Metagenome / Metatranscriptome Family F051403

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F051403
Family Type	Metagenome / Metatranscriptome
Number of Sequences	144
Average Sequence Length	39 residues
Representative Sequence	MLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Number of Associated Samples	111
Number of Associated Scaffolds	144

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.08 %
% of genes near scaffold ends (potentially truncated)	17.36 %
% of genes from short scaffolds (< 2000 bps)	85.42 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.111 % of family members)
Environment Ontology (ENVO)	Unclassified (28.472 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.861 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 144 Family Scaffolds
PF01230	HIT	25.00
PF03640	Lipoprotein_15	5.56
PF01544	CorA	4.17
PF00274	Glycolytic	4.17
PF14329	DUF4386	1.39
PF09851	SHOCT	1.39
PF03793	PASTA	1.39
PF00188	CAP	0.69
PF05746	DALR_1	0.69
PF13396	PLDc_N	0.69
PF13360	PQQ_2	0.69
PF03448	MgtE_N	0.69
PF01566	Nramp	0.69
PF00528	BPD_transp_1	0.69
PF11987	IF-2	0.69
PF00082	Peptidase_S8	0.69
PF08044	DUF1707	0.69
PF07883	Cupin_2	0.69
PF07690	MFS_1	0.69
PF10031	DUF2273	0.69
PF02894	GFO_IDH_MocA_C	0.69
PF13378	MR_MLE_C	0.69
PF00849	PseudoU_synth_2	0.69

COG ID	Name	Functional Category	% Frequency in 144 Family Scaffolds
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	5.56
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	4.17
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	4.17
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.69
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	0.69
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.69
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	0.69
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	0.69
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.69
COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	Inorganic ion transport and metabolism [P]	0.69
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.72 %
Unclassified	root	N/A	20.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.47 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.64 %
Unclassified	root	N/A	20.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.08 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.53 %
Unclassified	root	N/A	20.83 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.08 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.69 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	19.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.08 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.69 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.69 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.08 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.69 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.69 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.08 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.69 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.69 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig16901	All Organisms → cellular organisms → Bacteria → Terrabacteria group	777	Open in IMG/M
2170459019\|G14TP7Y01C178X	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690	Open in IMG/M
2170459021\|G14TP7Y02JS374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
2170459022\|GZEQPF101ANBDH	Not Available	525	Open in IMG/M
2199352024\|deeps_contig36658.23277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1924	Open in IMG/M
3300001686\|C688J18823_10056795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2712	Open in IMG/M
3300001686\|C688J18823_10107885	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300005181\|Ga0066678_11089390	Not Available	514	Open in IMG/M
3300005332\|Ga0066388_101639884	Not Available	1134	Open in IMG/M
3300005435\|Ga0070714_100078283	All Organisms → cellular organisms → Bacteria	2873	Open in IMG/M
3300005456\|Ga0070678_100045206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3149	Open in IMG/M
3300005538\|Ga0070731_10306812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1054	Open in IMG/M
3300005540\|Ga0066697_10187292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1229	Open in IMG/M
3300005553\|Ga0066695_10620981	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005563\|Ga0068855_102028207	All Organisms → cellular organisms → Bacteria → Terrabacteria group	581	Open in IMG/M
3300005564\|Ga0070664_100260980	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300005574\|Ga0066694_10206478	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005578\|Ga0068854_100141103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1849	Open in IMG/M
3300005598\|Ga0066706_11509127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300005614\|Ga0068856_100184907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2097	Open in IMG/M
3300005764\|Ga0066903_100009339	All Organisms → cellular organisms → Bacteria	9205	Open in IMG/M
3300005764\|Ga0066903_100116143	All Organisms → cellular organisms → Bacteria	3696	Open in IMG/M
3300005764\|Ga0066903_101092547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1469	Open in IMG/M
3300005764\|Ga0066903_101924465	Not Available	1133	Open in IMG/M
3300005764\|Ga0066903_103753106	Not Available	817	Open in IMG/M
3300005764\|Ga0066903_104571874	Not Available	737	Open in IMG/M
3300005764\|Ga0066903_108006960	Not Available	542	Open in IMG/M
3300005764\|Ga0066903_108968861	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300005893\|Ga0075278_1038545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M
3300005899\|Ga0075271_10100908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300006028\|Ga0070717_10020668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5181	Open in IMG/M
3300006028\|Ga0070717_10232243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1624	Open in IMG/M
3300006028\|Ga0070717_10492944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300006028\|Ga0070717_11046085	Not Available	743	Open in IMG/M
3300006028\|Ga0070717_11420244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300006032\|Ga0066696_10098531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1752	Open in IMG/M
3300006058\|Ga0075432_10519972	Not Available	533	Open in IMG/M
3300006059\|Ga0075017_100053535	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2719	Open in IMG/M
3300006173\|Ga0070716_100617377	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006173\|Ga0070716_100622625	All Organisms → cellular organisms → Bacteria → Terrabacteria group	815	Open in IMG/M
3300006173\|Ga0070716_100651675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	798	Open in IMG/M
3300006576\|Ga0074047_10101302	Not Available	509	Open in IMG/M
3300006578\|Ga0074059_11413552	Not Available	683	Open in IMG/M
3300006578\|Ga0074059_11776702	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1196	Open in IMG/M
3300006580\|Ga0074049_12992896	All Organisms → cellular organisms → Bacteria → Terrabacteria group	569	Open in IMG/M
3300006804\|Ga0079221_10217378	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1060	Open in IMG/M
3300006806\|Ga0079220_10085173	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300006806\|Ga0079220_10579045	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300006806\|Ga0079220_11902009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300009098\|Ga0105245_10355737	Not Available	1452	Open in IMG/M
3300009137\|Ga0066709_102468026	All Organisms → cellular organisms → Bacteria → Terrabacteria group	703	Open in IMG/M
3300009174\|Ga0105241_10805273	All Organisms → cellular organisms → Bacteria → Terrabacteria group	866	Open in IMG/M
3300009792\|Ga0126374_11373004	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300010048\|Ga0126373_11153490	Not Available	841	Open in IMG/M
3300010154\|Ga0127503_10005032	Not Available	577	Open in IMG/M
3300010154\|Ga0127503_10883418	All Organisms → cellular organisms → Bacteria	2603	Open in IMG/M
3300010154\|Ga0127503_11115328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1723	Open in IMG/M
3300010320\|Ga0134109_10392951	Not Available	553	Open in IMG/M
3300010333\|Ga0134080_10082752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1302	Open in IMG/M
3300010335\|Ga0134063_10157270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1057	Open in IMG/M
3300010335\|Ga0134063_10541082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300010358\|Ga0126370_11133117	All Organisms → cellular organisms → Bacteria → Terrabacteria group	723	Open in IMG/M
3300010358\|Ga0126370_11750308	Not Available	600	Open in IMG/M
3300010360\|Ga0126372_10154501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1840	Open in IMG/M
3300010362\|Ga0126377_12091514	Not Available	642	Open in IMG/M
3300010373\|Ga0134128_12776168	All Organisms → cellular organisms → Bacteria → Terrabacteria group	540	Open in IMG/M
3300010376\|Ga0126381_100656585	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1497	Open in IMG/M
3300010376\|Ga0126381_100987163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1215	Open in IMG/M
3300010398\|Ga0126383_13419601	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300011106\|Ga0151489_1620555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300012199\|Ga0137383_11188503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300012211\|Ga0137377_10112442	All Organisms → cellular organisms → Bacteria	2588	Open in IMG/M
3300012349\|Ga0137387_10311255	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300012914\|Ga0157297_10238116	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652	Open in IMG/M
3300012915\|Ga0157302_10332958	All Organisms → cellular organisms → Bacteria → Terrabacteria group	602	Open in IMG/M
3300012951\|Ga0164300_10169389	Not Available	1042	Open in IMG/M
3300012955\|Ga0164298_10728024	All Organisms → cellular organisms → Bacteria → Terrabacteria group	700	Open in IMG/M
3300012957\|Ga0164303_10336171	All Organisms → cellular organisms → Bacteria → Terrabacteria group	906	Open in IMG/M
3300012958\|Ga0164299_11570355	Not Available	517	Open in IMG/M
3300012960\|Ga0164301_10626128	All Organisms → cellular organisms → Bacteria → Terrabacteria group	798	Open in IMG/M
3300012977\|Ga0134087_10109164	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1167	Open in IMG/M
3300012977\|Ga0134087_10340526	Not Available	714	Open in IMG/M
3300012984\|Ga0164309_10723942	All Organisms → cellular organisms → Bacteria → Terrabacteria group	792	Open in IMG/M
3300012986\|Ga0164304_10842621	All Organisms → cellular organisms → Bacteria → Terrabacteria group	712	Open in IMG/M
3300012989\|Ga0164305_10565778	All Organisms → cellular organisms → Bacteria → Terrabacteria group	907	Open in IMG/M
3300013105\|Ga0157369_10400997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1423	Open in IMG/M
3300015358\|Ga0134089_10164834	All Organisms → cellular organisms → Bacteria → Terrabacteria group	880	Open in IMG/M
3300015371\|Ga0132258_12580876	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1270	Open in IMG/M
3300015373\|Ga0132257_100857813	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1136	Open in IMG/M
3300017947\|Ga0187785_10070892	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300017959\|Ga0187779_10039459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2738	Open in IMG/M
3300018032\|Ga0187788_10549908	Not Available	505	Open in IMG/M
3300018433\|Ga0066667_10299107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1250	Open in IMG/M
3300018468\|Ga0066662_10494093	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300018482\|Ga0066669_11634252	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
3300019362\|Ga0173479_10867672	Not Available	507	Open in IMG/M
3300020069\|Ga0197907_11405396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	909	Open in IMG/M
3300020070\|Ga0206356_11297712	Not Available	503	Open in IMG/M
3300020080\|Ga0206350_10010368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1183	Open in IMG/M
3300021478\|Ga0210402_11831544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300021560\|Ga0126371_11641844	Not Available	768	Open in IMG/M
3300022467\|Ga0224712_10193940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	921	Open in IMG/M
3300022467\|Ga0224712_10387914	All Organisms → cellular organisms → Bacteria → Terrabacteria group	664	Open in IMG/M
3300024055\|Ga0247794_10065704	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1024	Open in IMG/M
3300024347\|Ga0179591_1193728	Not Available	2878	Open in IMG/M
3300025910\|Ga0207684_10854814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	767	Open in IMG/M
3300025922\|Ga0207646_10000502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52324	Open in IMG/M
3300025927\|Ga0207687_11212318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300025929\|Ga0207664_10007435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7595	Open in IMG/M
3300025929\|Ga0207664_10607413	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300025929\|Ga0207664_12011576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300026034\|Ga0208773_1033203	All Organisms → cellular organisms → Bacteria → Terrabacteria group	666	Open in IMG/M
3300026078\|Ga0207702_11133269	All Organisms → cellular organisms → Bacteria → Terrabacteria group	776	Open in IMG/M
3300026109\|Ga0208774_1070129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300027765\|Ga0209073_10128276	All Organisms → cellular organisms → Bacteria → Terrabacteria group	920	Open in IMG/M
3300027869\|Ga0209579_10133396	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300027907\|Ga0207428_10349343	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1088	Open in IMG/M
3300031057\|Ga0170834_101618642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	635	Open in IMG/M
3300031199\|Ga0307495_10059499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	808	Open in IMG/M
3300031226\|Ga0307497_10394056	All Organisms → cellular organisms → Bacteria → Terrabacteria group	660	Open in IMG/M
3300031226\|Ga0307497_10409513	Not Available	650	Open in IMG/M
3300031543\|Ga0318516_10418524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300031544\|Ga0318534_10011090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4530	Open in IMG/M
3300031572\|Ga0318515_10427687	All Organisms → cellular organisms → Bacteria → Terrabacteria group	708	Open in IMG/M
3300031858\|Ga0310892_11130056	Not Available	556	Open in IMG/M
3300031938\|Ga0308175_100069914	All Organisms → cellular organisms → Bacteria	3122	Open in IMG/M
3300031938\|Ga0308175_100200561	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300031939\|Ga0308174_10084330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2242	Open in IMG/M
3300031939\|Ga0308174_10787253	All Organisms → cellular organisms → Bacteria → Terrabacteria group	798	Open in IMG/M
3300032001\|Ga0306922_12080138	All Organisms → cellular organisms → Bacteria → Terrabacteria group	551	Open in IMG/M
3300032076\|Ga0306924_12222713	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300032180\|Ga0307471_101553951	Not Available	819	Open in IMG/M
3300032261\|Ga0306920_100513930	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300032261\|Ga0306920_103766795	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300032770\|Ga0335085_10024188	All Organisms → cellular organisms → Bacteria	8576	Open in IMG/M
3300032770\|Ga0335085_10501120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1386	Open in IMG/M
3300032770\|Ga0335085_12227696	Not Available	550	Open in IMG/M
3300032783\|Ga0335079_10116042	All Organisms → cellular organisms → Bacteria	3025	Open in IMG/M
3300032893\|Ga0335069_10042250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6065	Open in IMG/M
3300032893\|Ga0335069_10850750	Not Available	1023	Open in IMG/M
3300032955\|Ga0335076_10113725	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300033004\|Ga0335084_10222499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1959	Open in IMG/M
3300033412\|Ga0310810_11313094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300033475\|Ga0310811_11259000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.89%
Host-Associated	Host-Associated	9.72%
Engineered	Engineered	1.39%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.11%
Plants	Host-Associated → Plants	9.72%
Aquatic	Environmental → Aquatic	2.78%
Solid Waste	Engineered → Solid Waste	1.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.86%
Freshwater	Environmental → Aquatic → Freshwater	2.08%
Grass	Engineered → Solid Waste → Grass	1.39%
Sediment	Environmental → Aquatic → Sediment	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.33%
Loam	Environmental → Terrestrial → Soil → Loam	17.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.39%
Composting	Engineered → Solid Waste → Grass → Composting	1.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.69%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.08%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.39%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.78%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.08%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.08%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.39%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.39%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.39%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.69%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.69%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005893	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202	Environmental	Open in IMG/M
3300005899	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026034	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302 (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026109	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00060570	2166559006	Grass Soil	MLVDVVAVLVLVLMAADVFRMLFVDTEPERDPVRRADRPERGG
4MG_04176280	2170459019	Switchgrass, Maize And Mischanthus Litter	MLVEVVAVLVLVLMGADVFRMLFLDTEPRRDPVRRNAPSG
4NP_00292140	2170459021	Switchgrass, Maize And Mischanthus Litter	MLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
FA2_05226680	2170459022	Grass Soil	MSVEVVAVLVLVLMAADVFRMVFIDTEPQREPVRRNDS
deeps_03948650	2199352024	Soil	MLVDVVAVLVMVLMAGDVVRMLFVDSEPHGDPVRRNDS
C688J18823_100567952	3300001686	Soil	MLVDVVAALVLVLMAADVFRMLFVDTETQRDPVRRNNS*
C688J18823_101078853	3300001686	Soil	MAVDVVAVLVLVLMAADAFRMLFVDTEPQRDPVRRNDP*
Ga0066678_110893902	3300005181	Soil	MDMLVEVVAVLVLVLMTADVLRMLFADSEPQRDPVRRRDS*
Ga0066388_1016398841	3300005332	Tropical Forest Soil	YDESMLVQVVAVIVLVLMAADILRMLFADTEPQRDPVRRRNS*
Ga0070714_1000782833	3300005435	Agricultural Soil	MHMLVDVVAVLVLVLMAADVFRMLLIDTEPHRDPARRDDS*
Ga0070678_1000452061	3300005456	Miscanthus Rhizosphere	VAVDVVAALVLVLMAADVFRMLFVDTELQRDPVRRNDPSG*
Ga0070731_103068122	3300005538	Surface Soil	VIVDVVAVLVLVLMGADVVRMLFVDPEPRHDPARRQDS*
Ga0066697_101872923	3300005540	Soil	MAVEVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDP*
Ga0066695_106209812	3300005553	Soil	MAVDLVAVLVLVLMAMDVFRMLFVDTEPQRDPVRRNDP*
Ga0068855_1020282072	3300005563	Corn Rhizosphere	VAVDVVAALVLVLMAADVFRMLFVDTELQRDPVRRNDS*
Ga0070664_1002609804	3300005564	Corn Rhizosphere	MLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS*
Ga0066694_102064782	3300005574	Soil	MAVDLVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDP*
Ga0068854_1001411033	3300005578	Corn Rhizosphere	MLVDVVAVLVLALMAADVFRMLFVDTEPRRDPDRPNGS*
Ga0066706_115091271	3300005598	Soil	VVAVLVLVLMAMDVFRMLFVDTEPQRDPVRRNDP*
Ga0068856_1001849075	3300005614	Corn Rhizosphere	MLVEVVAVLVLVLMGADVFRMVFLDTEPRRDPVRRNDP*
Ga0066903_1000093393	3300005764	Tropical Forest Soil	MLVQVVAVLVLVLMTADILRMLFADTEPQRDPVRRRDT*
Ga0066903_1001161436	3300005764	Tropical Forest Soil	MLVQVVAVLVLVLMAADILRMLFADTEPQRDPVRRRDS*
Ga0066903_1010925472	3300005764	Tropical Forest Soil	MAVDVVAVLVLVLMAADTFRMLFVDTEPQRDPARRRDA*
Ga0066903_1019244653	3300005764	Tropical Forest Soil	MAVAVVAVLVLVLMAADTFRMLFIDTEPQRDPVRRRDS*
Ga0066903_1037531062	3300005764	Tropical Forest Soil	VLVDVVAVLVLVLMAADVFRMLYLDDEPQRDPVRRDDS*
Ga0066903_1045718742	3300005764	Tropical Forest Soil	MAVDVVAVLVLVLMAADTFRMLFIDTEPQRDPVRRRDS*
Ga0066903_1080069602	3300005764	Tropical Forest Soil	MAVDVVAVLVLVLMAADVFRMLFIDTEPQHDPVRRRDS*
Ga0066903_1089688612	3300005764	Tropical Forest Soil	MLVQVVAVIVLVLMAADILRMLFAEAEPERNPVRRRDS*
Ga0075278_10385452	3300005893	Rice Paddy Soil	MAVDVVAVLVLLLMLGDVIRMLFDDAEPHRDPARRNGS*
Ga0075271_101009081	3300005899	Rice Paddy Soil	VLVDVVAALVMLLMLGDVIRMLFVDPEPQRDPVRGNDS*
Ga0070717_100206684	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVDVVAVLVLVLMAADVFRMLFVDTEPPGDPARRRDS*
Ga0070717_102322431	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVEVVAVLVLVLMAADVFRMVFLDTDPQRDPVRRNDR*
Ga0070717_104929441	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVEVVAVLVLVLMGADVFRMLFLDTEPQRDPVRRNDP*
Ga0070717_110460852	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHMLVDVVAVLVLVLMAADVFRMLFIDTEPQRDPARRDDS*
Ga0070717_114202441	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVDVVAALVLVLMAADVFRMLFIDTEPQRVETRRDPVRRGDS*
Ga0066696_100985314	3300006032	Soil	MAVEVVAVLVLVLMAMDVFRMLFVDTEPQRDPVRRNDP*
Ga0075432_105199721	3300006058	Populus Rhizosphere	VAVYVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS*
Ga0075017_1000535355	3300006059	Watersheds	VLVDVVAVLVLVLMVADVFRMLFVDSGPQHDPVCRDDS*
Ga0070716_1006173772	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLVDVVAALVLVLMAADVFRMLFVDTEPQRAPARRDDA*
Ga0070716_1006226252	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VAVDVVAVLVLVLMAADVFRMLFVDTELQRDPVRRNDS*
Ga0070716_1006516751	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DGAQGYDTAMLVDVVAVLVLVLMAADVFRMLFIDTEPQRDPARRDDS*
Ga0074047_101013021	3300006576	Soil	DVVAVLVLVLMAADVFRMLFIDTEPQRDPARRDDS*
Ga0074059_114135522	3300006578	Soil	MVEVVAVLVLVLMAADVLRMLFADAEPQRDPVRRRDS*
Ga0074059_117767022	3300006578	Soil	MLVDVVAVVVMLLMLGDVIRMLFVDTEPEPQRDPVRRNDFQ*
Ga0074049_129928961	3300006580	Soil	MYMLVDVVAVLVLVLMAADVFRMLFIDTEPQRDPARRDDS*
Ga0079221_102173782	3300006804	Agricultural Soil	MLVDAVAVLVLVLMAADVFRMLFVDTEPERNPARRGDS*
Ga0079220_100851733	3300006806	Agricultural Soil	MLVNAVAVLVLVLMAADVFRMLFVDTEPERNPARRNDS*
Ga0079220_105790453	3300006806	Agricultural Soil	MAVDVVAVLVLVLMAADTFRMLFIDTEPQRDPARR
Ga0079220_119020091	3300006806	Agricultural Soil	MAVDVVAVLVLVLMAADTFRMLFIDTEPQRDPARRRDS*
Ga0105245_103557374	3300009098	Miscanthus Rhizosphere	RARGYDENVAVYVVAVLVLVLMAADVFRMLFVDTEPQHGPVRRNDS*
Ga0066709_1024680261	3300009137	Grasslands Soil	MAVDVVAALVLLLMAADVFRMLFVDTEPQREPVRRRDS*
Ga0105241_108052732	3300009174	Corn Rhizosphere	MLVDVVAVLVLVLMAADVFRMLFVDTEPQHGPVRRNDS*
Ga0126374_113730041	3300009792	Tropical Forest Soil	MLVQVVAVIVLVLMAADILRMLFADAEPQRNPVRRRDS*
Ga0126373_111534901	3300010048	Tropical Forest Soil	MLVDVVAVLVLVLMAADVFRMLFIDTEPQRDRAHRDNT*
Ga0127503_100050322	3300010154	Soil	EHMLVDVVAVLVLLLMAADVFRMLFVDTEPQRDPVRRDDF*
Ga0127503_108834182	3300010154	Soil	MLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRADRPERGG*
Ga0127503_111153284	3300010154	Soil	MLVDVVAVLVLLLMGADVFRMLFIDTEPQRDPVRRDDF*
Ga0134109_103929512	3300010320	Grasslands Soil	MAVDLVAVLVLVLMAADVFRMLFVDTEPQRDPVRRND
Ga0134080_100827523	3300010333	Grasslands Soil	MAVEVVAVLVLVLMAADVLRMLFVDTEPQRDPVRRNDP*
Ga0134063_101572702	3300010335	Grasslands Soil	MLVDVVAVLVLVLMAADAFRMLFVDTEPQRDRVRRNNS*
Ga0134063_105410822	3300010335	Grasslands Soil	YDENMAVEVVAVLVLVLMAMDVFRMLFVDTEPQRDPVRRNDP*
Ga0126370_111331172	3300010358	Tropical Forest Soil	MLVQVVAVLVLVLMAADILRMLFADTEPQRDPVRRRNS*
Ga0126370_117503081	3300010358	Tropical Forest Soil	VTVELVAVLVLVLMAADILRMLFADDEPQRNPVRRRDS*
Ga0126372_101545013	3300010360	Tropical Forest Soil	MLVQVVAVIVLVLMAADILRMLFADTEPQRDPVRRRNS*
Ga0126377_120915141	3300010362	Tropical Forest Soil	MLVDVVAVLVLVLMTADILRMLFADEEPQRHSVRRRDS*
Ga0134128_127761682	3300010373	Terrestrial Soil	MVVDVVAALVLLLMAGDVLRMVFVDPEPRRDPVRRNDS*
Ga0126381_1006565851	3300010376	Tropical Forest Soil	MLVDIVAVLVLVLMAADVFRMLYLDDEPQRDPVRRDDS*
Ga0126381_1009871633	3300010376	Tropical Forest Soil	LRGYDKHMLVDVVAVLVLVLMAADVFRMLFIDTEPPRDPARRDHS*
Ga0126383_134196012	3300010398	Tropical Forest Soil	MAVDVVAVLVLVLMAADTFRMLFIDTEAQRDPVRRRDS*
Ga0151489_16205552	3300011106	Soil	MLVDVVAVLVLLLMLGDVIRMLFVDTEPEPQREPVRRNDSQ*
Ga0137383_111885032	3300012199	Vadose Zone Soil	MLVDVVAVLVMLLMLGDVIRMLFVDTEPQRNPVRRSDSQ*
Ga0137377_101124424	3300012211	Vadose Zone Soil	MLVDVVAVLVMLLMLGDVIRMLFVDTEPQRAPVRRSDSQ*
Ga0137387_103112553	3300012349	Vadose Zone Soil	MLVDVVAVLVMLLMLGDVIRMLFVDTEPQRDPVRRNDS*
Ga0157297_102381162	3300012914	Soil	VAVDVVAALVLVLMAADVFRMLFIDTEPQRDPVRRNDP*
Ga0157302_103329582	3300012915	Soil	VAVDVVAALVLVLMAADVFRMLFVDTEQQRDPVRRNDS*
Ga0164300_101693892	3300012951	Soil	VAVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS*
Ga0164298_107280242	3300012955	Soil	MLVEVVAVLVMLLMLGDVIRMLFVDTEPQRDPVRRTDR*
Ga0164303_103361713	3300012957	Soil	VAVDVVAVLVLVLMAADVFRMVVLDTEPRRDLARRDDS*
Ga0164299_115703552	3300012958	Soil	VVVDVVAALVLVLMAADVFRMLFVDTEPQRGAVRRNDY*
Ga0164301_106261282	3300012960	Soil	MLVEVVAVLVMLLMLGDVIRMLCVDTEPQRDPVRRTDR*
Ga0134087_101091641	3300012977	Grasslands Soil	MAVDLVAVLVLVLMAMDVFRMLFVDTEPQRDPVRR
Ga0134087_103405261	3300012977	Grasslands Soil	MAVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRRDS*
Ga0164309_107239421	3300012984	Soil	MAVDVVASLVLLLMAADMFRMLFIDTELQRDPVRRHDSRL*
Ga0164304_108426211	3300012986	Soil	VAVDVVAVLVLVLMAADVFRMLFVDTEPQRGAVRRNDY*
Ga0164305_105657782	3300012989	Soil	MLVDVVAALVLGLMAADVFRMLFVDTEPQRAPARRDDA*
Ga0157369_104009973	3300013105	Corn Rhizosphere	MLVEVVAVLVLVLMGADVFRMLFLDTEPRRDPVRRNDP*
Ga0134089_101648342	3300015358	Grasslands Soil	MAVEVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNNS*
Ga0132258_125808763	3300015371	Arabidopsis Rhizosphere	VAVDVVAVLVLVLMAADVFRMLFIDTEPQRDPVRRNDS*
Ga0132257_1008578132	3300015373	Arabidopsis Rhizosphere	VAVDVVAVLVLVLMAADVFRMLFVDTEPERDPVRRNDS*
Ga0187785_100708921	3300017947	Tropical Peatland	MLVQVVAVLVLVLMGADVLRMLFADPEPRRDPVRRRDS
Ga0187779_100394592	3300017959	Tropical Peatland	MLVDVVAVVVLLLMAGDVFRMLFIDTEPQRDRVRRNDDS
Ga0187788_105499082	3300018032	Tropical Peatland	MLVQVVAVVVLVLMGADVLRMLFADPEPQRDPVRRRDS
Ga0066667_102991071	3300018433	Grasslands Soil	MLVDVVAVLVLVLMAADAFRMLFVDTEPQRDPVRRNNS
Ga0066662_104940933	3300018468	Grasslands Soil	MAVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDP
Ga0066669_116342522	3300018482	Grasslands Soil	MAVEVVAVLVLVLMAMDVFRMLFVDTEPQRDPVRRNDP
Ga0173479_108676721	3300019362	Soil	VAVDVVAALVLVLMAADVFRMLFIDTELQRDPVRRNDS
Ga0197907_114053963	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VDVVAALVLLLMAGDVLRMVFVDPEPRRDPVRRNDS
Ga0206356_112977121	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VSVDVGAALVLVLMAADVFRMLFVDTELQRDPVRRNDS
Ga0206350_100103683	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	DVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0210402_118315442	3300021478	Soil	MLVDVVAVVVMLLMLGDVIRMLFVDTEPEPQRDPVRRNDFQ
Ga0126371_116418442	3300021560	Tropical Forest Soil	MLVDVVAVLVLVLMAADVFRMLFIDTEPQRDPARRDHS
Ga0224712_101939401	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MLVEVVAVLVLVLMGADVFRMLFLDTEPRRDPVRRNDP
Ga0224712_103879142	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VAVDVVAALVLVLMAADVFRMLFVDTELQRDPVRRNDS
Ga0247794_100657043	3300024055	Soil	MTRNVAVDVVAVLVLVLMAADAFRMLLVDTEPRRDPARR
Ga0179591_11937284	3300024347	Vadose Zone Soil	MAVDLVAALVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0207684_108548141	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VAVDVVAALVLVLMAADVFRMLFVDTEPQRDPVRRN
Ga0207646_1000050212	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLVQVVAVLVLVLMLADIFRMLFADPEPQRAPVRRRDS
Ga0207687_112123181	3300025927	Miscanthus Rhizosphere	TMLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0207664_100074351	3300025929	Agricultural Soil	MLVEVVAVLVLVLMAADVFRMVFLDTDPQRDPVRRHDR
Ga0207664_106074132	3300025929	Agricultural Soil	MHMLVDVVAVLVLVLMAADVFRMLLIDTEPHRDPARRDDS
Ga0207664_120115761	3300025929	Agricultural Soil	VEVVAVLVLVLMGADVFRMLFLDTEPQRDPVRRNDP
Ga0208773_10332032	3300026034	Rice Paddy Soil	MAVDVVAVLVLLLMLGDVIRMLFDDAEPHRDPARRNGS
Ga0207702_111332693	3300026078	Corn Rhizosphere	MLVEVVAVLVLVLMGADVFRMLFLDTEPRRDPVRR
Ga0208774_10701291	3300026109	Rice Paddy Soil	VTVAVVAVLVMLLMLGDVIRMLFDDAEPHRDPARRNGS
Ga0209073_101282762	3300027765	Agricultural Soil	MLVNAVAVLVLVLMAADVFRMLFVDTEPERNPARRGDS
Ga0209579_101333962	3300027869	Surface Soil	VIVDVVAVLVLVLMGADVVRMLFVDPEPRHDPARRQDS
Ga0207428_103493432	3300027907	Populus Rhizosphere	VAVYVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0170834_1016186422	3300031057	Forest Soil	MLVDVVAVLVLLLMAADTFRMLFVDTEPHRGPARRDDS
Ga0307495_100594992	3300031199	Soil	VVVEVVAVLVLVLMAADVFRMLFIDTEPQRNPVRRNDS
Ga0307497_103940561	3300031226	Soil	MVVEVVAVLVLVLMAADVFRMLFIDTEPQRNPVRRNDS
Ga0307497_104095133	3300031226	Soil	VDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0318516_104185243	3300031543	Soil	YSTMLVDVVAVLVLVLMAADVFRMLFIDTEPQREPARRDDSRR
Ga0318534_100110903	3300031544	Soil	MLVDVVAVLVLVLMAADVFRMLFIDTEPQREPARRDDSRR
Ga0318515_104276871	3300031572	Soil	MLVDVVAVLVLVLMAADVFRMLFIDTEPQREPARRDDSR
Ga0310892_111300563	3300031858	Soil	VAVDVVAVLVLVLMAADVFRMLFIDTEPQRDPVRRNDS
Ga0308175_1000699146	3300031938	Soil	MLVDVVAALVLVLMAGDVLRMLFVDPEPHGDPVRRNDS
Ga0308175_1002005612	3300031938	Soil	MAVDVVAVLVLVLMAADIFRMLFVDTELQRDPVRRRNDS
Ga0308174_100843304	3300031939	Soil	MAVDLVAVLVLVLMAADVYRMLFVDTEPPRDAVRRDGS
Ga0308174_107872532	3300031939	Soil	VKVLVDVVAVLVLVLMAGDVYRMLFVDTEPQHETARRGDS
Ga0306922_120801382	3300032001	Soil	MLVDVVAVLVLVLMGADVFRMLFIDTEPQREPARRDDSRR
Ga0306924_122227132	3300032076	Soil	MLVDVVAVLVLVLMGADVFRMLFIDTEPQRTSARRDDSRR
Ga0307471_1015539511	3300032180	Hardwood Forest Soil	MLVDVVAVLVLLLMAGDVFRMLFIDTEPQHEHARRNDS
Ga0306920_1005139304	3300032261	Soil	MLVDVVAVLVLVLMAADMFRMLFIDTEPQREPARRDDSRR
Ga0306920_1037667952	3300032261	Soil	MLVEVVAVLVLVLMGADVLRMLFADAEPQRNPVRRRDSSR
Ga0335085_100241882	3300032770	Soil	MLVDVVAVLVLLLMGADIFRMLFVDTEPHRNPVRRDDS
Ga0335085_105011202	3300032770	Soil	MLVDVVAVLVLLLMAGDVFRMLFVDTEPQRNPVRRND
Ga0335085_122276961	3300032770	Soil	VLVDVVAVLVLVLMGADVFRMLFIDTEPPRYAARRRDS
Ga0335079_101160423	3300032783	Soil	VLVDLVAVLVLVLLAADVFRMLFVDTEPRRDPVRRHDS
Ga0335069_100422503	3300032893	Soil	MLVDLVAVLVLLLMAGDVFRMLFVDTEPQRNPVRRND
Ga0335069_108507502	3300032893	Soil	VLVDVVAVLVLVLMAADVFRMLFVDDEPHRSSVRRDDS
Ga0335076_101137251	3300032955	Soil	VLVDLVAVLVLVLLAADVFRMLFVDTEPRHDPVRRHDS
Ga0335084_102224992	3300033004	Soil	MLVDVVAAFVLVLMAADVFRMLFVDTEPQRAPARRDDT
Ga0310810_113130941	3300033412	Soil	YDKTMLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS
Ga0310811_112590002	3300033475	Soil	GYDETMLVDVVAVLVLVLMAADVFRMLFVDTEPQRDPVRRNDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F051403

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences