Metagenome / Metatranscriptome Family F050830

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050830
Family Type	Metagenome / Metatranscriptome
Number of Sequences	144
Average Sequence Length	46 residues
Representative Sequence	EGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Number of Associated Samples	79
Number of Associated Scaffolds	144

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.33 %
% of genes near scaffold ends (potentially truncated)	93.06 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.444 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.389 % of family members)
Environment Ontology (ENVO)	Unclassified (79.861 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.389 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 34.78% Coil/Unstructured: 65.22%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 144 Family Scaffolds
PF04392	ABC_sub_bind	34.72
PF03401	TctC	7.64
PF08734	GYD	4.17
PF03928	HbpS-like	2.08
PF00355	Rieske	2.08
PF02705	K_trans	1.39
PF13683	rve_3	1.39
PF07369	DUF1488	1.39
PF15780	ASH	1.39
PF01977	UbiD	0.69
PF07813	LTXXQ	0.69
PF13594	Obsolete Pfam Family	0.69
PF01527	HTH_Tnp_1	0.69
PF00375	SDF	0.69
PF01636	APH	0.69
PF01590	GAF	0.69

COG ID	Name	Functional Category	% Frequency in 144 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	34.72
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	7.64
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	4.17
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	2.78
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	1.39
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.44 %
Unclassified	root	N/A	30.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.36 %
Unclassified	root	N/A	30.56 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.89 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.89 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.89 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	4.17 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.39 %
Microvirga arabica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	0.69 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000893\|AP72_2010_repI_A001DRAFT_1059564	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300004633\|Ga0066395_10357104	Not Available	813	Open in IMG/M
3300005332\|Ga0066388_101750132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1102	Open in IMG/M
3300005363\|Ga0008090_10118388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	862	Open in IMG/M
3300005713\|Ga0066905_101501368	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005764\|Ga0066903_102994708	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300005764\|Ga0066903_104515432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300005764\|Ga0066903_104754160	Not Available	722	Open in IMG/M
3300005764\|Ga0066903_106756472	Not Available	596	Open in IMG/M
3300005764\|Ga0066903_107848053	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300005764\|Ga0066903_108026450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300009792\|Ga0126374_11245369	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300010046\|Ga0126384_10259272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1409	Open in IMG/M
3300010047\|Ga0126382_12079009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300010359\|Ga0126376_12301001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300010359\|Ga0126376_12428508	Not Available	571	Open in IMG/M
3300010359\|Ga0126376_13227370	Not Available	504	Open in IMG/M
3300010361\|Ga0126378_12219979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300010366\|Ga0126379_12555247	Not Available	609	Open in IMG/M
3300010376\|Ga0126381_100521696	Not Available	1679	Open in IMG/M
3300010398\|Ga0126383_10425287	Not Available	1371	Open in IMG/M
3300010398\|Ga0126383_12500550	Not Available	601	Open in IMG/M
3300012211\|Ga0137377_10956425	Not Available	788	Open in IMG/M
3300012683\|Ga0137398_10642930	Not Available	735	Open in IMG/M
3300012971\|Ga0126369_10624889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1149	Open in IMG/M
3300012971\|Ga0126369_12029963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	663	Open in IMG/M
3300012971\|Ga0126369_12872691	Not Available	564	Open in IMG/M
3300016270\|Ga0182036_10626620	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300016270\|Ga0182036_11081902	Not Available	663	Open in IMG/M
3300016294\|Ga0182041_10112477	Not Available	2026	Open in IMG/M
3300016294\|Ga0182041_10424550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1137	Open in IMG/M
3300016294\|Ga0182041_12122628	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300016319\|Ga0182033_10718284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	876	Open in IMG/M
3300016341\|Ga0182035_11075992	Not Available	715	Open in IMG/M
3300016341\|Ga0182035_11863650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300016357\|Ga0182032_10634014	Not Available	892	Open in IMG/M
3300016387\|Ga0182040_11289535	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300021560\|Ga0126371_11748965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300021560\|Ga0126371_13560977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300031545\|Ga0318541_10137131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1336	Open in IMG/M
3300031545\|Ga0318541_10142492	Not Available	1311	Open in IMG/M
3300031546\|Ga0318538_10018440	Not Available	3064	Open in IMG/M
3300031546\|Ga0318538_10244536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	963	Open in IMG/M
3300031546\|Ga0318538_10289867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	881	Open in IMG/M
3300031549\|Ga0318571_10405808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300031561\|Ga0318528_10029426	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300031573\|Ga0310915_10003732	All Organisms → cellular organisms → Bacteria	8268	Open in IMG/M
3300031573\|Ga0310915_10129453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1730	Open in IMG/M
3300031573\|Ga0310915_10965688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	595	Open in IMG/M
3300031640\|Ga0318555_10154189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1230	Open in IMG/M
3300031640\|Ga0318555_10540594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
3300031640\|Ga0318555_10794482	Not Available	511	Open in IMG/M
3300031668\|Ga0318542_10003451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5213	Open in IMG/M
3300031668\|Ga0318542_10159821	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300031680\|Ga0318574_10087412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1709	Open in IMG/M
3300031680\|Ga0318574_10093898	Not Available	1654	Open in IMG/M
3300031681\|Ga0318572_10174623	Not Available	1248	Open in IMG/M
3300031682\|Ga0318560_10120472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1372	Open in IMG/M
3300031719\|Ga0306917_10202146	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300031719\|Ga0306917_10312066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1216	Open in IMG/M
3300031719\|Ga0306917_10489318	Not Available	965	Open in IMG/M
3300031719\|Ga0306917_11170483	Not Available	597	Open in IMG/M
3300031719\|Ga0306917_11441372	Not Available	530	Open in IMG/M
3300031719\|Ga0306917_11571413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300031723\|Ga0318493_10475852	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300031723\|Ga0318493_10552276	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300031724\|Ga0318500_10590007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300031724\|Ga0318500_10596489	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031736\|Ga0318501_10020516	Not Available	2770	Open in IMG/M
3300031736\|Ga0318501_10107055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1402	Open in IMG/M
3300031736\|Ga0318501_10133736	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031736\|Ga0318501_10153992	Not Available	1184	Open in IMG/M
3300031744\|Ga0306918_10030856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3384	Open in IMG/M
3300031744\|Ga0306918_11000366	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300031748\|Ga0318492_10006250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4623	Open in IMG/M
3300031751\|Ga0318494_10298895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	928	Open in IMG/M
3300031763\|Ga0318537_10005014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4316	Open in IMG/M
3300031763\|Ga0318537_10046132	Not Available	1574	Open in IMG/M
3300031764\|Ga0318535_10056521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1651	Open in IMG/M
3300031764\|Ga0318535_10201021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	891	Open in IMG/M
3300031765\|Ga0318554_10357130	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031770\|Ga0318521_10989751	Not Available	515	Open in IMG/M
3300031771\|Ga0318546_11306713	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031777\|Ga0318543_10004446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4475	Open in IMG/M
3300031779\|Ga0318566_10209003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300031781\|Ga0318547_10673869	Not Available	642	Open in IMG/M
3300031782\|Ga0318552_10131819	Not Available	1249	Open in IMG/M
3300031794\|Ga0318503_10154420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300031795\|Ga0318557_10165913	Not Available	1002	Open in IMG/M
3300031833\|Ga0310917_10011114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4921	Open in IMG/M
3300031833\|Ga0310917_10289987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300031879\|Ga0306919_10226767	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300031879\|Ga0306919_10812072	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031879\|Ga0306919_11369326	Not Available	534	Open in IMG/M
3300031890\|Ga0306925_10419083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1433	Open in IMG/M
3300031890\|Ga0306925_10481532	Not Available	1323	Open in IMG/M
3300031890\|Ga0306925_10715409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	1046	Open in IMG/M
3300031890\|Ga0306925_11513119	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031890\|Ga0306925_11513287	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031890\|Ga0306925_11907589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	564	Open in IMG/M
3300031893\|Ga0318536_10236612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300031896\|Ga0318551_10040366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2312	Open in IMG/M
3300031896\|Ga0318551_10155382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1250	Open in IMG/M
3300031897\|Ga0318520_10021574	Not Available	3078	Open in IMG/M
3300031910\|Ga0306923_10377394	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300031910\|Ga0306923_10386230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1594	Open in IMG/M
3300031910\|Ga0306923_10679166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1149	Open in IMG/M
3300031910\|Ga0306923_10824258	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300031910\|Ga0306923_10926404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300031910\|Ga0306923_11229402	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300031941\|Ga0310912_10197094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1538	Open in IMG/M
3300031941\|Ga0310912_11450301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	517	Open in IMG/M
3300031942\|Ga0310916_10226702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1569	Open in IMG/M
3300031942\|Ga0310916_11572260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031945\|Ga0310913_10109820	Not Available	1874	Open in IMG/M
3300031945\|Ga0310913_10374181	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300031945\|Ga0310913_10730752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	699	Open in IMG/M
3300031946\|Ga0310910_10515135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	949	Open in IMG/M
3300031946\|Ga0310910_11024810	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031947\|Ga0310909_11492539	Not Available	538	Open in IMG/M
3300031954\|Ga0306926_10007758	All Organisms → cellular organisms → Bacteria	11667	Open in IMG/M
3300031954\|Ga0306926_12164257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300031954\|Ga0306926_12261653	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031954\|Ga0306926_12418131	Not Available	578	Open in IMG/M
3300031959\|Ga0318530_10093048	Not Available	1191	Open in IMG/M
3300031959\|Ga0318530_10180171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300031959\|Ga0318530_10182725	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300031959\|Ga0318530_10204745	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300032001\|Ga0306922_10622032	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300032001\|Ga0306922_10761849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1014	Open in IMG/M
3300032010\|Ga0318569_10358447	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300032035\|Ga0310911_10004147	Not Available	6153	Open in IMG/M
3300032051\|Ga0318532_10026283	Not Available	1915	Open in IMG/M
3300032055\|Ga0318575_10653200	Not Available	532	Open in IMG/M
3300032063\|Ga0318504_10091087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1353	Open in IMG/M
3300032068\|Ga0318553_10741468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300032076\|Ga0306924_10582555	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300032090\|Ga0318518_10304112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300032091\|Ga0318577_10043077	Not Available	2001	Open in IMG/M
3300032094\|Ga0318540_10045188	Not Available	1961	Open in IMG/M
3300032094\|Ga0318540_10072812	Not Available	1581	Open in IMG/M
3300032261\|Ga0306920_101976497	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300033289\|Ga0310914_10616640	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300033289\|Ga0310914_11347780	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.75%
Loam	Environmental → Terrestrial → Soil → Loam	6.25%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	80.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.69%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A001DRAFT_10595641	3300000893	Forest Soil	FVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066395_103571043	3300004633	Tropical Forest Soil	FSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066388_1017501321	3300005332	Tropical Forest Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHLTVDCRVFKER*
Ga0008090_101183881	3300005363	Tropical Rainforest Soil	EGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPRFTVDCRVFKER*
Ga0066905_1015013681	3300005713	Tropical Forest Soil	RFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER*
Ga0066903_1029947081	3300005764	Tropical Forest Soil	HPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066903_1045154321	3300005764	Tropical Forest Soil	DHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER*
Ga0066903_1047541601	3300005764	Tropical Forest Soil	IDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066903_1067564721	3300005764	Tropical Forest Soil	TYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066903_1078480532	3300005764	Tropical Forest Soil	LGSEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0066903_1080264502	3300005764	Tropical Forest Soil	LASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCCVFKEL*
Ga0126374_112453692	3300009792	Tropical Forest Soil	VTYFGICVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRFKER*
Ga0126384_102592723	3300010046	Tropical Forest Soil	SEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0126382_120790091	3300010047	Tropical Forest Soil	VTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTV
Ga0126376_123010011	3300010359	Tropical Forest Soil	FSLGSEGVTYFGISIDHPAIPTSSLLKQSERKPGTIHQPHFTVDCRVFKER*
Ga0126376_124285082	3300010359	Tropical Forest Soil	DHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0126376_132273702	3300010359	Tropical Forest Soil	PSGRFSLGPEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER*
Ga0126378_122199792	3300010361	Tropical Forest Soil	PAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER*
Ga0126379_125552472	3300010366	Tropical Forest Soil	GIFIDHPAIPTSSLLKQPERKPGAIHQPHLTVDCRVFKER*
Ga0126381_1005216961	3300010376	Tropical Forest Soil	SLGSEGVTHFGIFIDHPAIPTSSLLKQPERKPGAIHQRHFTVDCRVFKER*
Ga0126383_104252872	3300010398	Tropical Forest Soil	RLASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPDRKPGAIHQPHFTVDCRVFKER*
Ga0126383_125005502	3300010398	Tropical Forest Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER*
Ga0137377_109564252	3300012211	Vadose Zone Soil	VTYSGLLLDHPAIQKSLLMKQSDRKPGAIHYPRHFTVQCRVFKEG*
Ga0137398_106429301	3300012683	Vadose Zone Soil	GRFTLGPDGVTYSGLLLDHPAIQISTLVRQPGNKFGAIHQPHFSVECRVFKER*
Ga0126369_106248893	3300012971	Tropical Forest Soil	LASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQRHFTVDCRVFKER*
Ga0126369_120299633	3300012971	Tropical Forest Soil	DHPAIPTSSLLKQPERKPGAIHQPRFTLDCRVFKQR*
Ga0126369_128726911	3300012971	Tropical Forest Soil	SPSGRFSLGSEGVTYFGISIDHPAIPTSSLLKQSERKPGTIHQPHFTVDCRVFKERS*
Ga0182036_106266202	3300016270	Soil	LGSEGVTYFGIFIDHPAIPTSSLLKQPERNPGAIHQPHFTVDCRVFKEC
Ga0182036_110819021	3300016270	Soil	IFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0182041_101124773	3300016294	Soil	SGRFSLGSEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0182041_104245502	3300016294	Soil	PSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0182041_121226281	3300016294	Soil	ASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0182033_107182843	3300016319	Soil	YFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0182035_110759922	3300016341	Soil	YFGIFIDHPTIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0182035_118636502	3300016341	Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTMDCRVFKKR
Ga0182032_106340141	3300016357	Soil	IFIDHPAIPTSSLLKQPERKPGAIHQPRFTVDCRVFKEH
Ga0182040_112895351	3300016387	Soil	SPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPGRKPGAIHQPHFTVDCRVFKER
Ga0126371_117489652	3300021560	Tropical Forest Soil	EGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0126371_135609772	3300021560	Tropical Forest Soil	DHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318541_101371312	3300031545	Soil	VTYFGIFVDHPAIPASSLLKQPERKPGAIHLPHFTVDCRVFKQR
Ga0318541_101424922	3300031545	Soil	FSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318538_100184401	3300031546	Soil	SPSARFSLGSEGVTYFGIFIEHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318538_102445361	3300031546	Soil	FSLGSEGVTYFGIFVDHPAIPASSLLKQPERKPGAIHLPHFTVDCRVFKQR
Ga0318538_102898671	3300031546	Soil	FIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318571_104058081	3300031549	Soil	ASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318528_100294261	3300031561	Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0310915_100037324	3300031573	Soil	VTYFGIFIDHPTIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0310915_101294533	3300031573	Soil	VDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKGR
Ga0310915_109656881	3300031573	Soil	GRFSLGAEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0318555_101541891	3300031640	Soil	LGPEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318555_105405941	3300031640	Soil	MTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318555_107944821	3300031640	Soil	ASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0318542_100034515	3300031668	Soil	SEGVTDFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318542_101598212	3300031668	Soil	GVTYFGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318574_100874123	3300031680	Soil	FSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318574_100938982	3300031680	Soil	SEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318572_101746231	3300031681	Soil	DHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318560_101204723	3300031682	Soil	LASPSGRFSLGSEGVTYFGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306917_102021461	3300031719	Soil	SEGVTYFGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306917_103120662	3300031719	Soil	VTYFGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306917_104893182	3300031719	Soil	GIFIDHPTIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306917_111704832	3300031719	Soil	VTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVD
Ga0306917_114413722	3300031719	Soil	VAYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306917_115714131	3300031719	Soil	GRFSLGSEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318493_104758522	3300031723	Soil	FGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318493_105522762	3300031723	Soil	YFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318500_105900071	3300031724	Soil	GIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318500_105964892	3300031724	Soil	SLGSEGVTYFGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318501_100205161	3300031736	Soil	GSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318501_101070551	3300031736	Soil	VTYFGIFVDHPAIPASSLLKQRERKPGAIHLPHFTVDCRVFKQR
Ga0318501_101337361	3300031736	Soil	LGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318501_101539921	3300031736	Soil	SLGPEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0306918_100308561	3300031744	Soil	FGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306918_110003662	3300031744	Soil	IDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318492_100062501	3300031748	Soil	TYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318494_102988951	3300031751	Soil	HPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318537_100050145	3300031763	Soil	SEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318537_100461321	3300031763	Soil	GRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318535_100565212	3300031764	Soil	VSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318535_102010211	3300031764	Soil	SLGSEGVAYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318554_103571302	3300031765	Soil	GPEGVTYFGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318521_109897512	3300031770	Soil	ARPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0318546_113067132	3300031771	Soil	SEGVTYFGIFIDHPAIATSSLLKQPERKPGAIHQPHFTVDCRVYKER
Ga0318543_100044465	3300031777	Soil	GSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318566_102090031	3300031779	Soil	TYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318547_106738692	3300031781	Soil	SEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318552_101318191	3300031782	Soil	RLASPSGRFSLGPEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318503_101544201	3300031794	Soil	FSLGAEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318557_101659132	3300031795	Soil	SEGVTYSGIFLDYPAIQPSSLVQQPGRKPGAIHQPHLTVQCRVFKEG
Ga0310917_100111141	3300031833	Soil	EGVTYIGIFIDHPAIPTSSLLKQPERKPGAIHQSHFTLDCRVFKER
Ga0310917_102899871	3300031833	Soil	IFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306919_102267673	3300031879	Soil	DHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKGR
Ga0306919_108120722	3300031879	Soil	RFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306919_113693262	3300031879	Soil	FIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0306925_104190831	3300031890	Soil	VTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKGR
Ga0306925_104815321	3300031890	Soil	EGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0306925_107154091	3300031890	Soil	TYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0306925_115131192	3300031890	Soil	SGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0306925_115132871	3300031890	Soil	ASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERNPGAIHQPHFTVDCRVFKEC
Ga0306925_119075891	3300031890	Soil	VTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318536_102366121	3300031893	Soil	TYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318551_100403663	3300031896	Soil	FSLGSEGVTYFGIFIDHPAIQTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318551_101553823	3300031896	Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318520_100215745	3300031897	Soil	FSLGSEGVTYFGIFIEHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306923_103773942	3300031910	Soil	TYFGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306923_103862303	3300031910	Soil	LGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQQHFTLDCRVFKER
Ga0306923_106791661	3300031910	Soil	SPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306923_108242582	3300031910	Soil	IRLASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0306923_109264041	3300031910	Soil	FGIFIDHPAIATSSLLKQPERKPGAIHQPHFTVDCRVYKER
Ga0306923_112294021	3300031910	Soil	FGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEC
Ga0310912_101970943	3300031941	Soil	VTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0310912_114503011	3300031941	Soil	SPSGRFSLGAEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0310916_102267023	3300031942	Soil	FGIFIDHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0310916_115722601	3300031942	Soil	VTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0310913_101098203	3300031945	Soil	YFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0310913_103741811	3300031945	Soil	GVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0310913_107307521	3300031945	Soil	VTYLGIFIDHPTIPTSSLLKQPERKPGAIHQPHFTVDCRV
Ga0310910_105151353	3300031946	Soil	FSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0310910_110248102	3300031946	Soil	PSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0310909_114925391	3300031947	Soil	SPSGRFSLGPEGVTYFGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306926_100077581	3300031954	Soil	HPTIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306926_121642572	3300031954	Soil	VTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFRERG
Ga0306926_122616531	3300031954	Soil	YFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKGR
Ga0306926_124181311	3300031954	Soil	FGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0318530_100930482	3300031959	Soil	FGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318530_101801712	3300031959	Soil	YFGIFIDQPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318530_101827252	3300031959	Soil	RLASPSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0318530_102047451	3300031959	Soil	EGVTYFGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306922_106220322	3300032001	Soil	SLGSEGVTYFGIFIDHPAIPTSSLLKQPQRKPGAIHHPHFTVDCRVFKER
Ga0306922_107618492	3300032001	Soil	GVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTMDCRVFKKR
Ga0318569_103584472	3300032010	Soil	PSGRFSLGSEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTLDCRVFKER
Ga0310911_100041471	3300032035	Soil	YFGIFIEHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318532_100262832	3300032051	Soil	EGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318575_106532001	3300032055	Soil	YEGVTYFGIFIDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318504_100910871	3300032063	Soil	DHPVIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318553_107414681	3300032068	Soil	FGIFVDHPAIPASSLLKQPERKPGAIHLPHFTVDCRVFKQR
Ga0306924_105825553	3300032076	Soil	VTYFGIFIDHPAIPTSSLLKQPGRKPGAIHQPHFTVDCRVFKER
Ga0318518_103041121	3300032090	Soil	DHPAVPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318577_100430771	3300032091	Soil	ASPSGRFSLGSEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318540_100451881	3300032094	Soil	EGVTYFGIFIDHPAIPPSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0318540_100728122	3300032094	Soil	SPSGRFSLGSEGVTYFGIFVDHPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0306920_1019764972	3300032261	Soil	HPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKEG
Ga0310914_106166403	3300033289	Soil	SLGPEGVTYFGIFIDYPAIPTSSLLKQPERKPGAIHQPHFTVDCRVFKER
Ga0310914_113477802	3300033289	Soil	GIFVDHPAIPTTSLLKQPERKPGAIHQPHFTVDCRVFKER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050830

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences