NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F051392

Metagenome Family F051392

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F051392
Family Type Metagenome
Number of Sequences 144
Average Sequence Length 38 residues
Representative Sequence DAAMRRVLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Number of Associated Samples 124
Number of Associated Scaffolds 144

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 41.67 %
% of genes near scaffold ends (potentially truncated) 27.08 %
% of genes from short scaffolds (< 2000 bps) 72.22 %
Associated GOLD sequencing projects 118
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.222 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.139 % of family members)
Environment Ontology (ENVO) Unclassified
(28.472 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(62.500 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.15%    β-sheet: 0.00%    Coil/Unstructured: 53.85%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 144 Family Scaffolds
PF08323Glyco_transf_5 40.28
PF12833HTH_18 32.64
PF02074Peptidase_M32 7.64
PF02446Glyco_hydro_77 4.86
PF00165HTH_AraC 3.47
PF03168LEA_2 2.08
PF01171ATP_bind_3 1.39
PF03065Glyco_hydro_57 1.39
PF06206CpeT 1.39
PF13419HAD_2 0.69
PF04536TPM_phosphatase 0.69
PF02405MlaE 0.69
PF13578Methyltransf_24 0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 144 Family Scaffolds
COG0297Glycogen synthaseCarbohydrate transport and metabolism [G] 40.28
COG0438Glycosyltransferase involved in cell wall bisynthesisCell wall/membrane/envelope biogenesis [M] 40.28
COG2317Zn-dependent carboxypeptidase, M32 familyPosttranslational modification, protein turnover, chaperones [O] 7.64
COG16404-alpha-glucanotransferaseCarbohydrate transport and metabolism [G] 4.86
COG0037tRNA(Ile)-lysidine synthase TilS/MesJTranslation, ribosomal structure and biogenesis [J] 1.39
COG0301Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)Translation, ribosomal structure and biogenesis [J] 1.39
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 1.39
COG0519GMP synthase, PP-ATPase domain/subunitNucleotide transport and metabolism [F] 1.39
COG06037-cyano-7-deazaguanine synthase (queuosine biosynthesis)Translation, ribosomal structure and biogenesis [J] 1.39
COG1606ATP-utilizing enzyme, PP-loop superfamilyGeneral function prediction only [R] 1.39
COG0767Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter MlaCell wall/membrane/envelope biogenesis [M] 0.69


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.22 %
UnclassifiedrootN/A2.78 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001182|JGI12668J13544_1001054All Organisms → cellular organisms → Bacteria1546Open in IMG/M
3300002245|JGIcombinedJ26739_100392281All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1268Open in IMG/M
3300002909|JGI25388J43891_1025976All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium987Open in IMG/M
3300005174|Ga0066680_10072349All Organisms → cellular organisms → Bacteria2066Open in IMG/M
3300005175|Ga0066673_10090288All Organisms → cellular organisms → Bacteria1627Open in IMG/M
3300005186|Ga0066676_10247134All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300005187|Ga0066675_10094794All Organisms → cellular organisms → Bacteria1956Open in IMG/M
3300005526|Ga0073909_10054609All Organisms → cellular organisms → Bacteria1461Open in IMG/M
3300005533|Ga0070734_10052432All Organisms → cellular organisms → Bacteria2470Open in IMG/M
3300005538|Ga0070731_10059351All Organisms → cellular organisms → Bacteria2542Open in IMG/M
3300005540|Ga0066697_10651148All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300005541|Ga0070733_10001097All Organisms → cellular organisms → Bacteria → Proteobacteria20583Open in IMG/M
3300005541|Ga0070733_10020966All Organisms → cellular organisms → Bacteria4069Open in IMG/M
3300005560|Ga0066670_10488515All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium758Open in IMG/M
3300005566|Ga0066693_10023575All Organisms → cellular organisms → Bacteria1887Open in IMG/M
3300005568|Ga0066703_10438383All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium783Open in IMG/M
3300005591|Ga0070761_10000216All Organisms → cellular organisms → Bacteria → Proteobacteria38280Open in IMG/M
3300005591|Ga0070761_10001810All Organisms → cellular organisms → Bacteria → Proteobacteria13355Open in IMG/M
3300005591|Ga0070761_10015547All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4232Open in IMG/M
3300005610|Ga0070763_10004108All Organisms → cellular organisms → Bacteria → Proteobacteria5496Open in IMG/M
3300005614|Ga0068856_100013187All Organisms → cellular organisms → Bacteria → Proteobacteria8004Open in IMG/M
3300005764|Ga0066903_100580485All Organisms → cellular organisms → Bacteria1934Open in IMG/M
3300005764|Ga0066903_105925014All Organisms → cellular organisms → Bacteria → Proteobacteria641Open in IMG/M
3300005921|Ga0070766_10261778All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1100Open in IMG/M
3300005921|Ga0070766_10267021All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300006034|Ga0066656_10272875All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1089Open in IMG/M
3300006173|Ga0070716_101049412All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium647Open in IMG/M
3300006176|Ga0070765_101173756All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300006358|Ga0068871_101003739All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium777Open in IMG/M
3300006804|Ga0079221_10679724All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300006852|Ga0075433_10442799All Organisms → cellular organisms → Bacteria1145Open in IMG/M
3300007258|Ga0099793_10063313All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1658Open in IMG/M
3300009038|Ga0099829_10899411All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300009093|Ga0105240_10460812All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1421Open in IMG/M
3300009143|Ga0099792_10000094All Organisms → cellular organisms → Bacteria → Proteobacteria34066Open in IMG/M
3300009826|Ga0123355_10031006All Organisms → cellular organisms → Bacteria → Proteobacteria8672Open in IMG/M
3300009826|Ga0123355_10665996All Organisms → cellular organisms → Bacteria → Proteobacteria1209Open in IMG/M
3300010043|Ga0126380_10644710All Organisms → cellular organisms → Bacteria → Proteobacteria842Open in IMG/M
3300010048|Ga0126373_12537316Not Available571Open in IMG/M
3300010322|Ga0134084_10112403All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium881Open in IMG/M
3300010359|Ga0126376_10394658All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1244Open in IMG/M
3300010361|Ga0126378_11637322All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium731Open in IMG/M
3300010361|Ga0126378_12332500All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium611Open in IMG/M
3300010361|Ga0126378_12991239All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium539Open in IMG/M
3300010376|Ga0126381_100718124All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1430Open in IMG/M
3300010376|Ga0126381_101113263All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1141Open in IMG/M
3300010379|Ga0136449_101952316All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium869Open in IMG/M
3300010398|Ga0126383_10127808All Organisms → cellular organisms → Bacteria → Proteobacteria2330Open in IMG/M
3300010401|Ga0134121_10039107All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3869Open in IMG/M
3300012202|Ga0137363_10029353All Organisms → cellular organisms → Bacteria → Proteobacteria3783Open in IMG/M
3300012203|Ga0137399_10044027All Organisms → cellular organisms → Bacteria3193Open in IMG/M
3300012203|Ga0137399_10199330All Organisms → cellular organisms → Bacteria1624Open in IMG/M
3300012211|Ga0137377_10044694All Organisms → cellular organisms → Bacteria → Proteobacteria4071Open in IMG/M
3300012361|Ga0137360_10232378All Organisms → cellular organisms → Bacteria1507Open in IMG/M
3300012582|Ga0137358_10914339All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium574Open in IMG/M
3300012917|Ga0137395_10058308All Organisms → cellular organisms → Bacteria2454Open in IMG/M
3300012924|Ga0137413_10105229All Organisms → cellular organisms → Bacteria1768Open in IMG/M
3300012925|Ga0137419_11579261All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium557Open in IMG/M
3300012927|Ga0137416_10692830All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium895Open in IMG/M
3300012971|Ga0126369_12454095All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium607Open in IMG/M
3300012971|Ga0126369_12710494All Organisms → cellular organisms → Bacteria → Proteobacteria579Open in IMG/M
3300014495|Ga0182015_10000987All Organisms → cellular organisms → Bacteria → Proteobacteria39314Open in IMG/M
3300014501|Ga0182024_11742704All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium700Open in IMG/M
3300015052|Ga0137411_1137161All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1089Open in IMG/M
3300015193|Ga0167668_1053918All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria835Open in IMG/M
3300015371|Ga0132258_10019359All Organisms → cellular organisms → Bacteria → Proteobacteria14778Open in IMG/M
3300016371|Ga0182034_10141164All Organisms → cellular organisms → Bacteria → Proteobacteria1795Open in IMG/M
3300017924|Ga0187820_1034226All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1328Open in IMG/M
3300017927|Ga0187824_10006557All Organisms → cellular organisms → Bacteria → Proteobacteria3277Open in IMG/M
3300017927|Ga0187824_10072370All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1083Open in IMG/M
3300017937|Ga0187809_10280585All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium609Open in IMG/M
3300017959|Ga0187779_11233085All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium527Open in IMG/M
3300017961|Ga0187778_10095962Not Available1839Open in IMG/M
3300017961|Ga0187778_10103880All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1768Open in IMG/M
3300017970|Ga0187783_10011390All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria6536Open in IMG/M
3300017970|Ga0187783_10580869All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium811Open in IMG/M
3300017972|Ga0187781_10456324All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300017973|Ga0187780_11277521All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium539Open in IMG/M
3300017974|Ga0187777_10147177All Organisms → cellular organisms → Bacteria1570Open in IMG/M
3300017974|Ga0187777_11285429Not Available537Open in IMG/M
3300017993|Ga0187823_10051435All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300018058|Ga0187766_10275381All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1083Open in IMG/M
3300018062|Ga0187784_11192458All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium604Open in IMG/M
3300018085|Ga0187772_10866940All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium655Open in IMG/M
3300018431|Ga0066655_10009343All Organisms → cellular organisms → Bacteria → Proteobacteria4180Open in IMG/M
3300018433|Ga0066667_10084261All Organisms → cellular organisms → Bacteria2059Open in IMG/M
3300018468|Ga0066662_10018036All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3880Open in IMG/M
3300018482|Ga0066669_11253065All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium670Open in IMG/M
3300020170|Ga0179594_10107945All Organisms → cellular organisms → Bacteria1005Open in IMG/M
3300020579|Ga0210407_10265730All Organisms → cellular organisms → Bacteria → Proteobacteria1338Open in IMG/M
3300020579|Ga0210407_10484700All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium967Open in IMG/M
3300020581|Ga0210399_10017780All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae5622Open in IMG/M
3300020581|Ga0210399_10481471Not Available1032Open in IMG/M
3300021088|Ga0210404_10478327All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium702Open in IMG/M
3300021171|Ga0210405_10866825All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium688Open in IMG/M
3300021358|Ga0213873_10061151All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300021358|Ga0213873_10122568All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium764Open in IMG/M
3300021402|Ga0210385_10001028All Organisms → cellular organisms → Bacteria → Proteobacteria17638Open in IMG/M
3300021403|Ga0210397_11316692All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium561Open in IMG/M
3300021407|Ga0210383_10357326All Organisms → cellular organisms → Bacteria1259Open in IMG/M
3300021420|Ga0210394_10061354All Organisms → cellular organisms → Bacteria → Proteobacteria3267Open in IMG/M
3300021432|Ga0210384_10008049All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria11042Open in IMG/M
3300021432|Ga0210384_10052921All Organisms → cellular organisms → Bacteria3680Open in IMG/M
3300021444|Ga0213878_10171265All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium907Open in IMG/M
3300021474|Ga0210390_10644149All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300021559|Ga0210409_10037894All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4587Open in IMG/M
3300021560|Ga0126371_11157012All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300026324|Ga0209470_1089232All Organisms → cellular organisms → Bacteria → Proteobacteria1400Open in IMG/M
3300026529|Ga0209806_1150068All Organisms → cellular organisms → Bacteria → Proteobacteria890Open in IMG/M
3300027181|Ga0208997_1005941All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1543Open in IMG/M
3300027480|Ga0208993_1005019All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2218Open in IMG/M
3300027521|Ga0209524_1000296All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria7101Open in IMG/M
3300027591|Ga0209733_1002693All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4256Open in IMG/M
3300027591|Ga0209733_1101473All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium725Open in IMG/M
3300027633|Ga0208988_1117131All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium654Open in IMG/M
3300027635|Ga0209625_1000654All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria8766Open in IMG/M
3300027727|Ga0209328_10159638All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium684Open in IMG/M
3300027853|Ga0209274_10003685All Organisms → cellular organisms → Bacteria → Proteobacteria7284Open in IMG/M
3300027867|Ga0209167_10002416All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria10150Open in IMG/M
3300027869|Ga0209579_10062889All Organisms → cellular organisms → Bacteria → Proteobacteria1965Open in IMG/M
3300027889|Ga0209380_10438099All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium765Open in IMG/M
3300031544|Ga0318534_10670646All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium587Open in IMG/M
3300031561|Ga0318528_10252353All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium946Open in IMG/M
3300031564|Ga0318573_10024378All Organisms → cellular organisms → Bacteria → Proteobacteria2762Open in IMG/M
3300031715|Ga0307476_11390113All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium511Open in IMG/M
3300031720|Ga0307469_10897841All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium820Open in IMG/M
3300031723|Ga0318493_10584163All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium622Open in IMG/M
3300031724|Ga0318500_10528348All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium594Open in IMG/M
3300031736|Ga0318501_10340459All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium805Open in IMG/M
3300031740|Ga0307468_100019225All Organisms → cellular organisms → Bacteria → Proteobacteria2965Open in IMG/M
3300031747|Ga0318502_10396250All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium821Open in IMG/M
3300031751|Ga0318494_10537188All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium682Open in IMG/M
3300031769|Ga0318526_10094035All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1192Open in IMG/M
3300031795|Ga0318557_10241625All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium827Open in IMG/M
3300032001|Ga0306922_10517549All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1271Open in IMG/M
3300032010|Ga0318569_10237048All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium847Open in IMG/M
3300032065|Ga0318513_10243829All Organisms → cellular organisms → Bacteria → Proteobacteria870Open in IMG/M
3300032067|Ga0318524_10538405All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium614Open in IMG/M
3300032068|Ga0318553_10345683All Organisms → cellular organisms → Bacteria → Proteobacteria779Open in IMG/M
3300032180|Ga0307471_103109203All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium588Open in IMG/M
3300032205|Ga0307472_101384762All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium681Open in IMG/M
3300032783|Ga0335079_10017710All Organisms → cellular organisms → Bacteria8140Open in IMG/M
3300033158|Ga0335077_10611604All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1135Open in IMG/M
3300033289|Ga0310914_10893971All Organisms → cellular organisms → Bacteria → Proteobacteria787Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.14%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.33%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland8.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.25%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.86%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.47%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.47%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.47%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.39%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.39%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.39%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut1.39%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.39%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.69%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.69%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.69%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.69%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.69%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.69%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.69%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.69%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.69%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.69%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.69%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.69%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.69%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001182Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009826Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1Host-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015193Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021358Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3Host-AssociatedOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021444Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02EnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027181Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027521Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12668J13544_100105423300001182Forest SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHPWR*
JGIcombinedJ26739_10039228123300002245Forest SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPXPHPWR*
JGI25388J43891_102597623300002909Grasslands SoilLSGYDVRMQRLLISIAVTLLLVVSIAVGVAVARWPHLWR*
Ga0066680_1007234933300005174SoilLSGYDVTMQRLLISIAVTLLLVVSIAVGVAVARWPHLWR*
Ga0066673_1009028823300005175SoilMSGYDAAMRRVLIGLTVALLLVVSIGVGVVVARWPYSHLWR*
Ga0066676_1024713423300005186SoilMSGYDALMRRVLIGLTVALLLVVSIGVGVVVARWPCPHLWR*
Ga0066675_1009479423300005187SoilMSGYDAAMRRVLIGLTVTLLLVLSIGVGVVVARWPCSHLWR*
Ga0073909_1005460923300005526Surface SoilMRRLLIGLTVTLLVVVSIGVGVAVARWPHPHLWP*
Ga0070734_1005243233300005533Surface SoilMRRVLIGLTVTLLLVVSIGLGVAVARWPCHHFWR*
Ga0070731_1005935133300005538Surface SoilMRRVLIGLTVTLLLVVSIGLGVAVARWPCRHFWR*
Ga0066697_1065114823300005540SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPCSHLWR*
Ga0070733_10001097103300005541Surface SoilMMRSMRRVLIGLMLTLLLVVSVSIGVVVARWPLYPHLWP*
Ga0070733_1002096643300005541Surface SoilMRRLLIGLALTLLLVVSIGVGVTVARWPQPHLWP*
Ga0066670_1048851523300005560SoilMRRVLIGLTVALLLVVSIGVGVVVARWPYSHLWR*
Ga0066693_1002357523300005566SoilMRRVLIGLTVTLLLVLSIGVGVVVARWPCSHLWR*
Ga0066703_1043838323300005568SoilMSGYDALMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHLWR*
Ga0070761_10000216343300005591SoilMRSMRRVLIGLTLTLLLLLSVSVGVVVARWPLYPHLWP*
Ga0070761_1000181053300005591SoilMRRLLIGLTLTLLLIVSIGVGVAVARWPYPHLWP*
Ga0070761_1001554753300005591SoilMRRLLIGLTVTLLLVVSIGVGVAVARWPLARLWPP*
Ga0070763_1000410833300005610SoilMRRLMIGITVTLLVVVSIGVGVAVARWPQPHLWP*
Ga0068856_10001318753300005614Corn RhizosphereMRRLLIGLTVTLLLVISIGVGVAVALWPHPHLWR*
Ga0066903_10058048523300005764Tropical Forest SoilMRRVLIGFTVTLLVVVSIGVGVAVARWPHPHLWP*
Ga0066903_10592501413300005764Tropical Forest SoilMRRVLIGLTVTLLVVVSIGVGVAVARWPRPHLWP*
Ga0070766_1026177813300005921SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCSHLWR*
Ga0070766_1026702123300005921SoilMRSMRRVLIGLMLTLLLLVSVSIGVVVARWPLYPHLWP*
Ga0066656_1027287523300006034SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHLWR*
Ga0070716_10104941223300006173Corn, Switchgrass And Miscanthus RhizosphereMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPYPHPWR*
Ga0070765_10117375623300006176SoilMRRVALGLTVTVLVLVSIGVGVAVARWPHPFMLP*
Ga0068871_10100373913300006358Miscanthus RhizosphereAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHPHLWP*
Ga0079221_1067972423300006804Agricultural SoilMPVMRRLLIGLTVTLLLVISIGIGVAVALWPHPHLWR*
Ga0075433_1044279923300006852Populus RhizosphereMRRLLIGLTVALLVIVSIGIGVVIALWPHPHLSR*
Ga0099793_1006331333300007258Vadose Zone SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHPWR*
Ga0099829_1089941113300009038Vadose Zone SoilMSGYDAAMRRVLIGLTVTFLLVVSIGVGVVVARWPCPHPWR*
Ga0105240_1046081223300009093Corn RhizosphereMRRFLIGLTVTLIVIVSIGVGVAVALLARWGHALFRG*
Ga0099792_10000094123300009143Vadose Zone SoilMRRVLIGLTVTLLVVVSIGVGVVVARWPCSHLWR*
Ga0123355_1003100673300009826Termite GutVAVILREQLSGYDEAMRRLLIGLTVTLLVVVSIGVGVAIARWPHPHLWP*
Ga0123355_1066599623300009826Termite GutGGYDERMRRVLIGLTVTLLVVVSIGVGVAIARWPHLWP*
Ga0126380_1064471023300010043Tropical Forest SoilMRRLLIGLTVTLLVVVSIGVGVAIARWPHSPFWR*
Ga0126373_1253731623300010048Tropical Forest SoilMRRVLIGLTVTLLVVVSIGVGVAVARWPHSHLWP*
Ga0134084_1011240323300010322Grasslands SoilMSGYDAAMRRVLIGLTVALLLVVSIGVGVVVARWPCSHL*
Ga0126376_1039465823300010359Tropical Forest SoilVRRLLIIVTLVLLLAVSIGVGVAVARWPHFWPRHT*
Ga0126378_1163732223300010361Tropical Forest SoilMRRVLIGLTVTLLVVVSIGVGVAVARWPHTHLWP*
Ga0126378_1233250013300010361Tropical Forest SoilMRRVLIGLTVTLLVVVSIGVGVAIARWTHPHLWP*
Ga0126378_1299123923300010361Tropical Forest SoilMMLAMRRLLIGLTVTLLVVVSSGVGVAIARWPHTRLWP*
Ga0126381_10071812423300010376Tropical Forest SoilLSAGWQVYDAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHSHLWP*
Ga0126381_10111326323300010376Tropical Forest SoilMMPAMRRLLIGLTVTLLVVVSIGVGVAIARWPHTRLWP*
Ga0136449_10195231623300010379Peatlands SoilMQRLLIGLTVTLLVVVSICVGVLVARWPHVHLWP*
Ga0126383_1012780833300010398Tropical Forest SoilMRSGYDAFMRRLLIGLTVALLLLVSIGVGLAVVRWPCPHRWL*
Ga0134121_1003910723300010401Terrestrial SoilMMRRLLIGLTVTLLLVISIGVGVAVALWPHPHLWR*
Ga0137363_1002935323300012202Vadose Zone SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPYPWR*
Ga0137399_1004402743300012203Vadose Zone SoilMMSGYDGQMRRVLIGLTVTLLLVVSIGVGVAVARWPCPHLWR*
Ga0137399_1019933023300012203Vadose Zone SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPSSHLWR*
Ga0137377_1004469453300012211Vadose Zone SoilSRARGGYDAPMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHLWR*
Ga0137360_1023237823300012361Vadose Zone SoilMRRVLIGLTVTVLLVVSIGVGVVVARWPCSHLWR*
Ga0137358_1091433913300012582Vadose Zone SoilAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHPWR*
Ga0137395_1005830833300012917Vadose Zone SoilRYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCSYLWR*
Ga0137413_1010522923300012924Vadose Zone SoilMRRVLIGLAVTLLVVVSIGVGVVVARWPCSHLWR*
Ga0137419_1157926123300012925Vadose Zone SoilMRRVLIGLTVALLLVVSIGVGVAVARWPWPHLWR*
Ga0137416_1069283023300012927Vadose Zone SoilMRRVLIGLTVTLLLVVSIGVGVVVARWPCPYPWR*
Ga0126369_1245409513300012971Tropical Forest SoilMRRVLIGLTVTLLVVVSIGVGVAVARWPHPHLWP*
Ga0126369_1271049423300012971Tropical Forest SoilMRSGYDGFMRRLLIGLAVALLLLVSIGVGVAVARWPCPHRWL*
Ga0182015_10000987133300014495PalsaMRRVLIGLTLTLLLVVSVGVGVVVARWPLYPHLWP*
Ga0182024_1174270423300014501PermafrostMRRVLIGLTLALLLVLSVGVGVVVARWPLYPRLWP*
Ga0137411_113716123300015052Vadose Zone SoilMSGYDAAMRRVLIGLTVTLLLVLSIGVGVVVARWPCPHPWR*
Ga0167668_105391823300015193Glacier Forefield SoilMRRLLIGLTVTLLLVVSICVGVAVARWPQHPHLWP*
Ga0132258_10019359123300015371Arabidopsis RhizosphereMRRVLIGLTVTLLVIVSIGIGVVVALWPHPYLWR*
Ga0182034_1014116433300016371SoilSGYDAAMRRLLIGLTVTLLVVVSIAVGVAVARWQHPHLWP
Ga0187820_103422623300017924Freshwater SedimentMRRLLIGLTVTLLVVVSIGVGVAVARWPYPHLWPWGTPPKF
Ga0187824_1000655723300017927Freshwater SedimentMRRLLIGLTLTLLLVVSIGVGVAVARWPQHPFLWR
Ga0187824_1007237023300017927Freshwater SedimentMRRLLIGLTLTLLLLVSIGVGVAVARWPQHPYLWR
Ga0187809_1028058523300017937Freshwater SedimentMRRLLIGLTVTLLVVVSIGVGVAVARWPYPHLWPWGTP
Ga0187779_1123308513300017959Tropical PeatlandMMAAMRRLLIGLTLALLLVVSIGLGVAVARWHYPHLWP
Ga0187778_1009596233300017961Tropical PeatlandMMSAMRRLLIGVTVALLLVVSIGVGVAVARWRYPHLWP
Ga0187778_1010388023300017961Tropical PeatlandMRRVLIGLTVAVLLLLSIGIGVVVARWPQHPHLWP
Ga0187783_1001139063300017970Tropical PeatlandMRRVLIGLTVVLLLAVSIGVGVAVARWPCRHLWRWPV
Ga0187783_1058086923300017970Tropical PeatlandPDTGGYDVGMRRLLIGLTVTLLVVVSIVVGVAVARWPHPHLWR
Ga0187781_1045632423300017972Tropical PeatlandMMLAMRRLLIGLTVVLLLVVSIGVGVAVARWHLPHVWP
Ga0187780_1127752113300017973Tropical PeatlandGGCQGYDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPHAHLWR
Ga0187777_1014717713300017974Tropical PeatlandGRVMMSAMRRLLIGVTVALLLVVSIGVGVAVARWRYPHLWP
Ga0187777_1128542923300017974Tropical PeatlandCAGCQVMMAAMRRLLIGLTLALLLVVSIGLGVAVARWHYPHLWP
Ga0187823_1005143523300017993Freshwater SedimentMRRLLIGLTLTVLLLVSIGVGVAVARWPQHPYLWR
Ga0187766_1027538123300018058Tropical PeatlandMSAMRRLLIGVTVALLLVVSIGVGVAVARWRYPHLWP
Ga0187784_1119245813300018062Tropical PeatlandFGRGRSGYDRPMRRVLIGLTVMLLLVVSIGVGVAVARWPYRHLWP
Ga0187772_1086694023300018085Tropical PeatlandMMPAMRRLLIGLTVALLLIASIAVGVAVARWHLARLWP
Ga0066655_1000934343300018431Grasslands SoilLSGYDVTMQRLLISIAVTLLLVVSIAVGVAVARWPHLWR
Ga0066667_1008426123300018433Grasslands SoilMSGYDAAMRRVLIGLTVTLLLVLSIGVGVVVARWPCSHLWR
Ga0066662_1001803623300018468Grasslands SoilLSGYDVRMQRLLISIAVTLLLVVSIAVGVAVARWPHLWR
Ga0066669_1125306523300018482Grasslands SoilMSGYDAAMRRVLIGLTVALLLVVSIGVGVVVARWPYSHLWR
Ga0179594_1010794523300020170Vadose Zone SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHPWR
Ga0210407_1026573023300020579SoilMSGYDAAMRRVLIGLTVALLLVVSIGVGVAVARWSCPHLWR
Ga0210407_1048470023300020579SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPLPWR
Ga0210399_1001778053300020581SoilMMRSMRRVLIGLMLTLLLVVSVSIGVVVARWPRYPHLWP
Ga0210399_1048147123300020581SoilMMPGMRRVLIGLTVALLLVLSVSIGVVVARWPLYPHLWP
Ga0210404_1047832713300021088SoilDLVMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHPWR
Ga0210405_1086682523300021171SoilLVARRSSGYDVVMRRLLIGLTVTLLTVVSITVGVAIARWPHPHLWH
Ga0213873_1006115123300021358RhizosphereMMAPMRRVLIGLTVALLLVVSIGLGVAVARWHYPHLWP
Ga0213873_1012256823300021358RhizosphereMWVGCWSGYDPAMRRVLIGLTVILLLVISIGVGVVIARWPDRHFWH
Ga0210385_1000102823300021402SoilMRRLLIGLTVTLLLVVSIGVGVAVARWPLARLWPP
Ga0210397_1131669223300021403SoilSSGYDAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Ga0210383_1035732623300021407SoilMMRGMRRVLIGLVLTLLLVVSVSIGVAVARWPRYPHLWP
Ga0210394_1006135433300021420SoilMMRSMRRVLIGLMLTLLLLVSVSIGVVVARWPLYPHLWP
Ga0210384_1000804963300021432SoilMMPGMRRVLIGLTVAVLLVLSVSIGVVVARWPLYPHLWP
Ga0210384_1005292123300021432SoilMMPGMRRVLIGLTVAMLLVLSVSIGVVVARWPLYPHLWP
Ga0213878_1017126513300021444Bulk SoilMAPMRRVLIGLTVALLLVISIGLGVAVARWHYPHLWP
Ga0210390_1064414923300021474SoilMRSMRRVLIGLMLTLLLLVSVSIGVVVARWPLYPHLWP
Ga0210409_1003789453300021559SoilMRRLLIGLTVALLLVVSIGVGVAVARWPQHALRWH
Ga0126371_1115701223300021560Tropical Forest SoilLSAGWQVYDAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHSHLWP
Ga0209470_108923223300026324SoilMSGYDALMRRVLIGLTVALLLVVSIGVGVVVARWPCPHLWR
Ga0209806_115006823300026529SoilMSGYDALMRRVLIGLTVTLLLVVSIGVGVVVARWPCPHLWR
Ga0208997_100594123300027181Forest SoilMSGYDATMRRVLIGLTVALLLVVSIGVGVAVARWPCPHPWR
Ga0208993_100501913300027480Forest SoilMSGYDATMRRVLIGLTVALLLVVSIGVGVAVARWPCPHLWR
Ga0209524_100029643300027521Forest SoilMSGYDAAMRRVLIGLTVALLLLVSIGVGVVVARWPCPHLWR
Ga0209733_100269353300027591Forest SoilMSGYDAAMRRVLIGLTVTVLLVVSIGVGVAVARWPCPHLWR
Ga0209733_110147323300027591Forest SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPCPYPWR
Ga0208988_111713123300027633Forest SoilMSGYDAAMRRVLIGLTVALLLVVSIGVGVVVARWPCPHLWR
Ga0209625_100065433300027635Forest SoilMSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPFPLPWR
Ga0209328_1015963813300027727Forest SoilMRRLLIGLTVTLLLVVSICVGVAVARWPQHPHLWP
Ga0209274_1000368533300027853SoilMRSMRRVLIGLTLTLLLLLSVSVGVVVARWPLYPHLWP
Ga0209167_1000241663300027867Surface SoilMMRSMRRVLIGLMLTLLLVVSVSIGVVVARWPLYPHLWP
Ga0209579_1006288913300027869Surface SoilPVSYYVAMRRLLIGLTLTLLLVASIGVGVLVARWPSLWP
Ga0209380_1043809923300027889SoilMRRVLIGLMLTLLLLVSVSIGVVVARWPLYPHLWP
Ga0318534_1067064623300031544SoilMRGVLIGLTLTLLLAASVGIGIVVARWPLYPHLWP
Ga0318528_1025235313300031561SoilGYDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPHPHLWP
Ga0318573_1002437813300031564SoilRSGYDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPHPHLWP
Ga0307476_1139011323300031715Hardwood Forest SoilMRGVLIGLTLTLLVAVSVGVGIVVARWPLYPHLWP
Ga0307469_1089784113300031720Hardwood Forest SoilVSGYDVRVQRLLISIAVTLLLVVSIAVGVAVARWPH
Ga0318493_1058416313300031723SoilYDAAMRGFLLGLTLTLLLLVSVGVGIVVARWPLYPHLWP
Ga0318500_1052834813300031724SoilGYDSAMRRVLIGLTVALLVVVSIGVGVAVARWRHPHLWP
Ga0318501_1034045923300031736SoilVLSGSGQGYDLSMRRLLIGLTVTLLVLVSVGVGVAVARWPHAHLWR
Ga0307468_10001922523300031740Hardwood Forest SoilMRRLLIGLTVTLLLVVSIGVGVAVARWPQHPHLWP
Ga0318502_1039625013300031747SoilDAAMRRVLIGLTVALLVVVSIGVGVAVARWPHPHLWP
Ga0318494_1053718823300031751SoilGRWRSGYDAAMRRLLIGLTVTLVVVVSIGVGVAIARWPHPHLWP
Ga0318526_1009403513300031769SoilYDAVMRRVLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Ga0318557_1024162523300031795SoilYDAAMRRVLIGLTVTLLVAVSIGVGVAVARWPHPHLWP
Ga0306922_1051754913300032001SoilLTGYDAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Ga0318569_1023704823300032010SoilDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPHPHLWP
Ga0318513_1024382923300032065SoilSAMRRVWIGLTVTLLLVVSIGVGVAVARWTHPHLWP
Ga0318524_1053840513300032067SoilQLSGYDAAMRRVLIGLTVALLVVVSIGVGVAVARWPHPHLWP
Ga0318553_1034568313300032068SoilYDAAMRRVLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Ga0307471_10310920313300032180Hardwood Forest SoilSGYDAAMRRVLIGLTVTLLLVVSIGVGVVVARWPYPHPWR
Ga0307472_10138476213300032205Hardwood Forest SoilSGYDAAMRRLLIGLTVTLLVVVSIGVGVAVARWPHPHLWP
Ga0335079_1001771083300032783SoilLRGGYQGYDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPYAHLWR
Ga0335077_1061160413300033158SoilPEILRGGYQGYDAAMRRLLIGLTVTLLVVVSIGVGVAIARWPYAHLWR
Ga0310914_1089397123300033289SoilDAAMRRVLIGLTVTLLVVVSIGVGVAVARWPHPHLWP


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