Metagenome / Metatranscriptome Family F052288

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052288
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	58 residues
Representative Sequence	AIRAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Number of Associated Samples	128
Number of Associated Scaffolds	143

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.70 %
% of genes near scaffold ends (potentially truncated)	97.90 %
% of genes from short scaffolds (< 2000 bps)	91.61 %
Associated GOLD sequencing projects	126
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (28.671 % of family members)
Environment Ontology (ENVO)	Unclassified (29.371 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.643 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 143 Family Scaffolds
PF00990	GGDEF	44.76
PF13185	GAF_2	12.59
PF13649	Methyltransf_25	9.09
PF12847	Methyltransf_18	4.20
PF08242	Methyltransf_12	2.80
PF00005	ABC_tran	2.80
PF11959	DUF3473	2.10
PF00009	GTP_EFTU	2.10
PF13924	Lipocalin_5	2.10
PF00164	Ribosom_S12_S23	1.40
PF01593	Amino_oxidase	0.70
PF13586	DDE_Tnp_1_2	0.70
PF01522	Polysacc_deac_1	0.70
PF12773	DZR	0.70
PF00338	Ribosomal_S10	0.70
PF03144	GTP_EFTU_D2	0.70

COG ID	Name	Functional Category	% Frequency in 143 Family Scaffolds
COG0051	Ribosomal protein S10	Translation, ribosomal structure and biogenesis [J]	0.70
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	90.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	83.22 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.80 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	83.22 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.40 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	83.22 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.40 %
Epibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Epibacterium	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	83.22 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.40 %
unclassified Epibacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Epibacterium → unclassified Epibacterium	0.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	83.22 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.40 %
Epibacterium sp. Ofav1-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Epibacterium → unclassified Epibacterium → Epibacterium sp. Ofav1-8	0.70 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201DKFBS	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
2170459007\|GJ8XV2H01AGWAR	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300000886\|AL3A1W_1312836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300000956\|JGI10216J12902_100237201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	811	Open in IMG/M
3300000956\|JGI10216J12902_105425854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300000956\|JGI10216J12902_106877208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1080	Open in IMG/M
3300000956\|JGI10216J12902_110055758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300001305\|C688J14111_10156835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	700	Open in IMG/M
3300001359\|A3035W6_1004963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300001537\|A2065W1_10337952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300001991\|JGI24743J22301_10132034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300002245\|JGIcombinedJ26739_101294506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300002568\|C688J35102_119880936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	802	Open in IMG/M
3300002568\|C688J35102_120687320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1354	Open in IMG/M
3300003203\|JGI25406J46586_10208970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300004114\|Ga0062593_101583451	All Organisms → cellular organisms → Bacteria → Terrabacteria group	710	Open in IMG/M
3300004114\|Ga0062593_102447480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300004114\|Ga0062593_102855303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300004156\|Ga0062589_101553271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300004479\|Ga0062595_100079493	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300004643\|Ga0062591_101115570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300005146\|Ga0066817_1024983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300005164\|Ga0066815_10064055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300005167\|Ga0066672_10968606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300005181\|Ga0066678_11009690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300005187\|Ga0066675_11347998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300005336\|Ga0070680_101426382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300005343\|Ga0070687_100897670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300005353\|Ga0070669_101319677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300005434\|Ga0070709_11294702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300005435\|Ga0070714_102126426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300005437\|Ga0070710_10332238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1001	Open in IMG/M
3300005444\|Ga0070694_100340189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1160	Open in IMG/M
3300005445\|Ga0070708_100517551	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300005447\|Ga0066689_10729337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300005467\|Ga0070706_101621923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300005546\|Ga0070696_101408136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300005546\|Ga0070696_101988112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300005553\|Ga0066695_10642195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300005563\|Ga0068855_101122124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	821	Open in IMG/M
3300005568\|Ga0066703_10725129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300005569\|Ga0066705_10432990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	824	Open in IMG/M
3300005617\|Ga0068859_100124155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2650	Open in IMG/M
3300006574\|Ga0074056_10017602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	944	Open in IMG/M
3300006579\|Ga0074054_12173585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1304	Open in IMG/M
3300006755\|Ga0079222_11370335	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652	Open in IMG/M
3300006847\|Ga0075431_101427301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300006871\|Ga0075434_100706540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1025	Open in IMG/M
3300009012\|Ga0066710_100442469	All Organisms → cellular organisms → Bacteria	1947	Open in IMG/M
3300009094\|Ga0111539_11443398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	798	Open in IMG/M
3300009137\|Ga0066709_104039418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300009818\|Ga0105072_1102460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300010325\|Ga0134064_10339892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300010336\|Ga0134071_10587214	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010366\|Ga0126379_12437464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
3300010395\|Ga0058701_10636234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300010397\|Ga0134124_10464983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1217	Open in IMG/M
3300010398\|Ga0126383_11957627	All Organisms → cellular organisms → Bacteria → Terrabacteria group	674	Open in IMG/M
3300010403\|Ga0134123_12361307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300011992\|Ga0120146_1072800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300012189\|Ga0137388_10462585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1177	Open in IMG/M
3300012199\|Ga0137383_10625363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300012207\|Ga0137381_11592451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300012208\|Ga0137376_10204376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1709	Open in IMG/M
3300012209\|Ga0137379_10364985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1353	Open in IMG/M
3300012209\|Ga0137379_10534816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1080	Open in IMG/M
3300012210\|Ga0137378_11515440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300012211\|Ga0137377_11149488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706	Open in IMG/M
3300012353\|Ga0137367_10105805	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300012353\|Ga0137367_10845927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300012358\|Ga0137368_10797381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300012360\|Ga0137375_10897230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300012362\|Ga0137361_10936430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300012400\|Ga0134048_1369182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300012913\|Ga0157298_10259714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300012918\|Ga0137396_10035909	All Organisms → cellular organisms → Bacteria	3317	Open in IMG/M
3300012944\|Ga0137410_10171206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1667	Open in IMG/M
3300012951\|Ga0164300_10878936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300012955\|Ga0164298_10730213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300012957\|Ga0164303_11328677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300012958\|Ga0164299_10332991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	947	Open in IMG/M
3300012960\|Ga0164301_11693125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300012961\|Ga0164302_10611196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300012987\|Ga0164307_10812851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300012988\|Ga0164306_10040324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2754	Open in IMG/M
3300013105\|Ga0157369_11577021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668	Open in IMG/M
3300013296\|Ga0157374_10020667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5846	Open in IMG/M
3300015200\|Ga0173480_10527919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300015209\|Ga0167629_1125794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300015373\|Ga0132257_100825367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1159	Open in IMG/M
3300015374\|Ga0132255_100305748	All Organisms → cellular organisms → Bacteria	2290	Open in IMG/M
3300017659\|Ga0134083_10562760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Epibacterium → unclassified Epibacterium → Epibacterium sp. Ofav1-8	517	Open in IMG/M
3300018431\|Ga0066655_10983787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300018468\|Ga0066662_10720834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300019255\|Ga0184643_1087140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	981	Open in IMG/M
3300019279\|Ga0184642_1696989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300019362\|Ga0173479_10885656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300019866\|Ga0193756_1025257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	834	Open in IMG/M
3300020006\|Ga0193735_1178650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300020012\|Ga0193732_1081076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300020015\|Ga0193734_1015384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1444	Open in IMG/M
3300020018\|Ga0193721_1046677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1142	Open in IMG/M
3300021445\|Ga0182009_10638970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300025921\|Ga0207652_11311089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300025931\|Ga0207644_10457520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300025941\|Ga0207711_10063781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3181	Open in IMG/M
3300026035\|Ga0207703_11658157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300026067\|Ga0207678_10074836	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300026121\|Ga0207683_11538469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300026523\|Ga0209808_1283052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300027561\|Ga0209887_1016167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1853	Open in IMG/M
3300027561\|Ga0209887_1107792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300027787\|Ga0209074_10444189	All Organisms → cellular organisms → Bacteria → Terrabacteria group	552	Open in IMG/M
3300027821\|Ga0209811_10002356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6257	Open in IMG/M
3300028047\|Ga0209526_10600308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300028704\|Ga0307321_1039059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300028707\|Ga0307291_1038346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1136	Open in IMG/M
3300028711\|Ga0307293_10254401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300028714\|Ga0307309_10002243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2917	Open in IMG/M
3300028715\|Ga0307313_10195291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300028716\|Ga0307311_10074316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	928	Open in IMG/M
3300028718\|Ga0307307_10124253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300028755\|Ga0307316_10211147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	700	Open in IMG/M
3300028784\|Ga0307282_10071794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1574	Open in IMG/M
3300028784\|Ga0307282_10077247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1520	Open in IMG/M
3300028784\|Ga0307282_10458846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300028787\|Ga0307323_10127519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	916	Open in IMG/M
3300028807\|Ga0307305_10076431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1545	Open in IMG/M
3300028807\|Ga0307305_10160524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1037	Open in IMG/M
3300028819\|Ga0307296_10838269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300028872\|Ga0307314_10042491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1118	Open in IMG/M
3300028876\|Ga0307286_10004997	All Organisms → cellular organisms → Bacteria	3945	Open in IMG/M
3300028878\|Ga0307278_10425554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300028881\|Ga0307277_10483089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300028884\|Ga0307308_10484833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300028885\|Ga0307304_10201603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	851	Open in IMG/M
3300028885\|Ga0307304_10546950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300031200\|Ga0307496_10022982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	916	Open in IMG/M
3300031226\|Ga0307497_10364158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300031858\|Ga0310892_10604911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300032074\|Ga0308173_12255991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300032205\|Ga0307472_101786407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300033412\|Ga0310810_10148928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2721	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.41%
Host-Associated	Host-Associated	12.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.01%
Plants	Host-Associated → Plants	12.59%
Aquatic	Environmental → Aquatic	1.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.29%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.59%
Freshwater	Environmental → Aquatic → Freshwater	1.40%
Phylloplane	Host-Associated → Plants → Phylloplane	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.73%
Loam	Environmental → Terrestrial → Soil → Loam	11.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.10%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.10%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.40%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.70%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.10%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.10%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.40%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.70%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	28.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.10%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.10%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.40%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.40%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.40%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.40%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.40%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.70%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001359	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015209	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_04968120	2170459007	Grass Soil	RPIGPPLPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
L02_00597290	2170459007	Grass Soil	AREAIRAALKAQEREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
AL3A1W_13128362	3300000886	Permafrost	EAIRAALMAQEREDRYPSWLASAQQAAFPEAICWRDQFPETGEVDLTNYLPFLALTS*
JGI10216J12902_1002372011	3300000956	Soil	EAYFPTWLTSAQKAAFRDAICWRDQFPELGEVDLTNYLPFLSLTS*
JGI10216J12902_1054258541	3300000956	Soil	SPQPLSALPLASVRTAIRSALMAQAREDRFSAWLMSAQRAALSEATCWRDQMPEPSEVDLTNFLPFLALTG*
JGI10216J12902_1068772081	3300000956	Soil	GPPVPLGSVPIGDVSQAIRVALAAQAQEDRYPTWLTAAQRAAFPLAICWRDQLPQVGEVDLTNYMPFLALTS*
JGI10216J12902_1100557581	3300000956	Soil	DVSEGIRAALAAQAREDRYPTWLTAAQRAAFPLATCWRDQLPEVGDVDLTNYMPFLALTS
C688J14111_101568351	3300001305	Soil	IEQAREAHFPAWLTAAQKSSFPQAICWRDQFPELGEVDLTNYLPFLALTQ*
A3035W6_10049632	3300001359	Permafrost	PLYSSAASDVYKRQLPLSNAREAIRAALIAQAREDRYPTWLADAQQAAFPEAICWRDQMPETGEVDLTNYLPFLALTS*
A2065W1_103379522	3300001537	Permafrost	SIRRQRQMCIRDRLSNAREAIRAALNAQAREDRYPTWLTSAQQAAFPEAICWRDQMPEQGEVDLTNYLPFLALTS*
JGI24743J22301_101320341	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	EAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
JGIcombinedJ26739_1012945062	3300002245	Forest Soil	RAALMAQAQEDRYPTWLTSAQQAAFPEAICWRDLMPEQGEVDLTNYLPFLALTS*
C688J35102_1198809361	3300002568	Soil	VRSSIRAALIEQAREAHFPAWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
C688J35102_1206873202	3300002568	Soil	REDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
JGI25406J46586_102089702	3300003203	Tabebuia Heterophylla Rhizosphere	PPKPLSSLPLGSVRGAIRSALVEQAREEHFPIWLTAAQKAALPEATCWRDQFPELGEVDLTNYLSFLALTQ*
Ga0062593_1015834511	3300004114	Soil	LSTLPLGSVRASIRSALNEQAREDHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0062593_1024474801	3300004114	Soil	RAALAAQAREDRYPTWLTAAQRAAFPLATCWRDQLPEVGDVDLTNYMPFLALTS*
Ga0062593_1028553031	3300004114	Soil	ALVAQAREDRYPTWLASAQQAAFPDAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0062589_1015532712	3300004156	Soil	DQAREEHFPAWLTAAQKAAFPQAICWRDQLPELGEVDLTNYLPFLALTQ*
Ga0062595_1000794931	3300004479	Soil	LAAQAREDRYPTWLTAAQRAAFPQAICWRDQLPELGDVDLTNYMPFLALTS*
Ga0062591_1011155702	3300004643	Soil	SVRGSIRSALIEQAREDHFPVWLTAAQKAAFPEATCWRDQFPELGEVDLTNYLPFLALKQ
Ga0066817_10249831	3300005146	Soil	GTLPLGNVREAIRAALLAQAREDRYPSWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0066815_100640551	3300005164	Soil	LLAQAREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0066672_109686062	3300005167	Soil	AQAREEQFPSWLNAAQRAAIAEAVCWRDQMPQLGEVDLTNYLPFLALSF*
Ga0066678_110096902	3300005181	Soil	HFPAWLMSAQKAALLEAICWRDQLPELGEVDLTNYLPFLAVTG*
Ga0066675_113479982	3300005187	Soil	LPLGNAREAIRAALMTQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0070680_1014263822	3300005336	Corn Rhizosphere	LGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0070687_1008976702	3300005343	Switchgrass Rhizosphere	LGSLPITNVGTSIRTALIAQAREDRFPNWLTTEQLRQFSEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0070669_1013196772	3300005353	Switchgrass Rhizosphere	LPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0070709_112947021	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	QAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0070714_1021264262	3300005435	Agricultural Soil	LGPPKTLASLPLDSVRSSIRSALIEQAREAHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0070710_103322382	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	SVRSSIRSALIEQAREAHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0070694_1003401891	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0070708_1005175513	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PLPLGSVPLGNVRLGIRAALMAQSRGDHFPSWLNASQQAALPKAICWRDQFPQLGEVDLANYLPFLALTQ*
Ga0066689_107293371	3300005447	Soil	EDRFPTWLMSAQMTALSEAICWRDQMPELSEVDLTNYLPFLAVTG*
Ga0070706_1016219231	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPALGEVDLTNYLPFLALSS*
Ga0070696_1014081362	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ALMAQAREDRYPTWLASAQQAAFGEAVCWRDQMPALGEVDLTNYLPFLALTS*
Ga0070696_1019881121	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	NVREAIRAALMAQAREDRYPTWLASAQQAAFQEAICWRDQMPELGEVDLTNYLPFLALTS
Ga0066695_106421951	3300005553	Soil	AIRSALMAQAREDRFSAWLMSAQRAALSEATCWRDQMPEPSEVDLTNYLPFLALTG*
Ga0068855_1011221241	3300005563	Corn Rhizosphere	AQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0066703_107251291	3300005568	Soil	LMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0066705_104329902	3300005569	Soil	KPLGSLPLGNVRLAIRSALMDQAREEHFPVWLTAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0068859_1001241551	3300005617	Switchgrass Rhizosphere	LPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0074056_100176022	3300006574	Soil	LGNVREAIRAALLAQAREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0074054_121735852	3300006579	Soil	ARQAIRAALMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0079222_113703352	3300006755	Agricultural Soil	LGPPKTLSTLPLGSVRASIRSALNEQAREDHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0075431_1014273012	3300006847	Populus Rhizosphere	ALIDQAREEHFPAWLTAAQKAAFPQAICWRDQLPELGEVDLTNYLPFLALTQ*
Ga0075434_1007065402	3300006871	Populus Rhizosphere	ASIRTALIEQAREEHFPVWLTAAQKAAFPEATCWRDQFPELGEVDLTNYLSFLALTQ*
Ga0066710_1004424693	3300009012	Grasslands Soil	MTQEREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0111539_114433982	3300009094	Populus Rhizosphere	AQAREDRFPNWLTTEQLRQFSEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0066709_1040394182	3300009137	Grasslands Soil	LGNAREAIRAALMTQEREDRYPTWLASAQQAAFPEAICWRDQMPETGEVDLTNYLPFLALTS*
Ga0105072_11024601	3300009818	Groundwater Sand	LSIGNAQQAIRAALIAQAREARFPTWLTAAQKSAFPEAICWRDQLPELGEVDLTNYLPFLALTS*
Ga0134064_103398921	3300010325	Grasslands Soil	IRGALIEQAREEHFPVWLSAAQKAAFPEALCWRDQFPELGEVDLTNYLPFLALTQ*
Ga0134071_105872141	3300010336	Grasslands Soil	MTQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0126379_124374642	3300010366	Tropical Forest Soil	GPPRTLSSLPLGSVRPSIRSALIEQAREDHFPVWLAAAQKAAFPEATCWRDQFPELGEVDLTNYLPFAALTQ*
Ga0058701_106362342	3300010395	Agave	PIGDVSQGIRAALAAQAREDRYPTWLTAAQRAAFPLATCWRDQMPQVGDVDLTNYMPFLALTS*
Ga0134124_104649831	3300010397	Terrestrial Soil	PLGPPLPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0126383_119576272	3300010398	Tropical Forest Soil	GSVRPSIRSALIEQAREDHFPVWLAAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0134123_123613072	3300010403	Terrestrial Soil	REDRFPNWLTTEQLRQFSEAICWRDQFPELGEGDLTNYLPFLALTS*
Ga0120146_10728002	3300011992	Permafrost	EDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFVALTS*
Ga0137388_104625851	3300012189	Vadose Zone Soil	IRAALMTQEREDRYPSWLASAQQAAFPEAICWRDQFPETGEVDLTNYLPFLALTS*
Ga0137383_106253632	3300012199	Vadose Zone Soil	GTLPLGNAREAIRAALKAQEREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0137381_115924511	3300012207	Vadose Zone Soil	REAIRAALMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0137376_102043761	3300012208	Vadose Zone Soil	IRAALMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0137379_103649851	3300012209	Vadose Zone Soil	LMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEMGEVDLTNYLPFLALTS*
Ga0137379_105348162	3300012209	Vadose Zone Soil	LGNAREAIRAALMAQEREDHYPAWLASAQRAASPEAICWRDQLPEEGEVDLTNYLPFLALTS*
Ga0137378_115154401	3300012210	Vadose Zone Soil	IRATLIEQAREAHFPAWLTAAQKSSFPQAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0137377_111494882	3300012211	Vadose Zone Soil	PLGPPLPLGTLPLSNAREAIRAALMAQAREDRYPTWLADAQQAAFPEAICWRDQMPEAGEVDLTNYLPFLALTS*
Ga0137367_101058051	3300012353	Vadose Zone Soil	PPLPLGSLPLGNVRTAIRAALMEQAREEHFPVWLTAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0137367_108459272	3300012353	Vadose Zone Soil	LPLGNVRLSIRTALIEQAREEHFPVWLTAAQNAAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0137368_107973811	3300012358	Vadose Zone Soil	IRAALIAQAREDRFPGWLTSAQEAAFPEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0137375_108972301	3300012360	Vadose Zone Soil	RTAIRAALMEQAREEHFPVWLTAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTQ*
Ga0137361_109364302	3300012362	Vadose Zone Soil	IRAALKAQEREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0134048_13691821	3300012400	Grasslands Soil	AIRSALMAQAREDRFSAWLMSAQRAALSEATCWRDQMPEPSEVDLANYLPFLALTG*
Ga0157298_102597142	3300012913	Soil	ALVAQAREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0137396_100359093	3300012918	Vadose Zone Soil	GPPLPLGTLPLGNAREAIRAALMAQEREDRYPAWLASAQQAAFPEAICWRDLMPVRGEVEGF*
Ga0137410_101712062	3300012944	Vadose Zone Soil	LPLGTLPLGNAREAIRVALMAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS*
Ga0164300_108789362	3300012951	Soil	RAALMAQAREDRYPTWLASAQQAAFGEAICWRDQMPALGEVDLTNYLPFLALTS*
Ga0164298_107302131	3300012955	Soil	STRLAIRSALIEQAREEHFPVWLTAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0164303_113286771	3300012957	Soil	DRYPAWLAAAQQAAFPEAICWRDQMPEMGEVDLTNYLPFLALTS*
Ga0164299_103329913	3300012958	Soil	DQAREEHFPAWLTAAQKSAFPEAMCWRDQFPELGEVDLTNYLPFLALTQ*
Ga0164301_116931252	3300012960	Soil	GPPLPLGTLPLGNVREAIRAALIAQAREDRSPSWLASAQQAAFPEAICWRDQMPEMGEVDLTNYLPFLALTS*
Ga0164302_106111961	3300012961	Soil	LEDVRAAIRAALLAQAREDRSPTWLASAQQAAFPEAICWRDQMPELGDVDLTNYLPFLALTS*
Ga0164307_108128512	3300012987	Soil	LLAQAREDRYPTWLASAQQAAFPEAICWRDQMPELGDVDLTNYLPFLALTS*
Ga0164306_100403241	3300012988	Soil	VRPLGPPLPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0157369_115770211	3300013105	Corn Rhizosphere	REAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0157374_100206671	3300013296	Miscanthus Rhizosphere	RAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0173480_105279191	3300015200	Soil	EAIRAALVAQAREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0167629_11257942	3300015209	Glacier Forefield Soil	ALPLSNAREAIRAALIAQAREDRYPTWLASAQQAAFPDAICWRDQMPEKGEVDLTNYLPFLALTS*
Ga0132257_1008253672	3300015373	Arabidopsis Rhizosphere	LRVILEEDRFPTWLTTEQLRQFSEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0132255_1003057484	3300015374	Arabidopsis Rhizosphere	VRTSIRTALVAQAREDRFPTWLTTEQLRQFSEAICWRDQFPELGEVDLTNYLPFLALTS*
Ga0134083_105627601	3300017659	Grasslands Soil	RPLGPPKTLASLPLGSVRSSIRAALIEQAREAHFPAWLTAAQKYAFPEAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0066655_109837872	3300018431	Grasslands Soil	AREDRFPTWLMSAQRAALSEAICWRDQMPELGEVDLTNYLPFLAVTG
Ga0066662_107208341	3300018468	Grasslands Soil	GEAREEHFPAWLTAAQKAAFPQAICWRDQFPEVGEVDLTNYLPFLVLTSSPE
Ga0184643_10871402	3300019255	Groundwater Sediment	NAREAIRAALMTQEREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0184642_16969893	3300019279	Groundwater Sediment	REEHFPAWLTAAQKAAFPEAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0173479_108856562	3300019362	Soil	REEHFPVWLTAAQKAAFPEAICWRDQFPEVGEVDLTNYLPFLALTQ
Ga0193756_10252571	3300019866	Soil	AQAREDRYPAWLAAAQQGAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0193735_11786502	3300020006	Soil	DRYPNWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0193732_10810761	3300020012	Soil	PLPLSALPLGNVREAIRAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTF
Ga0193734_10153841	3300020015	Soil	RAALVAQAREDRYPNWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0193721_10466771	3300020018	Soil	QAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLGLTS
Ga0182009_106389701	3300021445	Soil	LPLGSVRSSIRSALIDQARQEHFPVWLAAAQKAAFPQAICWRDQFPEIGEVDLTNYLPFLALTS
Ga0207652_113110891	3300025921	Corn Rhizosphere	RYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0207644_104575202	3300025931	Switchgrass Rhizosphere	KTIASLPLGAVRASIRTALIGQAREDHFQVWLTAAQKAAFPEATCWRDQFPELGEVDLTNYLPFLALTQ
Ga0207711_100637815	3300025941	Switchgrass Rhizosphere	LGPPLPLGTLPLGNVREAIRAALLAQAREDRYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0207703_116581571	3300026035	Switchgrass Rhizosphere	QVRPLGPPLPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0207678_100748361	3300026067	Corn Rhizosphere	VRPLGPPLPLGTLPLGNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0207683_115384691	3300026121	Miscanthus Rhizosphere	RYPTWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0209808_12830521	3300026523	Soil	PQPLATLPLANVRTAIRTALMAQAREDRFPTWLMSAQMTALSEAICWRDQMPELSEVDLTNYLPFLAVTG
Ga0209887_10161671	3300027561	Groundwater Sand	LLGALPLADVRHAIRAALIAHAREAHFPTWLTSAQESSFPEAICWRDQLPELGEVDLTNYLPFLALTS
Ga0209887_11077921	3300027561	Groundwater Sand	LIAQAREARFPTWLTAAQKSAFPEAICWRDQLPELGEVDLTNYLPFLALTS
Ga0209074_104441891	3300027787	Agricultural Soil	LGPPKTLSTLPLGSVRASIRSALNEQAREDHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0209811_100023561	3300027821	Surface Soil	GNVREAIRAALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALT
Ga0209526_106003081	3300028047	Forest Soil	LGKAREAIRAALMAQAQEDRYPTWLTSAQQAAFPEAICWRDLMPEQGEVDLTNYLPFLALTS
Ga0307321_10390592	3300028704	Soil	RAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307291_10383461	3300028707	Soil	MAQEREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALSS
Ga0307293_102544012	3300028711	Soil	RYPTWLTSAQQAAFPEAICWRDQMPEMGEVDLTNYLPFLALTS
Ga0307309_100022435	3300028714	Soil	LVAQAREDRYPNWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307313_101952912	3300028715	Soil	SALPLGNVREAIRAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307311_100743162	3300028716	Soil	TLPLGNAREAIRAALMTQEREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307307_101242532	3300028718	Soil	IRTALIEQAREEHFPDWLTAAQKAAFPEAICWRDQLPELGEVDLTNYLPFLALTQ
Ga0307316_102111472	3300028755	Soil	PLPLSALPLGNVREAIRAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307282_100717942	3300028784	Soil	PLPLGTLPLGNAREAIRAALMTQEREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307282_100772471	3300028784	Soil	QAREDRYPTWLASAQQAAFPEAICWRDQMPEIGEVDLTNYLPFLALTS
Ga0307282_104588462	3300028784	Soil	ALVAQAQEARFPNWLMAAQKSAMPEAICWRDQLPQLGEVDLTNYLPFLALTS
Ga0307323_101275191	3300028787	Soil	RAALVAQAREDRYPTWLASAQQGAFPEAICWRDQMPEIGEVDLTNYLPFLALTS
Ga0307305_100764311	3300028807	Soil	PLGSLPLGNVRASIRTALIEQAREEHFPDWLTAAQKAAFPEAICWRDQLPELGEVDLTNYLPFLALTQ
Ga0307305_101605241	3300028807	Soil	RYPTWLADAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307296_108382692	3300028819	Soil	PPLPLGTLPLGNAREAIRAALMTQEREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307314_100424911	3300028872	Soil	AIRAALIAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307286_100049976	3300028876	Soil	NVRASIRTALIEQAREEHFPDWLTAAQKAAFPEAICWRDQLPELGEVDLTNYLPFLALTQ
Ga0307278_104255542	3300028878	Soil	GPPLPLGNVREAIRAALLAQAREDRYPTWLAGAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307277_104830892	3300028881	Soil	EREDRYPTWLTSAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307308_104848331	3300028884	Soil	EARFPNWLMTAQRSAFPEAICWRDQLPELGEVDLTNYLPFLALTS
Ga0307304_102016031	3300028885	Soil	REEHFPDWLTAAQKAAFPEAICWRDQLPELGEVDLTNYLPFLALTQ
Ga0307304_105469501	3300028885	Soil	DRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307496_100229822	3300031200	Soil	EAIRAALVAQAREDRYPTWLASAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0307497_103641582	3300031226	Soil	AALVAQAREDRYPTWLAAAQQAAFPEAICWRDQMPELGEVDLTNYLPFLALTS
Ga0310892_106049112	3300031858	Soil	ALLAQAREDRYPAWLAAAQQAAFPEAICWRDQMPEKGEVDLTNYLPFLALTS
Ga0308173_122559912	3300032074	Soil	QAREAHFPAWLTAAQKSAFPQAICWRDQFPELGEVDLTNYLPFLALTQ
Ga0307472_1017864071	3300032205	Hardwood Forest Soil	EREDRYPAWLAAAQQAAFPEAICWRDQMPERGEVDLTNYLPFLTLTS
Ga0310810_101489281	3300033412	Soil	IRSALNEQAREDHFPVWLTAAQKSAFPEAICWRDQFPELGEVDLTNYLPFLALTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052288

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences