Metagenome / Metatranscriptome Family F050291

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050291
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	90 residues
Representative Sequence	MALTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Number of Associated Samples	96
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.28 %
% of genes near scaffold ends (potentially truncated)	41.38 %
% of genes from short scaffolds (< 2000 bps)	90.34 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.828 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (26.897 % of family members)
Environment Ontology (ENVO)	Unclassified (29.655 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.897 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.17% β-sheet: 23.53% Coil/Unstructured: 56.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.296.1.2: PF0168-like	d1yb3a1	1yb3	0.63883
d.20.1.4: UFC1-like	d2z6oa_	2z6o	0.60712
c.51.6.2: XCC0632-like	d2iqia1	2iqi	0.60153
c.74.1.1: AraD-like aldolase/epimerase	d1e48p_	1e48	0.59545
d.20.1.0: automated matches	d3fn1b_	3fn1	0.59135

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF01068	DNA_ligase_A_M	3.45
PF13467	RHH_4	2.76
PF13505	OMP_b-brl	2.76
PF07045	DUF1330	2.07
PF01527	HTH_Tnp_1	2.07
PF14279	HNH_5	1.38
PF01844	HNH	1.38
PF05532	CsbD	0.69
PF04392	ABC_sub_bind	0.69
PF04120	Iron_permease	0.69
PF00534	Glycos_transf_1	0.69
PF01979	Amidohydro_1	0.69
PF02910	Succ_DH_flav_C	0.69
PF06628	Catalase-rel	0.69
PF07007	LprI	0.69
PF00872	Transposase_mut	0.69
PF00239	Resolvase	0.69
PF01695	IstB_IS21	0.69
PF13175	AAA_15	0.69
PF13546	DDE_5	0.69
PF02735	Ku	0.69
PF01391	Collagen	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.45
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.45
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	2.07
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.69
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.69
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.69
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.69
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.69
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.69
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.69
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.69
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
All Organisms	root	All Organisms	35.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
cellular organisms	root	All Organisms → cellular organisms	35.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.21 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.07 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.69 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.69 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.07 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.07 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.38 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.69 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.69 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.69 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.07 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.38 %
Microvirga makkahensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga makkahensis	0.69 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.69 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.69 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.69 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.07 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	1.38 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.69 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.69 %
Nitrobacter hamburgensis X14	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	0.69 %
Mesorhizobium sp. J428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. J428	0.69 %
Microvirga makkahensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga makkahensis	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.45 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.07 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	1.38 %
Rhizobium sp. 2MFCol3.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. 2MFCol3.1	0.69 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.69 %
Nitrobacter hamburgensis X14	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	0.69 %
Mesorhizobium sp. J428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. J428	0.69 %
Microvirga makkahensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga makkahensis	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908009\|FWIRA_GRAM18401DOWJY	Not Available	515	Open in IMG/M
2170459015\|G14TP7Y01EX1OH	Not Available	604	Open in IMG/M
2170459019\|G14TP7Y01CRVTS	Not Available	610	Open in IMG/M
3300001164\|JGI11823J13286_1000408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2477	Open in IMG/M
3300001661\|JGI12053J15887_10004159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7399	Open in IMG/M
3300001661\|JGI12053J15887_10014868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4312	Open in IMG/M
3300001661\|JGI12053J15887_10073870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1885	Open in IMG/M
3300001661\|JGI12053J15887_10077223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1838	Open in IMG/M
3300001661\|JGI12053J15887_10096364	Not Available	1608	Open in IMG/M
3300001661\|JGI12053J15887_10120621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga makkahensis	1403	Open in IMG/M
3300001661\|JGI12053J15887_10133747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1316	Open in IMG/M
3300001661\|JGI12053J15887_10227700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300001661\|JGI12053J15887_10264456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	850	Open in IMG/M
3300002568\|C688J35102_118755636	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300004157\|Ga0062590_101216755	Not Available	736	Open in IMG/M
3300004798\|Ga0058859_11344142	Not Available	599	Open in IMG/M
3300005093\|Ga0062594_102331686	Not Available	583	Open in IMG/M
3300005329\|Ga0070683_100714347	Not Available	960	Open in IMG/M
3300005330\|Ga0070690_101011788	Not Available	655	Open in IMG/M
3300005331\|Ga0070670_101451058	Not Available	629	Open in IMG/M
3300005339\|Ga0070660_101650655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	546	Open in IMG/M
3300005340\|Ga0070689_101428491	Not Available	625	Open in IMG/M
3300005344\|Ga0070661_101863715	Not Available	511	Open in IMG/M
3300005364\|Ga0070673_100670896	Not Available	950	Open in IMG/M
3300005364\|Ga0070673_101561973	Not Available	623	Open in IMG/M
3300005366\|Ga0070659_101383375	Not Available	625	Open in IMG/M
3300005366\|Ga0070659_101636396	Not Available	575	Open in IMG/M
3300005455\|Ga0070663_100637370	Not Available	900	Open in IMG/M
3300005456\|Ga0070678_101526828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	626	Open in IMG/M
3300005456\|Ga0070678_101675937	Not Available	598	Open in IMG/M
3300005535\|Ga0070684_102137908	Not Available	528	Open in IMG/M
3300005547\|Ga0070693_100623959	Not Available	781	Open in IMG/M
3300005548\|Ga0070665_101835083	Not Available	613	Open in IMG/M
3300005615\|Ga0070702_100632227	Not Available	807	Open in IMG/M
3300005842\|Ga0068858_101903210	Not Available	588	Open in IMG/M
3300006755\|Ga0079222_10819238	Not Available	764	Open in IMG/M
3300009098\|Ga0105245_10554800	Not Available	1171	Open in IMG/M
3300009100\|Ga0075418_12611834	Not Available	551	Open in IMG/M
3300009101\|Ga0105247_11394468	Not Available	567	Open in IMG/M
3300009156\|Ga0111538_11667869	Not Available	803	Open in IMG/M
3300009174\|Ga0105241_12498708	Not Available	517	Open in IMG/M
3300009176\|Ga0105242_10327016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300009176\|Ga0105242_12307693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300009545\|Ga0105237_10989673	Not Available	848	Open in IMG/M
3300009840\|Ga0126313_11708824	Not Available	525	Open in IMG/M
3300010371\|Ga0134125_11840654	Not Available	658	Open in IMG/M
3300010403\|Ga0134123_12287555	Not Available	604	Open in IMG/M
3300011119\|Ga0105246_10261050	Not Available	1380	Open in IMG/M
3300011119\|Ga0105246_10607373	Not Available	946	Open in IMG/M
3300011119\|Ga0105246_11006554	Not Available	755	Open in IMG/M
3300012212\|Ga0150985_101009602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. 2MFCol3.1	613	Open in IMG/M
3300012212\|Ga0150985_107156255	Not Available	1088	Open in IMG/M
3300012212\|Ga0150985_118518490	Not Available	678	Open in IMG/M
3300012469\|Ga0150984_109355331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300012469\|Ga0150984_115663365	Not Available	1253	Open in IMG/M
3300012892\|Ga0157294_10117803	Not Available	703	Open in IMG/M
3300012905\|Ga0157296_10187344	Not Available	650	Open in IMG/M
3300012922\|Ga0137394_10861495	Not Available	757	Open in IMG/M
3300012984\|Ga0164309_10673342	Not Available	817	Open in IMG/M
3300012985\|Ga0164308_10734068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	855	Open in IMG/M
3300013296\|Ga0157374_11907908	Not Available	620	Open in IMG/M
3300013297\|Ga0157378_11794938	Not Available	661	Open in IMG/M
3300013308\|Ga0157375_12515293	Not Available	615	Open in IMG/M
3300013308\|Ga0157375_13275728	Not Available	540	Open in IMG/M
3300013308\|Ga0157375_13312831	Not Available	537	Open in IMG/M
3300014325\|Ga0163163_10251542	Not Available	1818	Open in IMG/M
3300014497\|Ga0182008_10951009	Not Available	509	Open in IMG/M
3300014969\|Ga0157376_10113561	Not Available	2388	Open in IMG/M
3300015077\|Ga0173483_10187881	Not Available	942	Open in IMG/M
3300015242\|Ga0137412_10923677	Not Available	631	Open in IMG/M
3300015371\|Ga0132258_13728213	Not Available	1039	Open in IMG/M
3300015373\|Ga0132257_102483750	Not Available	673	Open in IMG/M
3300017965\|Ga0190266_11004269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	559	Open in IMG/M
3300018027\|Ga0184605_10088013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	1360	Open in IMG/M
3300018027\|Ga0184605_10105002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1249	Open in IMG/M
3300018465\|Ga0190269_11810185	Not Available	521	Open in IMG/M
3300018466\|Ga0190268_12349157	Not Available	504	Open in IMG/M
3300018469\|Ga0190270_10005327	Not Available	6730	Open in IMG/M
3300018469\|Ga0190270_10150776	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300018469\|Ga0190270_11262188	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300018469\|Ga0190270_11752103	Not Available	676	Open in IMG/M
3300018469\|Ga0190270_12151105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	618	Open in IMG/M
3300018469\|Ga0190270_12661621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300018469\|Ga0190270_12935698	Not Available	539	Open in IMG/M
3300018476\|Ga0190274_12499319	Not Available	614	Open in IMG/M
3300018476\|Ga0190274_13586662	Not Available	524	Open in IMG/M
3300018481\|Ga0190271_13572271	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300020002\|Ga0193730_1163989	Not Available	576	Open in IMG/M
3300020005\|Ga0193697_1017170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1780	Open in IMG/M
3300021082\|Ga0210380_10311520	Not Available	717	Open in IMG/M
3300022756\|Ga0222622_10802536	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300022756\|Ga0222622_11306388	Not Available	534	Open in IMG/M
3300025900\|Ga0207710_10304828	Not Available	805	Open in IMG/M
3300025904\|Ga0207647_10795094	Not Available	509	Open in IMG/M
3300025925\|Ga0207650_10074585	Not Available	2558	Open in IMG/M
3300025927\|Ga0207687_11467825	Not Available	586	Open in IMG/M
3300025932\|Ga0207690_11269731	Not Available	615	Open in IMG/M
3300025944\|Ga0207661_11588272	Not Available	599	Open in IMG/M
3300026095\|Ga0207676_11899722	Not Available	594	Open in IMG/M
3300026121\|Ga0207683_10890037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	827	Open in IMG/M
3300027181\|Ga0208997_1002397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2156	Open in IMG/M
3300027181\|Ga0208997_1011880	Not Available	1171	Open in IMG/M
3300027181\|Ga0208997_1018694	Not Available	968	Open in IMG/M
3300027381\|Ga0208983_1031800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300027383\|Ga0209213_1002728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	2965	Open in IMG/M
3300027383\|Ga0209213_1004616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2389	Open in IMG/M
3300027388\|Ga0208995_1001872	All Organisms → cellular organisms → Bacteria	3356	Open in IMG/M
3300027388\|Ga0208995_1039202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300027388\|Ga0208995_1060321	Not Available	667	Open in IMG/M
3300027480\|Ga0208993_1010814	Not Available	1571	Open in IMG/M
3300027480\|Ga0208993_1044898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. J428	794	Open in IMG/M
3300027546\|Ga0208984_1009601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1827	Open in IMG/M
3300027546\|Ga0208984_1027682	Not Available	1172	Open in IMG/M
3300027546\|Ga0208984_1050536	Not Available	886	Open in IMG/M
3300027616\|Ga0209106_1009153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	2058	Open in IMG/M
3300027616\|Ga0209106_1028920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1221	Open in IMG/M
3300027616\|Ga0209106_1037592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1075	Open in IMG/M
3300027616\|Ga0209106_1077702	Not Available	744	Open in IMG/M
3300027633\|Ga0208988_1024571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1550	Open in IMG/M
3300027633\|Ga0208988_1034172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1309	Open in IMG/M
3300027633\|Ga0208988_1068773	Not Available	893	Open in IMG/M
3300027663\|Ga0208990_1060603	Not Available	1111	Open in IMG/M
3300027669\|Ga0208981_1035518	Not Available	1273	Open in IMG/M
3300027681\|Ga0208991_1015449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2293	Open in IMG/M
3300027681\|Ga0208991_1047951	Not Available	1290	Open in IMG/M
3300027681\|Ga0208991_1088847	Not Available	928	Open in IMG/M
3300027681\|Ga0208991_1201026	Not Available	578	Open in IMG/M
3300027738\|Ga0208989_10006054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4077	Open in IMG/M
3300027738\|Ga0208989_10055032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1373	Open in IMG/M
3300028708\|Ga0307295_10008541	All Organisms → cellular organisms → Bacteria → Proteobacteria	2396	Open in IMG/M
3300028712\|Ga0307285_10162295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	616	Open in IMG/M
3300028787\|Ga0307323_10352971	Not Available	527	Open in IMG/M
3300028790\|Ga0307283_10191733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	581	Open in IMG/M
3300028802\|Ga0307503_10436948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300028802\|Ga0307503_10617225	Not Available	600	Open in IMG/M
3300028802\|Ga0307503_10793731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300028875\|Ga0307289_10199319	Not Available	824	Open in IMG/M
3300028875\|Ga0307289_10212506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796	Open in IMG/M
3300028875\|Ga0307289_10496655	Not Available	501	Open in IMG/M
3300028876\|Ga0307286_10065818	Not Available	1244	Open in IMG/M
3300028885\|Ga0307304_10562093	Not Available	526	Open in IMG/M
3300031152\|Ga0307501_10120579	Not Available	684	Open in IMG/M
3300031547\|Ga0310887_10987601	Not Available	537	Open in IMG/M
3300033551\|Ga0247830_11670579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	510	Open in IMG/M
3300034151\|Ga0364935_0313777	Not Available	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.90%
Host-Associated	Host-Associated	31.72%
Engineered	Engineered	1.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.45%
Plants	Host-Associated → Plants	31.03%
Aquatic	Environmental → Aquatic	3.45%
Solid Waste	Engineered → Solid Waste	1.38%
Human	Host-Associated → Human	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.59%
Sediment	Environmental → Aquatic → Sediment	2.76%
Grass	Engineered → Solid Waste → Grass	1.38%
Freshwater	Environmental → Aquatic → Freshwater	0.69%
Floodplain	Environmental → Terrestrial → Floodplain	0.69%
Digestive System	Host-Associated → Human → Digestive System	0.69%
Roots	Host-Associated → Plants → Roots	0.69%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	32.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.07%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.07%
Composting	Engineered → Solid Waste → Grass → Composting	1.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.69%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	26.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.07%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.38%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.38%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.69%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.69%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.69%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	26.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.45%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.07%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.07%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.07%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.38%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.38%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.38%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.69%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.69%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300001164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_08430510	2124908009	Soil	MRPTGLASGFYEVTIDYGIFSGEWNIGRIYENRSGPKDLRWFWALHAPSKPGTLRISNQVATLEIAKAEFAASWKLWKEWAKMEELP
4PV_00515910	2170459015	Switchgrass, Maize And Mischanthus Litter	SGFYKEDVDYSVFCGEWCIGRISKKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWKQWKAWAGLEEFAPNP
4MG_00395730	2170459019	Switchgrass, Maize And Mischanthus Litter	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEAS
JGI11823J13286_10004083	3300001164	Forest Soil	MALTMRPTGLGSGTYKDDADHSVFCGEWCIGRIYENRSGPADQRWFWALHAPSRPETLRSSNQVATLETAKAEFEAGWKQWKTWAKMEEVA*
JGI12053J15887_1000415912	3300001661	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA*
JGI12053J15887_100148683	3300001661	Forest Soil	MPLKLRPTGLGHGVYKDDIDFGVFSGEAVYETRNDPEHLRWFWALHPPSRPENLRIAIQVATLEAAKAEFEASWKQWKAWAKMEEVP*
JGI12053J15887_100738702	3300001661	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKQWKAWAKMEEVP*
JGI12053J15887_100772233	3300001661	Forest Soil	MALTMRPTGLSSGIYENSIDYSVFCGEWCIGRIYENRSGSEDMRWFWALHSPSKPGTLRISNQVATLETAKAEFQASWKRWLEWAGLEEAPST*
JGI12053J15887_100963642	3300001661	Forest Soil	MPLKMRPTGLSSGIYKDSVDYSVSAAVVHGRIDETQQPRTSTQFWSLFCPSKPESLRISNQVATLEAAKAEFEASWKQWKAWAKMEETD*
JGI12053J15887_101206213	3300001661	Forest Soil	MPLTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDTRWFWALHSPSKPGTLRISNRVATLEVAKAEFE
JGI12053J15887_101337474	3300001661	Forest Soil	GHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLETAKAEFEASWKQWKAWAKMEEVSDES*
JGI12053J15887_102277002	3300001661	Forest Soil	MRPTGLSSGIYKDSVDYSVFCGEWCIGRIYETRSGPADLRWFWAFHAPSKPGTLRISNHVATLEVAKSEFEASWKQWKAWAGLEEVT*
JGI12053J15887_102644562	3300001661	Forest Soil	MVLTMRPTGLSSGFYKDSVDYCVFCGEWCIGRIYENRGGPEDQRWFWALHAPSRPETLRSSNQVATLETAKAEFEASWKQWKAWAKMEEVE*
C688J35102_1187556362	3300002568	Soil	MPLRMRPTDLGSGYYKDHTKYSIFWGEWCIGRIYETRTGPTLRWFWALHAPSEPGSMRISNHVATLDEAKAEFEASWKTVEGV
Ga0062590_1012167552	3300004157	Soil	MRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0058859_113441421	3300004798	Host-Associated	TGLGSGFYKDHEDYSVFWGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0062594_1023316861	3300005093	Soil	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0070683_1007143471	3300005329	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0070690_1010117881	3300005330	Switchgrass Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0070670_1014510581	3300005331	Switchgrass Rhizosphere	RMALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPTKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0070660_1016506551	3300005339	Corn Rhizosphere	MPLKMRPTGLGSGHYKDVPDTCGEWCIGRIYETRTGPADLRWFWALHAPGGRETLRSSNQVATLDLAKAEFEA
Ga0070689_1014284911	3300005340	Switchgrass Rhizosphere	MPLAMRPTGLGHGAYKDKVDYGIFCGEWCIGRIYETRTGPDELRWFWALHAPSKPGTMRTSNRVASLEVAKAEFEAAWKQWKAWAEMEELPLRESAARRF
Ga0070661_1018637151	3300005344	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLTLVLVAVLSQQTENLSISNQVATLEAA
Ga0070673_1006708963	3300005364	Switchgrass Rhizosphere	LSSGFYKDSVDYRIFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0070673_1015619732	3300005364	Switchgrass Rhizosphere	MPLKLRPTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGYPWFWALHAPSKPGTMRTSNQAVTLEAAKAEFEASWKQWKTWAGMEEAE*
Ga0070659_1013833752	3300005366	Corn Rhizosphere	MPLAMRPTGLGHGAYKDKVDYGIFCGEWCIGRIYETRTGPDELRWFWALHAPSKPGTMRTSNRVASLEVAKAEFEAAWKQWKAWAEMEELPLRESAARRF*
Ga0070659_1016363961	3300005366	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPTKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0070663_1006373703	3300005455	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEAS*
Ga0070678_1015268283	3300005456	Miscanthus Rhizosphere	MPLTMRPTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGHPWFWALHAPSKPGTMRTSNQAVTLEAAKAEFEASWKQWKAWA
Ga0070678_1016759371	3300005456	Miscanthus Rhizosphere	MRSSSLGSGYYKDVPDYGIYCGEWCIGRIYKPRTSPAGESWFWALHVPTKPRGLRTDNHTETLDEAKAEFEASWKQWKAWAGMEEAGTNPQSTS*
Ga0070684_1021379081	3300005535	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0070693_1006239591	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MPLAMRPTGLGHGAYKDKVDYGIFCGEWCIGRIYETRTGPDELRWFWALHAPSKPGTMRTSNRVASLEVAKAEFEAAW
Ga0070665_1018350831	3300005548	Switchgrass Rhizosphere	MPLKMRSSSLGSGYYKDVPDYGIYCGEWCIGRIYKPRTSPAGESWFWALHVPTKPRGLRTDNHTETLDEAKAEFEASWKQWKAWAGMEEAGT
Ga0070702_1006322272	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPLKMHRSVVSYSGYYKETVNYSVFCGERYIGYIYENGRAPEGLRWFWALHAPGKRGTMRTSNQVATLDEAKAEVEVSWKQWKAWTGM
Ga0068858_1019032102	3300005842	Switchgrass Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEAS*
Ga0079222_108192383	3300006755	Agricultural Soil	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAW
Ga0105245_105548001	3300009098	Miscanthus Rhizosphere	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEAS*
Ga0075418_126118342	3300009100	Populus Rhizosphere	MPFKLRPGLGHGVYKDVPDYSVFCGEWCIGRIYETRSGPDSLRWFWALHALSKPGTMRISNQVATLDEAKAEFEASWKQWKAWAGMEEVS*
Ga0105247_113944681	3300009101	Switchgrass Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWNQWKAWAKLEEVP*
Ga0111538_116678693	3300009156	Populus Rhizosphere	MPLKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP*
Ga0105241_124987081	3300009174	Corn Rhizosphere	GSGYYKDVPDYGIYCGEWCIGRIYKPRTSPAGESWFWALHVPTKPRGLRTDNHTETLDEAKAEFEASWKQWKAWAGMEEAGTNPQSTS*
Ga0105242_103270161	3300009176	Miscanthus Rhizosphere	TGCSGLVAMPLKMRPTGLGHGGYKDVPDYSIFCGEWCIGRIYETRTGPKELRWFWALHAPGGRETLRSSNHAATLDIAKAEFEASWKQWKAWAGMEQSNK*
Ga0105242_123076931	3300009176	Miscanthus Rhizosphere	MALKMRPSRLGHGVYKDIPDYSIFCGEWCIGRIYETRTGPADLRWFWALHAPGGRETLRSSNQVATLDLAKAEFEASWKQWKEWAGMEEVHLDTQARRA*
Ga0105237_109896733	3300009545	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPENLRISNQVATLEAAKAEFESSWKQWKAW
Ga0126313_117088242	3300009840	Serpentine Soil	LEMTLKMSPTGLGHGVYKDVPDYGIYCGEWCIGRIIETRTGPEGLRWFWALHAPSQLGEMRTSNHVATLDEAKAEFEATWKQWKAWAGMEEVS*
Ga0134125_118406542	3300010371	Terrestrial Soil	MPLKMRPTGLGHGVYKDNIDYGVFCGEWCIGRIYETRTGPAALRWFWALHFPTKPPGLRTDNRVATLDEANPEFEASWKQMEGVGRCGGGVI
Ga0134123_122875551	3300010403	Terrestrial Soil	MALKMCPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0105246_102610503	3300011119	Miscanthus Rhizosphere	MPLKMHRSVVSYSGYYKETVNYSVFCGERYIGYIYENGRAPEGLRWFWALHAPGKRGTMRTSNQVATLDEAKAEFEVSWKQWKAWTGMEEAE*
Ga0105246_106073732	3300011119	Miscanthus Rhizosphere	MALKMRPTGLDHGVYKDVPDYSIRCGEWCIGRIYETRTGPADLRWFWALHAPSKPGSMRTSNQVATLDQAKAEFEASWKQRKPWAGLEQME*
Ga0105246_110065541	3300011119	Miscanthus Rhizosphere	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEESTPKP*
Ga0150985_1010096021	3300012212	Avena Fatua Rhizosphere	MPLKMRPTGLGHGVYKDNVDYSIFCGEWCIGRIYKTRTGPEQMRWFWALHFPSRPENLRTDNRAGSLEAAKKEFEECWRKWKAWAKL
Ga0150985_1071562552	3300012212	Avena Fatua Rhizosphere	LEMTLKMSPTGLGHGVYKDVPDYGIYCGEWCIGRIIETRTGPEGLPWFWALHAPSQLGEMRTSNHVATLDEAKAEFEATWKQWKAWAGMEEVS*
Ga0150985_1185184901	3300012212	Avena Fatua Rhizosphere	MSLKMRPTGLGHGVYKDVLDYSIFCGEWCIGRIYETRTGPTDLRWFWALHAPGGRETLRSSNHAATLDEAKAEFEASWKQWKEWAGMEEIS*
Ga0150984_1093553312	3300012469	Avena Fatua Rhizosphere	MPLTMRPTGLGHGVCKDLPDYGVYCGKLCIGRIYETRTGPEELRWFWAFHAPSKPGTMRTSNQVATLDEAKAEFEASWKLWKAWAGLEERNSKTLGQGLNPNRGSKSGV*
Ga0150984_1156633652	3300012469	Avena Fatua Rhizosphere	MTLKMSPTGLGHGVYKDVPDYGIYCGEWCIGRIIETRTGPEGLPWFWALHAPSQLGEMRTSNHVATLDEAKAEFEATWKQWKAWAGMEEVS*
Ga0157294_101178031	3300012892	Soil	MPLKMRPTGLSSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEAS*
Ga0157296_101873441	3300012905	Soil	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWKQWKAWAKAGRSPLGNLRSNA*
Ga0137394_108614951	3300012922	Vadose Zone Soil	AMALTMRPTGLGHGAYKDDIDYSVFSGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLGEV*
Ga0164309_106733421	3300012984	Soil	VPDYGVFSGEWCIGRIYETRTGPADLRWFWALHAPSKPGTMRTSNQVATLEQAKAEFEASWKQWKAWAKLEEVDLGCRSARPA*
Ga0164308_107340682	3300012985	Soil	MPLKMRPTGLGHGVYKDVPDYGVFCGKWCIGRIYETRTGPDSLRWFWALHAPSRPGTMRTDNRSATLDEAKAEFEASWKQWKAWAGMDRFT*
Ga0157374_119079082	3300013296	Miscanthus Rhizosphere	MPLKMRSSSLGSGYYKDVPDYGIYCGEWCIGRIYKPRTSPAGESWFWALHVPTKPRGLRTDNHTETLDEAKAEFE*
Ga0157378_117949382	3300013297	Miscanthus Rhizosphere	MTTMDDIRPTGLGHGVYKDTVDYGVFCGGWCIGRIYETRTGPADLRWFWALHAPSKPGSMRFSNQVAALETAKAEFEASWKQKG
Ga0157375_125152931	3300013308	Miscanthus Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLELAKAEFESSWKQWKAWAKLEEVP*
Ga0157375_132757281	3300013308	Miscanthus Rhizosphere	MPLKMRSSSLGSGYYKDAPDYGIYCGEWCIGRIYKPRTSPAGKSWFWALHVPAKPRGLRTDNHTETLDEAKAEFE
Ga0157375_133128311	3300013308	Miscanthus Rhizosphere	TMRPTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGYPWFWALHAPSKPGTMRTSNQAVTLEAAKAEFEASWKQWKAWAGMEEV*
Ga0163163_102515421	3300014325	Switchgrass Rhizosphere	YKDKVDYGIFCGEWCIGRIYETRTGPDELRWFWALHAPSKPGTMRTSNRVASLEVAKAEFEAAWKQWKAWAEMEELPLRESAARRF*
Ga0182008_109510091	3300014497	Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPSKPESLRISNQVATLEIAKAEFEASWKQWKAWAKLEEVP*
Ga0157376_101135613	3300014969	Miscanthus Rhizosphere	MPLAMRPTGLGHGAYKDKVDYGIFCGEWCIGRIYETRTGPEELRWFWALHAPSKPGTMRTSNRVASLEVAKAEFEAAWKQWKAWAEMEELPLRESAARRF*
Ga0173483_101878813	3300015077	Soil	MPLKMRPTGLGSGFYKDDVDYSVFCGKWCIGRIYEKHSSPEHLRWFWSLFCPSKPETLRISNQVASLEIAKAEF
Ga0137412_109236772	3300015242	Vadose Zone Soil	LGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLGEV*
Ga0132258_137282132	3300015371	Arabidopsis Rhizosphere	MPLKMRSSSLGSGYYKDVPDYGIYCGEWCIGRIYKPRTSPAGESWFWALHVPTKPRGLRTDNHTETLDEAKAEFEASWKQWKAWAGMEEAGTNPQSKS*
Ga0132257_1024837501	3300015373	Arabidopsis Rhizosphere	MALKMHPTGLSSGFHKDSVDYSIFCGEWCIGRIYETRTGPDSLRWFWALHAPSKPGSMRTSNQVATLDEAKAEFEASWKQWKT
Ga0190266_110042692	3300017965	Soil	MVLTMRPTGLGSGFYKDNADYGIYCGEWCIGRIYETRTGPKEPRWFWALHAPSKPGSMRISNQVALNEAKAEFEAS
Ga0184605_100880132	3300018027	Groundwater Sediment	MPLSIRPTGLASGFYKDNVDYGVFCGEWCIGRIYETRTGPESMRWFWALHAPSKPEGLRISNQAATLEVAKQEFEASWVAWKAWARMEEVA
Ga0184605_101050023	3300018027	Groundwater Sediment	MALTMRPTGLGHGVYADAIDYNVFSGEWCIGRIYEQRTGPKGLRWFWALHAPGGRETLRASNRVATLEVAKAEFEESWKQWKAWRRWKRRPSARYRTDKSVESS
Ga0190269_118101851	3300018465	Soil	MALKMRPTGLGHGVYKDVPDYGVFCGEWCIGRICQTRTGRESLRWFWALHAPSKPGAMRTSNQVATLDEAKAEFEASWKQWKAWAGMEEVRENHLPGSTASGPTGESQPTR
Ga0190268_123491571	3300018466	Soil	LKAVLGLASTGYYKDHADYLIFCGGWNIGRIYEIRSGPEELRWFWALHFPGRPENLRTDNRAGSLEAAKEEFEECWRKWKAWAKLEEVT
Ga0190270_1000532711	3300018469	Soil	MPLKMRPAGLGHGVYKDVPDYSIFCGEWCIGRIYETRTGPADLLWFWALHAPSRRETLRSSNHAATLEIAKAEFEASWKQWKAWAGMEEVEKAASVKQM
Ga0190270_101507762	3300018469	Soil	MVLTMRPTGLGHGVYKDIPDYGIYCGEWCIGRIYETRTGPKEPRWFWALHAPSKPGSMRISNQVALNEAKAEFEASWK
Ga0190270_112621882	3300018469	Soil	MPLKMRPTGLGHGVYKDVPDYGVFCGEWCIGRIYETRTGPAELRWFWALHAPSKPGTLRTDSRAASLEQAKAEFEASWKQWKAWAGMEETH
Ga0190270_117521031	3300018469	Soil	MALKMRPTGVGHGVYNDNADYGVFCGEWCIGRIYQMRTGPESLRWFWALHAPSKPGEMRTSNQVATLEVAKTEFEASWKQWKAWAARIVGHVTRAQ
Ga0190270_121511052	3300018469	Soil	MPLTMRPTGLGHGVYQDVPDYSIFCGEWCVGRMYETRTGPESLRWFWALHFPTKPPGLRTDNRAATIDQAKAEFEASWKKWKAWAGLEELS
Ga0190270_126616211	3300018469	Soil	MPLTMRPTGLGHGVYKDVPDYSIFCGEWCIGRIYETRTGPESLRWFWALHAPSKPGSMRTSNQVATLDEAKAEFEASWKQWKAWAGMERFT
Ga0190270_129356981	3300018469	Soil	KDTVDYGVFCGEWCIGRIYETRTGPADLRWFWALHAPGGRETLRASNRVATLDQAKAEFEASWKRWKAWAGMEEAG
Ga0190274_124993191	3300018476	Soil	MTLTMRPTGLGHGVYKDSVDYSILCGEWCIGRIYATRTGPADLRWFWALHAPGGRETLRSSNHAATLDEAKAEFEASWKQWKAWAEMEEIP
Ga0190274_135866621	3300018476	Soil	MPLKLRPTGLGHGFYKDTVDYGVFCGEWCIGRIYQTRTGPESLRWFWALHTPSKPGEMRTSNQVATLDEAKAEFEASWKRWK
Ga0190271_135722711	3300018481	Soil	MPLKMRPTGLGHGVYKDVPDYGIYCGEWCIGRIYETRTGPAELRWFWALHAPSKPGTLRTDSRAATLEQAKAEFEASWQQWKAWAGM
Ga0193730_11639893	3300020002	Soil	MALTMRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWKAWAK
Ga0193697_10171703	3300020005	Soil	MTLKMRPTGLGHGVLDYSIFCGEWCIGRIYQTRTGPESLRWFWALHAPSKPGEMRTSNQVATLDEAKAEFEASWKQWKAWAKLEEVP
Ga0210380_103115202	3300021082	Groundwater Sediment	MPLKVRPTGLGHGVYKDNVDYSVFCGEWCIGRIYETRTGPEQMRWFWALHFPSRPENLRTDNRAGSLEAAKKEFEECWRKWKAWAKLEEVP
Ga0222622_108025361	3300022756	Groundwater Sediment	MTLKMRPTGLGHGVYKDNVDYSVFCGEWCIGRIYETRTGPEHLRWFWALPFPGRPENLRTDNRAGSLEAAKEEFEACWRKWKAWAKLEEVA
Ga0222622_113063881	3300022756	Groundwater Sediment	PVRRPWWRSSRGSNQMALKMRPTGLGHGVYKDVPDFSIYCGEWCIGRIYEARTGPKSLRWLWALHAPSKPGSMRISNQVATLDEAKAEFEASWKQWKVWAGLEDTFCRSATGQTEGRRNQPTRP
Ga0207710_103048282	3300025900	Switchgrass Rhizosphere	MPLKLRSTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGYPWFWALHAPGKPGTMRTSNQAVTLEAAKAEFEASWKQWKAWAGLEEFEPNP
Ga0207647_107950942	3300025904	Corn Rhizosphere	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYQPRTGPAGYPWFWALHAPGKPGTMRTSNQAVTLEAAKAEFEASWKQWKTWAG
Ga0207650_100745853	3300025925	Switchgrass Rhizosphere	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP
Ga0207687_114678253	3300025927	Miscanthus Rhizosphere	MALKMRPTGLGSGFYKGDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEA
Ga0207690_112697311	3300025932	Corn Rhizosphere	GLGSGFYKDDVDYSVFCGEWCIGRIYEKRSSPEHLRWFWSLFCPTKPESLRISNQVATLEIAKAEFEASWNQWKAWAGLEEIT
Ga0207661_115882721	3300025944	Corn Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRISNQVASLDVAKAEFEASWKQWKAWAGLEEFEPNP
Ga0207676_118997222	3300026095	Switchgrass Rhizosphere	MALKMRPTGLGSGFYKDDVDYSVFCGEWCIGRIYEKHSSPEHLRWFWSLFCPSKPESLRTSNQVATLEIAKAEFEASWKQWKAWAKLEEMP
Ga0207683_108900372	3300026121	Miscanthus Rhizosphere	MPLTMRPTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGHPWFWALHAPSKPGTMRTSNQAVTLEAAKAEFEASWKQWKVWAGMERLTDVSTDRCRDCSETLRY
Ga0208997_10023973	3300027181	Forest Soil	MALTMRPTGLGSGTYKDDADHSVFCGEWCIGRIYENRSGPADQRWFWALHAPSRPETLRSSNQVATLETAKAEFEAGWKQWKTWAKMEEVA
Ga0208997_10118803	3300027181	Forest Soil	LKLRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSKPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0208997_10186941	3300027181	Forest Soil	VAPSGTGPAAVMALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKQWKAWAKMEEVP
Ga0208983_10318002	3300027381	Forest Soil	MALTMRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLGEL
Ga0209213_10027282	3300027383	Forest Soil	MALTMRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLAEV
Ga0209213_10046163	3300027383	Forest Soil	MALTMRPTGLGSGTYKDDADHSVFCGEWCIGRIYENRSGPADQRWFWALHAPSRPETLRSSNQVATLETAKAEFEAGWKQWKTW
Ga0208995_10018726	3300027388	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKRWLEWAKLGE
Ga0208995_10392021	3300027388	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYEKRRGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKRWLEWVGLEEAAST
Ga0208995_10603211	3300027388	Forest Soil	RPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0208993_10108142	3300027480	Forest Soil	LRGISRMSHCNIFPCLPLAWADYWALKLRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLETAKAEFEASWKQWKAWAKMEEVSDES
Ga0208993_10448981	3300027480	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHAPSKPGTLRISNQAATLEVAKAEFEASWKQWLAWAKLGGGVAGNGPFDRRPTD
Ga0208984_10096012	3300027546	Forest Soil	MSHCNIFPCLPLAWADYWALKLRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0208984_10276821	3300027546	Forest Soil	HSRMSHCNIFPCLPLAWADYWALKLRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLGEL
Ga0208984_10505361	3300027546	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLETAKAEFEASWKQWKAWAKMEEVSDES
Ga0209106_10091532	3300027616	Forest Soil	MALTMRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLVEV
Ga0209106_10289203	3300027616	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKQWKAWAKMEEVP
Ga0209106_10375921	3300027616	Forest Soil	SEIRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0209106_10777022	3300027616	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSKPGTLRNSNQVATLETAKAEFEASWKQWKAWAKMEEVSDES
Ga0208988_10245711	3300027633	Forest Soil	MALTMRPTGLGSGTYKDDADHSVFCGEWCIGRIYENRSGPADQRWFWALRRPETLRSSNQVATLEAAKAEFEASWKQW
Ga0208988_10341722	3300027633	Forest Soil	MSHCNIFPCLPLAWADYWALKLRPTGLGHGVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLETAKAEFEASWKQWKAWAKMEEVSDES
Ga0208988_10687732	3300027633	Forest Soil	MRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEVSWKQWIAWAKLAEV
Ga0208990_10606031	3300027663	Forest Soil	VMALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKRWLEWAKLGEEK
Ga0208981_10355181	3300027669	Forest Soil	DSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSRPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0208991_10154493	3300027681	Forest Soil	MRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEASWKQWLAWAKLGEL
Ga0208991_10479513	3300027681	Forest Soil	MALTMRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKRWLEWAKLGEEK
Ga0208991_10888473	3300027681	Forest Soil	GVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHAPSKPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEV
Ga0208991_12010263	3300027681	Forest Soil	GVYKDSIDYGVFSGEWCIGRIYENRSGPEDQRWFWALHAPSKPETLRNSNQVATLEAAKAEFEASWKQWKAWAKMEEVA
Ga0208989_100060542	3300027738	Forest Soil	MRPTGLGHGVYKDSIDYGVFSGDWCIGRIYENRSGPEDQRWFWALHPPSRPENLRIANQVATLEAAKAEFEASWKRWLEWAKLGEEK
Ga0208989_100550321	3300027738	Forest Soil	MALTMRPTGLGHGVYKDDIDYSVFCGEWCIGRIYENRSGPEDMRWFWALHSPSKPGTLRISNRVATLEVAKAEFEVSWKQWIAWAKLAEV
Ga0307295_100085413	3300028708	Soil	MALKMRPTGLGHGVYKDVPDFSIYCGEWCIGRIYEARTGPKSLRWFWALHAPSKPGSMRISNQVATLDEAKAEFEASWKQWKVWAGLEDTFCRSATGQTEGRRNQPTRP
Ga0307285_101622951	3300028712	Soil	MALKMRPTGLGHGVYKDVPDYGIFCGEWCIGRIYQRRTGPESLRWFWALHAPSKPGAMRTSNQVATLEVAKAEFEASWKRWKSWAKLEEVP
Ga0307323_103529711	3300028787	Soil	VSLGGIDYGVFSGEWCIGRIYENRSGPKELRWFWALHAPGGRETLRSSNQVATLEVAKAEFEASWKQWKAWAKMEEV
Ga0307283_101917331	3300028790	Soil	MPLKMRPTGLGHGVYKDDIDFSAFCGEWCIGRIYQTRTGPESLRWFWALHAPSKSGEMRTSNQVATLEAAKAQFGASRRQWKAWAGVRTKS
Ga0307503_104369482	3300028802	Soil	MPLKLRPTGLGHGVYKDVPNYSVFCGEWCIGRIYETRTGPADLRWFWALHLPNKPPGLRTDNRAATLGETKAEFEASWKQWKAWAGMEEIA
Ga0307503_106172251	3300028802	Soil	MPSAAPGGGSAAVIAMVLTMRPTGLGHGVYKDIPDYGIYCGEWCIGRIYETRTGPKEPRWFWALHAPSKPGSMRISNQVALNEAKAEFEASWK
Ga0307503_107937311	3300028802	Soil	HGTFESAMPLKMRPTGLGSGFYKDNVDYGIYCGEWCIGRIYENRTGPKELRWFWALHAPSKPGSMRTSNQVATLDEAKAEFEASWKQWKAWAGMEEVHLNTQTRRA
Ga0307289_101993191	3300028875	Soil	YKDNVDYSIFCGEWCIGRIYKTRTGPESLRWFWALHFPGRPENLRTDNRAGSLEAAKEEFEECWRKWKAWAKLEKVFSGRVRRLPNPRRG
Ga0307289_102125061	3300028875	Soil	MPLTMRGLASTGYYKDHADYLIFCGGWNIGRIYEIHSGPEELRWFWALHFPGRPENLRTDNRAGSLEAAKEEFEECWRKWKAWAKLEEVA
Ga0307289_104966552	3300028875	Soil	PWPRRYKDVPDYGVFCGEWCIGRIYETRTGPESLRWFWALHVPSKPGTLRTDNRTATLDEAKAEFEARKQWKAWAGMEEAS
Ga0307286_100658181	3300028876	Soil	GVYKDVPDFSIYCGEWCIGRIYEARTGPKSLRWFWALHAPSKPGSMRISNQVATLDEAKAEFEASWKQWKVWAGLEDTFCRSATGQTEGRRNQPTRP
Ga0307304_105620931	3300028885	Soil	MALKMRPTGLGHGVYKDVPDFSIYCGEWCIGRIYEARTGPKSLRWLWALHAPSKPGSMRISNQVATLDEAKAEFEASWKQWKVWAGLEDTFCRSATGQTEGRRNQPTRP
Ga0307501_101205792	3300031152	Soil	MPLKMRPTGLGHGVYKNNVDYSVFCGEWCIGRIYKTRTGPQHLRWFWALHFPSRPENLRTDNRAGSLEAAKEEFEECWRKWKAWAKLEEVS
Ga0310887_109876011	3300031547	Soil	MPLKLRSTGLGHGVYKDIPDYGVFCGEWCIGRIYQPRTGPAGHPWFWALHAPGKPGTMRTSNQVATLEIAKAEFEASWKQWKAWAGMEEAPNPPRSAG
Ga0247830_116705791	3300033551	Soil	MPLKMRPAGLGHGVYKDNVDYSVFCGDWCIGRIYETRTGPESLRWFWALYAPSKPGTLRTANQVATLDQAKAEFEASWKQWKAWAGMEEVP
Ga0364935_0313777_199_474	3300034151	Sediment	MPLKLRPTGLGHGVYKDNVDYGVFCGEWCIGRIYETRTGPAELRWFWALHLLGKPSRLRTDSRAATLDQAKAEFEASWKQWKAWAGMEEVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050291

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences