Metagenome / Metatranscriptome Family F053460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053460
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	59 residues
Representative Sequence	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFIRGFKRWVHGDQIKQIEEEEDL
Number of Associated Samples	85
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.29 %
% of genes near scaffold ends (potentially truncated)	28.37 %
% of genes from short scaffolds (< 2000 bps)	89.36 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.213 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.858 % of family members)
Environment Ontology (ENVO)	Unclassified (36.170 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.830 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.20% β-sheet: 0.00% Coil/Unstructured: 37.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF06411	HdeA	7.80
PF11272	DUF3072	2.13
PF06912	DUF1275	1.42
PF01527	HTH_Tnp_1	1.42
PF07045	DUF1330	0.71
PF12071	DUF3551	0.71
PF00583	Acetyltransf_1	0.71
PF12833	HTH_18	0.71
PF09361	Phasin_2	0.71
PF03401	TctC	0.71
PF00072	Response_reg	0.71
PF03457	HA	0.71
PF00239	Resolvase	0.71
PF04226	Transgly_assoc	0.71
PF06577	EipA	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	1.42
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.71
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.71
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.71
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.71
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
All Organisms	root	All Organisms	29.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
cellular organisms	root	All Organisms → cellular organisms	29.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.60 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.13 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.13 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.13 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.42 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.21 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.84 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	2.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.13 %
Mesorhizobium sp. WSM3882	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. WSM3882	0.71 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.71 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000816\|AF_2010_repII_A10DRAFT_1020412	Not Available	700	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1037226	Not Available	512	Open in IMG/M
3300001867\|JGI12627J18819_10218746	Not Available	768	Open in IMG/M
3300004152\|Ga0062386_101536861	Not Available	555	Open in IMG/M
3300004633\|Ga0066395_10009977	All Organisms → cellular organisms → Bacteria → Proteobacteria	3485	Open in IMG/M
3300005332\|Ga0066388_100163257	Not Available	2819	Open in IMG/M
3300005332\|Ga0066388_100907681	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300005332\|Ga0066388_101975321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1044	Open in IMG/M
3300005332\|Ga0066388_102691018	Not Available	907	Open in IMG/M
3300005332\|Ga0066388_103404518	Not Available	812	Open in IMG/M
3300005332\|Ga0066388_104348600	Not Available	722	Open in IMG/M
3300005332\|Ga0066388_104532455	Not Available	707	Open in IMG/M
3300005332\|Ga0066388_105278781	Not Available	655	Open in IMG/M
3300005332\|Ga0066388_105288334	Not Available	655	Open in IMG/M
3300005332\|Ga0066388_106952056	Not Available	569	Open in IMG/M
3300005363\|Ga0008090_14137143	Not Available	713	Open in IMG/M
3300005363\|Ga0008090_14670452	Not Available	508	Open in IMG/M
3300005764\|Ga0066903_101917013	Not Available	1135	Open in IMG/M
3300005764\|Ga0066903_103164409	Not Available	890	Open in IMG/M
3300005764\|Ga0066903_105692006	Not Available	655	Open in IMG/M
3300006041\|Ga0075023_100194950	Not Available	778	Open in IMG/M
3300006041\|Ga0075023_100566404	Not Available	523	Open in IMG/M
3300006052\|Ga0075029_100231745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	1162	Open in IMG/M
3300006052\|Ga0075029_101220715	Not Available	526	Open in IMG/M
3300006057\|Ga0075026_100672763	Not Available	616	Open in IMG/M
3300006059\|Ga0075017_100483530	Not Available	937	Open in IMG/M
3300006059\|Ga0075017_100855494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	704	Open in IMG/M
3300006162\|Ga0075030_101410865	Not Available	546	Open in IMG/M
3300006174\|Ga0075014_100517085	Not Available	670	Open in IMG/M
3300006175\|Ga0070712_100314910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1271	Open in IMG/M
3300006755\|Ga0079222_10557075	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300010048\|Ga0126373_10430064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1351	Open in IMG/M
3300010048\|Ga0126373_11793083	Not Available	677	Open in IMG/M
3300010048\|Ga0126373_11957913	Not Available	649	Open in IMG/M
3300010358\|Ga0126370_10173539	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300010358\|Ga0126370_10214009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1467	Open in IMG/M
3300010358\|Ga0126370_12269533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300010358\|Ga0126370_12326316	Not Available	531	Open in IMG/M
3300010359\|Ga0126376_12356172	Not Available	579	Open in IMG/M
3300010361\|Ga0126378_10115209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2681	Open in IMG/M
3300010361\|Ga0126378_11025763	Not Available	928	Open in IMG/M
3300010361\|Ga0126378_12790396	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300010376\|Ga0126381_101629946	Not Available	932	Open in IMG/M
3300010376\|Ga0126381_102973797	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300010863\|Ga0124850_1041027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1472	Open in IMG/M
3300012677\|Ga0153928_1119991	Not Available	511	Open in IMG/M
3300012971\|Ga0126369_10871826	Not Available	985	Open in IMG/M
3300012971\|Ga0126369_11863999	Not Available	690	Open in IMG/M
3300016270\|Ga0182036_10654809	Not Available	847	Open in IMG/M
3300016294\|Ga0182041_10229416	Not Available	1498	Open in IMG/M
3300016294\|Ga0182041_11370211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	649	Open in IMG/M
3300016341\|Ga0182035_10755303	Not Available	851	Open in IMG/M
3300016341\|Ga0182035_11170208	Not Available	686	Open in IMG/M
3300016341\|Ga0182035_11847140	Not Available	547	Open in IMG/M
3300016341\|Ga0182035_12102163	Not Available	513	Open in IMG/M
3300016341\|Ga0182035_12133099	Not Available	509	Open in IMG/M
3300016357\|Ga0182032_11372958	Not Available	611	Open in IMG/M
3300016371\|Ga0182034_11273332	Not Available	641	Open in IMG/M
3300016371\|Ga0182034_11530666	Not Available	585	Open in IMG/M
3300016387\|Ga0182040_10645658	Not Available	861	Open in IMG/M
3300016422\|Ga0182039_10579401	Not Available	978	Open in IMG/M
3300016422\|Ga0182039_11534487	Not Available	607	Open in IMG/M
3300016422\|Ga0182039_11819463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	558	Open in IMG/M
3300016445\|Ga0182038_10792455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	830	Open in IMG/M
3300017822\|Ga0187802_10003039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. WSM3882	4838	Open in IMG/M
3300017822\|Ga0187802_10019749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2305	Open in IMG/M
3300017822\|Ga0187802_10297389	Not Available	629	Open in IMG/M
3300017924\|Ga0187820_1216282	Not Available	603	Open in IMG/M
3300017928\|Ga0187806_1052210	Not Available	1245	Open in IMG/M
3300017928\|Ga0187806_1137016	Not Available	801	Open in IMG/M
3300017933\|Ga0187801_10068266	Not Available	1312	Open in IMG/M
3300017942\|Ga0187808_10383754	Not Available	641	Open in IMG/M
3300017943\|Ga0187819_10857612	Not Available	509	Open in IMG/M
3300017955\|Ga0187817_10949996	Not Available	550	Open in IMG/M
3300017961\|Ga0187778_11291946	Not Available	513	Open in IMG/M
3300017970\|Ga0187783_10031010	All Organisms → cellular organisms → Bacteria	3960	Open in IMG/M
3300017970\|Ga0187783_10038093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3562	Open in IMG/M
3300017973\|Ga0187780_10288596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1152	Open in IMG/M
3300017974\|Ga0187777_11167133	Not Available	562	Open in IMG/M
3300017995\|Ga0187816_10283873	Not Available	725	Open in IMG/M
3300018058\|Ga0187766_10989662	Not Available	598	Open in IMG/M
3300020581\|Ga0210399_10598027	Not Available	913	Open in IMG/M
3300021178\|Ga0210408_10931723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	675	Open in IMG/M
3300021560\|Ga0126371_10024250	All Organisms → cellular organisms → Bacteria	5624	Open in IMG/M
3300021560\|Ga0126371_10101164	All Organisms → cellular organisms → Bacteria → Proteobacteria	2872	Open in IMG/M
3300021560\|Ga0126371_10883672	Not Available	1038	Open in IMG/M
3300021560\|Ga0126371_11045863	Not Available	957	Open in IMG/M
3300021560\|Ga0126371_11171456	Not Available	906	Open in IMG/M
3300021560\|Ga0126371_11467917	Not Available	811	Open in IMG/M
3300021560\|Ga0126371_11699121	Not Available	755	Open in IMG/M
3300025915\|Ga0207693_10638993	Not Available	827	Open in IMG/M
3300026819\|Ga0207765_108138	Not Available	882	Open in IMG/M
3300026845\|Ga0207760_104606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1199	Open in IMG/M
3300026859\|Ga0207859_1009628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300026872\|Ga0207785_1016937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	640	Open in IMG/M
3300026959\|Ga0207852_1030597	Not Available	550	Open in IMG/M
3300026997\|Ga0207784_1006913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1295	Open in IMG/M
3300027898\|Ga0209067_10790845	Not Available	553	Open in IMG/M
3300027910\|Ga0209583_10278526	Not Available	750	Open in IMG/M
3300031057\|Ga0170834_111431393	Not Available	533	Open in IMG/M
3300031128\|Ga0170823_11515836	Not Available	533	Open in IMG/M
3300031231\|Ga0170824_128409326	Not Available	693	Open in IMG/M
3300031573\|Ga0310915_10051655	All Organisms → cellular organisms → Bacteria	2655	Open in IMG/M
3300031573\|Ga0310915_10362935	Not Available	1027	Open in IMG/M
3300031573\|Ga0310915_10540784	Not Available	827	Open in IMG/M
3300031573\|Ga0310915_10706882	Not Available	711	Open in IMG/M
3300031680\|Ga0318574_10554247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	674	Open in IMG/M
3300031708\|Ga0310686_101973626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1036	Open in IMG/M
3300031708\|Ga0310686_108526616	Not Available	931	Open in IMG/M
3300031708\|Ga0310686_110147098	Not Available	763	Open in IMG/M
3300031708\|Ga0310686_114053957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3200	Open in IMG/M
3300031719\|Ga0306917_10426851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1037	Open in IMG/M
3300031736\|Ga0318501_10510190	Not Available	656	Open in IMG/M
3300031754\|Ga0307475_10323974	Not Available	1238	Open in IMG/M
3300031768\|Ga0318509_10225374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1045	Open in IMG/M
3300031833\|Ga0310917_10204001	Not Available	1322	Open in IMG/M
3300031890\|Ga0306925_10868384	Not Available	930	Open in IMG/M
3300031910\|Ga0306923_10181484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2404	Open in IMG/M
3300031910\|Ga0306923_11129512	Not Available	842	Open in IMG/M
3300031912\|Ga0306921_10933842	Not Available	983	Open in IMG/M
3300031941\|Ga0310912_10767710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	745	Open in IMG/M
3300031941\|Ga0310912_11367495	Not Available	535	Open in IMG/M
3300031942\|Ga0310916_10229130	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300031942\|Ga0310916_10487559	Not Available	1050	Open in IMG/M
3300031942\|Ga0310916_11465267	Not Available	557	Open in IMG/M
3300031945\|Ga0310913_10522088	Not Available	843	Open in IMG/M
3300031947\|Ga0310909_10735878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	818	Open in IMG/M
3300031954\|Ga0306926_12988971	Not Available	505	Open in IMG/M
3300031959\|Ga0318530_10234839	Not Available	755	Open in IMG/M
3300031962\|Ga0307479_11543847	Not Available	620	Open in IMG/M
3300032001\|Ga0306922_11640081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300032066\|Ga0318514_10558100	Not Available	610	Open in IMG/M
3300032076\|Ga0306924_11291393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300032091\|Ga0318577_10421084	Not Available	638	Open in IMG/M
3300032094\|Ga0318540_10648325	Not Available	509	Open in IMG/M
3300032205\|Ga0307472_101825941	Not Available	604	Open in IMG/M
3300032261\|Ga0306920_100265586	Not Available	2559	Open in IMG/M
3300032261\|Ga0306920_101090762	Not Available	1158	Open in IMG/M
3300032261\|Ga0306920_101754843	Not Available	877	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.29%
Host-Associated	Host-Associated	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.98%
Aquatic	Environmental → Aquatic	16.31%
Fungi	Host-Associated → Fungi	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.98%
Freshwater	Environmental → Aquatic → Freshwater	8.51%
Sediment	Environmental → Aquatic → Sediment	7.80%
Mycelium	Host-Associated → Fungi → Mycelium	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.70%
Loam	Environmental → Terrestrial → Soil → Loam	17.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.26%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.26%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.71%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.42%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.71%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A10DRAFT_10204121	3300000816	Forest Soil	MVIVNFLATLLWIGMLLGFLFAVFWVIVAVVFVRGFNRWVHGDRTREIEEAEDRSAVRRLLDDA*
AF_2010_repII_A10DRAFT_10372262	3300000816	Forest Soil	MVILSFLATLLWIAMLIGFLAAVFWLIAIVVFVRGFKRWVHGDQIRQIEEEEDIAY*
JGI12627J18819_102187461	3300001867	Forest Soil	MVILSFVATMLWIAMLLGFLAAVFWVIVAVVFIRGFKRWVHGDEIKQIERRNLER*
Ga0062386_1015368611	3300004152	Bog Forest Soil	MVILSFLASVIWVAMLVGFIVAVFWVIATVVFIRGFKHWVHGHDQIKQVEAEDDLIDDVLGR*
Ga0066395_100099773	3300004633	Tropical Forest Soil	MVILSFLATVLWVAMLIGFLVAVFWAIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGLRR*
Ga0066388_1001632571	3300005332	Tropical Forest Soil	MVILSFLATMLWIAMLLGFLAAVFWVIVVVVFIRGFERWIHGDEIKQIERRNLGR*
Ga0066388_1009076812	3300005332	Tropical Forest Soil	MAILSFLATLLWIAMLIGFLVAVFWVIAIVVFVRGFKRFVHGDQIKHIEEKEDVA*
Ga0066388_1019753211	3300005332	Tropical Forest Soil	MVILSFLATLLWLAMLIGFIVAVFWVIAIVVFVRGFKRWVHGDQIKQIEEERT*
Ga0066388_1026910181	3300005332	Tropical Forest Soil	MVILSFLATMLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDESLRR*
Ga0066388_1034045181	3300005332	Tropical Forest Soil	MPILSFLATMLWVAMLLGFVVAVFWVIFIVVFIRGFKRWVHGDQIKQIEEE
Ga0066388_1043486001	3300005332	Tropical Forest Soil	MVILHFLATMLWIAMLLGFLIAVFWVIAVVVFIRGFKRWVHGDDQIKQIEEEEDLIDEV*
Ga0066388_1045324552	3300005332	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFIRGFKRWVHGDQIKQIEEEEDLIDDVYGR*
Ga0066388_1052787811	3300005332	Tropical Forest Soil	WVAMLLGFVVAVFWVIFIVVFIRGFKRWVHGDQIKQIEEEAEDLMDESLGR*
Ga0066388_1052883342	3300005332	Tropical Forest Soil	MAILSFLATLLWIAMLIGFLVAVFWMIAIVVFVRGFKRWVHGDQIKQIEEDEDLAY*
Ga0066388_1069520562	3300005332	Tropical Forest Soil	MVILHFLATLLWIAMLIGFLVAVFWTIAIVVFVRGFKRFVHGDQIKEIEEKEDVAH*
Ga0008090_141371432	3300005363	Tropical Rainforest Soil	MVILSFLASLLWIAMLIGFLVAVFWMIAIVVFVRGFKRWVHGDQLKQIEEDEDV*
Ga0008090_146704521	3300005363	Tropical Rainforest Soil	MVILHFLATVLWIGMLLGFLFAVFWGIVTVVLIRGYKRWVHGDEQIEPEQDLLDDA*
Ga0066903_1019170132	3300005764	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWMIAIVVFVRGFKRWVHGDQINQIEEDEDLAY*
Ga0066903_1031644093	3300005764	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWVHGDQIKHIEEEEDRLLDDV*
Ga0066903_1056920061	3300005764	Tropical Forest Soil	MVILSFLATVLWVAMLIGFLVAVFWAIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDE
Ga0075023_1001949501	3300006041	Watersheds	LWIAMLVGFIVAVFWVIATVVFIRGYKRWVHGHDQIKQVEAENDLIDDVLGR*
Ga0075023_1005664041	3300006041	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVGGHDQIKQVEAEEDLIDDVLGR*
Ga0075029_1002317453	3300006052	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHDQIKQVEAEDDLIDDVLGR*
Ga0075029_1012207151	3300006052	Watersheds	MVILSFLASVLWLAMLVGFIVVVFWVIATVVFIRGYKRWVHGHEQIKQNEAEEDLIDEALGR*
Ga0075026_1006727632	3300006057	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIASVVFIRGFKHWVHGHDQIKQIEAEEDLIDEALGR*
Ga0075017_1004835302	3300006059	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHDQIKQIEAEEDLIDEALGR*
Ga0075017_1008554941	3300006059	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWAIATVVFIRGFKHWVHGHDQIKQVEAEDDLIDDVLGR*
Ga0075030_1014108651	3300006162	Watersheds	MVILSFLASVLWLAMLVGFIVVVFWVIATVVFIRGYKRWVHGHEQIKPIEAEEDLIDEVLGR*
Ga0075014_1005170851	3300006174	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKRWVHGDPVEAEEDLIDDVLGR*
Ga0070712_1003149102	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVILSFLATMLWIAMLLGFLAAVFWVIAVVVFIRGFKRWVHGDEIKQIEDEI*
Ga0079222_105570752	3300006755	Agricultural Soil	MVILSFLATMLWIAMLLGFLVAVFWVIAVVVFIRGFRRWVHGDDQVKQIEEEEDRSASTSLNRRLVLSACPLCY*
Ga0126373_104300641	3300010048	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVTVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDFIEDTKSASLWREP*
Ga0126373_117930832	3300010048	Tropical Forest Soil	MLWVAMLLGFVVAVFWVIFIVVFIRGFKRWVHGDQIKQIEEEAEDLIDEGLRR*
Ga0126373_119579131	3300010048	Tropical Forest Soil	MVILSFLATMLWIAMILGFLIAVFWLIAVVVFIRGFKRWVGHEHDQIKQTEEDLIDEV*
Ga0126370_101735392	3300010358	Tropical Forest Soil	MMILSFLATMLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGLRR*
Ga0126370_102140092	3300010358	Tropical Forest Soil	MLWVAMLLGFVVAVFWVIFIVVFLRGFKRWVHGDQIKQIEEETEDLMDEVAQRN*
Ga0126370_122695331	3300010358	Tropical Forest Soil	ILSFLATMLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDKIKQIEEEAEDLIDESLRR
Ga0126370_123263162	3300010358	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLAAVFWLIAIVVFVRGFKRWVHGDQIKQIEEERT*
Ga0126376_123561721	3300010359	Tropical Forest Soil	MLWVAMLLGFVVAVFWVIFIVVFIRGFKRWVHGDQIKQIEEEAEDLMDESLGR*
Ga0126378_101152091	3300010361	Tropical Forest Soil	MVILSFLATVLWVAMLIGFLVAVFWAIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGL
Ga0126378_110257631	3300010361	Tropical Forest Soil	MLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGLRR*
Ga0126378_127903962	3300010361	Tropical Forest Soil	ATLLWIAMLIGFLVAVFWVIAIVVFVRGFKRFVHGDQIKHIEEKEDVA*
Ga0126381_1016299462	3300010376	Tropical Forest Soil	MVILHFLATLLWIAMLIGFLVAVFWVIAIVVFIRGYKRWVHGDDQIKQIEEELID*
Ga0126381_1029737972	3300010376	Tropical Forest Soil	MLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDESLRR*
Ga0124850_10410273	3300010863	Tropical Forest Soil	MVILHFLATLLWIAMLIGFLVAVFWTIAIVVFVRGFKRFVHGDQIKEIEEKEDVA
Ga0153928_11199912	3300012677	Attine Ant Fungus Gardens	MVILSFLASVLWVAMLVGFIVAVFWVIATVVFIRGYKRWVHGHEQIKQNEAEEDLIDEALGR*
Ga0126369_108718263	3300012971	Tropical Forest Soil	MLWVAMLLGFVVAVFWVIFIVVFIRGFKRWVHGDQIKQIEEETEDLMDEVAQRN*
Ga0126369_118639991	3300012971	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFIRGYKRWIHGDQIKRIEEEEDVA
Ga0182036_106548091	3300016270	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIEDT
Ga0182041_102294161	3300016294	Soil	MVILGFLGTLLWLAMLVGFLVAVFWVMVTVVFIRGYDRWAHGDRIKQIKQIEEEEDRSAVRRLLDDA
Ga0182041_113702111	3300016294	Soil	TLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLWRGP
Ga0182035_107553031	3300016341	Soil	MVILGFLGTLLWLAMLVGFLVAVFWVIVTVVFIRGYDRWAHGDRIKQIEEEEDRSAVR
Ga0182035_111702082	3300016341	Soil	MVILHFLATLLWIAMLICFLVAVFWMIAIVVFVRGFKRFVHGDQIKHTEEKEDVAH
Ga0182035_118471401	3300016341	Soil	LATLLWIAMLIGFVVAVIWVIGIVVFVRGFKRLVHGDQIKQLKEEEDRSESPSF
Ga0182035_121021632	3300016341	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWARGDQIKHIEEEEDRLLHDV
Ga0182035_121330991	3300016341	Soil	MVILSFLATLLGIAMLIGFLVAVFWVIAVVLFIRGFKRWVHGDQIKQIEEDLIEDTKSAS
Ga0182032_113729581	3300016357	Soil	LATMLWVAMLIGFLIAVFWVVVVVVLIRGYRRWVHEDDQIKQIEEEEDLDESLGR
Ga0182034_112733322	3300016371	Soil	MVILSFLATLLWMAMLIGFLFAVFWVIAIVVFVRGFKRWVHGDQIKQIE
Ga0182034_115306662	3300016371	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIATVVFIRGFKRWVRGDQIKHIEEEEDRLLDDV
Ga0182040_106456581	3300016387	Soil	MVILSFLATLLWIAMLIGFLFAVFWVIAVVVFIRGFKRWVHGDQIKQIEGEDRSAY
Ga0182039_105794012	3300016422	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIVDTNSASLWREP
Ga0182039_115344871	3300016422	Soil	MVILSFLATLLWIAMLIGFLFAVFWVIAVVVFIRGFKRWVHGDQIKQIE
Ga0182039_118194631	3300016422	Soil	MAILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0182038_107924553	3300016445	Soil	LWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0187802_100030396	3300017822	Freshwater Sediment	MVILSFLATILWLAMLLGFIVAVFWVIVTLVFIRGYNRWVHGDEIKQIEEDEDRDAVRGALDDAE
Ga0187802_100197492	3300017822	Freshwater Sediment	MVILSFLASVLWIAMLIGFIVAVFWVIATVVFIRGFKHWVHGHDEIKPIEAEEDLIDEVLGR
Ga0187802_102973891	3300017822	Freshwater Sediment	MVILSFLASMLWLAMLVGFIVAVFWVIATVVFIRGFKHWAHGHEQIKQNEAEEDLIDEVLGR
Ga0187820_12162822	3300017924	Freshwater Sediment	MVILSFLASVLWIAMLIGFIVAVFWVIATVVFIRGFKHWAHGHDEIKPIEAEEDLIDEVLGR
Ga0187806_10522102	3300017928	Freshwater Sediment	MVILSFLASMLWLAMLVGFIVAVFWVIATVVFIREFKHWAHGHEQIKQNEAEEDLIDEVLGR
Ga0187806_11370162	3300017928	Freshwater Sediment	MVILSFLATMLWLAMLLGFIVAVFWVIVTVVFIRGYNRWVHGDEIKQIVEDEDRDAVRGVLDDAE
Ga0187801_100682661	3300017933	Freshwater Sediment	MVILSFLASMLWLAMLVGFIVAVFWVIATVVFIRGFKHWAHGHEQIKQNEAEEDL
Ga0187808_103837541	3300017942	Freshwater Sediment	MVILSFLASVLWVAMLVGFIVAVFWVIATLVFIRGFKRWVHGDPVEAEEDLIDDVLGR
Ga0187819_108576122	3300017943	Freshwater Sediment	MLWLAMLLGFIVAVFWVIVTLVFIRGYNRWVHGDEIKQIEEDEDRDAVRGALDDAE
Ga0187817_109499961	3300017955	Freshwater Sediment	MVILSFLASMLWLAMLVGFIVAVFWVIATVVFIRGFKHWAHGHEQIKQNEAEEDLFDEVLGR
Ga0187778_112919462	3300017961	Tropical Peatland	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDDQIKQIERDLIEDIKSASLWRGL
Ga0187783_100310102	3300017970	Tropical Peatland	MVILHFLATLLWIAMLIGFVVAVIWVIAIAVFVRGFKRWVRGDEVKQIEEEEDRSEARRWLDDA
Ga0187783_100380934	3300017970	Tropical Peatland	MMVILNFLITLLWRAMLIGFVVAVIWVIAIAVFVRGFKRWVHGDEIKQIEEKEDQSAVRRWLDDG
Ga0187780_102885963	3300017973	Tropical Peatland	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDDQIKQIEKDLIEDIKSASLWRGL
Ga0187777_111671331	3300017974	Tropical Peatland	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEELIDDVYGR
Ga0187816_102838731	3300017995	Freshwater Sediment	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWAHGHDEIKPIEAEEDLIDEVLGR
Ga0187766_109896621	3300018058	Tropical Peatland	MVILGFLGTLLWLAMLVGFLVAVFWVIVTLVFIRGYDRWAHGDRIKQIEEEEDRSAVRRLLDDA
Ga0210399_105980272	3300020581	Soil	MVILSFLASVLWVAMLVGFIVAVFWVIATVVFIRGFKHWVGGHDQIKQVEAEEDLIDDVLGR
Ga0210408_109317232	3300021178	Soil	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVGGHDQIKQVEAEEDLIDDVLGR
Ga0126371_100242505	3300021560	Tropical Forest Soil	MAILSFLATLLWIAMLIGFLVAVFWMIAIVVFVRGFKRWVHGDQIKQIEEDEDLAY
Ga0126371_101011646	3300021560	Tropical Forest Soil	MVILHFLATLLWIAMLIGFLVAVFWTIAIVVFGRGFKRFVHGDQIKEIEEKEDVAH
Ga0126371_108836722	3300021560	Tropical Forest Soil	MMILSFLATMLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGLRR
Ga0126371_110458632	3300021560	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWVHGDQIKQIEEEEDLIDDVYG
Ga0126371_111714561	3300021560	Tropical Forest Soil	MVILSFLATVLWVAMLIGFLVAVFWAIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDEGLRR
Ga0126371_114679171	3300021560	Tropical Forest Soil	MVILSFLATMLWVAMLIGFLVAVFWGIFIVVFVRGFKRWVHGDQIKQIEEEAEDLIDESLRR
Ga0126371_116991212	3300021560	Tropical Forest Soil	VMMILSFLATMLWVAMLIGFLVAVCGGIFIVVFVRGFKRWVHGDKIKQIEEEAEDLIDESLR
Ga0207693_106389933	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MVILSFLATMLWIAMLLGFLAAVFWVIAVVVFIRGFKRWVHGDEIKQIEDEI
Ga0207765_1081383	3300026819	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWIHGDQIKQIEEDLIEDTKSASLWREP
Ga0207760_1046063	3300026845	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWMIATVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASPWRGL
Ga0207859_10096281	3300026859	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDDQIKQIEEDLI
Ga0207785_10169373	3300026872	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFVRGFKRWVHGDQIKQIEEEEDRPPDVAF
Ga0207852_10305972	3300026959	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFVRGFKRWVHGDQIKQIEEEKDPSL
Ga0207784_10069133	3300026997	Tropical Forest Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQTKQIEEDLIEDTKSASLWREP
Ga0209067_107908452	3300027898	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHDQIKQVEAEDDLIDDVLGR
Ga0209583_102785261	3300027910	Watersheds	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHDQIKQVEAENDLIDDVLGR
Ga0170834_1114313931	3300031057	Forest Soil	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHEQIKQNEAEEDLIDEVLGR
Ga0170823_115158361	3300031128	Forest Soil	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGYKRWVHGHEQIKQNEAEEDLIDEVLGR
Ga0170824_1284093261	3300031231	Forest Soil	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWVHGHEQIKQNEAEEDLIDEALGR
Ga0310915_100516552	3300031573	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFVRGFKRLVHGDQIKQIEEEEDRSAVRRG
Ga0310915_103629352	3300031573	Soil	MVILSFLATLLWIAMLVGFLVAVFWVVAVVVFIRGFKRWVHGDDQIKQIEEDLIEDTKSASRWRGS
Ga0310915_105407842	3300031573	Soil	MVILGFLGTLLWLAMLVGFLVAVFWVIVTVVFIRGYDRWAHGDRIKQIKQIEEEEDRSAVRRLLDDA
Ga0310915_107068822	3300031573	Soil	MVILSFLATLLGIAMLIGFLVAVFWVIAVVLFIRGFKRWVHGDQIKQIEEDLIEDTK
Ga0318574_105542472	3300031680	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLWRGP
Ga0310686_1019736262	3300031708	Soil	MVILSFLATMLWVAMVLGFLVAVFWVIAIVVLKRGYKRWVHEDGQIKQIEEEEDLIDDV
Ga0310686_1085266162	3300031708	Soil	MVILSFLATMLWVAMLLGFLVAVFWVIAIVVFIRGYKRWVHEHDQIKQIEEEEDLIDDV
Ga0310686_1101470984	3300031708	Soil	MVILSFLASVLWIAMLVGFIVAVFWVIATVVFIRGFKHWAHGHDEIKPIEAEEDLID
Ga0310686_1140539576	3300031708	Soil	MVILSFLATMLWVAMLLGFIVAVFWVIVTVVFIRGYNRWVHEHDQIKQIEAEEDLIDDA
Ga0306917_104268513	3300031719	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDQIKQIEEDLMEDTKSASLWR
Ga0318501_105101901	3300031736	Soil	MVILSFLATLLWIAMLIGLLVAVFWVIATVVFIRAFKRWVHGDQIKQIEEDEDRSATY
Ga0318502_103083373	3300031747	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRFVHGDQI
Ga0307475_103239742	3300031754	Hardwood Forest Soil	MVILSFLATMLWIAMLVGFLVAVFWVIAIVVFIRGFKRWVHGDDQIKQIEEEEDQSASTSLNRR
Ga0318509_102253742	3300031768	Soil	WIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0310917_102040011	3300031833	Soil	MVILSFLATLLWIAMLVGFLVAVFWVVAVVVFIRGFKRWVHGDDQIKQIEE
Ga0306925_108683842	3300031890	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVAFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0306923_101814846	3300031910	Soil	AMVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0306923_111295122	3300031910	Soil	MVILGFLGTLLWLAMLVGFLVAVFWVIVTVVFIRGYDRWAHGDRIKQIEEEEDRSAVRRLLDDA
Ga0306921_109338422	3300031912	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWVLGDQIKHIEEEEDRLLDDV
Ga0310912_107677102	3300031941	Soil	MVILSFLATLLGIAMLIGFLVAVFWVIAVVLFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWREP
Ga0310912_113674952	3300031941	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFIRGFKRWVHGDQIKQIEEEEDL
Ga0310916_102291303	3300031942	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAIVVFIRGFKRWVHGDQIKQIEEEEDLIDDVYG
Ga0310916_104875591	3300031942	Soil	MVILSFLATLLGIAMLIGFLVAVFWVIAVVLFIRGFKRWVHGDQIKQIEEDLIEDTKSASLWRE
Ga0310916_114652671	3300031942	Soil	MAILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRLVHGDDQIKQIEGEADRSEPGR
Ga0310913_105220882	3300031945	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWVHGDQIKHIEEEEDRLLDDV
Ga0310909_107358783	3300031947	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDQIEEEEDRL
Ga0306926_129889711	3300031954	Soil	MVILGFLATLLWIAMLIGFLVAVFWLIAIVIFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLLRGP
Ga0318530_102348392	3300031959	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVIFVRGFKRWVHGDDQIKQIEEDLIEDTKSASRWRGS
Ga0307479_115438471	3300031962	Hardwood Forest Soil	SFLATMLWIAMLVGFLVAVFWVIAIVVFIRGFKRWVHGDDQIKQIEEEEDQSASTSLNRR
Ga0306922_116400811	3300032001	Soil	MVILSFLATLLWMAMLIGFLVAVLWVIAVVVFIRGFKRLVHGDDQIKQNRRGSGAI
Ga0318514_105581001	3300032066	Soil	MVIISFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLWRGP
Ga0306924_112913932	3300032076	Soil	MVILSFLATLVWMAMLIGFLVAVFWVIAVVVFIRGFKRLVHGDDQIKQIEGEA
Ga0306924_113329481	3300032076	Soil	ALDHRDARDDDVSKEGAMVILSFLATLLWIAMLIGFLVAVFWLIAIVVFIRGFKRWVHGDQIKHIEEEEDRLLDDV
Ga0318577_104210842	3300032091	Soil	SFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDEDRSATY
Ga0318540_106483252	3300032094	Soil	MVILSFLATLLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLLRGP
Ga0307472_1018259412	3300032205	Hardwood Forest Soil	ASVLWIAMLVGFIVVVFWVVATVVFIRGYKRWVHGHEQIKQNEAEEDLIDEALGR
Ga0306920_1002655865	3300032261	Soil	MVILSFLATLLWMAMLIGFLFAVFWVIAIVVFVRGFKRWVHGDQIKQIEDEEELLTKPR
Ga0306920_1010907624	3300032261	Soil	MVILSFLATLLWIAMLIGFLVAVFWVIAVVVFIRGFKRWVHGDQIKQIEEDLIE
Ga0306920_1017548432	3300032261	Soil	MVILSFLAALLWIAMLIGFLVAVFWLIAIVVFVRGFKRWVHGDDQIKQIEEDLIEDTKSASLWRGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053460

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences