NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F050530

Metagenome / Metatranscriptome Family F050530

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F050530
Family Type Metagenome / Metatranscriptome
Number of Sequences 145
Average Sequence Length 41 residues
Representative Sequence LAGRAAQLQGWKLLVATSIAAGLGLVMILLKDLVLIHLH
Number of Associated Samples 117
Number of Associated Scaffolds 145

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.69 %
% of genes near scaffold ends (potentially truncated) 94.48 %
% of genes from short scaffolds (< 2000 bps) 95.17 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (71.724 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(35.172 % of family members)
Environment Ontology (ENVO) Unclassified
(37.241 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.655 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 55.22%    β-sheet: 0.00%    Coil/Unstructured: 44.78%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 145 Family Scaffolds
PF07690MFS_1 5.52
PF06736TMEM175 2.76
PF07411DUF1508 2.07
PF13302Acetyltransf_3 2.07
PF13520AA_permease_2 2.07
PF07366SnoaL 2.07
PF08281Sigma70_r4_2 1.38
PF00903Glyoxalase 1.38
PF13546DDE_5 1.38
PF03631Virul_fac_BrkB 1.38
PF00753Lactamase_B 1.38
PF02738MoCoBD_1 1.38
PF01906YbjQ_1 1.38
PF13401AAA_22 0.69
PF13581HATPase_c_2 0.69
PF00589Phage_integrase 0.69
PF00528BPD_transp_1 0.69
PF00144Beta-lactamase 0.69
PF04525LOR 0.69
PF13460NAD_binding_10 0.69
PF13808DDE_Tnp_1_assoc 0.69
PF11964SpoIIAA-like 0.69
PF02113Peptidase_S13 0.69
PF01022HTH_5 0.69
PF13508Acetyltransf_7 0.69
PF13683rve_3 0.69
PF12840HTH_20 0.69
PF09851SHOCT 0.69
PF06386GvpL_GvpF 0.69
PF08240ADH_N 0.69
PF01568Molydop_binding 0.69
PF01544CorA 0.69
PF10009DUF2252 0.69
PF00132Hexapep 0.69
PF04185Phosphoesterase 0.69
PF01814Hemerythrin 0.69
PF03976PPK2 0.69
PF02604PhdYeFM_antitox 0.69
PF04851ResIII 0.69
PF13379NMT1_2 0.69
PF00583Acetyltransf_1 0.69
PF12680SnoaL_2 0.69
PF11918Peptidase_S41_N 0.69
PF13482RNase_H_2 0.69
PF00392GntR 0.69
PF01980TrmO 0.69
PF03793PASTA 0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 145 Family Scaffolds
COG3548Uncharacterized membrane proteinFunction unknown [S] 2.76
COG3422Uncharacterized conserved protein YegP, UPF0339 familyFunction unknown [S] 2.07
COG0393Uncharacterized pentameric protein YbjQ, UPF0145 familyFunction unknown [S] 1.38
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 1.38
COG0598Mg2+ and Co2+ transporter CorAInorganic ion transport and metabolism [P] 0.69
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.69
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.69
COG1720tRNA (Thr-GGU) A37 N6-methylaseTranslation, ribosomal structure and biogenesis [J] 0.69
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.69
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 0.69
COG2326Polyphosphate kinase 2, PPK2 familyEnergy production and conversion [C] 0.69
COG2367Beta-lactamase class ADefense mechanisms [V] 0.69
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.69
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 0.69
COG4894Putative phospholipid scramblase YxjI, Tubby2 superfamilyLipid transport and metabolism [I] 0.69


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms72.41 %
UnclassifiedrootN/A27.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_109606640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales799Open in IMG/M
3300002245|JGIcombinedJ26739_101230961All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300004091|Ga0062387_101629211Not Available522Open in IMG/M
3300004152|Ga0062386_100270905All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1349Open in IMG/M
3300004555|Ga0068922_1155316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia541Open in IMG/M
3300004633|Ga0066395_10800398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. 744566Open in IMG/M
3300005172|Ga0066683_10914046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia502Open in IMG/M
3300005445|Ga0070708_100818126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales875Open in IMG/M
3300005533|Ga0070734_10829216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii525Open in IMG/M
3300005764|Ga0066903_101015463All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1518Open in IMG/M
3300005764|Ga0066903_101929772All Organisms → cellular organisms → Bacteria1132Open in IMG/M
3300005764|Ga0066903_103200498Not Available885Open in IMG/M
3300005921|Ga0070766_10468287All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia834Open in IMG/M
3300005993|Ga0080027_10414461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia543Open in IMG/M
3300006028|Ga0070717_10375442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1274Open in IMG/M
3300006050|Ga0075028_100635636All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria637Open in IMG/M
3300006162|Ga0075030_101192066All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia598Open in IMG/M
3300006175|Ga0070712_101329322Not Available627Open in IMG/M
3300006804|Ga0079221_11608214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia526Open in IMG/M
3300007076|Ga0075435_100201505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1686Open in IMG/M
3300009162|Ga0075423_11508749Not Available721Open in IMG/M
3300009672|Ga0116215_1340297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia651Open in IMG/M
3300009839|Ga0116223_10775353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116549Open in IMG/M
3300010043|Ga0126380_11414433Not Available611Open in IMG/M
3300010046|Ga0126384_10786677Not Available850Open in IMG/M
3300010159|Ga0099796_10012485All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD00822401Open in IMG/M
3300010343|Ga0074044_11080148Not Available526Open in IMG/M
3300010358|Ga0126370_11314496Not Available678Open in IMG/M
3300010361|Ga0126378_11854279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria686Open in IMG/M
3300010361|Ga0126378_12388058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia604Open in IMG/M
3300010362|Ga0126377_10276750All Organisms → cellular organisms → Bacteria1645Open in IMG/M
3300010362|Ga0126377_11268965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter808Open in IMG/M
3300010376|Ga0126381_102161492Not Available801Open in IMG/M
3300010379|Ga0136449_102363156All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300010937|Ga0137776_1828250Not Available731Open in IMG/M
3300011120|Ga0150983_16000201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1020Open in IMG/M
3300012285|Ga0137370_10054781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae2150Open in IMG/M
3300012285|Ga0137370_10390201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia842Open in IMG/M
3300012922|Ga0137394_10502170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1030Open in IMG/M
3300012957|Ga0164303_10334627Not Available908Open in IMG/M
3300013104|Ga0157370_12121772Not Available503Open in IMG/M
3300013307|Ga0157372_12729282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria567Open in IMG/M
3300015372|Ga0132256_103165784Not Available553Open in IMG/M
3300015373|Ga0132257_104605854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria502Open in IMG/M
3300015374|Ga0132255_104734461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria576Open in IMG/M
3300016341|Ga0182035_10616665Not Available939Open in IMG/M
3300016341|Ga0182035_11307293All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria649Open in IMG/M
3300016341|Ga0182035_12113169All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300016445|Ga0182038_10879956All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → unclassified Ktedonobacteraceae → Ktedonobacteraceae bacterium789Open in IMG/M
3300017959|Ga0187779_10251491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1119Open in IMG/M
3300017973|Ga0187780_10695957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae733Open in IMG/M
3300017974|Ga0187777_10879198Not Available643Open in IMG/M
3300018007|Ga0187805_10055468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1780Open in IMG/M
3300018044|Ga0187890_10881561All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria504Open in IMG/M
3300018058|Ga0187766_10361022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria953Open in IMG/M
3300021181|Ga0210388_11352645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria599Open in IMG/M
3300021362|Ga0213882_10086136Not Available1265Open in IMG/M
3300021403|Ga0210397_10247638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1292Open in IMG/M
3300021404|Ga0210389_10843824Not Available715Open in IMG/M
3300021405|Ga0210387_10034787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3991Open in IMG/M
3300021420|Ga0210394_11134129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria673Open in IMG/M
3300021474|Ga0210390_10562539All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126958Open in IMG/M
3300021474|Ga0210390_10568498Not Available952Open in IMG/M
3300021474|Ga0210390_11601536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae513Open in IMG/M
3300021478|Ga0210402_11166538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria697Open in IMG/M
3300021559|Ga0210409_10793688All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria819Open in IMG/M
3300025898|Ga0207692_10285899All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus999Open in IMG/M
3300025911|Ga0207654_11165093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria562Open in IMG/M
3300025924|Ga0207694_10918551All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria740Open in IMG/M
3300027568|Ga0208042_1123939All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126651Open in IMG/M
3300027604|Ga0208324_1169497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Prauserella → Prauserella marina589Open in IMG/M
3300027680|Ga0207826_1081689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria890Open in IMG/M
3300027737|Ga0209038_10078092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia995Open in IMG/M
3300027765|Ga0209073_10054996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD00821316Open in IMG/M
3300027787|Ga0209074_10220193All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria723Open in IMG/M
3300027895|Ga0209624_10426361All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300027910|Ga0209583_10093630All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1145Open in IMG/M
3300028015|Ga0265353_1014461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii738Open in IMG/M
3300028775|Ga0302231_10336820Not Available634Open in IMG/M
3300030524|Ga0311357_10743455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia886Open in IMG/M
3300030618|Ga0311354_11700147Not Available551Open in IMG/M
3300030707|Ga0310038_10013526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales5308Open in IMG/M
3300031170|Ga0307498_10154176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria765Open in IMG/M
3300031545|Ga0318541_10771810Not Available536Open in IMG/M
3300031564|Ga0318573_10115105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium1391Open in IMG/M
3300031564|Ga0318573_10288198All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium878Open in IMG/M
3300031573|Ga0310915_10099055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1967Open in IMG/M
3300031640|Ga0318555_10440991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria706Open in IMG/M
3300031640|Ga0318555_10477056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium676Open in IMG/M
3300031679|Ga0318561_10121089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1390Open in IMG/M
3300031679|Ga0318561_10207749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1063Open in IMG/M
3300031679|Ga0318561_10832005Not Available507Open in IMG/M
3300031681|Ga0318572_10774859All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300031682|Ga0318560_10489825Not Available666Open in IMG/M
3300031708|Ga0310686_101854217Not Available903Open in IMG/M
3300031713|Ga0318496_10557432Not Available633Open in IMG/M
3300031723|Ga0318493_10312401Not Available850Open in IMG/M
3300031736|Ga0318501_10419635All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium724Open in IMG/M
3300031736|Ga0318501_10449992Not Available699Open in IMG/M
3300031740|Ga0307468_101465524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria631Open in IMG/M
3300031748|Ga0318492_10344775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria779Open in IMG/M
3300031763|Ga0318537_10267274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria634Open in IMG/M
3300031763|Ga0318537_10323542Not Available570Open in IMG/M
3300031764|Ga0318535_10080031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1410Open in IMG/M
3300031764|Ga0318535_10109207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium1216Open in IMG/M
3300031799|Ga0318565_10170406Not Available1057Open in IMG/M
3300031805|Ga0318497_10091241All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1625Open in IMG/M
3300031805|Ga0318497_10561585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria640Open in IMG/M
3300031823|Ga0307478_10713412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia840Open in IMG/M
3300031833|Ga0310917_10469933All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium856Open in IMG/M
3300031835|Ga0318517_10161876All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1003Open in IMG/M
3300031845|Ga0318511_10239467Not Available813Open in IMG/M
3300031879|Ga0306919_10515374All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia922Open in IMG/M
3300031879|Ga0306919_10843689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium703Open in IMG/M
3300031880|Ga0318544_10148807Not Available897Open in IMG/M
3300031896|Ga0318551_10807601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis545Open in IMG/M
3300031897|Ga0318520_10469336Not Available775Open in IMG/M
3300031910|Ga0306923_10879494All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria983Open in IMG/M
3300031910|Ga0306923_10885218Not Available979Open in IMG/M
3300031910|Ga0306923_11957855All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300031945|Ga0310913_10633043All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium758Open in IMG/M
3300031954|Ga0306926_10177655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2641Open in IMG/M
3300031954|Ga0306926_10718479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1210Open in IMG/M
3300032001|Ga0306922_11312878Not Available731Open in IMG/M
3300032008|Ga0318562_10141476All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1382Open in IMG/M
3300032008|Ga0318562_10786443Not Available545Open in IMG/M
3300032009|Ga0318563_10108204Not Available1474Open in IMG/M
3300032010|Ga0318569_10159179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → unclassified Acidithrix → Acidithrix sp. C251041Open in IMG/M
3300032042|Ga0318545_10121032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria923Open in IMG/M
3300032052|Ga0318506_10254240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. ATCC 39116778Open in IMG/M
3300032067|Ga0318524_10509276All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → unclassified Acidithrix → Acidithrix sp. C25632Open in IMG/M
3300032076|Ga0306924_10652897Not Available1186Open in IMG/M
3300032076|Ga0306924_11607759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus685Open in IMG/M
3300032091|Ga0318577_10338952Not Available719Open in IMG/M
3300032160|Ga0311301_10289325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2640Open in IMG/M
3300032160|Ga0311301_11660445All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300032770|Ga0335085_11439653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria720Open in IMG/M
3300032828|Ga0335080_10417558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1437Open in IMG/M
3300032828|Ga0335080_10479737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1323Open in IMG/M
3300032828|Ga0335080_10486660All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1312Open in IMG/M
3300032828|Ga0335080_11936067Not Available572Open in IMG/M
3300032895|Ga0335074_11290871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia604Open in IMG/M
3300033290|Ga0318519_10664831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2635Open in IMG/M
3300033290|Ga0318519_10746157All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia600Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil35.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.66%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.21%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.52%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.14%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.76%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.76%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.76%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.76%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.07%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.07%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.07%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.07%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.07%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.38%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.38%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.38%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.38%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.38%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.38%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.69%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.69%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.69%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.69%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.69%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.69%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.69%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004555Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 7 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027568Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028015Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10960664033300000955SoilIHGWLAGRAAQLQGWKLLVATSIAAGLGLVMILLKDLV
JGIcombinedJ26739_10123096123300002245Forest SoilTFHGWNAARAAQLQGWRLAAATSVAAVLGLAMVALKNLVITHLH*
Ga0062387_10162921113300004091Bog Forest SoilQLHRWQLFFTTSIAAALGLVMIAPKDFVLTHLHWRPALAG*
Ga0062386_10027090523300004152Bog Forest SoilIVLLTVHGWLAGRAAQLHSWQLVVATSIAAALGLVMVALKDLVLIHLH*
Ga0068922_115531613300004555Peatlands SoilAAAIVLLTVHGWLAGRAAQLHSWQLVVATSIAAALGLVMVALKDLVLIHLH*
Ga0066395_1080039813300004633Tropical Forest SoilRAALAAQLRGWQLMAACSVAAALGLIMILLKDLVLIHLH*
Ga0066683_1091404623300005172SoilGWSAGRAAHLAGRTLLTATLVAAALGLVMVLLKDLVLIHLH*
Ga0070708_10081812613300005445Corn, Switchgrass And Miscanthus RhizosphereWSASRAAQLRGRQLLVATSVAAALGLVMIALKDLVLLHFH*
Ga0070734_1082921623300005533Surface SoilRAAQLQGHRLLLATSVAAALGIVMILLKDLVLIHLH*
Ga0066903_10101546313300005764Tropical Forest SoilVVVLLIVHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH*
Ga0066903_10192977233300005764Tropical Forest SoilGGLRGRQLLIATSIAVGLGLAMIGLKDLVLIHLH*
Ga0066903_10320049823300005764Tropical Forest SoilVVVLLIVHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLGLIHLH*
Ga0070766_1046828713300005921SoilLVLIMHAWIAGRAAKLHGWRLAVAVSVAAALGLTMVALKDLVLIHLH*
Ga0080027_1041446123300005993Prmafrost SoilAIVLLTFHGWSASRAAQLHGRQLIFATSVALALGLVMIALKDLVLNHLH*
Ga0070717_1037544223300006028Corn, Switchgrass And Miscanthus RhizosphereSAGRAAHLAGRALLIATSVAAVLGVAMVLLKDLVLIHMH*
Ga0075028_10063563623300006050WatershedsATILVLIMHAWTAGRAAKLHGWRLAAAVSVAAALGLTMVALKDLVLIHLH*
Ga0075030_10119206623300006162WatershedsHAWIAGRAARLHGWQLFFTVSVAAALGLTMVALKDLVLIHLH*
Ga0070712_10132932213300006175Corn, Switchgrass And Miscanthus RhizosphereLAGRAAQLQGWKLLVATSIAAGLGLVMILLKDLVLIHLH*
Ga0079221_1160821413300006804Agricultural SoilILLLTFHGWSAGRASRLHGWPLAGVTAVAAALGLVMVMLKDLVLIHLH*
Ga0075435_10020150513300007076Populus RhizosphereAAQFRGWKLAGVTSVATGLGLVMILLKDLVLVHLH*
Ga0075423_1150874913300009162Populus RhizosphereAQLQGWKLVMVTSIAAGLGLVMILLKDLVLVHLH*
Ga0116215_134029713300009672Peatlands SoilLTVHGWLAGRAAQLHNWPLVVATSIAAALGLVMVALKDFVLIHLH*
Ga0116223_1077535313300009839Peatlands SoilTVHGWLAGRAAQLRSWQLLLATSIAAALGLVMIALKDLVLIHLH*
Ga0126380_1141443313300010043Tropical Forest SoilRASHLRGWQLAGVTSIAAALGLVMVVLKDLVLIHLH*
Ga0126384_1078667733300010046Tropical Forest SoilAQLQGRKLLVATSVAAGLGLVMILLKDLALLHLH*
Ga0099796_1001248543300010159Vadose Zone SoilMVHAWAAGRSARLHGRQLLFTISIAAGLGLAMIVLKDVVLTHVH*
Ga0074044_1108014823300010343Bog Forest SoilAARAAQLRSWQLFFATSTAAALGLVMIALKDFVLIHLH*
Ga0126370_1131449623300010358Tropical Forest SoilGRAAHLAGRALLAATSVAAVLGIVMIVLKDIVLIHLH*
Ga0126378_1185427933300010361Tropical Forest SoilAGRAAQLRGRKLLYATSVAAALGLVMILLKDLVLIHLH*
Ga0126378_1238805823300010361Tropical Forest SoilGLAATILLLIAHAWIAGRAAKLRGWQLVFAVSLAAALGLTMVVLKDLVLIHLH*
Ga0126377_1027675033300010362Tropical Forest SoilLAGRAAQLRGRKLLYATSVAAALGLVMILLKDLVLIHLH*
Ga0126377_1126896523300010362Tropical Forest SoilLAGRAAQLRGRKLVLVTLIAAGLGLVMILLKDLVLIHLH*
Ga0126381_10216149223300010376Tropical Forest SoilFHGWSAGRASHLRGWQLAGVTSIAAALGLVMVVLKDLVLIHLH*
Ga0136449_10236315613300010379Peatlands SoilAIVLLTVHGWLAGRAAQLRSWQLFFATSIAAALGLVMVALKDLVLIHLH*
Ga0137776_182825023300010937SedimentAGRSAQLHGRQLLLASSIALGLGMAMILLKDLVLTHLH*
Ga0150983_1600020113300011120Forest SoilGRAAKLHSWQLYVTTSIAAALGLVMIALKNLVLIHLH*
Ga0137370_1005478123300012285Vadose Zone SoilFHGWSAGRASQLRGWQLAAVTSVAAALGLVMVVLKDLVLIHLH*
Ga0137370_1039020113300012285Vadose Zone SoilRAAQLRGWKLAGVTSVATGLGLVMILLKDLVLVHLH*
Ga0137394_1050217023300012922Vadose Zone SoilVGWSAGRASRLRGWRLAVTTSIAAALGLVMVALKELVILHLH*
Ga0164303_1033462713300012957SoilCLAGRAAQLRRWQLFFATSIAAALGLVMIALKDLVLIHLH*
Ga0157370_1212177223300013104Corn RhizosphereSDHPRLAGRAAQLQGWKLLVATSIAAGLGLVMILFKDLVLIHLH*
Ga0157372_1272928213300013307Corn RhizosphereGRAAQFRGWKLAGVTSVATGLGLVMILLKDLVLVHLH*
Ga0132256_10316578413300015372Arabidopsis RhizosphereLAGRAAQFRGWKLDGVTSVATELGLVMILLKDLVLVHLH*
Ga0132257_10460585423300015373Arabidopsis RhizosphereGWSAGRASRLRGWQLAGVTSVAAALGLVMVFLKDLVLIHLH*
Ga0132255_10473446113300015374Arabidopsis RhizosphereRASRLRGWQLAGVTSVAAALGLVMVLLKDLVLIHLH*
Ga0182035_1061666523300016341SoilAGRSAQLRGRKLLVATSVAAGLGLVMILLKDLVLIHLH
Ga0182035_1130729323300016341SoilAWAAGRSARLRGRQLLVTTSIAAGLGLAMILLKDVILTHVH
Ga0182035_1211316923300016341SoilGWSAARSAQLRRWQLAFATSVAVALGLVMVALKDLVLQHLH
Ga0182038_1087995613300016445SoilALAAQLRGWQLFGACSVAAALGLIMILLKDLVLIHLH
Ga0187779_1025149123300017959Tropical PeatlandRSAQLRGRQLLIATSIAAGLGLAMVALKDLVLIHLH
Ga0187780_1069595723300017973Tropical PeatlandMVHAWAAGRSAQLRGRQFLVATSIAAGLGLAMVALKDLVLIHLH
Ga0187777_1087919813300017974Tropical PeatlandRAAQLQRGKLLVATSIAAGLGLIMILLKDLVLIHLH
Ga0187805_1005546833300018007Freshwater SedimentTAHGWTAGRAAQLTGWQLTACTSIAAVLGLVMVALKNLVIVHLH
Ga0187890_1088156113300018044PeatlandVHGWLAGRAAQLRSWQLFFATSIAAALGLVMVALKDLVLIHLH
Ga0187766_1036102213300018058Tropical PeatlandAGRSAQLRGRQLLIATSIAAGLGLAMVALKDLVLIHLH
Ga0210395_1047257213300020582SoilGLAAAIVLLTVHGWLAGRAAKLHSWQLFFATSIAAALGLVMIALKDLVLIHLH
Ga0210388_1135264513300021181SoilLTVHGWLAGRAAQLRGWQLFFATSIAAALGLVMIGLKDFVLIHLH
Ga0213882_1008613623300021362Exposed RockAWVAGRAAQLRGRRLLFSTSIGAALGLAMILLKDIVLARLH
Ga0210397_1024763823300021403SoilWSAGRAAQLRRWQLFFATSVAAALGLLMIALKDLVLIHLH
Ga0210389_1084382413300021404SoilAWAAGRSARLHGRQLLFTISIAAGLGLAMIVLKDVVLTHVH
Ga0210387_1003478773300021405SoilAIVLLTVHGWLAGRAAQLRSWPLFFATSIAAALGLAMIALKDLVLIHLH
Ga0210394_1113412913300021420SoilAIVLLTVHGCLAGRAAQLRRWQLFFATSIAAALGLVMIALKDLVLIHLH
Ga0210390_1056253923300021474SoilLAGRAAQLRSWQLLFATSFAAALGLVMILLKDLVLTHLH
Ga0210390_1056849833300021474SoilLAAAIVLLTVHGWLAGRAAKLHSWQLFFATSIAAALGLLMIALKDLVLIHLH
Ga0210390_1160153623300021474SoilVLLLTFHGWLAGRAAQLRGWQLFFATSFAAALGLVMVLLKDLVLTHLH
Ga0210402_1116653823300021478SoilARAAQLRRWQLFFATSVAAALGLVMIALKDLVLIHLH
Ga0210409_1079368813300021559SoilGWSAGREAQLRRWQLFFATSVAAALGLLMIALKDLVLIHLH
Ga0207692_1028589923300025898Corn, Switchgrass And Miscanthus RhizosphereRAAHLAGRALLIATSVAAVLGVAMVLLKDLVLIHMH
Ga0207654_1116509323300025911Corn RhizosphereLAGRAAQFRGWKLAGVTSVATGLGLVMILLKDLVLVHLH
Ga0207694_1091855123300025924Corn RhizosphereAAQFRGWKLAGVTSVATGLGLVMILLKDLVLVHLH
Ga0208042_112393913300027568Peatlands SoilVVAIVLLTVHGWLAGRAAQLRGWQLFFATSIAAGLGLVMVALKDFVLIHLH
Ga0208324_116949713300027604Peatlands SoilGRAAQLRSWPLVVATSIAAALGLVMVALKDFVLIHLH
Ga0207826_108168913300027680Tropical Forest SoilVHGWSAARSAQLQGRRLLWASSVALALGLVMVLLKDLVLIHLH
Ga0209038_1007809213300027737Bog Forest SoilAAQLHRWQLFFTTSIAAALGLEMIARTDFVLIHLH
Ga0209073_1005499623300027765Agricultural SoilRSARLHGRQLLFTISIAAGLGLAMIVLKDVVLTHVH
Ga0209074_1022019323300027787Agricultural SoilWLAGRAAQFQGWKLAGITLVATGLGLVMILLKDLVLVHLH
Ga0209624_1042636123300027895Forest SoilGRAAQLRSWQLFLATSFAAALGLVMILLKDLVLAHLH
Ga0209583_1009363023300027910WatershedsGLAATILLLIMHAWIAGRAARLHGWQLFFTVSVAAALGLTMVALKDLVLIHLH
Ga0265353_101446113300028015SoilLLTFHGWLAARAAQLRSWQLFFATSIAAALGLVMIALKDFVLIHLH
Ga0302231_1033682013300028775PalsaMAGRSSRPVAQLRSWQLFFATSIAAALGLLMIGLKDLVLIHLH
Ga0311357_1074345513300030524PalsaRSSRPVAQLRSWQLFFATSIAAALGLLMIGLKDLVLIHLH
Ga0311354_1170014713300030618PalsaGRAAQLRSWQLFFATSIAAALGLVMIGLKDLVLIHLH
Ga0310038_1001352673300030707Peatlands SoilTVHGWLAGRAAQLRSWQLFFATSIAAALGLVMVALKDFVLIHLH
Ga0307498_1015417623300031170SoilGRASRLRGWPLAGVTATAAALGLVMVVLKDLVLIHLH
Ga0318541_1077181023300031545SoilVGLVTVVILLIVHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318573_1011510513300031564SoilVHSWAAGRSAQLRGRRLLFATSIAAGLGLAMILLNDLVLIHLH
Ga0318573_1028819833300031564SoilAAQLQGWKLVMVSSIAVGLGLVMILLKDLVLVHLH
Ga0310915_1009905513300031573SoilLAGRAAQLQGWKLLVATSIAAGLGLVMILLKDLVLIHLH
Ga0318555_1044099123300031640SoilVLLVIHGWSAARSAQLRRWQLAFATSVAVALGLVMVALKDLVLQHLH
Ga0318555_1047705623300031640SoilVGLVTVVILLIVHAWAAGRSAQLRGRQLLFATSIAAGLGLAMFLLKDLVLIHLH
Ga0318561_1012108913300031679SoilWLAGRAAQLQSWRLLVATSIAAGLGLVMILLKDLVLTHLH
Ga0318561_1020774923300031679SoilSLPAVARSAQRHGVQLIFTTSSAAALGLVMVALKDLVLLHLP
Ga0318561_1083200513300031679SoilAGRSAQLHGWRLLFAVSIAAGLGMIMILLKDVVLTHLH
Ga0318572_1077485913300031681SoilLAGRAAQLQGWKLVIVTSIAAALGLVMILLKDLVLIHLH
Ga0318560_1048982523300031682SoilRAAQLQGRKLLFATSVAAGLGLVMILLKDLVLIHLH
Ga0310686_10185421713300031708SoilSGAIGPAARLAAWVATSFAAALGLVMILLKDLVLIHLH
Ga0318496_1055743213300031713SoilVHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318493_1031240123300031723SoilWTAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318501_1041963513300031736SoilAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318501_1044999213300031736SoilAAQLRCWRLLAACSVAAAPGLIMILLEDLVLIHLH
Ga0307468_10146552413300031740Hardwood Forest SoilRAARLRGWKLAGVTSVAAGLGLVMILLKDLVLIHLH
Ga0318492_1034477513300031748SoilVHAWAAGRSAQLHGRQLLVTTSIAAGLGLAMVALKDLVLIHLH
Ga0318537_1026727423300031763SoilGWLAGRAAQLQGWKLVMVSSIAVGLGLVMILLKDLVLVHLH
Ga0318537_1032354223300031763SoilRAARLQSWKLLVATSIAAGLGLVMILLKDLVLTHLH
Ga0318535_1008003133300031764SoilVGLITVVVLLMVHAWAAGRSAQLHGRQLLGTTSIAGGLGLAMVALKDLVLIHLH
Ga0318535_1010920733300031764SoilSWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318565_1017040613300031799SoilAAGRSAQLRGRQLLFATSIAAGLGLAMFLLKDLVLIHLH
Ga0318497_1009124133300031805SoilIVLLVVNGWSAARSAQLRSWQLAFATSVAVALGLVMVLLKDLVLQHLH
Ga0318497_1056158513300031805SoilTAHGWLAARAAKLRGWRLLFTVSAAVALGLVMVLLKDLVLIHLH
Ga0307478_1071341223300031823Hardwood Forest SoilGRAAQLRGWQLTACTSIAAVLGLVMVALKNLVIVHLH
Ga0310917_1046993323300031833SoilLAGRAAQLQSWKLVVATSIAAGLGLVMILLKDLVLIHLH
Ga0318517_1016187623300031835SoilVTVVVLLIVHAWTAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318511_1023946723300031845SoilLVTVVILLIVHAWAAGRSAQLRGRQLLFATSIAAGLGLAMFLLKDLVLIHLH
Ga0306919_1051537423300031879SoilAGRSARLRGRQLLVTTSIAAGLGLAMILLKDVILTHVH
Ga0306919_1084368913300031879SoilVTVVILLVIHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318544_1014880713300031880SoilGWLAGRAAQLQRGKLLVATAIAAGLGLVMILLKDLVLIHLH
Ga0318551_1080760113300031896SoilAWIAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0318520_1046933613300031897SoilVVLLIVHAWAAGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0306923_1087949413300031910SoilVHAWAAGRSARLRGRQLLVTTSIAAGLGLAMILLKDVILTHVH
Ga0306923_1088521823300031910SoilGRSAQLRGRRLLFATSIAAGLGLAMILLKDLVLIHLH
Ga0306923_1195785523300031910SoilRAAQLRGRQLVFVTSAAAGLGLVMILLKDLVLLHLH
Ga0310913_1063304323300031945SoilGRSAQLRGRRLLFATSIAAGLGLAMILLNDLVLIHLH
Ga0306926_1017765513300031954SoilVVILLIVHAWAAGRSAQLRGRQLLFATSIAAGLGLAMFLLKDLVLIHLH
Ga0306926_1071847913300031954SoilAARAAKLHGWQLLLAVSVAGALGLIMILLKDLVLVHLH
Ga0306922_1131287813300032001SoilLAGRAAQLQGWKLLWATAVAAALGLVMILLKDLVLIHLH
Ga0318562_1014147613300032008SoilARAAQLRGRKLLVATSIAAGLGLVMILLKELLLVHLH
Ga0318562_1078644313300032008SoilAGRAAQLQGRRLLVATSIAAGLGLVMILLKDLVLLHLH
Ga0318563_1010820413300032009SoilLAGRAAQLQGRKLVIVTSIAASLGLVMILLKDLVLIHLH
Ga0318569_1015917913300032010SoilVPAVRAAKLHGWQLLLAVSVAGALGLIMILLKDLVLVHLH
Ga0318545_1012103213300032042SoilIVLLVIHGWSAARSAQLRRWQLAFATSVAVALGLVMVALKDLVLQHLH
Ga0318506_1025424013300032052SoilVTAVLVLMVHAWAAGRSARLRGRQLLVTTSIAAGLGLAMILLKDVVLTHVH
Ga0318524_1050927623300032067SoilIAGRAAKLHGWQLVFAVSVAATLGLTMVVLKNLVLIHLH
Ga0306924_1065289733300032076SoilSAQLHGRQLLVTTSIAAGLGLAMVALKDLVLIHLH
Ga0306924_1160775923300032076SoilMGGRAIGQLHGRQLLFATSITADLGLAMILLKDLILIHLR
Ga0318577_1033895213300032091SoilAGRAAQLQSWKLLVATSVAAGLGLVMILLKDLVLTHLH
Ga0311301_1028932553300032160Peatlands SoilRAAQLHSWQLLLATSIAAALGLVMIALKDLVLIHLH
Ga0311301_1166044513300032160Peatlands SoilAIVLLTVHGWLAGRAAQLRSWQLFFATSIAAALGLVMVALKDLVLIHLH
Ga0335085_1143965323300032770SoilVVLLMFHAWTAGRTAQLRGRQLLFATSIAAGLGLAMIVLKDVVLTHVH
Ga0335080_1041755813300032828SoilRAAQLQSWKLLVATSIAAGLGLVMILLKDLVLTHLH
Ga0335080_1047973713300032828SoilWSAGRASRLRGWQLAAVTSIAAALGLVMVVLKDLVLIHLH
Ga0335080_1048666013300032828SoilVAAIVLLTFHAWLAGRAAQLRTWQLFFATSIAAALGLVMIALKDLVLIYLH
Ga0335080_1193606713300032828SoilGRAARLQSWKLLVATSIAAGLGLVMILLKDLVLTHLH
Ga0335074_1129087123300032895SoilLAGRAAQLQGWKLLVATSIAAGLGLVMILLKDLVLTHLH
Ga0318519_1066483123300033290SoilMAGRAAQLQGRKLLLATSVAAVLGLVMILLKDLVLIHLH
Ga0318519_1074615723300033290SoilWAAGRSAQLHGRQLLGTTSIAGGLGLAMVALKDLVLIHLH


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