Metagenome / Metatranscriptome Family F052528

Basic Information
Family ID	F052528
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	42 residues
Representative Sequence	VGRVTSAVPGLALAYVRVEVPDDAELSVEGRPARLR
Number of Associated Samples	124
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.77 %
% of genes near scaffold ends (potentially truncated)	91.55 %
% of genes from short scaffolds (< 2000 bps)	85.92 %
Associated GOLD sequencing projects	121
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (52.817 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.422 % of family members)
Environment Ontology (ENVO)	Unclassified (23.239 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.408 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 9.38% Coil/Unstructured: 90.62%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF02653	BPD_transp_2	4.93
PF08669	GCV_T_C	4.23
PF04239	DUF421	4.23
PF12697	Abhydrolase_6	4.23
PF02423	OCD_Mu_crystall	3.52
PF00005	ABC_tran	2.11
PF00291	PALP	2.11
PF13783	DUF4177	1.41
PF01565	FAD_binding_4	1.41
PF05974	DUF892	1.41
PF13463	HTH_27	1.41
PF08352	oligo_HPY	1.41
PF01047	MarR	1.41
PF02608	Bmp	0.70
PF13489	Methyltransf_23	0.70
PF00535	Glycos_transf_2	0.70
PF14362	DUF4407	0.70
PF00588	SpoU_methylase	0.70
PF02371	Transposase_20	0.70
PF02836	Glyco_hydro_2_C	0.70
PF00211	Guanylate_cyc	0.70
PF01571	GCV_T	0.70
PF05014	Nuc_deoxyrib_tr	0.70
PF13692	Glyco_trans_1_4	0.70
PF04525	LOR	0.70
PF13673	Acetyltransf_10	0.70
PF07077	DUF1345	0.70
PF05872	HerA_C	0.70
PF00082	Peptidase_S8	0.70
PF14329	DUF4386	0.70
PF02416	TatA_B_E	0.70
PF07508	Recombinase	0.70
PF00561	Abhydrolase_1	0.70
PF07452	CHRD	0.70
PF01614	IclR	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	4.23
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	3.52
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.41
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	0.70
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.70
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	0.70
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.70
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.70
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	0.70
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.70
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.70
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.70
COG3250	Beta-galactosidase/beta-glucuronidase	Carbohydrate transport and metabolism [G]	0.70
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.70
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.70
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.70
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.70

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.82 %
Unclassified	root	N/A	47.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.82 %
Unclassified	root	N/A	47.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.82 %
Unclassified	root	N/A	47.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.99 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.42 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.82 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.41 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	17.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.41 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.70 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	17.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.41 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.70 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	17.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.41 %
Kineococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus	0.70 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	17.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.41 %
Frankia alni	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia alni	0.70 %
Kineococcus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus rhizosphaerae	0.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	17.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.41 %
Frankia alni ACN14a	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia alni → Frankia alni ACN14a	0.70 %
Kineococcus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus rhizosphaerae	0.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.70 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090004\|P1_DRAFT_NODE_49947_len_975_cov_7_065641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1025	Open in IMG/M
2170459006\|GBPF9FW02HW4H6	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300001686\|C688J18823_10557418	Not Available	733	Open in IMG/M
3300003321\|soilH1_10095681	All Organisms → cellular organisms → Bacteria	2210	Open in IMG/M
3300004153\|Ga0063455_100211524	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300005093\|Ga0062594_103362842	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005331\|Ga0070670_101061577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300005335\|Ga0070666_11071933	Not Available	599	Open in IMG/M
3300005366\|Ga0070659_101573189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300005438\|Ga0070701_10704526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300005439\|Ga0070711_100570631	Not Available	941	Open in IMG/M
3300005526\|Ga0073909_10323812	Not Available	707	Open in IMG/M
3300005535\|Ga0070684_102205549	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005575\|Ga0066702_10093105	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300005840\|Ga0068870_11021689	Not Available	591	Open in IMG/M
3300005840\|Ga0068870_11306544	Not Available	529	Open in IMG/M
3300005894\|Ga0075270_1071037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300005902\|Ga0075273_10100751	Not Available	574	Open in IMG/M
3300006034\|Ga0066656_10805308	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300006755\|Ga0079222_10154280	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300006876\|Ga0079217_11494125	Not Available	534	Open in IMG/M
3300006914\|Ga0075436_100765664	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300006954\|Ga0079219_11018162	All Organisms → cellular organisms → Bacteria → Terrabacteria group	690	Open in IMG/M
3300007076\|Ga0075435_100058687	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300009012\|Ga0066710_100328687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2251	Open in IMG/M
3300009012\|Ga0066710_100363502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2144	Open in IMG/M
3300009012\|Ga0066710_102972486	Not Available	661	Open in IMG/M
3300009098\|Ga0105245_11119455	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300009098\|Ga0105245_12181724	Not Available	608	Open in IMG/M
3300009098\|Ga0105245_12715572	Not Available	548	Open in IMG/M
3300009147\|Ga0114129_13211276	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300009162\|Ga0075423_10349848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1550	Open in IMG/M
3300009174\|Ga0105241_11269554	Not Available	700	Open in IMG/M
3300009520\|Ga0116214_1354075	Not Available	568	Open in IMG/M
3300009553\|Ga0105249_12189602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300009789\|Ga0126307_11147893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300010037\|Ga0126304_11037125	Not Available	560	Open in IMG/M
3300010039\|Ga0126309_10583263	Not Available	701	Open in IMG/M
3300010041\|Ga0126312_10842295	Not Available	666	Open in IMG/M
3300010136\|Ga0127447_1177125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
3300010147\|Ga0126319_1002330	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300010147\|Ga0126319_1417666	All Organisms → cellular organisms → Bacteria → Terrabacteria group	559	Open in IMG/M
3300010361\|Ga0126378_12169020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300010371\|Ga0134125_11492471	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300010373\|Ga0134128_12336803	Not Available	589	Open in IMG/M
3300010397\|Ga0134124_12789567	Not Available	532	Open in IMG/M
3300012008\|Ga0120174_1036795	Not Available	1427	Open in IMG/M
3300012208\|Ga0137376_10654947	All Organisms → cellular organisms → Bacteria → Terrabacteria group	907	Open in IMG/M
3300012208\|Ga0137376_11625539	Not Available	537	Open in IMG/M
3300012354\|Ga0137366_11126731	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012386\|Ga0134046_1159023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300012396\|Ga0134057_1330464	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300012489\|Ga0157349_1007232	Not Available	823	Open in IMG/M
3300012492\|Ga0157335_1010032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300012515\|Ga0157338_1026164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300012951\|Ga0164300_10549603	Not Available	671	Open in IMG/M
3300012960\|Ga0164301_11894171	Not Available	504	Open in IMG/M
3300012961\|Ga0164302_11277338	Not Available	592	Open in IMG/M
3300012971\|Ga0126369_13321718	Not Available	527	Open in IMG/M
3300012985\|Ga0164308_12101090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia alni → Frankia alni ACN14a	526	Open in IMG/M
3300013104\|Ga0157370_10785782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300014157\|Ga0134078_10187680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	836	Open in IMG/M
3300014166\|Ga0134079_10619531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300014301\|Ga0075323_1061203	Not Available	752	Open in IMG/M
3300014307\|Ga0075304_1130497	Not Available	592	Open in IMG/M
3300014325\|Ga0163163_12445226	Not Available	580	Open in IMG/M
3300014969\|Ga0157376_10820224	Not Available	944	Open in IMG/M
3300014969\|Ga0157376_12519809	Not Available	554	Open in IMG/M
3300015356\|Ga0134073_10416443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300015373\|Ga0132257_100264184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2059	Open in IMG/M
3300016341\|Ga0182035_11323173	Not Available	645	Open in IMG/M
3300017657\|Ga0134074_1115825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	925	Open in IMG/M
3300017961\|Ga0187778_10594366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	741	Open in IMG/M
3300017973\|Ga0187780_10828065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	670	Open in IMG/M
3300018032\|Ga0187788_10414862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300018061\|Ga0184619_10146757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1075	Open in IMG/M
3300018071\|Ga0184618_10284000	Not Available	703	Open in IMG/M
3300018081\|Ga0184625_10155130	Not Available	1196	Open in IMG/M
3300018422\|Ga0190265_12129619	Not Available	665	Open in IMG/M
3300018431\|Ga0066655_10917448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300018431\|Ga0066655_11067317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300018466\|Ga0190268_11113073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300018476\|Ga0190274_11801138	Not Available	707	Open in IMG/M
3300018482\|Ga0066669_10276691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1346	Open in IMG/M
3300019356\|Ga0173481_10670112	Not Available	556	Open in IMG/M
3300019361\|Ga0173482_10310761	Not Available	698	Open in IMG/M
3300021415\|Ga0193694_1044320	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300021510\|Ga0222621_1117644	Not Available	565	Open in IMG/M
3300025900\|Ga0207710_10087101	All Organisms → cellular organisms → Bacteria → Acidobacteria	1456	Open in IMG/M
3300025935\|Ga0207709_10508299	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300025939\|Ga0207665_10015704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4970	Open in IMG/M
3300025939\|Ga0207665_10409505	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300025944\|Ga0207661_10469551	Not Available	1148	Open in IMG/M
3300025993\|Ga0208415_1009589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	903	Open in IMG/M
3300026089\|Ga0207648_10701646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	938	Open in IMG/M
3300026095\|Ga0207676_12573057	Not Available	505	Open in IMG/M
3300026142\|Ga0207698_12589153	Not Available	517	Open in IMG/M
3300026277\|Ga0209350_1131962	Not Available	562	Open in IMG/M
3300027787\|Ga0209074_10571806	Not Available	500	Open in IMG/M
3300027909\|Ga0209382_10108779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3242	Open in IMG/M
3300028556\|Ga0265337_1130694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300028710\|Ga0307322_10144313	Not Available	631	Open in IMG/M
3300028714\|Ga0307309_10107006	Not Available	673	Open in IMG/M
3300028716\|Ga0307311_10123411	Not Available	735	Open in IMG/M
3300028716\|Ga0307311_10197402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	589	Open in IMG/M
3300028719\|Ga0307301_10063656	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300028720\|Ga0307317_10012214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2565	Open in IMG/M
3300028720\|Ga0307317_10316439	Not Available	527	Open in IMG/M
3300028784\|Ga0307282_10048217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1896	Open in IMG/M
3300028787\|Ga0307323_10066908	Not Available	1275	Open in IMG/M
3300028793\|Ga0307299_10173232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300028796\|Ga0307287_10056782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1446	Open in IMG/M
3300028819\|Ga0307296_10596675	Not Available	604	Open in IMG/M
3300028828\|Ga0307312_10275774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1092	Open in IMG/M
3300028828\|Ga0307312_10774964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300028872\|Ga0307314_10261255	Not Available	540	Open in IMG/M
3300028880\|Ga0307300_10259415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus rhizosphaerae	579	Open in IMG/M
3300028884\|Ga0307308_10216767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300030006\|Ga0299907_10175495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1771	Open in IMG/M
3300030007\|Ga0311338_10615353	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1114	Open in IMG/M
3300031446\|Ga0170820_12454603	Not Available	596	Open in IMG/M
3300031671\|Ga0307372_10135392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1796	Open in IMG/M
3300031740\|Ga0307468_100796292	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300031799\|Ga0318565_10200075	Not Available	971	Open in IMG/M
3300031799\|Ga0318565_10557232	Not Available	552	Open in IMG/M
3300031879\|Ga0306919_10586575	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300032065\|Ga0318513_10313607	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300032067\|Ga0318524_10405917	Not Available	711	Open in IMG/M
3300032897\|Ga0335071_11905476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300032954\|Ga0335083_10679690	Not Available	838	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.06%
Host-Associated	Host-Associated	23.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.83%
Plants	Host-Associated → Plants	23.94%
Aquatic	Environmental → Aquatic	4.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.45%
Sediment	Environmental → Aquatic → Sediment	2.82%
Freshwater	Environmental → Aquatic → Freshwater	1.41%
Peat	Environmental → Terrestrial → Peat	0.70%
Floodplain	Environmental → Terrestrial → Floodplain	0.70%
Roots	Host-Associated → Plants → Roots	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.04%
Loam	Environmental → Terrestrial → Soil → Loam	6.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.11%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.41%
Clay	Environmental → Terrestrial → Soil → Clay	0.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.11%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.41%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.70%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.82%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.11%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.11%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.11%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.11%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.11%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.41%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.41%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.41%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.70%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.70%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.70%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.70%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.70%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090004	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005894	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203	Environmental	Open in IMG/M
3300005902	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010136	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012386	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014307	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_DRAFT_00354140	2088090004	Soil	HEGKVVGRVTSAVPGLALGYVRVQVPDDAELQIDGAPARLH
L01_01675880	2170459006	Grass Soil	VGRITSSVPGLALAYVRVSVPADAVLDVDGRSARLH
C688J18823_101243576	3300001686	Soil	RQADEVTYEGEVVGRVTSAVPGLALAYVRVEVPDGAELEVGGKPARLQ*
C688J18823_105574181	3300001686	Soil	PETEIELAGKTVGRVTSAVPGLALGYVRTEVPDDAVLSIGAARARLH*
soilH1_100956818	3300003321	Sugarcane Root And Bulk Soil	RVTSAVDGLALAYVRVEVPDDAELDVAGARARLHWPTERP*
Ga0063455_1002115243	3300004153	Soil	AEIAYDGKVVGRVTSAVPGVALGYVRVEVPDDAELAVGDAAARLVG*
Ga0062594_1033628422	3300005093	Soil	IVHDGKAVGRVTSAVLGVALGYVRVEVPEGAEVRAGGAVARLR*
Ga0070670_1010615772	3300005331	Switchgrass Rhizosphere	EVDADAEIRLGEKAVGRVTSVVPGLALAYVRTEVPDDAVLEIGAARARLH*
Ga0070666_110719333	3300005335	Switchgrass Rhizosphere	DEIRLGEKTVGRITSAVPGVALGYVRVEVPDDAQLDVEGEPARLRS*
Ga0070659_1015731893	3300005366	Corn Rhizosphere	GDEVAFEGKSVGRVTSAVPGRALGYVRVEVPDGAGVMVGGKDARLH*
Ga0070701_107045261	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	GKAVGRVTSAVAGLALGYVRVEVVEHADLRVGSSEARLR*
Ga0070711_1005706311	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VVYGEKEVGRVTSAVPGLALAYVRVEVPDDAELSVGSASARLH*
Ga0073909_103238121	3300005526	Surface Soil	VVGRVTSAVPGLALAYVRVEVPDGAELTVSGRPARIH*
Ga0070684_1022055492	3300005535	Corn Rhizosphere	HDGKAVGRVTSAVPGVALGYVRVEVPEGTEVRAGGAVARLR*
Ga0066702_100931051	3300005575	Soil	VVGRITSAVPGLALGYVRTEVPDDAELRIGDRRARLH*
Ga0068852_1002740295	3300005616	Corn Rhizosphere	LHDGKDVGRVTSSVAGLALAYVRVSVPEDAALEVGGSPARLHWPTGRP*
Ga0068870_110216893	3300005840	Miscanthus Rhizosphere	QVGRITSAVPGVALAYVREEVPDDAEVSVGGATARLHLAPARP*
Ga0068870_113065441	3300005840	Miscanthus Rhizosphere	IVLEGKAVGRVTSAVAGLALGYVRVEVVEHADLRVGSSEARLR*
Ga0075270_10710371	3300005894	Rice Paddy Soil	VGRVTSAVPGLALAYVRVEVPDDAELSVEGRPARLR*
Ga0075273_101007512	3300005902	Rice Paddy Soil	VTSAVPGLALGYVRVEVPDDAELEVEGLPARLRALETS*
Ga0066656_108053081	3300006034	Soil	HEGKDVGRVTSSVSGLALAYVRVSVPDDAVLDVGGAEARLH*
Ga0079222_101542801	3300006755	Agricultural Soil	HDGQVVGRVTSAVPGIALAYVRVEVADGADLQVGGRPARLH*
Ga0079217_114941253	3300006876	Agricultural Soil	LGEKTIGRITSSVPGLALAYVRVEVPADAELSVGGAKARSAA*
Ga0075436_1007656641	3300006914	Populus Rhizosphere	EIEYGGKQVGRITSAVPGVALAYVREEVPDDAEVSVGGATARLHLAPARP*
Ga0079219_110181624	3300006954	Agricultural Soil	GRITSVAGDVALGYVRTEVPDEAELRIGTARARLD*
Ga0075435_1000586875	3300007076	Populus Rhizosphere	TSAVPGFALGYVRTEVPDEAELSVGGAVARLHLTPARP*
Ga0066710_1003286875	3300009012	Grasslands Soil	VGRVTSAVPGLALGYVRVGVPDGAELEVGGAAARLH
Ga0066710_1003635021	3300009012	Grasslands Soil	AVVFGEREVGRVTSAVPGLALAYVRVEVPDDAELRVGSAAARLH
Ga0066710_1029724861	3300009012	Grasslands Soil	VGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0105245_111194553	3300009098	Miscanthus Rhizosphere	LGEKTVGRVTSAVPGVALGYVRVEVSDDAQLDVEGEPARLRS*
Ga0105245_121817241	3300009098	Miscanthus Rhizosphere	AEILHEGKVVGRVTSAVPGLALAYVRTAVPADAELEITY*
Ga0105245_127155723	3300009098	Miscanthus Rhizosphere	EIAYDGKVVGRVTSAVPGVALGYVRVEVPEDAALAVGDAAARLVG*
Ga0114129_132112761	3300009147	Populus Rhizosphere	GKTVGRITSAVPGFALGYVRTEVPDEAELSVGGAVARLHLTPARP*
Ga0075423_103498481	3300009162	Populus Rhizosphere	IFHGEKAVGRVTSAVPGRALGYIRREVPDDAELRIGGAEARLHLPSPRP*
Ga0105241_112695543	3300009174	Corn Rhizosphere	EVAFEGKPVGRVTSAVPGRALGYVRVEVPDGAGVMVGGKDARLH*
Ga0116214_13540751	3300009520	Peatlands Soil	RTVGRVTSAVPGLALGYLRTDVPGDATLEIAGRNVRIH*
Ga0105249_118805681	3300009553	Switchgrass Rhizosphere	PGDEILLEGRVVGRVTSAVPGRALGYVRVEVPDDSELSIRGRLARLH*
Ga0105249_121896022	3300009553	Switchgrass Rhizosphere	VLLEGKPVGRITSSVDGLALAYVRVEVPEDAPLEVAGAPARLH*
Ga0126307_111478931	3300009789	Serpentine Soil	VTSSVPGLALAYVRVEVPEDVELAVGGRTARQLH*
Ga0126304_110371251	3300010037	Serpentine Soil	VGRVTSSIAGLALAYVRTDVSEDAELTVAGATASTVR*
Ga0126309_105832633	3300010039	Serpentine Soil	VTSAVPGRALGYVRREVADDTALTIDGQDARLHLTTPRP*
Ga0126312_108422953	3300010041	Serpentine Soil	GDKIVGRVTSSVAGLALAYVRVEVPEDAELAVGGRRARQLH*
Ga0127447_11771251	3300010136	Grasslands Soil	PGRALGYVRREVPDDEVLSIGGQEARLHLTTPRP*
Ga0126319_10023301	3300010147	Soil	KTVGRVTSAVPGLALGYVRREVDDDAELEIGGAEARLHLATPRP*
Ga0126319_14176661	3300010147	Soil	AAPDPETEIQLDGKTVGRVTSAVPGLALGYVRVEVPADALLSVGGMKARLH*
Ga0134111_102853481	3300010329	Grasslands Soil	TSAVPGLALAYVRNEVPDGAELEVEGRAATLTAPRP*
Ga0126378_121690201	3300010361	Tropical Forest Soil	KAVGRVTSAVPGKALGYVRREVPDDAVLEVGGAEARLHLHPARP*
Ga0134125_114924714	3300010371	Terrestrial Soil	TSAVDGLALGYVRVEVPDDAELIVGGKPARLHWPPERP*
Ga0134128_121571711	3300010373	Terrestrial Soil	ARQGDPVLHEGAAVGRGTSAVPGLALAYVRVEVPDDADLRVGGAPARLRR*
Ga0134128_123368032	3300010373	Terrestrial Soil	DGKDVGRITSSVDGLALGYVRAEGADDAELSVEGRPARLRPLA*
Ga0134124_127895671	3300010397	Terrestrial Soil	KAVGRVTSVVPGLALAYVRTEVPDDAVLEIGAARARLH*
Ga0120174_10367953	3300012008	Permafrost	TSAVPGRALGYVRREVPDDAELRIGRAEARLHLPTARP*
Ga0137376_106549473	3300012208	Vadose Zone Soil	GEKAVGRVTSAVPGNALGYVRVEVPDDAELDVAGRPARLRKTP*
Ga0137376_116255392	3300012208	Vadose Zone Soil	VGRITSAVPGRALGYVRVEVPDDAELEIGSVRGRLR*
Ga0150985_1007239142	3300012212	Avena Fatua Rhizosphere	GDPPPPEAPVAYEGKEVGRITSAVPGLALAFVRVSVPDDAVLEVGGRRARLH*
Ga0150985_1052349331	3300012212	Avena Fatua Rhizosphere	EGRQADEVTYEGEVVGRVTSAVPGLALAYVRVEVPDGAELEVGGKPARPQ*
Ga0137366_111267311	3300012354	Vadose Zone Soil	KAVGRVTSAVPGLALGYVRVEVADEAALQVEGRPARLRP*
Ga0134046_11590231	3300012386	Grasslands Soil	DEILYEGKVVGRVTSAVPGLALAYVRVEVPADAPVTIGEVRARIRS*
Ga0134057_13304643	3300012396	Grasslands Soil	ADEVTYEGDVVGRVTSAVPGLALAYVRVEVPDGAELEVGGKPARLQ*
Ga0157349_10072324	3300012489	Unplanted Soil	EGKAVGRVTSAVAGLALGYVRVEVVEHADLRVGSSEARLR*
Ga0157335_10100321	3300012492	Arabidopsis Rhizosphere	PGRALGYVRREVPDDAELRIGGAGARLHLPSPRP*
Ga0157338_10261643	3300012515	Arabidopsis Rhizosphere	VTSAVPGRALGYVRREVPDDAVLKIGGAEARLHFSPARP*
Ga0164300_105496031	3300012951	Soil	SAVSGKALGYVRREVSDDAVLQIGGAEARLHLATPRP*
Ga0164301_118941711	3300012960	Soil	TPVRLREKDVARSTSAAPCLALAYVPVEVPDDAELRVGDASARLRR*
Ga0164302_112773381	3300012961	Soil	YGEKEVGRVTSSVPGLALAYVRVEVPDDAELRIGSAAARLH*
Ga0126369_133217183	3300012971	Tropical Forest Soil	TSSVDGLALGYVRVEVPDDATLDVGGEAARLHWPVERP*
Ga0164308_121010903	3300012985	Soil	SAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP*
Ga0157370_107857823	3300013104	Corn Rhizosphere	GDEIVLEGKAVGRVTSAVAGLALGYVRVEVVEHADLRVGSSEARLR*
Ga0134078_101876803	3300014157	Grasslands Soil	DEIFLGDKAVGRVTSAAPGNALGYVRREVPEDAELRIGGASARLH*
Ga0134079_106195311	3300014166	Grasslands Soil	RGKSVGRVTSAVHGLALAYVRKEVPDDAELSVGDATARLHLPSARP*
Ga0075323_10612032	3300014301	Natural And Restored Wetlands	KAVGRVTSAVPGLALAYVRVEVPDGAELEVEGRTARFRPA*
Ga0075304_11304971	3300014307	Natural And Restored Wetlands	KVVGRVTSAVPGKALGYVRREVPDDAELEIAGQPARLH*
Ga0163163_124452263	3300014325	Switchgrass Rhizosphere	DEIVLEGKAVGRVTSAVPGVALGYVRVEVPDDAELLVGATRVRLRSQGAQQ*
Ga0157376_108202241	3300014969	Miscanthus Rhizosphere	AVGRVTSVVPGLALGYMRVEVSEDAELSVGGKPARLH*
Ga0157376_125198092	3300014969	Miscanthus Rhizosphere	EVRDGEIVVGRVTSAVPGLALAYVRVEVPEGAELTVSGRPARIH*
Ga0134073_104164431	3300015356	Grasslands Soil	VTSAVHGLALAYVRKEVPDDAELSVGDATARLHLPSARP*
Ga0132257_1002641843	3300015373	Arabidopsis Rhizosphere	RVTSAVPGRALAYVRVEVPDDAPLSVGGTRARLH*
Ga0182035_113231731	3300016341	Soil	RQADEVYEGERVVGRVTSAVPGLALAYVRVEVPDGAELTVSGRPARIH
Ga0134074_11158253	3300017657	Grasslands Soil	GRVTSAVPGLALAYVRVEVPQGAELAVGGKPARLQ
Ga0187778_105943662	3300017961	Tropical Peatland	VLDGKVVGRVTSAVPGLALGYVRVEVPDEARLEIGGRAARLR
Ga0187780_108280651	3300017973	Tropical Peatland	GRVTSAVPGLALGYVRVEVPDEARLEIGGRAARLR
Ga0187788_104148623	3300018032	Tropical Peatland	VGRITSAVPGLALGFVRREVPDDAELTVAEEPSRLHSPG
Ga0184619_101467573	3300018061	Groundwater Sediment	VGRVTSAVPGVALAYVRNEVPDDAALSVGGATARLDLAPARP
Ga0184618_102840003	3300018071	Groundwater Sediment	DKVVGRVTSAVPGRALGYVRREVADDAELQIRGTSARLH
Ga0184625_101551301	3300018081	Groundwater Sediment	AVGRVTSAIPGRALAYVRTEVPEDAELDVSGRTARLAG
Ga0190265_121296191	3300018422	Soil	TEIRAGDKVVGRVTSAVPGLALGYVRTEVADDAVLEIDGVEARLH
Ga0066655_109174481	3300018431	Grasslands Soil	SAVPGFALGYVRTEVPDDAELSVGGAVARLHLTPPRP
Ga0066655_110673171	3300018431	Grasslands Soil	IRLNEKIVGRVTSALPRRALGYVRTEVPDDAELRIGSARARLH
Ga0190268_111130733	3300018466	Soil	IRLGEKAVGRVTSVVPGLALAYVRTEVPDDAVLEIGAARARLHLATSRP
Ga0190274_118011382	3300018476	Soil	EGEKAVGRVTSSVPGLALAYVRTTVPHDAALTVDGARASLR
Ga0066669_102766911	3300018482	Grasslands Soil	DVVGRVTSAVPGLALAYVRVEVPDGAELEVGGKPARLQ
Ga0173481_106701121	3300019356	Soil	RVTSAVPGRALGYVRREVPDDAVLQIGAAEARLHLPSPRP
Ga0173482_103107611	3300019361	Soil	FGDKEVGRITSSVPGLALAYVRVEVPAEAELRAGGATARIR
Ga0193735_10503121	3300020006	Soil	SPGDEIEYQGKSVGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0193694_10443203	3300021415	Soil	VGRVTSAVPGKALGYVRREVPDDAELEIGGQPARLH
Ga0222621_11176441	3300021510	Groundwater Sediment	SVGRVTSAVPGLALGYVRTEVPDDAELEIAGASARLH
Ga0208077_10652851	3300025427	Arctic Peat Soil	ETPVSFAGKDVGRITSSVPGVALAYVRVEVPDDAELEVAGIRARLH
Ga0207710_100871013	3300025900	Switchgrass Rhizosphere	KAVGRVTSAVPGRALGYVRREVPDDAVLRIGGAEARLHLATPRP
Ga0207709_105082993	3300025935	Miscanthus Rhizosphere	EYQGKSVGRVTSAVPGVALAYVRSEVPDDAELSVGGVTARLDLAPARP
Ga0207665_100157041	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VLDGKAVGRVTSAAPGKALGYVRREVPDDAGLQVGGAEARLHLLPARP
Ga0207665_104095053	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	QGKPVGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0207661_104695512	3300025944	Corn Rhizosphere	VHAGKAVGRVTSAVPGVALGFVRVEVPEDAELLVESRPARLRP
Ga0208415_10095891	3300025993	Rice Paddy Soil	AVPGLALAYVRREVEDDAELEIGGATARLHLPAPRP
Ga0207639_117902722	3300026041	Corn Rhizosphere	VLDVEAATPGDEIIHDGKAVGRVTSAVPGVALGYVRVEVPEGTEVRAGGAVARLR
Ga0207648_107016461	3300026089	Miscanthus Rhizosphere	EIVLEGKAVGRVTSAVAGLALGYVRVEVVEHADLRVGSSEARLR
Ga0207676_125730571	3300026095	Switchgrass Rhizosphere	DKEVGRITSSVPGLALAYVRVEVPVEAELRAGGATARIR
Ga0207698_125891533	3300026142	Corn Rhizosphere	EKEVGRVTSAVDGLALAYVRVEVPDDAQLIVAGAPARLHWPPERP
Ga0209350_11319622	3300026277	Grasslands Soil	GDEIEHDGKSVGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0209074_105718061	3300027787	Agricultural Soil	HDGQVVGRVTSAVPGIALAYVRVEVADGADLQVGGRPARLH
Ga0209382_101087791	3300027909	Populus Rhizosphere	VFDGEKAVGRVTSSVPGLALAYVRTTVPPDAALTVDGATASLR
Ga0265337_11306941	3300028556	Rhizosphere	HDGKEVGRITSAVPGLALAYVRVSVPDGAVLDVDGRPARLH
Ga0307322_101443133	3300028710	Soil	LYGERTVGRVTSAVPGRALGFVRREVPDDAELRIGGAEARLHLTPPRP
Ga0307309_101070062	3300028714	Soil	VVFGEKEVGRVTSAVPGLALAYVRVEVPADAELQVGDATARVRA
Ga0307311_101234112	3300028716	Soil	QGKSVGRVTSAVPGLALAYVRKEVPDDAELSIGGTTARLHLAPARP
Ga0307311_101974023	3300028716	Soil	ILHDGKTVGRVTSAVPGRALGYVRREVPKDALLQVGGADARLH
Ga0307301_100636564	3300028719	Soil	EILLREKAVGRVTSAVPGRALGYVRREVPKDALLQIGGADARLH
Ga0307317_100122141	3300028720	Soil	VPGRALGYVRREVPDDAELSIGAQEARLHLPPPRP
Ga0307317_103164391	3300028720	Soil	EIVHEGKPVGRVTTSVPGLALGYVRTEVPEDAELEIAGATARLH
Ga0307282_100482171	3300028784	Soil	YGEKTVGRVTSAVPGRALGFVRREVPDDAELRIGGAEARLHLTPPRP
Ga0307323_100669084	3300028787	Soil	TSAVPGRALGFVRREVPDDAELRIGGAEARLHLTPPRP
Ga0307299_101732324	3300028793	Soil	RVTSAVPGRALGFVRREVPDDAELRIGGAEARLHLTPPRP
Ga0307287_100567821	3300028796	Soil	GKSVGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0307296_105966753	3300028819	Soil	QGKSVGRVTSAVPGVALAYVRNEVPDDAELSVGGATARLDLAPARP
Ga0307312_102757743	3300028828	Soil	SAVPGRALGYVRREVPDDAELSIGAQEARLHLPPPRP
Ga0307312_107749643	3300028828	Soil	LLGEKPVGRVTSAVPGRALGYVRREVPDDAVLKIGDAEARLHLPSPRP
Ga0307314_102612553	3300028872	Soil	AVPGRALGFVRREVPDDAELRIGGAEARLHLTPPRP
Ga0307300_102594151	3300028880	Soil	DPPAFDAELLYGEKPVGRVTSAVDGHALAYVRVEVPDDAELRAGDTVARLVG
Ga0307308_102167673	3300028884	Soil	GEKAVGRVTSAVPGRALAYIRREVSDDAVLQIGGAEARLHLPSPRP
Ga0299907_101754955	3300030006	Soil	VGRVTSSVPGLALAYVRREVPEEAELVVGGRAATQLH
Ga0311338_106153531	3300030007	Palsa	SGDAVRHGERDVGTVTSSVPGLALAYLRTEVPDDASLEVGGRPARIH
Ga0170820_124546033	3300031446	Forest Soil	GKDVGRITSAVPGLALAFIRVEVPDDATLEIDGRSARLH
Ga0307372_101353923	3300031671	Soil	GCVVGRVTSAVAGLALAYVRVDVPAGADLDVAGRAARTRIPPGADG
Ga0307468_1007962923	3300031740	Hardwood Forest Soil	ADEVVHEGAAVGRVTSAVPGLALAYVRVEVPDGAELEVGGRKARLH
Ga0318565_102000753	3300031799	Soil	FEGKDVGRVTSAVPGLALAYVRVEVPDDATLDVDGRTARLH
Ga0318565_105572323	3300031799	Soil	VYEGERVVGRVTSAVPGLALAYVRVEVPEGAELTVSGRPARIH
Ga0306919_105865753	3300031879	Soil	PVTYEGKEVGRLTSAVPGLALAYVRVEVPDSAVLDVGSATARVH
Ga0318513_103136073	3300032065	Soil	GKEVGRLTSVVPGLALAYVRVEVPDSAVLDVGSATARVH
Ga0318524_104059173	3300032067	Soil	GRVTSAVPGLALAYVRVEVPDDATLDVDGRTARLH
Ga0335071_119054761	3300032897	Soil	HESSAVGRVTSAVDGLALAYVRVEVPDGAELTVAGRPARIH
Ga0335083_106796903	3300032954	Soil	GEKEVGRVTSSVPGLALAYVRVEVPEDAELSVGGTAARLH
Ga0364943_0102659_828_998	3300034354	Sediment	LLEIDSASSGEEITYEGKAVGRVTSAIPGRALAYVRTEVPEDAELDVAGRTARLAG
Ga0373948_0008078_3_164	3300034817	Rhizosphere Soil	PGDEIEYGGKQVGRITSAVPGVALAYVREEVPDDAEVSVGGATARLHLAPARP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052528

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign