Metagenome / Metatranscriptome Family F051852

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F051852
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	52 residues
Representative Sequence	MRSQLEPLQLRDFILVAFWLGVKIVAGLVIGAALFETVGLVVGLITMATGG
Number of Associated Samples	67
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	25.17 %
% of genes from short scaffolds (< 2000 bps)	97.90 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.336 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (37.063 % of family members)
Environment Ontology (ENVO)	Unclassified (48.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.643 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.16% β-sheet: 0.00% Coil/Unstructured: 46.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF00313	CSD	3.50
PF06577	EipA	2.10
PF00072	Response_reg	1.40
PF00805	Pentapeptide	1.40
PF07110	EthD	1.40
PF00239	Resolvase	1.40
PF01925	TauE	0.70
PF08401	ArdcN	0.70
PF05239	PRC	0.70
PF05016	ParE_toxin	0.70
PF09834	DUF2061	0.70
PF01188	Obsolete Pfam Family	0.70
PF09864	MliC	0.70
PF03050	DDE_Tnp_IS66	0.70
PF00486	Trans_reg_C	0.70
PF13518	HTH_28	0.70
PF00180	Iso_dh	0.70
PF09361	Phasin_2	0.70
PF00067	p450	0.70
PF13808	DDE_Tnp_1_assoc	0.70
PF07508	Recombinase	0.70
PF01545	Cation_efflux	0.70
PF00216	Bac_DNA_binding	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.10
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.40
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.40
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.70
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.70
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.70
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.70
COG2124	Cytochrome P450	Defense mechanisms [V]	0.70
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.70
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.70
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
All Organisms	root	All Organisms	35.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
cellular organisms	root	All Organisms → cellular organisms	35.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.87 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.70 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	13.99 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	0.70 %
Amorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae	0.70 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.70 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	8.39 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	4.90 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.70 %
Dictyobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae	0.70 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.70 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	0.70 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Microvirga roseola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga roseola	1.40 %
Microvirga lenta	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lenta	1.40 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.70 %
Acuticoccus sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	0.70 %
Microvirga pudoricolor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	0.70 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.70 %
Methylobacterium oxalidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oxalidis	0.70 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.70 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.70 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.34 %
Microvirga roseola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga roseola	1.40 %
Microvirga lenta	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lenta	1.40 %
Dictyobacter vulcani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter vulcani	0.70 %
Acuticoccus sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	0.70 %
Microvirga pudoricolor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	0.70 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.70 %
Methylobacterium oxalidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oxalidis	0.70 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.70 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.70 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0683541	Not Available	519	Open in IMG/M
3300000955\|JGI1027J12803_107428898	Not Available	512	Open in IMG/M
3300001305\|C688J14111_10009651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2731	Open in IMG/M
3300001305\|C688J14111_10157739	Not Available	698	Open in IMG/M
3300001686\|C688J18823_10087870	Not Available	2157	Open in IMG/M
3300001686\|C688J18823_10513945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	767	Open in IMG/M
3300001686\|C688J18823_10655728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300001686\|C688J18823_10813704	Not Available	593	Open in IMG/M
3300002568\|C688J35102_118796122	Not Available	598	Open in IMG/M
3300002568\|C688J35102_119784169	Not Available	774	Open in IMG/M
3300002568\|C688J35102_120510057	Not Available	1130	Open in IMG/M
3300004081\|Ga0063454_100337115	Not Available	969	Open in IMG/M
3300004081\|Ga0063454_100900070	Not Available	699	Open in IMG/M
3300004081\|Ga0063454_101095600	Not Available	650	Open in IMG/M
3300004081\|Ga0063454_101363144	Not Available	598	Open in IMG/M
3300004081\|Ga0063454_101578392	Not Available	565	Open in IMG/M
3300005093\|Ga0062594_102639510	Not Available	555	Open in IMG/M
3300005093\|Ga0062594_103074802	Not Available	522	Open in IMG/M
3300005329\|Ga0070683_100396649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	1316	Open in IMG/M
3300005331\|Ga0070670_100900232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lenta	802	Open in IMG/M
3300005334\|Ga0068869_101805132	Not Available	547	Open in IMG/M
3300005337\|Ga0070682_101262805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter vulcani	626	Open in IMG/M
3300005338\|Ga0068868_100328454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1305	Open in IMG/M
3300005338\|Ga0068868_101746663	Not Available	587	Open in IMG/M
3300005338\|Ga0068868_101856593	Not Available	570	Open in IMG/M
3300005343\|Ga0070687_101368895	Not Available	528	Open in IMG/M
3300005355\|Ga0070671_101085545	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300005456\|Ga0070678_102081022	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005457\|Ga0070662_100547029	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300005543\|Ga0070672_101913811	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005564\|Ga0070664_101700891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	598	Open in IMG/M
3300005578\|Ga0068854_101180632	Not Available	685	Open in IMG/M
3300005618\|Ga0068864_102563342	Not Available	516	Open in IMG/M
3300005719\|Ga0068861_101883727	Not Available	595	Open in IMG/M
3300005840\|Ga0068870_10638931	Not Available	728	Open in IMG/M
3300005842\|Ga0068858_101571506	Not Available	649	Open in IMG/M
3300006755\|Ga0079222_11670820	Not Available	608	Open in IMG/M
3300007790\|Ga0105679_10347048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	1056	Open in IMG/M
3300009101\|Ga0105247_11205678	Not Available	603	Open in IMG/M
3300009101\|Ga0105247_11321454	Not Available	580	Open in IMG/M
3300009551\|Ga0105238_12493029	Not Available	553	Open in IMG/M
3300009553\|Ga0105249_11986296	Not Available	654	Open in IMG/M
3300009553\|Ga0105249_12038780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	646	Open in IMG/M
3300009789\|Ga0126307_10177069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1709	Open in IMG/M
3300009789\|Ga0126307_10185739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1667	Open in IMG/M
3300009789\|Ga0126307_10578317	Not Available	907	Open in IMG/M
3300009789\|Ga0126307_10642923	Not Available	856	Open in IMG/M
3300009789\|Ga0126307_10835359	Not Available	744	Open in IMG/M
3300009789\|Ga0126307_11298418	Not Available	589	Open in IMG/M
3300009789\|Ga0126307_11310123	Not Available	587	Open in IMG/M
3300009840\|Ga0126313_10237661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1410	Open in IMG/M
3300009840\|Ga0126313_10461756	Not Available	1013	Open in IMG/M
3300009840\|Ga0126313_10531850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oxalidis	943	Open in IMG/M
3300009840\|Ga0126313_10593271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lenta	892	Open in IMG/M
3300009840\|Ga0126313_10712731	Not Available	813	Open in IMG/M
3300009840\|Ga0126313_11676098	Not Available	530	Open in IMG/M
3300010036\|Ga0126305_10068350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2065	Open in IMG/M
3300010036\|Ga0126305_10095436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1777	Open in IMG/M
3300010036\|Ga0126305_10502044	Not Available	809	Open in IMG/M
3300010036\|Ga0126305_10503436	Not Available	808	Open in IMG/M
3300010037\|Ga0126304_10708298	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010037\|Ga0126304_10835168	Not Available	625	Open in IMG/M
3300010037\|Ga0126304_11001213	Not Available	570	Open in IMG/M
3300010038\|Ga0126315_10956030	Not Available	572	Open in IMG/M
3300010038\|Ga0126315_11155236	Not Available	525	Open in IMG/M
3300010039\|Ga0126309_10123948	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300010039\|Ga0126309_10299209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300010039\|Ga0126309_10354225	Not Available	865	Open in IMG/M
3300010039\|Ga0126309_10399079	Not Available	822	Open in IMG/M
3300010039\|Ga0126309_10658892	Not Available	667	Open in IMG/M
3300010039\|Ga0126309_10672134	Not Available	661	Open in IMG/M
3300010039\|Ga0126309_10929304	Not Available	578	Open in IMG/M
3300010040\|Ga0126308_10172489	Not Available	1377	Open in IMG/M
3300010040\|Ga0126308_10719233	Not Available	687	Open in IMG/M
3300010041\|Ga0126312_10260967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1218	Open in IMG/M
3300010041\|Ga0126312_10265775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300010041\|Ga0126312_10480183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	888	Open in IMG/M
3300010041\|Ga0126312_10491835	Not Available	877	Open in IMG/M
3300010041\|Ga0126312_10863592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	658	Open in IMG/M
3300010041\|Ga0126312_11108966	Not Available	581	Open in IMG/M
3300010042\|Ga0126314_10327775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1096	Open in IMG/M
3300010042\|Ga0126314_10560521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	832	Open in IMG/M
3300010042\|Ga0126314_10892375	Not Available	657	Open in IMG/M
3300010042\|Ga0126314_10948322	Not Available	637	Open in IMG/M
3300010044\|Ga0126310_10278525	Not Available	1141	Open in IMG/M
3300010044\|Ga0126310_10329304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1063	Open in IMG/M
3300010044\|Ga0126310_10497876	Not Available	890	Open in IMG/M
3300010044\|Ga0126310_10566228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300010044\|Ga0126310_11146600	Not Available	621	Open in IMG/M
3300010044\|Ga0126310_11433302	Not Available	564	Open in IMG/M
3300010044\|Ga0126310_11587439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	540	Open in IMG/M
3300010044\|Ga0126310_11632777	Not Available	533	Open in IMG/M
3300010045\|Ga0126311_10403189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1053	Open in IMG/M
3300010045\|Ga0126311_10851660	Not Available	738	Open in IMG/M
3300010101\|Ga0127481_1128946	Not Available	505	Open in IMG/M
3300010146\|Ga0126320_1239569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300010166\|Ga0126306_10860158	Not Available	734	Open in IMG/M
3300010166\|Ga0126306_11751028	Not Available	519	Open in IMG/M
3300010371\|Ga0134125_10840851	Not Available	1009	Open in IMG/M
3300010373\|Ga0134128_11884415	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	658	Open in IMG/M
3300010375\|Ga0105239_13630625	Not Available	501	Open in IMG/M
3300010399\|Ga0134127_13329402	Not Available	526	Open in IMG/M
3300010400\|Ga0134122_10355846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1277	Open in IMG/M
3300012212\|Ga0150985_100556649	Not Available	566	Open in IMG/M
3300012212\|Ga0150985_102715242	Not Available	542	Open in IMG/M
3300012212\|Ga0150985_106577560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1294	Open in IMG/M
3300012212\|Ga0150985_108455219	Not Available	837	Open in IMG/M
3300012212\|Ga0150985_111071275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga roseola	1298	Open in IMG/M
3300012212\|Ga0150985_112013619	Not Available	861	Open in IMG/M
3300012212\|Ga0150985_112656434	Not Available	501	Open in IMG/M
3300012212\|Ga0150985_115789738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1343	Open in IMG/M
3300012397\|Ga0134056_1184971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	971	Open in IMG/M
3300012469\|Ga0150984_101346549	Not Available	820	Open in IMG/M
3300012469\|Ga0150984_103223377	Not Available	526	Open in IMG/M
3300012469\|Ga0150984_110446144	Not Available	847	Open in IMG/M
3300012469\|Ga0150984_122699077	Not Available	857	Open in IMG/M
3300013306\|Ga0163162_10519515	Not Available	1320	Open in IMG/M
3300013306\|Ga0163162_10750499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1095	Open in IMG/M
3300013306\|Ga0163162_11867497	Not Available	687	Open in IMG/M
3300013306\|Ga0163162_12229883	Not Available	629	Open in IMG/M
3300013308\|Ga0157375_10541289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1327	Open in IMG/M
3300013308\|Ga0157375_11585066	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300014745\|Ga0157377_11686963	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300014968\|Ga0157379_11018440	Not Available	790	Open in IMG/M
3300014968\|Ga0157379_11196648	Not Available	731	Open in IMG/M
3300014968\|Ga0157379_12093943	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300017792\|Ga0163161_10375334	Not Available	1135	Open in IMG/M
3300017792\|Ga0163161_11825999	Not Available	541	Open in IMG/M
3300018465\|Ga0190269_10669389	Not Available	718	Open in IMG/M
3300018466\|Ga0190268_10122428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1264	Open in IMG/M
3300018466\|Ga0190268_11572802	Not Available	577	Open in IMG/M
3300018875\|Ga0193608_1046329	Not Available	965	Open in IMG/M
3300019377\|Ga0190264_11614366	Not Available	571	Open in IMG/M
3300019767\|Ga0190267_10645803	Not Available	667	Open in IMG/M
3300019767\|Ga0190267_10809670	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300019767\|Ga0190267_11022250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga roseola	583	Open in IMG/M
3300025937\|Ga0207669_11117360	Not Available	666	Open in IMG/M
3300025961\|Ga0207712_11318011	Not Available	645	Open in IMG/M
3300026023\|Ga0207677_10185403	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300026075\|Ga0207708_11081293	Not Available	699	Open in IMG/M
3300028380\|Ga0268265_12213847	Not Available	557	Open in IMG/M
3300028778\|Ga0307288_10394556	Not Available	563	Open in IMG/M
3300032075\|Ga0310890_11671750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.73%
Host-Associated	Host-Associated	34.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.03%
Plants	Host-Associated → Plants	34.27%
Aquatic	Environmental → Aquatic	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.08%
Freshwater	Environmental → Aquatic → Freshwater	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.05%
Loam	Environmental → Terrestrial → Soil → Loam	12.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.59%
Sand	Environmental → Terrestrial → Soil → Sand	1.40%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.40%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.40%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	37.06%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.40%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.40%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010101	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018875	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_06835412	2228664022	Soil	GLALGAPVMRLRYEPLQLRXFVLGAVWLAVKLVAGLVIGAALFETVGVVVGLTNLVMGG
JGI1027J12803_1074288981	3300000955	Soil	SLNGLALGAPVMRLRSEPLQLRGFVLGAVWLAVKLVAGLVIGAALFETVGVVVGLTNLVMGG*
C688J14111_100096513	3300001305	Soil	MRLRPAPLQLRDFALVTVSLAVKIVAGLVIGAALVETVGLVVGLVTMATGP*
C688J14111_101577391	3300001305	Soil	MRSXLEPLQLRDFVLVAFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
C688J18823_100878704	3300001686	Soil	RDFVLVAFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
C688J18823_105139452	3300001686	Soil	MRSQLQPLQFRDFVLVAFWLGVKVVAGLVIGAALFETVGLVVGLITMATGG*
C688J18823_106557282	3300001686	Soil	MRLRYEPLQLRDFVLGAVWLAVKLMAGLVIGAALFETVGVVVGLTNVVMGG*
C688J18823_108137041	3300001686	Soil	MRSQLQPLQFRDFVLVAFWLGVKVVAGLVIGAALFETVGLVV
C688J35102_1187961221	3300002568	Soil	LTPSDEFVALKLLLGAPIMRSRPEPLQLRDFASIAFWLLVKIGVGLVVGATLFETVGLVVGLITRMTGG*
C688J35102_1197841691	3300002568	Soil	MRLRSEPLQLRGFVLVAFWLAVKLVAGLVIGAALFETVGVVVGLTNLVMGG*
C688J35102_1205100573	3300002568	Soil	MRPPLASLQLRDFVSVAFWLAVKMVVGLVIGAALFETVGVGVGLIG
Ga0063454_1003371152	3300004081	Soil	MRLRPEPLQPRDFVLVAFWLAMKIVAGLVIGAALFETVGLAVGLITLATGG*
Ga0063454_1009000701	3300004081	Soil	LNGLALGAPVMRLRSEPLQLRGFVLVAFWLAVKLVAGLVIGAALFETVGVVVGLTNLVMGG*
Ga0063454_1010956002	3300004081	Soil	MRSQLEPLQLRDFILVAFWLGVKIVAGLVIGAALFETVGLVVGLITMATGG*
Ga0063454_1013631441	3300004081	Soil	MRSPPEPLQPREFASVAFWLLIKIAVGFLIGVALFETVGLVVGLVTLMAGG*
Ga0063454_1015783922	3300004081	Soil	WERGMHPRPPRPLQLRDFVLVALWLAVKVGAAFVIGAALFETVGLMVGLINMAAGR*
Ga0062594_1026395101	3300005093	Soil	LRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0062594_1030748022	3300005093	Soil	EPLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0070683_1003966491	3300005329	Corn Rhizosphere	MHPQPEPFPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0070670_1009002321	3300005331	Switchgrass Rhizosphere	MRSPSEPLQLREFVLVAFWLVLKVAAGFVIAAALFETVGLVIGLLTHVMGR*
Ga0068869_1018051321	3300005334	Miscanthus Rhizosphere	LASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0070682_1012628051	3300005337	Corn Rhizosphere	MRPPLASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0068868_1003284541	3300005338	Miscanthus Rhizosphere	LLSSHLWGTPVMRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLIIGLITAEMAG*
Ga0068868_1017466631	3300005338	Miscanthus Rhizosphere	PRWTGALDMHPQPEPLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0068868_1018565931	3300005338	Miscanthus Rhizosphere	AVGSALMRPPLASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0070687_1013688951	3300005343	Switchgrass Rhizosphere	MHPQPEPLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0070671_1010855451	3300005355	Switchgrass Rhizosphere	MRPPLASLQLRDFISVAFLLAVKLVVGLVLGAALVETVGLAVGLI
Ga0070678_1020810222	3300005456	Miscanthus Rhizosphere	MVGVAVMRSPPEPLQLREFASVAFWLLIKIVVGFLIGVALFETVGLVVGVVTLMTGG*
Ga0070662_1005470292	3300005457	Corn Rhizosphere	MRPPFASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0070672_1019138111	3300005543	Miscanthus Rhizosphere	MRPTLASLHLRDFVSVAFWLAVRMAVGLVIGAALFETVGVGVGLIGRVMGG*
Ga0070664_1017008911	3300005564	Corn Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMVVGLVIGAALFETVGLAVGLIGRAMSG*
Ga0068854_1011806321	3300005578	Corn Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMVVGLVIGAALFEIVGLAVGLIGRAMGG*
Ga0068864_1025633421	3300005618	Switchgrass Rhizosphere	PLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0068861_1018837272	3300005719	Switchgrass Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMVAGLVLGAALFETVALAIGLIGRAMGG*
Ga0068870_106389311	3300005840	Miscanthus Rhizosphere	MRSPSEPLQLREFVLVAFWLVLKVAAGFVIGAALFETVGLVIGLLTHVMGR*
Ga0068858_1015715061	3300005842	Switchgrass Rhizosphere	MRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVG
Ga0079222_116708201	3300006755	Agricultural Soil	MRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLIIGLINAGMAG*
Ga0105679_103470482	3300007790	Soil	MRLRAEPLQLRDFILVTFWLAVKLVAGLVIGAALFETLGVVIGLTHLLMGG*
Ga0105247_112056781	3300009101	Switchgrass Rhizosphere	MRLRPEPLQLRDFVLVAFWLAVKIMAGLVIGAALLETVGLVVGLINAVMAG*
Ga0105247_113214541	3300009101	Switchgrass Rhizosphere	MVGVAVMRSPPESLQLREFASVAFWLLVKIVVGFLIGVALFETVGLVVGLVTLMTSG*
Ga0105238_124930291	3300009551	Corn Rhizosphere	MRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLIIGRITAEMAR*
Ga0105249_119862961	3300009553	Switchgrass Rhizosphere	RPPLASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0105249_120387802	3300009553	Switchgrass Rhizosphere	MRLRPEPLQLRDFVLVAFWLAVKIGAAFVIGAALFETVGLIVGLINM
Ga0126307_101770692	3300009789	Serpentine Soil	MRLRPEPLQLRDFVLVAFWLAVKIVASFVIGAALVETVGLIVGLINAVISR*
Ga0126307_101857391	3300009789	Serpentine Soil	MRPRLPQPLQLGDFVLTAFWLAMKIVAGFVIGAALFETVGLAVGLITMAIGG*
Ga0126307_105783172	3300009789	Serpentine Soil	MRPVPGPLQFRDVVLVAFWLGVKIVAGLVIGAALFETVGLVVGLITRATGG*
Ga0126307_106429232	3300009789	Serpentine Soil	MLGAPFMRSRLEPLQLRHLILVAFWLGVKIVAGLVIGAVLFETVGLVVGLITMATGG*
Ga0126307_108353593	3300009789	Serpentine Soil	MHPRPPRPLQLRDFVLVAFWLAVKVAAAFVIGAALFETVGLMVGLINMAAGR*
Ga0126307_112984181	3300009789	Serpentine Soil	MRSRLERLQLRDFASVAFWLGVKIVAGLVIGAALFETVGLVVGLITMATGQ*
Ga0126307_113101232	3300009789	Serpentine Soil	MRLRSEPLQLGNFVPVAFWLAVKLVAGLVIGAALFETRGVVFGLTHLGVGG*
Ga0126313_102376612	3300009840	Serpentine Soil	MRSRLERLQLRDFASVAFWLGVKIVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0126313_104617561	3300009840	Serpentine Soil	MRLRSEPLQLRDFVLVAFWLAVKLVAGLVIGAALFETLGVIVGLTKLVLGG*
Ga0126313_105318502	3300009840	Serpentine Soil	MRPVPGPLQFRDFVLVAFWLGVKIVAGLVIGAALFETVGLVVGLITRATGG*
Ga0126313_105932712	3300009840	Serpentine Soil	MRSPSEPLQLREFVLVAFWLALKVAAGFVIGAALFETVGLVIGLLTLVMGR*
Ga0126313_107127312	3300009840	Serpentine Soil	MRLRSEPFPLRGFVLVAFWLAVKLMVGLVIGAALFETLGVLVGLTHLVMGG*
Ga0126313_116760981	3300009840	Serpentine Soil	MRPRLTRPLQLGDFVLTAFWLAVKIVAGFVIGAALFET
Ga0126305_100683501	3300010036	Serpentine Soil	MRSRLERLQLRDFASVVFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0126305_100954363	3300010036	Serpentine Soil	RLRSEPLQLRDFVLVAFWLAVKLVAGLVIGAALFETLGVIVGLTKLVMSG*
Ga0126305_105020442	3300010036	Serpentine Soil	MHPWPPRPLQLRDFVLVALWLAVKVGAGFVIGAALFETVGLMVGLINMAAGG*
Ga0126305_105034362	3300010036	Serpentine Soil	MLGAPFMRSRLEPLQLRDFILVAFWLGVKVVAGLVIGAALFETVGLVVGLITMATGG*
Ga0126304_107082981	3300010037	Serpentine Soil	MRPVPGPLQFRDFVLVAFWLGVKSIAGLVIGAARFETVGLVVG
Ga0126304_108351682	3300010037	Serpentine Soil	MRLRSEPLQLGNFVLVAFWLAVKLVAGLVIGAALFETLGAVVGLTHLVLGG*
Ga0126304_110012133	3300010037	Serpentine Soil	MLGAPFMRSRLEPLQFRDFILVAFWLGAKIVAGLVIGAALFETVGLVVGLITMATGG*
Ga0126315_109560301	3300010038	Serpentine Soil	MRSPSEPLQLREFVLAAFWLAMKIAAGFVIGAALFETVGLVIGLLT
Ga0126315_111552362	3300010038	Serpentine Soil	MCLRSEPLQLRDFVLVAFWLAVKLVAGLVIGAALFETLGVVVGLTHLVLGG*
Ga0126309_101239481	3300010039	Serpentine Soil	MLGAPFMRSRLEPLQLRDFILVAFWLALKIVAGLVIGAALFETVGLVVGLITIATGG*
Ga0126309_102992092	3300010039	Serpentine Soil	MHPRPPRPLQLRDFVLVAFWLAVKAGAGFVIGAALFETVGLMVGLINMAAGG*
Ga0126309_103542252	3300010039	Serpentine Soil	MHPRPPRPLQLRDFVLVVFWLAVKVAAGFVIGAALFETVGLMVGLINMAAGG*
Ga0126309_103990792	3300010039	Serpentine Soil	MRSQLEPLQLRDFVLVAFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0126309_106588921	3300010039	Serpentine Soil	MRSRREPLQLRDFILVAFWLGVKIVAGLVIGAALFETVGLAVGLITMATGQ*
Ga0126309_106721341	3300010039	Serpentine Soil	MRLRSEPLQLRDFVLVAFWLAVNLMAGFVIGAALFETLGVIVGLTKLVMGG*
Ga0126309_109293041	3300010039	Serpentine Soil	MRPPLTRPPQLRNFVLVAFWLGVKIAVGLVIGAALFETIGLIIGLINRASGG*
Ga0126308_101724891	3300010040	Serpentine Soil	MRSPPEPRQLRDFASVAFWLLIKIVVGFLIGAALFETAGLVVGLVTLMTGG*
Ga0126308_107192332	3300010040	Serpentine Soil	MHPWPPRPLQLRDFLLVALWLAVKVAAAFVIGVAVFETVGLMVGLINMAAGG*
Ga0126312_102609673	3300010041	Serpentine Soil	MLGAPFMRSRLEPLQLRDFILVAFWLAVKIVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0126312_102657753	3300010041	Serpentine Soil	MLWSDHVLVLGAPVMRSRLERLQLRDFASVVFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0126312_104801833	3300010041	Serpentine Soil	MRLRSEPLQLRDFVLVAFWLAVKLVAGFVIGAALFETLGVIVGLTKLVLGG*
Ga0126312_104918353	3300010041	Serpentine Soil	MHPRPPRPLQLRDFVLVAFWLAVKVAAAFVIGAALFETVGLMVGLINMAAGG*
Ga0126312_108635923	3300010041	Serpentine Soil	MRPVPGPLQFRDFVLVAFWLGVKSIAGLVIGAALFETVGLVVGLITRATGG*
Ga0126312_111089661	3300010041	Serpentine Soil	MRSSSEPLQLREFVLAAFWLAVKIAAGFVIGAALFETVGLVIGLLTVVIGR
Ga0126314_103277754	3300010042	Serpentine Soil	MRLRSEPLQLRDFVLVAFWLAVKLVAGLVIGAALFETLGVVVGLTKLVMGG*
Ga0126314_105605212	3300010042	Serpentine Soil	HLRNFISVAFWLAVRMVVGLVIGAALFETVGVGVGLIARAMGG*
Ga0126314_108923752	3300010042	Serpentine Soil	MLGAPFMRLRLEPLQLRDFILVAFWLGVKVVAGLVIGAALFETVGLVVGLITMATGG*
Ga0126314_109483222	3300010042	Serpentine Soil	MRSSSEPLQLREFVLAAFWLAVKIAAGFVIGAALFETVGLVIGLLTVVTGR*
Ga0126310_102785252	3300010044	Serpentine Soil	MRSRPQPLQLRDFASVAFWLGVKIVAGFLIGAALFETVGLAVGRVTMATGQ*
Ga0126310_103293042	3300010044	Serpentine Soil	MRLRSEPFPLRGFVLVAFWLAVKLMAGLVIGAALFETLGVVVGLTHLVMGG*
Ga0126310_104978761	3300010044	Serpentine Soil	MRSPSEPLQLREVVLAAVWLAVKIAAGFVIGAALFETVGLVIGLLTVV
Ga0126310_105662282	3300010044	Serpentine Soil	MRLRSEPLQLRDFVLVAFWLAVKLMAGFVIGAALFETLGVIVGLTKLVMS*
Ga0126310_111466001	3300010044	Serpentine Soil	MRPPLIRPLQLRNFVLVAFWLGVKIAVGLVIGAALFETVGLVVGLIALASGT*
Ga0126310_114333022	3300010044	Serpentine Soil	MHHWINRRLQLGDFVLAAFWFAVKAVAALVIVAALFETIGLAVGLIAMAAGS*
Ga0126310_115874391	3300010044	Serpentine Soil	MRPPLDPPPHLRDFVRVAFWLAVKMAVGLVIGAALFETVGVGVGVINRAVGG*
Ga0126310_116327772	3300010044	Serpentine Soil	MLGAPFMRSRLEPLQFRDFIWVAFWLAVKIVAGLVIGAALFETVGLVVGLITMATGG*
Ga0126311_104031892	3300010045	Serpentine Soil	MHPWPPRPLQLRDFVLVALWLAVKVGAGFVIGAALFETVGLIIGLINMAMGG*
Ga0126311_108516601	3300010045	Serpentine Soil	PEFMLWSDHVLVLGAPVMRSRLERLQLRDFASVAFWLGVKIVAGFLIGAALFETVGLVVGLVTMATGQ*
Ga0127481_11289461	3300010101	Grasslands Soil	MRLRPEPLQLRDFVLVAFWLAVKIMAGLVIGAALLETVGLIIGLINAGMAG*
Ga0126320_12395691	3300010146	Soil	LHLRDFARVAFWLAVKMALGLVIGAALFETVGVGVGVITRAMGG*
Ga0126306_108601581	3300010166	Serpentine Soil	MRPPLTRPPNLRNFVEVTFWLGVKIAVGLVIGAALFETVGLVVGLIALASGT*
Ga0126306_117510281	3300010166	Serpentine Soil	MRSRLERLQLRDFASVAFWLGVKIVVGLVIGAALFETVGLVVGLVTMATGQ*
Ga0134125_108408512	3300010371	Terrestrial Soil	MRPPLASLQLRDFVSVAFWLAVKMVVGLVIGAALFETVGLAVGLIGRAMGG*
Ga0134128_118844152	3300010373	Terrestrial Soil	MRPPLASLHLRDFVSVAFWLAVKMVAGLVIGAALFETVGLAVGLIGRAMGG*
Ga0105239_136306251	3300010375	Corn Rhizosphere	MRPTLASLHLRDFVSVAFWLAVKMVVGLVIGAALFETVGVGVGLIGRAMGG*
Ga0134127_133294021	3300010399	Terrestrial Soil	MRPPLASLHLRDFVSVAFWLPVKMVVGLVIGAALFETVGLAVGLIGRAMGG*
Ga0134122_103558463	3300010400	Terrestrial Soil	MRLRPEPLQLRDFVLVAFWLAVKIMAGLVIGAALLETVGLIVGLITAAMAG*
Ga0150985_1005566492	3300012212	Avena Fatua Rhizosphere	LTPSDEFVALKLLLRAPIMRSRPEPLQLRDFGSIAFWLLVKIGVGLVVGATLFETVGLVVGLITRMTGG*
Ga0150985_1027152421	3300012212	Avena Fatua Rhizosphere	MRLRSEPLQLRGFVLVAFWLAVKLVAGLVIGAALFETVGVVVGLTKLVMGG*
Ga0150985_1065775602	3300012212	Avena Fatua Rhizosphere	MRPPLALLHLRNFISVAFWLAVRMVVGLVIGAALFETVGVGVGLIARAMGG*
Ga0150985_1084552191	3300012212	Avena Fatua Rhizosphere	MRSPSQPLQIRDFASVAFWLLLKTGVGLLIGAALFETVG
Ga0150985_1110712754	3300012212	Avena Fatua Rhizosphere	MLGAPFMRSQLEPLQLRDFILVAFWLGVKIVAGLVIGAALFETVGLVVGLITMATGG*
Ga0150985_1120136191	3300012212	Avena Fatua Rhizosphere	MRSLLEPLQLRDFVLVAFWLGVKVVAGLVIGAALFETVGLVVGLVTMATGG*
Ga0150985_1126564341	3300012212	Avena Fatua Rhizosphere	MHSRPPRPLQLRDFVLVAFWLAVKVGVGFVIGAALFETVGLVIGLINMATGG*
Ga0150985_1157897382	3300012212	Avena Fatua Rhizosphere	MRLRSEPFQLRSFVLVAFWLAVKLMAGLVIGAALFETAGLVVGLTNVVMSR*
Ga0134056_11849713	3300012397	Grasslands Soil	MRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLII
Ga0150984_1013465491	3300012469	Avena Fatua Rhizosphere	MRLRSEPFQLRGFVLVAFWLAVKLMAGLVIGAALFETAGLVVGLTNVVMSR*
Ga0150984_1032233771	3300012469	Avena Fatua Rhizosphere	MRPTLASLHLRDFVSVAFWLAVKMVAGLVLGAALFETVGLAVGLIGRAMGG*
Ga0150984_1104461442	3300012469	Avena Fatua Rhizosphere	MRSRREPLQLRDFILVAFWLGVKIVAGLVIGATLFESVGLVVGLITMATGG*
Ga0150984_1226990771	3300012469	Avena Fatua Rhizosphere	MRSPPEPRQLRDFASVAFWLLIKIVVGFLIGAALFETAGLVVGPVTLMTGG*
Ga0163162_105195151	3300013306	Switchgrass Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMVVGLVIGAALFETVGLAVGLIGRVMGG*
Ga0163162_107504992	3300013306	Switchgrass Rhizosphere	MHPWPPRPLQLRDFVLVAFWLAVKVGVGFVIGAALFETVGLVIGLINMATGG*
Ga0163162_118674972	3300013306	Switchgrass Rhizosphere	MVGVAVMRSPPEPLQLRDFASVAFWLLVKIGVSFVVGAALFETVGLVVGLITRMTGG*
Ga0163162_122298832	3300013306	Switchgrass Rhizosphere	MVHLRPEPIQLRGFVLVAFWLIVKIIAGLVIGAALFETIGLVIGLINVMAGG*
Ga0157375_105412891	3300013308	Miscanthus Rhizosphere	MRLRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLIIGLITAEMAG*
Ga0157375_115850662	3300013308	Miscanthus Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMVVGLVIGAALFETVGLAVGLIGRAMGG*
Ga0157377_116869631	3300014745	Miscanthus Rhizosphere	MRPPLASLHLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0157379_110184401	3300014968	Switchgrass Rhizosphere	MRPQPEPLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG*
Ga0157379_111966481	3300014968	Switchgrass Rhizosphere	MRPALASLHLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG*
Ga0157379_120939431	3300014968	Switchgrass Rhizosphere	LRPEPLQLRDLVLVAFWLAVKIMAGLVIGAALLETVGLIIGLINAGMAG*
Ga0163161_103753342	3300017792	Switchgrass Rhizosphere	MRPPFASLQLRDFVSVAFWLAVKMAVGLVIGAAFFETIGLAVGLINMAMSG
Ga0163161_118259991	3300017792	Switchgrass Rhizosphere	MRSPPEPLQLREFASIAFWLLVKIVVVFLIGVALFETVGLVVGLVTLMTGG
Ga0190269_106693892	3300018465	Soil	MRLRSEPLQLRDFVLVAFWLAVKLVAGLVIGAALFETLGVIVGLTNLVMGG
Ga0190268_101224281	3300018466	Soil	MRLRSEPLQLRDFVLVAFWLAVKLVAGLMIGAALFEALGVIVGLTNLVMGG
Ga0190268_115728021	3300018466	Soil	MRSRLERLQLRDFASVAFWLGVKIVAGLVIGAALFETVGLVVGLVTMATG
Ga0193608_10463291	3300018875	Soil	MRLRSEPLQLRDFVLVAFWLAVKLVASLVIGAALVETVGLIVGLINAVISR
Ga0190264_116143662	3300019377	Soil	MRPRPEPLHLLDFVSAAFWLLVKIVAGFVIGAALFEIVGLVVGLI
Ga0190267_106458031	3300019767	Soil	MRPLLDPPPHLRDFVRVAFWLAVKMAVGLVIGAALFETVGVGVGVINRAVGG
Ga0190267_108096702	3300019767	Soil	MRSRLEPLQLRDFILVAFWLALKIVAGLVIGAALFETVGLVVGLITMATG
Ga0190267_110222502	3300019767	Soil	DHVLLLGAPVMRSRPQPLQLRDFASVAFWLGVKIVAGFLIGAALFETVGLVVGLVTMATG
Ga0207669_111173601	3300025937	Miscanthus Rhizosphere	MHPQPEPLPLRDFASVAFWLLVKIVAGFVIGAALFETVGLIVGLISAVTGG
Ga0207712_113180111	3300025961	Switchgrass Rhizosphere	LASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG
Ga0207677_101854031	3300026023	Miscanthus Rhizosphere	MRPPLASLQLRDFVSVAFWLAVKMAVGLVIGAALFETIGLAVGLINMAMSG
Ga0207708_110812931	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHAASAASIAFWLLVKIGVGFLIGVALFETVGLVVGLVTLMTSG
Ga0268265_122138471	3300028380	Switchgrass Rhizosphere	MRLRPEPLQLRDLVLVAFFWLAVKIMAGLVIGAALLETVGLIIGLIN
Ga0307288_103945562	3300028778	Soil	MRSQLEPLQLRDFILVAFWLGVKIVAGLVIGAALFETVGLVVGLITMATGG
Ga0310890_116717502	3300032075	Soil	MHLRSEPLHLRGFVSVAFWLLVKIMAGFVIGAALFETIGLVVGLINAVTGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F051852

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences