Metagenome / Metatranscriptome Family F052212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052212
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	59 residues
Representative Sequence	LQQIATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN
Number of Associated Samples	106
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.11 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	83.22 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.503 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.476 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF13620	CarboxypepD_reg	3.50
PF02405	MlaE	3.50
PF09084	NMT1	2.80
PF12704	MacB_PCD	2.10
PF07885	Ion_trans_2	2.10
PF13561	adh_short_C2	1.40
PF12680	SnoaL_2	1.40
PF13646	HEAT_2	1.40
PF03544	TonB_C	1.40
PF02272	DHHA1	1.40
PF09720	Unstab_antitox	1.40
PF00701	DHDPS	1.40
PF13450	NAD_binding_8	1.40
PF02687	FtsX	1.40
PF12867	DinB_2	1.40
PF00294	PfkB	0.70
PF00092	VWA	0.70
PF01436	NHL	0.70
PF13432	TPR_16	0.70
PF01292	Ni_hydr_CYTB	0.70
PF00581	Rhodanese	0.70
PF01979	Amidohydro_1	0.70
PF17189	Glyco_hydro_30C	0.70
PF00174	Oxidored_molyb	0.70
PF13545	HTH_Crp_2	0.70
PF11737	DUF3300	0.70
PF07238	PilZ	0.70
PF13360	PQQ_2	0.70
PF01717	Meth_synt_2	0.70
PF12848	ABC_tran_Xtn	0.70
PF01740	STAS	0.70
PF13420	Acetyltransf_4	0.70
PF13414	TPR_11	0.70
PF01061	ABC2_membrane	0.70
PF04961	FTCD_C	0.70
PF00330	Aconitase	0.70
PF14534	DUF4440	0.70
PF00082	Peptidase_S8	0.70
PF07274	DUF1440	0.70
PF13442	Cytochrome_CBB3	0.70
PF07927	HicA_toxin	0.70
PF02576	RimP_N	0.70
PF08530	PepX_C	0.70
PF08447	PAS_3	0.70
PF13495	Phage_int_SAM_4	0.70
PF07977	FabA	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	3.50
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	2.80
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.80
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.80
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.40
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.70
COG0764	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	Lipid transport and metabolism [I]	0.70
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.70
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.70
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.70
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.70
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.70
COG2936	Predicted acyl esterase	General function prediction only [R]	0.70
COG3038	Cytochrome b561	Energy production and conversion [C]	0.70
COG3404	Formiminotetrahydrofolate cyclodeaminase	Amino acid transport and metabolism [E]	0.70
COG3477	Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 family	Function unknown [S]	0.70
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.70
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.70
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.70
COG4706	Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain	Lipid transport and metabolism [I]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.50 %
Unclassified	root	N/A	3.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.50 %
Unclassified	root	N/A	3.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.50 %
Unclassified	root	N/A	3.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.29 %
Unclassified	root	N/A	3.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.10 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.70 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	46.15 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.69 %
Unclassified	root	N/A	3.50 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.80 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.10 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.70 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.29 %
Unclassified	root	N/A	3.50 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.80 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.10 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.40 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.70 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.70 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.59 %
Unclassified	root	N/A	3.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.10 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.40 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.70 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.45 %
Unclassified	root	N/A	3.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.10 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	1.40 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.40 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.70 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.45 %
Unclassified	root	N/A	3.50 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.10 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1.40 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.40 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.70 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10017724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1884	Open in IMG/M
3300002245\|JGIcombinedJ26739_100691309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300002245\|JGIcombinedJ26739_100698754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	892	Open in IMG/M
3300002557\|JGI25381J37097_1012554	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300002560\|JGI25383J37093_10145430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300002907\|JGI25613J43889_10099274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	756	Open in IMG/M
3300002916\|JGI25389J43894_1076529	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004082\|Ga0062384_100876350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300004103\|Ga0058903_1005578	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300004614\|Ga0068956_1325850	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300005176\|Ga0066679_10527619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300005178\|Ga0066688_10064318	All Organisms → cellular organisms → Bacteria → Acidobacteria	2161	Open in IMG/M
3300005436\|Ga0070713_102388202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300005468\|Ga0070707_100561686	All Organisms → cellular organisms → Bacteria → Acidobacteria	1103	Open in IMG/M
3300005518\|Ga0070699_101754469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300005538\|Ga0070731_10029507	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3722	Open in IMG/M
3300006050\|Ga0075028_101041487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300006050\|Ga0075028_101087629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300006163\|Ga0070715_11029144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300006172\|Ga0075018_10450020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300006176\|Ga0070765_100184879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1883	Open in IMG/M
3300006176\|Ga0070765_100620756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1020	Open in IMG/M
3300006893\|Ga0073928_10577413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300007255\|Ga0099791_10236812	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300007255\|Ga0099791_10600274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300007258\|Ga0099793_10115834	All Organisms → cellular organisms → Bacteria → Acidobacteria	1250	Open in IMG/M
3300007265\|Ga0099794_10470121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	660	Open in IMG/M
3300007788\|Ga0099795_10164129	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300009038\|Ga0099829_11570527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300009089\|Ga0099828_10103815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2462	Open in IMG/M
3300009089\|Ga0099828_10331004	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300010159\|Ga0099796_10172173	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300010379\|Ga0136449_101117376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1252	Open in IMG/M
3300011078\|Ga0138565_1005778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300011088\|Ga0138576_1230775	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300011269\|Ga0137392_10171937	Not Available	1760	Open in IMG/M
3300011271\|Ga0137393_10424281	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300011271\|Ga0137393_10589384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300012203\|Ga0137399_10801094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300012203\|Ga0137399_10993792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300012203\|Ga0137399_11387423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012203\|Ga0137399_11752852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300012362\|Ga0137361_10091650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2624	Open in IMG/M
3300012362\|Ga0137361_10213517	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300012683\|Ga0137398_10016333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3919	Open in IMG/M
3300012683\|Ga0137398_10160793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300012683\|Ga0137398_11189934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300012685\|Ga0137397_10033698	All Organisms → cellular organisms → Bacteria	3656	Open in IMG/M
3300012918\|Ga0137396_10858581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300012923\|Ga0137359_10077879	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300012924\|Ga0137413_10276559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300012925\|Ga0137419_10366025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300012927\|Ga0137416_11555202	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012944\|Ga0137410_10656784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300014159\|Ga0181530_10179314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300014200\|Ga0181526_10516358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300014501\|Ga0182024_10042803	All Organisms → cellular organisms → Bacteria	7385	Open in IMG/M
3300014501\|Ga0182024_10380404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1833	Open in IMG/M
3300017930\|Ga0187825_10056765	All Organisms → cellular organisms → Bacteria → Acidobacteria	1329	Open in IMG/M
3300017936\|Ga0187821_10017768	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300017955\|Ga0187817_10888471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300020170\|Ga0179594_10032285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1680	Open in IMG/M
3300020199\|Ga0179592_10041908	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2076	Open in IMG/M
3300020199\|Ga0179592_10043916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2028	Open in IMG/M
3300020579\|Ga0210407_10512774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
3300020580\|Ga0210403_10170512	All Organisms → cellular organisms → Bacteria → Acidobacteria	1783	Open in IMG/M
3300020580\|Ga0210403_11083901	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300020581\|Ga0210399_10198371	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300020581\|Ga0210399_10854922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300020581\|Ga0210399_11013635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300020582\|Ga0210395_10687034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300020583\|Ga0210401_10099114	All Organisms → cellular organisms → Bacteria	2738	Open in IMG/M
3300021046\|Ga0215015_10517402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300021088\|Ga0210404_10914418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300021168\|Ga0210406_10226687	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300021168\|Ga0210406_11270813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300021170\|Ga0210400_10236766	All Organisms → cellular organisms → Bacteria → Proteobacteria	1490	Open in IMG/M
3300021170\|Ga0210400_11126602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300021171\|Ga0210405_11070423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300021180\|Ga0210396_11465140	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300021180\|Ga0210396_11755306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021181\|Ga0210388_10723468	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300021181\|Ga0210388_11249185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300021405\|Ga0210387_11779832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300021420\|Ga0210394_10006994	All Organisms → cellular organisms → Bacteria	12031	Open in IMG/M
3300021420\|Ga0210394_11568130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300021420\|Ga0210394_11829723	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300021432\|Ga0210384_10081332	All Organisms → cellular organisms → Bacteria	2913	Open in IMG/M
3300021432\|Ga0210384_10573767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1014	Open in IMG/M
3300021476\|Ga0187846_10115513	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300021478\|Ga0210402_10566539	Not Available	1054	Open in IMG/M
3300021478\|Ga0210402_11513283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	598	Open in IMG/M
3300021559\|Ga0210409_10087529	All Organisms → cellular organisms → Bacteria	2879	Open in IMG/M
3300021559\|Ga0210409_11670354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300022531\|Ga0242660_1216834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300025928\|Ga0207700_11969543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300026329\|Ga0209375_1112119	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300026359\|Ga0257163_1016285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1142	Open in IMG/M
3300026377\|Ga0257171_1034126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300026507\|Ga0257165_1103167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300026528\|Ga0209378_1230655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300026551\|Ga0209648_10007108	All Organisms → cellular organisms → Bacteria → Acidobacteria	9610	Open in IMG/M
3300026557\|Ga0179587_10105047	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1714	Open in IMG/M
3300027535\|Ga0209734_1048916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300027603\|Ga0209331_1101585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300027635\|Ga0209625_1028741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1238	Open in IMG/M
3300027651\|Ga0209217_1194089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300027671\|Ga0209588_1045263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1424	Open in IMG/M
3300027875\|Ga0209283_10024309	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3740	Open in IMG/M
3300027910\|Ga0209583_10210802	Not Available	835	Open in IMG/M
3300027911\|Ga0209698_10291175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300027911\|Ga0209698_10320726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1223	Open in IMG/M
3300028047\|Ga0209526_10100507	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300028047\|Ga0209526_10334537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300028047\|Ga0209526_10768491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300028536\|Ga0137415_10101394	All Organisms → cellular organisms → Bacteria	2732	Open in IMG/M
3300028577\|Ga0265318_10349466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300029910\|Ga0311369_10860229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300029999\|Ga0311339_10832401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300031234\|Ga0302325_13144304	Not Available	529	Open in IMG/M
3300031247\|Ga0265340_10514252	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031595\|Ga0265313_10042264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2240	Open in IMG/M
3300031595\|Ga0265313_10119973	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300031711\|Ga0265314_10163335	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300031712\|Ga0265342_10459627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300031720\|Ga0307469_12449664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300031753\|Ga0307477_10822185	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300031754\|Ga0307475_10168453	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300031823\|Ga0307478_10745486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	820	Open in IMG/M
3300031823\|Ga0307478_11075297	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300031962\|Ga0307479_10157203	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2231	Open in IMG/M
3300031962\|Ga0307479_10244385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1771	Open in IMG/M
3300031962\|Ga0307479_10436102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300031962\|Ga0307479_10725170	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300032174\|Ga0307470_11147714	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300032180\|Ga0307471_103586691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300032205\|Ga0307472_100022419	All Organisms → cellular organisms → Bacteria	3491	Open in IMG/M
3300032205\|Ga0307472_100022699	All Organisms → cellular organisms → Bacteria → Acidobacteria	3475	Open in IMG/M
3300032205\|Ga0307472_100773929	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300032205\|Ga0307472_101488454	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300032782\|Ga0335082_11522695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300032954\|Ga0335083_10247557	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.80%
Host-Associated	Host-Associated	4.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.71%
Aquatic	Environmental → Aquatic	9.09%
Plants	Host-Associated → Plants	4.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.92%
Freshwater	Environmental → Aquatic → Freshwater	4.20%
Sediment	Environmental → Aquatic → Sediment	4.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.20%
Peat	Environmental → Terrestrial → Peat	2.10%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.70%
Cave	Environmental → Terrestrial → Cave	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.53%
Loam	Environmental → Terrestrial → Soil → Loam	12.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.10%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.70%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.10%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.40%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.40%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.70%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.20%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.10%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.40%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.40%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.40%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.40%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.70%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.70%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004614	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004620	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011088	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100177243	3300001471	Forest Soil	AAAITADYSRELNPAPAQLLYDSITDHSRNEVVVEDAVEHAIKNASVESP*
JGIcombinedJ26739_1006913092	3300002245	Forest Soil	DEYNRELNPGPTQLLYDAITDHSRNEVVAQEAVDHALKNISMESAPTATPN*
JGIcombinedJ26739_1006987541	3300002245	Forest Soil	MAADITDEYNKELNPGPTQLLYDNITDHGRNEVVVKDAVDHAIKNVTVEWTQPTTNPGN*
JGI25381J37097_10125541	3300002557	Grasslands Soil	KMLQEMAADITDEYKKGLNPGPTQLLYDAITDHGRNDVVVKDAVAHALKNITIESTQPTTNTGN*
JGI25383J37093_101454301	3300002560	Grasslands Soil	LQQIATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN*
JGI25613J43889_100992742	3300002907	Grasslands Soil	DEYNXELNPGPXQLLYDNITDHGRNETAVKDXVDHALKNVTVEWTQPTTKPGN*
JGI25389J43894_10765291	3300002916	Grasslands Soil	EYKKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNSGN*
Ga0062384_1008763501	3300004082	Bog Forest Soil	MANEITDEYNEELNPEPAQLLYDSITDHSRNGVVSKDAAAHAIQNVAMEPNPK*
Ga0058903_10055781	3300004103	Forest Soil	EYKRELNPGPTQLLYDSITDHGRNEVIVKDAIASAIKNVAIESPQQ*
Ga0068956_13258502	3300004614	Peatlands Soil	ASDITEEYNKELNPGPTQRLYDTITDHSRNGVVAKHAVDHAIKNTTIESAQPTTNPGN*
Ga0068957_14692561	3300004620	Peatlands Soil	LNPGPTQRLYDTITDHSRNGVVAKDAVDHAIKNTAIESAQPTTNPGN*
Ga0066679_105276192	3300005176	Soil	DLGAESSKMLQQMATDITDEYNKELNSGPTQLLYDTITDHGRSDVVVKDAVAQVLKNITIQSTQPTTNPRN*
Ga0066688_100643181	3300005178	Soil	TKLFEQVATEITDEYSKELNPGPTQLLYDGITDHGRNEVIVKDAVASAIKNAVESPQPATHPGN*
Ga0070713_1023882021	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QQMAADITAEYSRELNPGPTQLLYDAITDHGRNEVVVQEALAHAIKNVAIESPQPATNPGN*
Ga0070707_1005616861	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AADITAEYSRELNPGPTQLLYDAITDHGRNEVVVQEALAHAIKNVAIESPQPATNPGN*
Ga0070699_1017544691	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ADITAEYSRELNPGPTQLLYDAITDHGRNEVVVQEALAHAIKNVAIESPQPATNPGN*
Ga0070731_100295074	3300005538	Surface Soil	ASEITTEYGKELNTEPTQLLYDSITDHARNDVSYKDAVAHALKNAAVEYR*
Ga0075028_1010414872	3300006050	Watersheds	ITDEYKKELNPGPTQLLYDSITDHGRNEVVVKDAVAHALKNIAIESPQPAATPGN*
Ga0075028_1010876291	3300006050	Watersheds	SGKMLQEMAAEITAAYNKELNPGPAQLLFDSITDHGRNEVVVQDAVAHALRNAL*
Ga0070715_110291441	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ADLTAEYNQELNPGPTQQLYDDITDHGRNEVVVQDAVAHAIKNVAIDAPQPKTNPGN*
Ga0075018_104500201	3300006172	Watersheds	AESSKMLQQMATDVTDEYKKELNPGPTQLLYDAITDHGRNEVVVKDAIAHAIKNITIDPPQPAANPAS*
Ga0070765_1001848791	3300006176	Soil	LQQMAADITDEYNKELNPGPTQLLYDAITDHGRNDVVVKDAVAHALKNIAIESPQPRTNPEN*
Ga0070765_1006207562	3300006176	Soil	DEYNKELNPGPTQLLYDSITDHGRNEVVVKDAVASAIKNVSAESPRPAATPGN*
Ga0073928_105774132	3300006893	Iron-Sulfur Acid Spring	ATDITNDYNKELNSNPTQLLYDAITDHSRNGVIAKDAVDHALKNTAIESTQPASNPGS*
Ga0099791_102368122	3300007255	Vadose Zone Soil	MLQQMATDITDEYNKELNPGPAQLLYDAITDHGRHEVVVKDAVAHALRNTTIESTQPATNPGN*
Ga0099791_106002741	3300007255	Vadose Zone Soil	LGAESNKMLQQIATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN*
Ga0099793_101158341	3300007258	Vadose Zone Soil	TKMLQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVRDAVAAAIKNIAIE*
Ga0099794_104701212	3300007265	Vadose Zone Soil	GAESSKMLQQMAADITDEYNMELNPGPAQLLYDNITDHGRNETAVKDVVDHALKNVTVEWTQPTTKPGN*
Ga0099795_101641292	3300007788	Vadose Zone Soil	EYNKQLNPEPAQLLYDTITDHSRNEVVVKDAVAHALKNVSVESRQPATN*
Ga0099829_115705271	3300009038	Vadose Zone Soil	GTDLGAESRKMLQQMTTDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTTIESTQPATNPGN*
Ga0099828_101038152	3300009089	Vadose Zone Soil	GAESSKMLQQMATDITDEYNKELNPGPTQLLYDAITDHGRNEVIVKDAVAHAIKNVAIESTQPTTNPGN*
Ga0099828_103310043	3300009089	Vadose Zone Soil	TDMGAESTKMLQQMAADITDEYKKELNPGPAQLLYDSITDHGRNEVVVKDAVAHALKNTTIESTQPATNPGN*
Ga0099796_101721731	3300010159	Vadose Zone Soil	RMLQEMARDITAEYNKELNPGPTQLLYDAITDHGRNEGVVQDAVAHAIKNVAIESPPPTTNPGN*
Ga0136449_1011173761	3300010379	Peatlands Soil	LQQMTIEITDEYNKQLNPGPTQLLYDSITDHGRNDVAVKDAVAHSLKNTAIESPQPATNPEN*
Ga0138565_10057782	3300011078	Peatlands Soil	ASDITEEYNKELNPGPTQRLYDTITDHSRNGVVAKHAVDHAIKNTAIESAQPTINPGN*
Ga0138576_12307752	3300011088	Peatlands Soil	EEYNKELNPGPTQRLYDTITDHSRNGVVAKDAVDHAIKNTAIESAQPTTNPGN*
Ga0137392_101719373	3300011269	Vadose Zone Soil	DEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHAIKNVAIESAQPTTNPGN*
Ga0137393_104242813	3300011271	Vadose Zone Soil	LQQTATEITEEYKRELNPGPTQLLYDSITDHGRNEVVVKDAVASAIKNVVAESPHAPANPGN*
Ga0137393_105893841	3300011271	Vadose Zone Soil	DEYNKEVNPGPTQLLYDAITDHGRNEVDVKDAVAHALKNITVESTQPMANPGN*
Ga0137399_108010941	3300012203	Vadose Zone Soil	ATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVVHALKNIAVDSTQPTTNPGN*
Ga0137399_109937921	3300012203	Vadose Zone Soil	NKELNPGPAQLLYDAITDHGRNEVDVKDAVAHALKNITVEPTQPTTNPGN*
Ga0137399_113874231	3300012203	Vadose Zone Soil	SSKMLQQMATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAVDSTQPTTNPGN*
Ga0137399_117528521	3300012203	Vadose Zone Soil	ESTRMLQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQNAVAAAIKNIAIE*
Ga0137361_100916503	3300012362	Vadose Zone Soil	DLGAESTKMLQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQDAVAAAIKNIAIE*
Ga0137361_102135174	3300012362	Vadose Zone Soil	SKMLQQIAADITAEYNKELNPGPTQLLYDTITDHGRNDTVVKDAVAHAIQNVTVESAQPTTNPGN*
Ga0137398_100163334	3300012683	Vadose Zone Soil	DLGAESSRMLQEMARDITAEYNKELNPGPTQLPYDAITDHGRNEGVVQDAVAHAIKNVAIESAPPTTNPGN*
Ga0137398_101607931	3300012683	Vadose Zone Soil	VLAQTATEITEEYNKELNPEPAQLLYDTITDHSRNEVVVKDAVAHALKNVSVESRQPATK
Ga0137398_111899341	3300012683	Vadose Zone Soil	TKLLQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQDAVAAAIKNIAIE*
Ga0137397_100336984	3300012685	Vadose Zone Soil	ITGEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN*
Ga0137396_108585811	3300012918	Vadose Zone Soil	ESSKMLQQMATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAVDSTQPTTNPGN*
Ga0137359_100778791	3300012923	Vadose Zone Soil	QQMATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALRNTTIESTQPATNPGN*
Ga0137413_102765593	3300012924	Vadose Zone Soil	ATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQDAVAAAVKNVAIE*
Ga0137419_103660251	3300012925	Vadose Zone Soil	QMATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVVHALKNIAVDSTQPTTNPGN
Ga0137416_115552022	3300012927	Vadose Zone Soil	LQQKAADIGGEYNRELNPGPTQLLYDSITDHGRNEVVVKDAVAHAIKNVAIEATQPATNPGN*
Ga0137410_106567842	3300012944	Vadose Zone Soil	ITKEYNKELNPEPAQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN*
Ga0181530_101793141	3300014159	Bog	AADITTEYNRQLNTEPTQLLYDSITDHSRNEVVAQDAVDHALKNVTIEFKQPEK*
Ga0181526_105163581	3300014200	Bog	EITDEYRKQLNPEPAQLLYDSITDHSRNEVAVKDAVAHVIKNVVIESSPVRANEPDSR*
Ga0182024_100428031	3300014501	Permafrost	EEYNRELNPEPTQLLYDSITNHGVNDTVAKDAAAYAIRNVVIDSPQPPAAPGN*
Ga0182024_103804042	3300014501	Permafrost	LQQMAAEITDEYNKELDPGPTQLLYDAITDHSRNEVVVQDAIAAAIANNPIAATQPATDPGN*
Ga0187825_100567651	3300017930	Freshwater Sediment	QMGAEITAEYDKELNPNPAQLLYDSITDHSRNDVAVQEAVDHALKNVSVETDQPAGDAAPDHP
Ga0187821_100177684	3300017936	Freshwater Sediment	QKIATEITDEYNKELNPGPTQLLYDSITDHGRNEVIVKDAVASAIKNVAAESPRPVATPG
Ga0187817_108884712	3300017955	Freshwater Sediment	ADITDEYNKELNPAPTQLLYDEITDHSRNAVVAKDAVDHALKNGAIESTRPASPD
Ga0179594_100322851	3300020170	Vadose Zone Soil	TGTDLGAESTKMLQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQDAVAAAIKNIAIE
Ga0179592_100419083	3300020199	Vadose Zone Soil	QQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVRDAVAAAIKNIAIE
Ga0179592_100439161	3300020199	Vadose Zone Soil	KMLQQMATDITDEFNKDLNPGPAQLLYDAITDHGRNEVVVKDAVAHTLRNTTIDSTQPATNPGN
Ga0210407_105127742	3300020579	Soil	EEYNKELSPGPTQRLYDAITDHSRNGVVAKDAVDHAIKNTAVESAQPTTNPGN
Ga0210403_101705121	3300020580	Soil	KMLRQIATEITDEYGKELNPGPTQLFYDAITDHGRNGADAKDAVAHALKNVAIEAGN
Ga0210403_110839011	3300020580	Soil	DLGAESSEMLQQMAAEITDEYGRELNPGPAQLLYDSITDHGRNDVVVMDAVAHALKNTAIDSLSH
Ga0210399_101983713	3300020581	Soil	TNSALQQMASEITEEYDKQLNPNPTQLLYDSITDHSRNEVVVQDAVDHALKNVSIESN
Ga0210399_108549222	3300020581	Soil	QLATDITDEYNKELNTGPTQLLYDAITDHGRNEVVAEDAVAHALKNITVESTQPTTNPGN
Ga0210399_110136351	3300020581	Soil	DEYNRELNTEPTQLLYDTITDHSRNEVVAKDAVAHAIKNITLESTQPVSPQ
Ga0210395_106870341	3300020582	Soil	DLNTESNKMLLEMASEITHEYNRELNPGPTQLLYDAITDHGRNDVPVQDAVAHAIKNVLIESAQPAPNPGN
Ga0210401_100991143	3300020583	Soil	MLQQLANDITDEYNKELNPEPAQLLYDAITDHSRNEVVVKDAVAHALKNTVIESTRPSTNTGN
Ga0215015_105174021	3300021046	Soil	EYNKELNPGPTQLLYDAITDHGRNEVDFKDGVAHALKNITVESTQPTTNPRN
Ga0210404_109144181	3300021088	Soil	ATDITDEYNKELNSGPTQLLYDAITDHGRNDIVVKDAVAHALRNITIESTQPATNPGN
Ga0210406_102266871	3300021168	Soil	EYNRELSPGPTQLLYDAITDHGRNDVPVQDAVAHAIKNVMIASGQPTPNPGN
Ga0210406_112708132	3300021168	Soil	MAAAITEEYNKELNPGPTQHLYDAITDHGRNEVVVKDAVAHALKNISIESPQLALPRN
Ga0210400_102367663	3300021170	Soil	AESSKMLQQMAADITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAIESTQPATPPGN
Ga0210400_111266021	3300021170	Soil	GTGLGAESSKMLQQMAADITAEYNKELNPGPTQQLYDSITDHGRNDTVVKDAVAHAIQNVSVESAQPTTNPGN
Ga0210405_110704232	3300021171	Soil	HEITEEYNKELNPEPTQLLYDGITDHGRNEVVVKDAVAHALKNVSIESN
Ga0210396_114651401	3300021180	Soil	GADLDAESSNMLRQIATEITDEYGKELNPGPTQLFYDAITDHGRNGADAKDAVAHALKNVAIEAGN
Ga0210396_117553061	3300021180	Soil	ANLDAESTKWMRQLAGEITEEYNKELNPEPTQLLFDTITDHGRNGVVARDAVVHALKNVSIESN
Ga0210388_107234682	3300021181	Soil	SSKMLPQLANDITDEYNKELNPEPAQLLYDAITDHSRNEVVVKDAVAHALKNTVIESTRPSTNTGN
Ga0210388_112491851	3300021181	Soil	EIATEITDEYNKELNPEPTQLLYDSITNHGVNDVVSKDAAASAIRNVVIDSPQPPTTAGN
Ga0210387_117798322	3300021405	Soil	DYNRELNPGPTQLLYDSITDHGRNEVVVKDAVAHALKNIAIESTQPATNPEN
Ga0210394_100069948	3300021420	Soil	EITDEYNKELNPGPTQLFYDAITDHGRNGADAKDAVAHALKNVAIETTQPAASTGN
Ga0210394_115681302	3300021420	Soil	MATDITEEYNKQLNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNALIESTQPTTTPGN
Ga0210394_118297231	3300021420	Soil	LRQIATEITDEYGKELNPGPTQLFYDAITDHGRNGADAKDAVAHALKNVAIEAGN
Ga0210384_100813323	3300021432	Soil	EYNRELNPGPTQLLYDAITDHGRNDVPVQDAVAHAIKNVLIESAQPAPNPGN
Ga0210384_105737671	3300021432	Soil	ESSKALQQIATEITDEFNKQLNPGPTQLLYDSITDHGRNEVVVKDAVASAIKNVSAESRRPAATPGN
Ga0187846_101155131	3300021476	Biofilm	TATEITDAYRKQLNPEATQLLYDSITDHGRNEVVVKDAVASAIKNVVAESPQPATNGGN
Ga0210402_105665391	3300021478	Soil	SKTLQQLASDITEEYNKELSPGPTQRLYDAITDHSRNGVVAKDAVDHAIKNTAVESAQPTTNPGN
Ga0210402_115132831	3300021478	Soil	LNAESSKMLQQMAAEITDKYGKELNPGPTQTLYDSITDHSRNDIVARDAAVAAINNAEIAAIRPATVPAN
Ga0210409_100875294	3300021559	Soil	IKALQQMAADFTDEYNRELNTEPTQLLYDTITDHSRNEVVAKDAVAHAIKNITFESTQPVSPQ
Ga0210409_116703542	3300021559	Soil	SATEITDEYGKQLNPGPTQLLYDSITDHGRNEVVVKDAVASAIKNVAAESPRPAATPGN
Ga0242660_12168341	3300022531	Soil	SKMLRQMAAGITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAIESTQPATPPGN
Ga0207700_119695432	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	QQMAADITAEYSRELNPGPTQLLYDAITDHGRNEVVVQEALAHAIKNVAIESPQPATNPG
Ga0209375_11121191	3300026329	Soil	MAADITDEYKKELNPGPTQLLYDAITDHGRNEVVVKDAVAYALKNITIESTQPTANSGN
Ga0257163_10162852	3300026359	Soil	LQQTATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVRDAVAAAIKNIAIE
Ga0257171_10341262	3300026377	Soil	QMATDITDKYNKELNPGPTQLLYDAITDHGRNDVVVKDAVAHALKNITIESTQPTTNPGN
Ga0257165_11031671	3300026507	Soil	ESTRMLQQIATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVQNAVAAAIKNIAIE
Ga0209378_12306551	3300026528	Soil	MLQQIATDITDEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNITIESTQPTTNPGN
Ga0209648_1000710810	3300026551	Grasslands Soil	ADITAEYNKELNPLPTQLLYDTITDHGRNETVVKDAVAHAIQNVTIESAQPTTNPGN
Ga0179587_101050471	3300026557	Vadose Zone Soil	DITEEYNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNISIESPQPSLPKN
Ga0209734_10489162	3300027535	Forest Soil	QLESNKFLQQTAAAIAADYNRELNPGPTQLLYDSITDHSRNEVVVKDGVAHAIKNVAVESPQPASPD
Ga0209331_11015852	3300027603	Forest Soil	IAADYNRKLNPEPTQLLYDNITDHSRNEVAVKDAVAHAIKNVSIESPQPATPD
Ga0209625_10287411	3300027635	Forest Soil	AGTDLQAESNKFLQQTAAAITADYSRELNPGPTQLLYDSITDHSRNEVVVKNAVEHAIKNASIESP
Ga0209217_11940891	3300027651	Forest Soil	DEYNRELNPGPTQLLYDTITDHGRNEVVVNDAVAHAIKNVTVESSQPTTNPGN
Ga0209588_10452633	3300027671	Vadose Zone Soil	MATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALRNTTIESTQPPTNPGN
Ga0209283_100243091	3300027875	Vadose Zone Soil	DLSAESSKMLQEMARDITAEYNRELNPGPTQLLYDAITDHGRNEVVVADAVAHAIKNVTIESPQAVANPGN
Ga0209583_102108022	3300027910	Watersheds	TDITDEYGKELNPGPTQLLYDSITDHGRNEVVVQDAVAHALKNGAIESTQPVTNP
Ga0209698_102911753	3300027911	Watersheds	EYDRELNPEPTQLLYDTITDHSRNEVVVQDAVDHALKNISVESPQPASSN
Ga0209698_103207262	3300027911	Watersheds	ITDEYKKELNPGPTQLLYDSITDHGRNEVVVKDAVTHALKNATIESPPPASNP
Ga0209526_101005071	3300028047	Forest Soil	ATDITDEYNKELNPGPTQLLYDVITDHGRNEVVVKDAVTHALKNTTIESTQPTTKPGN
Ga0209526_103345371	3300028047	Forest Soil	LQQTAAAITADYSRELNPGPTQLLYDSITDHSRNEVVVKNAVEHAIKNASIESP
Ga0209526_107684911	3300028047	Forest Soil	YNKELNPGPTQLLYDAITDHGRNEVVVKDAVAHALKNISIESPQPSLPKN
Ga0137415_101013941	3300028536	Vadose Zone Soil	LQQKAADIGGEYNRELNPGPTQLLYDSITDHGRNEVVVKDAVAHAIKNVAIEATQPATNPGN
Ga0265318_103494662	3300028577	Rhizosphere	QMATEITNQYNKELNPEPTQLLYDAITDHSRNEVVVKDAVASALRDVKLSSTRPVSNPGN
Ga0311369_108602291	3300029910	Palsa	QAAKEITDEYDKELNPGPTQLYYDAVTDHGRNQVVVKDAVAAAIKNLPTAATQLATNPGN
Ga0311339_108324011	3300029999	Palsa	ESTPLLQEMAHEITDEYNKELNPGPAQLLYDSITDHGRNGVASRDAAAHAIQNVAMESNL
Ga0302325_131443042	3300031234	Palsa	IATEITDEYNKELNPEPTQLLYDSITNHGVNDTVAKDAAAYAIRNVVIDSPQPPAAPGN
Ga0265340_105142521	3300031247	Rhizosphere	PAESSKALQKLATDITDEYGRELNPEPAQLLYDSITDHGRNDVVVKNAVDHALKNAAIESTPSPANPRD
Ga0265313_100422643	3300031595	Rhizosphere	NAASNGMLQQMATEITNQYNKELNPEPTQLLYDAITDHSRNEVVVKDAVASALRDVKLSSTRPVSNPGN
Ga0265313_101199731	3300031595	Rhizosphere	LMAHEITATYEKELNPEPAQLLYDSITDHSRNEVVAKDAVAHALKNVTIESARPENSDRRPAT
Ga0265314_101633351	3300031711	Rhizosphere	LKQMAHEITATYGKELNPEPAQLLYDSITDHSRNEVVAKDAVAHALKNVTIESARPENSDRRPAT
Ga0265342_104596272	3300031712	Rhizosphere	EKELNPEPAQLLYDSITDHSRNEVVAKDAVAHALKNVTIESARPENSDRRPAT
Ga0307469_124496641	3300031720	Hardwood Forest Soil	TKMLQQMAAEITDEYKKELNPGPTQLLYDSITDHGRNEVIVKDAVAHALKNTVIESAQPTTDPAN
Ga0307477_108221852	3300031753	Hardwood Forest Soil	LRQMAADITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAIESTQPATPPGN
Ga0307475_101684531	3300031754	Hardwood Forest Soil	QTAREITDEYNRELNPGPTQLLYDAITEHGRNDANVKDAVAHAIKNIAIESTQPSTNPGN
Ga0307478_107454861	3300031823	Hardwood Forest Soil	EAESNKALQKIATEITNEYNKELNPGPTQLLYDSITDHGRNEVVVKDAVASAIKNVAAESPRPAATPGN
Ga0307478_110752971	3300031823	Hardwood Forest Soil	VLQQMATEITDTYNKELNPGPTQLLYDSITDHGRNDVVAKDAVDHAIKNAAIEAPGTTNMGQ
Ga0307479_101572032	3300031962	Hardwood Forest Soil	AADITDEYNKELNPGPTQLLYDAITDHGRNEVIVKDAVAHALKNITIESTQPATNPGH
Ga0307479_102443851	3300031962	Hardwood Forest Soil	MATEITDEYNKELNPAPAQLLYDSITDHGRNEVVVKDAVAHALKNVVIESTPPATIPGN
Ga0307479_104361023	3300031962	Hardwood Forest Soil	KMLQQMATDITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTTIESTQPAANPGN
Ga0307479_107251702	3300031962	Hardwood Forest Soil	VESSKMLQHLATEINDEYSKELNPGPPQRLYDVITDHGKNGVVAKGAVDHALKNIAVE
Ga0307470_111477142	3300032174	Hardwood Forest Soil	SNKVLQKMATEITEEYNKELNPEPAQLLYDTITDHSRNEVVVKDAVAHALKNVSVESRQPATK
Ga0307471_1035866911	3300032180	Hardwood Forest Soil	QQMAGEVTDEYNKELNPGPTQLLYDAITDHGRNDVVVQDAVAHAIKNVTIESPQPTTNPG
Ga0307472_1000224196	3300032205	Hardwood Forest Soil	ADITDEYKKELNPGPTQLLYDAITDHGRNEVVVRDAVAHALKNITIESIQPTTNPGN
Ga0307472_1000226991	3300032205	Hardwood Forest Soil	ITDEYNKELNPGPAQLLYDAITDHGRNEVVVKDAVAHALKNTAIESTQPVTNP
Ga0307472_1007739292	3300032205	Hardwood Forest Soil	MLQQMATEITTEYNKELNPGPAQLLYDSITDHSRNEVVVNDAVAHAFKNTKIESTQPTTHPRN
Ga0307472_1014884541	3300032205	Hardwood Forest Soil	ITDEYNKELNPGPAQLLYDAITDHGRNDVVVKDAVAHALKNTAIASTQPATNP
Ga0335082_115226952	3300032782	Soil	DLDAASRVMLQQLAAEITSEYGKELNPGPTQLLFDSITDHGRNGVVATDGVAHAIKNAPVEAAGPANP
Ga0335083_102475571	3300032954	Soil	LSSGLQQMGNEITDEYNKELNPEPTQLHYDAITDHSRNQVAAQDAVAQVLKDVTVASAQPAANPGN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences