NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F051780

Metagenome / Metatranscriptome Family F051780

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F051780
Family Type Metagenome / Metatranscriptome
Number of Sequences 143
Average Sequence Length 40 residues
Representative Sequence MILTFSSQIESADGERRIIAGKIVPYEEVGNTSVGKV
Number of Associated Samples 111
Number of Associated Scaffolds 143

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 59.70 %
% of genes near scaffold ends (potentially truncated) 93.01 %
% of genes from short scaffolds (< 2000 bps) 85.31 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Duplodnaviria (66.434 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(41.259 % of family members)
Environment Ontology (ENVO) Unclassified
(72.727 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(76.224 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 15.38%    Coil/Unstructured: 84.62%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 143 Family Scaffolds
PF04860Phage_portal 86.71
PF03237Terminase_6N 3.50
PF03354TerL_ATPase 0.70

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 143 Family Scaffolds
COG4626Phage terminase-like protein, large subunit, contains N-terminal HTH domainMobilome: prophages, transposons [X] 0.70


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.92 %
UnclassifiedrootN/A16.08 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002091|JGI24028J26656_1011235All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300002408|B570J29032_108786272Not Available509Open in IMG/M
3300002408|B570J29032_109276357All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage667Open in IMG/M
3300003277|JGI25908J49247_10052183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1066Open in IMG/M
3300003393|JGI25909J50240_1018904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1601Open in IMG/M
3300003394|JGI25907J50239_1115294All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage522Open in IMG/M
3300003411|JGI25911J50253_10130636All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage736Open in IMG/M
3300003431|JGI25913J50563_1064657All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage555Open in IMG/M
3300003616|JGI25928J51866_1056671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales920Open in IMG/M
3300005517|Ga0070374_10596349All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage548Open in IMG/M
3300005527|Ga0068876_10224226Not Available1084Open in IMG/M
3300005580|Ga0049083_10256296All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage588Open in IMG/M
3300005582|Ga0049080_10205787All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage649Open in IMG/M
3300005805|Ga0079957_1242250All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage842Open in IMG/M
3300006805|Ga0075464_10769447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage598Open in IMG/M
3300006805|Ga0075464_11062976Not Available509Open in IMG/M
3300006920|Ga0070748_1303447All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage567Open in IMG/M
3300007363|Ga0075458_10267094All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage520Open in IMG/M
3300007861|Ga0105736_1170939All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage506Open in IMG/M
3300008114|Ga0114347_1227460All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage594Open in IMG/M
3300008120|Ga0114355_1196873All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage654Open in IMG/M
3300008122|Ga0114359_1109190All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage979Open in IMG/M
3300008265|Ga0114361_1089302All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage956Open in IMG/M
3300008266|Ga0114363_1110399All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage974Open in IMG/M
3300008339|Ga0114878_1024369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales2793Open in IMG/M
3300009026|Ga0102829_1195456All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage656Open in IMG/M
3300009026|Ga0102829_1254870All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage577Open in IMG/M
3300009152|Ga0114980_10321250All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage896Open in IMG/M
3300009164|Ga0114975_10755764All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage511Open in IMG/M
3300009183|Ga0114974_10596940All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage609Open in IMG/M
3300009187|Ga0114972_10397687All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage795Open in IMG/M
3300010885|Ga0133913_11149853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1995Open in IMG/M
3300012006|Ga0119955_1123459All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage705Open in IMG/M
3300012013|Ga0153805_1082979All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium544Open in IMG/M
3300013005|Ga0164292_10815542All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage589Open in IMG/M
3300013010|Ga0129327_10245639All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage914Open in IMG/M
(restricted) 3300013131|Ga0172373_10584454All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage670Open in IMG/M
3300017701|Ga0181364_1050700All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage651Open in IMG/M
3300017707|Ga0181363_1090700Not Available518Open in IMG/M
3300017722|Ga0181347_1153287All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage628Open in IMG/M
3300017722|Ga0181347_1170186All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage586Open in IMG/M
3300017723|Ga0181362_1008897All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2154Open in IMG/M
3300017723|Ga0181362_1061034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage774Open in IMG/M
3300017736|Ga0181365_1072476All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage848Open in IMG/M
3300017736|Ga0181365_1072559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria848Open in IMG/M
3300017736|Ga0181365_1120596All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage629Open in IMG/M
3300017736|Ga0181365_1162126All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage527Open in IMG/M
3300017736|Ga0181365_1162283All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage526Open in IMG/M
3300017736|Ga0181365_1165894All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage519Open in IMG/M
3300017747|Ga0181352_1080763All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage909Open in IMG/M
3300017766|Ga0181343_1148195All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage655Open in IMG/M
3300017777|Ga0181357_1275718All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage578Open in IMG/M
3300017778|Ga0181349_1289105All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage534Open in IMG/M
3300017780|Ga0181346_1158261All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage843Open in IMG/M
3300017780|Ga0181346_1325016All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium516Open in IMG/M
3300017784|Ga0181348_1293457All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage547Open in IMG/M
3300017785|Ga0181355_1213295All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage754Open in IMG/M
3300017785|Ga0181355_1275522All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage639Open in IMG/M
3300019784|Ga0181359_1069796Not Available1333Open in IMG/M
3300019784|Ga0181359_1116495All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage961Open in IMG/M
3300019784|Ga0181359_1145567All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage819Open in IMG/M
3300019784|Ga0181359_1239436All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage558Open in IMG/M
3300020048|Ga0207193_1448887Not Available856Open in IMG/M
3300020084|Ga0194110_10307382Not Available1117Open in IMG/M
3300020151|Ga0211736_10016960All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage511Open in IMG/M
3300020172|Ga0211729_10539262Not Available1280Open in IMG/M
3300020172|Ga0211729_11080815Not Available1024Open in IMG/M
3300020204|Ga0194116_10278686All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage894Open in IMG/M
3300020542|Ga0208857_1021353All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1070Open in IMG/M
3300020553|Ga0208855_1016390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae1134Open in IMG/M
3300021952|Ga0213921_1005653All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2523Open in IMG/M
3300021952|Ga0213921_1057983All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage557Open in IMG/M
3300021962|Ga0222713_10286427Not Available1056Open in IMG/M
3300021963|Ga0222712_10645522All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage605Open in IMG/M
3300022072|Ga0196889_1025579All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae1213Open in IMG/M
3300022179|Ga0181353_1074507All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage863Open in IMG/M
3300022179|Ga0181353_1159236All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage515Open in IMG/M
3300022407|Ga0181351_1153566All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage824Open in IMG/M
3300022407|Ga0181351_1170386All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage761Open in IMG/M
3300022407|Ga0181351_1219578All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage618Open in IMG/M
3300022407|Ga0181351_1261777All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage531Open in IMG/M
3300023174|Ga0214921_10253553All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1029Open in IMG/M
3300023184|Ga0214919_10083585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2803Open in IMG/M
3300024346|Ga0244775_11511205All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage513Open in IMG/M
3300024481|Ga0256330_1139973All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium511Open in IMG/M
3300025647|Ga0208160_1081783All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage864Open in IMG/M
3300025896|Ga0208916_10017851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2791Open in IMG/M
3300027127|Ga0255071_1043596All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage656Open in IMG/M
3300027290|Ga0255136_1068541All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage522Open in IMG/M
3300027518|Ga0208787_1097726All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage715Open in IMG/M
3300027563|Ga0209552_1141514All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage623Open in IMG/M
3300027608|Ga0208974_1096629All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria792Open in IMG/M
3300027621|Ga0208951_1017887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2276Open in IMG/M
3300027659|Ga0208975_1035157All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1584Open in IMG/M
3300027688|Ga0209553_1119930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria926Open in IMG/M
3300027688|Ga0209553_1177507All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage706Open in IMG/M
3300027689|Ga0209551_1115480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria859Open in IMG/M
3300027689|Ga0209551_1249073All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage533Open in IMG/M
3300027721|Ga0209492_1047110All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1518Open in IMG/M
3300027733|Ga0209297_1203383All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage784Open in IMG/M
3300027736|Ga0209190_1032217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2801Open in IMG/M
3300027736|Ga0209190_1160376All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage964Open in IMG/M
3300027754|Ga0209596_1181175All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage913Open in IMG/M
3300027756|Ga0209444_10187567All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage760Open in IMG/M
3300027763|Ga0209088_10129463Not Available1132Open in IMG/M
3300027764|Ga0209134_10027716All Organisms → Viruses → Predicted Viral1824Open in IMG/M
3300027772|Ga0209768_10385670All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage561Open in IMG/M
3300027777|Ga0209829_10433157All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage502Open in IMG/M
3300027782|Ga0209500_10138518Not Available1159Open in IMG/M
3300027785|Ga0209246_10127781Not Available998Open in IMG/M
3300027793|Ga0209972_10036072All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2813Open in IMG/M
3300027798|Ga0209353_10192203All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage897Open in IMG/M
3300027808|Ga0209354_10042647All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1823Open in IMG/M
3300027808|Ga0209354_10167003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria896Open in IMG/M
3300027808|Ga0209354_10296962All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage643Open in IMG/M
3300027816|Ga0209990_10032383All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2795Open in IMG/M
3300027896|Ga0209777_10110746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae2323Open in IMG/M
3300027969|Ga0209191_1331893All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium554Open in IMG/M
3300028108|Ga0256305_1175825All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage508Open in IMG/M
3300028394|Ga0304730_1270420All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage602Open in IMG/M
3300031758|Ga0315907_10432041Not Available1055Open in IMG/M
3300031758|Ga0315907_10654104All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage807Open in IMG/M
3300031787|Ga0315900_10954795All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage569Open in IMG/M
3300031951|Ga0315904_10049978All Organisms → cellular organisms → Bacteria4673Open in IMG/M
3300032046|Ga0315289_11366567All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage553Open in IMG/M
3300032173|Ga0315268_10963880All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage858Open in IMG/M
3300033981|Ga0334982_0114559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae1406Open in IMG/M
3300033993|Ga0334994_0039303All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3016Open in IMG/M
3300034018|Ga0334985_0308217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage988Open in IMG/M
3300034062|Ga0334995_0354093All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage938Open in IMG/M
3300034104|Ga0335031_0615978All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage638Open in IMG/M
3300034117|Ga0335033_0468415All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage609Open in IMG/M
3300034168|Ga0335061_0095070All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae1589Open in IMG/M
3300034283|Ga0335007_0453902All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage784Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake41.26%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake11.19%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.39%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.59%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic3.50%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton3.50%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater2.10%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.10%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.10%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.40%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater1.40%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.40%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.70%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.70%
LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic0.70%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.70%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.70%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.70%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.70%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.70%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.70%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.70%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface0.70%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002091Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenomeEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003411Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SDEnvironmentalOpen in IMG/M
3300003431Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300003616Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DNEnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007636Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3EnvironmentalOpen in IMG/M
3300007861Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3umEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300008122Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTREnvironmentalOpen in IMG/M
3300008265Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTREnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008339Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 all contigsEnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009187Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020204Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surfaceEnvironmentalOpen in IMG/M
3300020542Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020553Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021952Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MGEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300025896Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027127Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8hEnvironmentalOpen in IMG/M
3300027290Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8dEnvironmentalOpen in IMG/M
3300027518Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027563Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027621Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027688Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027689Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027749Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027777Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028108Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034117Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124EnvironmentalOpen in IMG/M
3300034168Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24028J26656_101123523300002091LenticMQLTFSSQMITAADGERRIIAGQIVPFGAVGNTSAG
B570J29032_10878627213300002408FreshwaterMKLTFSSQVEAADTERRVIAGKIVPFEEVGNTSVGK
B570J29032_10927635713300002408FreshwaterMLLTFSSQIESADGERRVIAGKIVPFESVGRTSVGPVVFAKGSIDVG
JGI25908J49247_1005218313300003277Freshwater LakeMGGFKLILTFSSAVESADTERRIIAGKIVPYESVGNTSAGPV
JGI25909J50240_101890423300003393Freshwater LakeMLLTFSSAVESADTERRIIAGKIVPYEAVGNTSAGPVMFAKIL*
JGI25907J50239_111529413300003394Freshwater LakeMLLTFNSQIESADGERRVIAGKIVPFEVPGNTSVGKVVFAKGS
JGI25911J50253_1013063623300003411Freshwater LakeMRTIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTSVGKVVF
JGI25913J50563_106465713300003431Freshwater LakeMGGFKLILTFSSQIESADGERRIIAGKIVPFETVGNTSVGKVV
JGI25928J51866_105667113300003616Freshwater LakeLILTFSSAVESADTERRIIAGKIVPYEAIGNTSAGPVMFAKD
Ga0070374_1059634933300005517Freshwater LakeMGRFKLILTFSSAVESADTERRIIAGKIVPYEAIGNTS
Ga0068876_1022422623300005527Freshwater LakeMKLTFSSHVEAADTERRVIAGKIVPFEEVGNTSVGKVVF
Ga0049083_1025629633300005580Freshwater LenticMGGFKLILTFSSAVESADTERRIIAGKIVPYESVGNTSAGPVMFAKDSI
Ga0049080_1020578713300005582Freshwater LenticMRAIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTS
Ga0079957_124225023300005805LakeMRTLMLLTFSSQIESADGERRVIAGKIVPFEVPGNTSVGKVV
Ga0075464_1076944713300006805AqueousMRVTMLLTFSSSIESSDTERRVIAGKIVPYERVGFTSAGPVVFAKD
Ga0075464_1106297613300006805AqueousMKLTFSSPIEAADTERRVIAGKIVPFEEVGNTSVG
Ga0070748_130344713300006920AqueousMETQMLLTFSSHIESADGERRIIAGKIVPYEEVGNTSVGKVV
Ga0075458_1026709423300007363AqueousMGGFKLILTFSSQIESSDNERRVIAGKIVPFETPGNTSVGKVVFAK
Ga0102856_102831713300007636EstuarineVKLTFSSAIEAADTERRIIAGVVVPFGEIGNTSVGP
Ga0105736_117093923300007861Estuary WaterMLLTFSSAVESADTERRIIAGKIVPYEAVGNTSAGPVMFAKDSID
Ga0114347_122746023300008114Freshwater, PlanktonMILTFSSQVEAADGERRVIAGKIVPYESVGHTSVGPVVF
Ga0114355_119687323300008120Freshwater, PlanktonMKLTFSSHVEAADTERRVIAGKIVPFEEVGNTSVGKV
Ga0114359_110919013300008122Freshwater, PlanktonMKLTFSSQIEAADGERRVIAGKIVPFESVGHTSVGKVVFAKNSIE
Ga0114361_108930223300008265Freshwater, PlanktonMKLTFSSHVEAADTERRVIAGKIVPFEEVGNTSVGKVV
Ga0114363_111039913300008266Freshwater, PlanktonMKLTFSSQIEAADGERRVIAGKIVPFESVGHTSVGKVV
Ga0114878_102436913300008339Freshwater LakeMILTFSSQVEAADTERRVIAGKIVPFEEVGNTSVGK
Ga0102829_119545613300009026EstuarineMFLEFSSSIESSDTERRVIAGKIVPYEKVGFTSAGPVVF
Ga0102829_125487023300009026EstuarineMQLNFNSPIEAADGERRIVSGQIVPFGSVGNTSIGR
Ga0114980_1032125013300009152Freshwater LakeMFLNFSSAIESSDSERRIIAGKIVPYEKVGFTSAGPVVFAKDS
Ga0114975_1075576423300009164Freshwater LakeMGGFKLILTFSSQIESADTERRVIAGKIVPFETPGNTS
Ga0114974_1059694013300009183Freshwater LakeMGGFKLILTFSSQIESADSERRVIAGKIVPFETPGNTS
Ga0114972_1039768733300009187Freshwater LakeMLLTFSSSIESSDTERRVIAGKIVPYEVVGNTSAGPVVFAKDSIAI
Ga0133913_1114985333300010885Freshwater LakeMILTFSSQVEAADGERRVIAGKIVPFESVGHTSVGPV
Ga0119955_112345913300012006FreshwaterMLLTFSSSVEASDSERKIIAGKIVPFGEVGNTSVGK
Ga0153805_108297923300012013Surface IceMQLNFNSSIEATDQERRIIAGKIVPFGEIGNTSVGKV
Ga0164292_1081554213300013005FreshwaterMLLTFSSNLESADTERRIIAGKIVPYESVGSTSAGPVMF
Ga0129327_1024563913300013010Freshwater To Marine Saline GradientMQLNFNSSIEATDQERRIIAGKIVPFGEIGNTSVGKVV
(restricted) Ga0172373_1058445423300013131FreshwaterMLLTFSSAVEAADGERRVIAGKIVPFESVGNTSAGPVMFAK
Ga0181364_105070023300017701Freshwater LakeMLLTFSSNLESADTERRIIAGKIVPYESVGSTSAG
Ga0181363_109070013300017707Freshwater LakeMILTFSSQVEAADGERRVIAGKIVPFESVGHTSVGPT
Ga0181347_115328723300017722Freshwater LakeMRAIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTSV
Ga0181347_117018613300017722Freshwater LakeMLLTFSSAVESADTERRIIAGKIVPYEAVGNTSAGPVMFA
Ga0181362_100889713300017723Freshwater LakeMLLTFSSQIESADGERRIIAGKIVPFETPGNTSVGKVVFAKG
Ga0181362_106103423300017723Freshwater LakeMRAIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTSVGKVVF
Ga0181365_103127413300017736Freshwater LakeMKQPLHLTFNTSVEAADADRRIIAGKIVPFGEIGNTSSGRVV
Ga0181365_107247623300017736Freshwater LakeMRAIMLLTFSSQIESADNERRVIAGKIVPFEEVGNT
Ga0181365_107255933300017736Freshwater LakeMGGFKLILTFSSAVESADTERRIIAGKIVPYESVGNTSA
Ga0181365_108454723300017736Freshwater LakeVQPLHLTFNTTVEAADADRRIIAGKIVPFGEIGNTSSGRVVFERG
Ga0181365_112059613300017736Freshwater LakeMRAIMLLTVSSQIESADNERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0181365_116212613300017736Freshwater LakeMGGFKLILTFNSAVESADTERRIIAGKIVPYEAIGNTSAGPVMFAKD
Ga0181365_116228323300017736Freshwater LakeMGRFKLILTFSSAVESADTERRIIAGKIVPYESVGNT
Ga0181365_116589413300017736Freshwater LakeMGGFKLILTFSSQIESADSERRVIAGKIVPFETPGNTSVGKV
Ga0181352_108076313300017747Freshwater LakeMLLTFSSAVESADTERRIIAGKIVPYETVGNTSAGPVVFAKDSIDI
Ga0181343_114819523300017766Freshwater LakeMILTFSSQIESADGERRIIAGKIVPYEEVGNTSVGKVVFAKD
Ga0181357_109216213300017777Freshwater LakeMETQPLHLTFNTTVEAADADRRIIAGKIVPFGEIGHTSAGQVVFEKG
Ga0181357_127571813300017777Freshwater LakeMGGFKLILTFSSQIESADTERRVIAGKIVPFETPGNTSVGKV
Ga0181349_122465023300017778Freshwater LakeVKQPLHLTFNTSVEAADADRRIIAGKIVPFGEIGNTSSGRVVFE
Ga0181349_128910523300017778Freshwater LakeMLLTFNSQIESADGERRIIAGKIVPFETPGNTSVGKVVFAKG
Ga0181346_115826123300017780Freshwater LakeMQLNFNSTIEATDQERRIIAGKIVPFGEIGNTSVGKVVF
Ga0181346_132501623300017780Freshwater LakeMQLNFNSTIEATDQERRIIAGKIVPFGEIGNTSVGKVVFEA
Ga0181348_129345713300017784Freshwater LakeMGGFKLILTFSSQIESADGERRVIAGKIVPFETVG
Ga0181355_121329523300017785Freshwater LakeMQLNFNSTIEPTDQELRIIAGKMVPFGEIGNTSVGKVVFEAC
Ga0181355_127552213300017785Freshwater LakeMQLNFNSTIEATDQERRIIAGKIVPFGEIGNTSVG
Ga0181359_106979623300019784Freshwater LakeMRVQMLLTFSSSVESADTERRVIAGKIVPYEVVGNTSAGPV
Ga0181359_111649513300019784Freshwater LakeMLLTFSSQIESADGERRIIAGKIVPFETPGNTSVGKVVFANSLP
Ga0181359_114556723300019784Freshwater LakeVKQPLHLTFNTSVEAADADRRIIAGKIVPFGEIGNTS
Ga0181359_123943613300019784Freshwater LakeMLLTFSSNVESADTERRIIAGKIVPYETVGNTSAGPVMFAK
Ga0207193_144888713300020048Freshwater Lake SedimentMILTFSSHIESADNERRVIAGKIVPFEEVGNTSVGKV
Ga0194110_1030738223300020084Freshwater LakeMEMKEQMLLTFNSAVEAADGERRIIAGKIVPFESVGNTS
Ga0211736_1001696013300020151FreshwaterMLLTFSSHIESADGERRVIAGKIVPFEEVGNTSVGKVVFAK
Ga0211729_1053926223300020172FreshwaterMRAAMLLTFSSQIESADGERRVIAGKIVPFETPGN
Ga0211729_1108081513300020172FreshwaterMILTFSSQIESADGERRIIAGKIVPYEEVGNTSVGKV
Ga0194116_1027868623300020204Freshwater LakeMEMKEQMLLTFNSAVEAADGERRIIAGKIVPFESVGNTSVGPVMFAKGS
Ga0208857_102135313300020542FreshwaterMILTFSSQVEASDAERRVIAGKIVPFESVGHTSVGPVVFAKGSIEI
Ga0208855_101639013300020553FreshwaterMGGFKLILTFSSQIESADSERRVIAGKIVPFETPGNTSVGKVV
Ga0213921_100565313300021952FreshwaterMEMRAIMFLNFSSAIESSDSERRIIAGKIVPYEKVGFTSAGPVVF
Ga0213921_105798323300021952FreshwaterMNLTFSCAIEAADTERRIIAGQIVPFGAIGNTNVGKVVFERGSIK
Ga0222713_1028642723300021962Estuarine WaterMRAAMLLTFSSQIESADGERRVIAGKIVPFEVPGNTSVGKVVFAKG
Ga0222712_1064552223300021963Estuarine WaterMLLTFSSSVESADTERRVIAGKIVPYEVVGNTSAGPVVFAKDS
Ga0196889_102557913300022072AqueousMGGFKLILTFSSQIESADSERRVIAGKIVPFETPGNTSVG
Ga0181353_107450713300022179Freshwater LakeMDQANLLTFSGTIEASDSARRVISGKIVPFGEIGQ
Ga0181353_115923613300022179Freshwater LakeMRVAMLLTFNSQIQSADGERRVIAGKIVPFETPGNTSVGKVVFAKGSI
Ga0181354_111949013300022190Freshwater LakeVKLTFSSAIEAADTERRIIAGVVVPFGEIALPFPL
Ga0181351_115356623300022407Freshwater LakeMLLTFSSAVESADTERRIIAGKIVPYESVGSTSAG
Ga0181351_117038613300022407Freshwater LakeMLLTFSSQIESADGERRIIAGKIVPFETPGNTSVGK
Ga0181351_121957813300022407Freshwater LakeMRVKMLLTFSSNLESADTERRIIAGKIVPYETVGSTSAG
Ga0181351_126177713300022407Freshwater LakeMRVAMLLTFNSQIESADGERRIIAGKIVPFEVPGNTSVGKVVFAKGS
Ga0214921_1025355323300023174FreshwaterMFLEFSSAIESSDSERRVIAGKIVPYEKVGFTSAGPVVFAKDSI
Ga0214919_1008358533300023184FreshwaterMEMRVVMLLTFSSSIESSDTERRVISGKIVPYNEVGNTS
Ga0244775_1151120523300024346EstuarineMRVLMLLTFSSQIESADGERRVIAGKIVPFETPGNTS
Ga0256330_113997313300024481FreshwaterMETPMLLQFSSPIESSDSERRIIAGKIVPFGEVGNTSAGAVVF
Ga0208160_108178313300025647AqueousMKLTFSSQIEAADTERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0208644_118125223300025889AqueousMILTFSADIQAADEESRTLAGQIVPFNVPGNTSAGKVVFAEG
Ga0208916_1001785133300025896AqueousMDQANLLTFSGTIEASDSARRVISGKIVPFGEIGQTSAG
Ga0255071_104359623300027127FreshwaterMLLTFSSAIESSDTERRVIAGKIVPYERVGFTSAGPVV
Ga0255136_106854113300027290FreshwaterMRVAMLLTFNSQIESADGERRIIAGKIVPFETPGNT
Ga0208787_109772613300027518Deep SubsurfaceMLLTFSSHIESADNERRVIAGKIVPYEAVGNTSAGPVVF
Ga0209552_114151423300027563Freshwater LakeMRVAMLLTFNSQIQSADGERRVIAGKIVPFETPGNTSVGKVVFA
Ga0208974_109662913300027608Freshwater LenticMGGFKLILTFSSAVESADTERRIIAGKIVPYESVGN
Ga0208951_101788733300027621Freshwater LenticMLLTFSSNLESADTERRIIAGKIVPYESVGSTSAGPVMFA
Ga0208975_103515713300027659Freshwater LenticMLLTFNSQIESADGERRIIAGKIVPFEVPGNTSVGKVVFA
Ga0209553_111993013300027688Freshwater LakeMGGFKLILTFSSAVESADTERRIIAGKIVPYEAIGNTSAGPVMFAKDSI
Ga0209553_117750713300027688Freshwater LakeMRATMLLTFSSQIESADNERRVIAGKIVPFEEVGNTSVGKVVFAK
Ga0209551_111548033300027689Freshwater LakeMGGFKLILTFSSAVESADTERRIIAGKIVPYEAIG
Ga0209551_124907313300027689Freshwater LakeMRTIMLLTFSSQIESADNERRVIAGKIVPFEEVGN
Ga0209492_104711033300027721Freshwater SedimentMKLTFSSHIEAADTERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0209297_120338313300027733Freshwater LakeMRAIMFLEFSSSIESSDTERRVIAGKIVPYEKVGYTS
Ga0209190_103221713300027736Freshwater LakeMEMRVVMLLTFSSSIESSDTERRVIAGKIVPYNEVGNTSVGAV
Ga0209190_116037623300027736Freshwater LakeMRVTMFLEFSSSIESSDTERRVIAGKIVPYEKVGFTSA
Ga0209084_102945033300027749Freshwater LakeMQLTFSSQMITAADGERRIIAGQIVPFGAVGNTSAGKTIFERGSI
Ga0209596_118117513300027754Freshwater LakeMRVQMLLTFSSSVESADTERRVIAGKIVPYEVVGNTSAGPVVFA
Ga0209444_1018756723300027756Freshwater LakeMEMRVAMLLTFNSQIESADGERRIIAGKIVPFETPG
Ga0209088_1012946323300027763Freshwater LakeMETQMLLTFSSHIESADGERRIIAGKIVPYEEVGNTSVGKV
Ga0209134_1002771633300027764Freshwater LakeMKLTFSSQIQSADGERRIIAGKIVPYEEVGNTSAGKV
Ga0209768_1038567013300027772Freshwater LakeMGGFKLILTFSSQIESADTERRVIAGKIVPFETPGN
Ga0209829_1043315713300027777Freshwater LakeMRVVMLLTFSSSIESSDTERRVIAGKIVPYNEVGNTSVG
Ga0209500_1013851823300027782Freshwater LakeMLLTFSSAIESSDTERRVIAGKIVPYEKVGFTSAGPVVFAKD
Ga0209500_1024340713300027782Freshwater LakeMFLEFSSSIESSDTERRVIAGKIVPYERVGFTSAGPVVFAKDSIDIG
Ga0209246_1012778113300027785Freshwater LakeMRTIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTS
Ga0209972_1003607243300027793Freshwater LakeMKLTFSSHVEAADTERRVIAGKIVPFEEVGNTSVGKVVFAK
Ga0209353_1019220313300027798Freshwater LakeMRTIMLLTFSSQIESADNERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0209354_1004264713300027808Freshwater LakeMLLTFNSQIESADGERRIIAGKIVPFETPGNTSVGKVVFAKGS
Ga0209354_1016700313300027808Freshwater LakeMGGFKLILTFSSQIESADGERRVIAGKIVPFETIGNTSVGKVVF
Ga0209354_1029696213300027808Freshwater LakeMLLTFSSAVESADTERRIIAGKIVPYEAVGNTSAGPV
Ga0209990_1003238313300027816Freshwater LakeMLLTFSSHIESADGERRVIAGKIVPFEEVGNTSVGRV
Ga0209777_1011074613300027896Freshwater Lake SedimentMQLTFSSQIEAADGERRIIAGQIVPFGSVGNTSAGRVIFE
Ga0209191_133189313300027969Freshwater LakeMFLEFSSAIESSDSERRIIAGKIVPYEKVGFTSAGPV
Ga0256305_117582513300028108FreshwaterMRAAMLLTFSSQIESADGERRVIAGKIVPFETPGNTSVGKVV
Ga0304730_127042013300028394Freshwater LakeMETQPLHLTFNTTVEAADADRRIIAGKIVPFGEIGN
Ga0315907_1043204113300031758FreshwaterMRTLMLLTFSSQIESADGERRVIAGKIVPFEVPGNT
Ga0315907_1065410413300031758FreshwaterMKLTFSSPIEAADTERRVIAGKIVPFEEVGNTSVGKV
Ga0315900_1095479523300031787FreshwaterMLLTFSSQIESADGERRVIAGKIVPFEVPGNTSAGKVVFAKGSIEVGDP
Ga0315904_1004997873300031951FreshwaterMILTFSSQVEAADTERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0315289_1136656713300032046SedimentMRITMLLTFSSNLESADTERRIIAGKIVPYETVGSTSAGPV
Ga0315268_1096388023300032173SedimentMRITMLLTFSSNLESADTERRIIAGKIVPYETVGST
Ga0334982_0114559_1300_14043300033981FreshwaterMGGFKLILTFSSQIESADSERRVIAGKIVPFETPG
Ga0334994_0039303_2_1423300033993FreshwaterMILTFSSQVEAADGERRIIAGKIVPYESVGHTSVGPVVFAKDSIEIG
Ga0334985_0308217_1_1203300034018FreshwaterMKLTFSSHVEAADTERRVIAGKIVPFEEVGNTSVGKVVFA
Ga0334995_0354093_806_9373300034062FreshwaterMILTFSSQVEAADGERRVIAGKIVPFESVGHTSVGPVVFAKGSI
Ga0335031_0615978_499_6363300034104FreshwaterMGGFKLILTFSSQIESADGERRVIAGKIVPFESVGNTSVGKVVFAK
Ga0335033_0468415_470_6073300034117FreshwaterMKLTFSSQVEAADGERRVIAGKIVPFESVGHTSVGKVVFAKNSIEI
Ga0335061_0095070_2_1213300034168FreshwaterMGGFKLILTFSSQIESADGERRVIAGKIVPFETVGNTSVG
Ga0335007_0453902_3_1073300034283FreshwaterMLLTFSSHIESADGERRVIAGKIVPFEEVGNTSVG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.