLAIETGHGPFDYVIEVEWLASLGRSDFEPA
Ga0222623_103868751	3300022694	Groundwater Sediment	MIYDVLVVSDVDGERRFTTERDAPLSNGDTFEQGSESYRVLAIQPGHGPVDGVIKAEWLASSEPGEPD
Ga0222622_101582551	3300022756	Groundwater Sediment	MLYEVLVVANGGDGERFTIERDEPFSDSDTFEQGSDSYRVLAIQPGHGPLDGVIEAERLGSVGPGEFGSP
Ga0222622_113824131	3300022756	Groundwater Sediment	ALTCNTMLYDVLVISNGDGGERFTNEADAPLSVGDIFEQDSDSYRVLAIQTGHGPFDGVIEAERLASSGPSESAPR
Ga0207653_100052933	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA
Ga0207684_105879451	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLYDVLIVSNGGGGERFTTEADAPLSVGDTFEHDSESYRVLAIQTGHGPFDGVIEAEWLANA
Ga0207664_108687552	3300025929	Agricultural Soil	MVYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQAGHGPFDYVIEVEWLAIVGPSDFEPA
Ga0207704_110230142	3300025938	Miscanthus Rhizosphere	NGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEP
Ga0207678_113822022	3300026067	Corn Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQESELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA
Ga0207676_115542421	3300026095	Switchgrass Rhizosphere	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFEQDSELYRVLAIQTGQGPFDYVIEVEWLANVGPSDFEPA
Ga0209350_11259461	3300026277	Grasslands Soil	VLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASPGPSESAPR
Ga0209027_10238171	3300026300	Grasslands Soil	MLYDVLVVSNGDGGKRFTNEADAPLSVGDIFEQDSESYRVLAIQTGHGPFAGVIEAEWLASPGPSESAPR
Ga0207428_100795373	3300027907	Populus Rhizosphere	MMLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQDSELYRVLAIQNGHGPFDYVIEVEWLASVGPSDFEPA
Ga0307313_102024381	3300028715	Soil	MIYDVLVVSDVDGERRFTTERDTPLSNGDTFEQDSESYRVLAIQPGRGPFDGVIKAEWLASSEPGELRNPAN
Ga0307287_102694282	3300028796	Soil	VLVVSDGEGERRFTFERDTPLSDGDEFKYQSESYRVLSIQPDHGPFDGVIEAEWLGSSGTGPPRG
Ga0307302_103141532	3300028814	Soil	MLYDVLVVSDGEGERRFTFERDTPLSDGDEFKYQSESYRVLSIQPDHGPFDGVIEAEWLGSSGTGPPRG
Ga0307296_100595652	3300028819	Soil	MIYDVLVVSDVDGERRFTTERDTPLSNGDTFEQDSESYRVLAIQPGRGPFDGVIKADWLASSEPGELRNPAN
Ga0307312_104901352	3300028828	Soil	VVSNGGGQKRFTTEREAPLSVGDSFEQDGESYRVLAIQTGHGPFDGVVEAEWLASSGPSEFAPP
Ga0307312_107540552	3300028828	Soil	NTMLYDVLVVSNGGGGKRFTTERDVALSVGDTFDQDSESYRVLAIQRGQGPFESVIEAEWLGSSGPGEFGANA
Ga0307278_105514771	3300028878	Soil	MLYDVLVVSNGGGDKRFTAERDAPLSVGHTFEQDSESYRVLAIQTGHGPFDYVIEAERLASSGPSKVEPA
Ga0310813_110163072	3300031716	Soil	LVVSNGGGGKRFTTERDASLSVGDTVEQDSELYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA
Ga0310892_102100332	3300031858	Soil	MLYDVLVVSNGGGGKRFTTERDASLSVGDTFAQESESYRVLAIQTGHGPFDYVIEVEWLANVGPSDFEPA
Ga0308175_1011507462	3300031938	Soil	MLYDVLVVSNGGGGKRFTTERDSPLSVGDTFDQDADSYRVLAIQTGHGPFDHVIEAEWLGSSGPGEFGANA
Ga0308176_122222841	3300031996	Soil	TMLYDVLVVSNGGGGKQFTTERDAPLSVGDTFEQDSESYRVLAIQPGHGPFDAVIEAEWLGIS
Ga0370541_012915_122_331	3300034680	Soil	MLYDVLVVSNGGGQKRFTTEREAPLSVGDSFEQDGESYRVLAIQTGHGPFDGVVEAESLASLDPANEPT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049966

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences