Metagenome / Metatranscriptome Family F054071

Basic Information
Family ID	F054071
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	60 residues
Representative Sequence	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALGLARAKLQEADQKKNRVA
Number of Associated Samples	123
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.88 %
% of genes near scaffold ends (potentially truncated)	31.43 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Bacteria (54.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.286 % of family members)
Environment Ontology (ENVO)	Unclassified (23.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.143 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.32% β-sheet: 0.00% Coil/Unstructured: 43.68%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.183.1.1: Nop domain	d2ozbb1	2ozb	0.88323
e.32.1.1: Phase 1 flagellin	d1io1a_	1io1	0.86375
a.2.14.1: DnaK suppressor protein DksA, alpha-hairpin domain	d1tjla1	1tjl	0.85068
a.24.8.1: Proteasome activator	d1yaro_	1yar	0.84017
a.2.7.4: Methicillin resistance protein FemA probable tRNA-binding arm	d1lrza1	1lrz	0.84007

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00027	cNMP_binding	2.86
PF01124	MAPEG	1.43
PF00072	Response_reg	0.71
PF00571	CBS	0.71
PF11412	DsbC	0.71
PF09397	FtsK_gamma	0.71
PF00011	HSP20	0.71
PF11149	DUF2924	0.71
PF02826	2-Hacid_dh_C	0.71
PF09335	SNARE_assoc	0.71
PF13704	Glyco_tranf_2_4	0.71
PF00589	Phage_integrase	0.71
PF04832	SOUL	0.71
PF01479	S4	0.71
PF05957	DUF883	0.71
PF04519	Bactofilin	0.71
PF05711	TylF	0.71
PF01548	DEDD_Tnp_IS110	0.71
PF01098	FTSW_RODA_SPOVE	0.71
PF09948	DUF2182	0.71
PF12833	HTH_18	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.71
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.71
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	0.71
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.71
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.71
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.71
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.71

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.29 %
Unclassified	root	N/A	45.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.29 %
Unclassified	root	N/A	45.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.29 %
Unclassified	root	N/A	45.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.86 %
Unclassified	root	N/A	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.86 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	12.14 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.86 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.43 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.71 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	5.71 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.86 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.86 %
Oricola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Oricola	1.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.71 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.71 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.71 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.86 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1.43 %
Oricola indica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Oricola → Oricola indica	1.43 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.71 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459021\|G14TP7Y02FTQ4Y	Not Available	638	Open in IMG/M
3300000881\|JGI10215J12807_1092446	Not Available	526	Open in IMG/M
3300000881\|JGI10215J12807_1349125	Not Available	530	Open in IMG/M
3300000891\|JGI10214J12806_10848045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1215	Open in IMG/M
3300000953\|JGI11615J12901_10117688	Not Available	997	Open in IMG/M
3300004005\|Ga0055448_10178281	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300004006\|Ga0055453_10123475	Not Available	778	Open in IMG/M
3300004114\|Ga0062593_100844051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	918	Open in IMG/M
3300004114\|Ga0062593_101391376	Not Available	749	Open in IMG/M
3300004156\|Ga0062589_100742403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300004156\|Ga0062589_101008042	Not Available	779	Open in IMG/M
3300004156\|Ga0062589_102441863	Not Available	540	Open in IMG/M
3300004157\|Ga0062590_101573191	Not Available	663	Open in IMG/M
3300004800\|Ga0058861_11969354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300004803\|Ga0058862_12816656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300005045\|Ga0071328_174996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2413	Open in IMG/M
3300005093\|Ga0062594_101578432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	678	Open in IMG/M
3300005294\|Ga0065705_10259951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1165	Open in IMG/M
3300005332\|Ga0066388_108202421	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005333\|Ga0070677_10233152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300005355\|Ga0070671_101609553	Not Available	576	Open in IMG/M
3300005365\|Ga0070688_101357921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300005440\|Ga0070705_101230552	Not Available	618	Open in IMG/M
3300005445\|Ga0070708_101166665	Not Available	721	Open in IMG/M
3300005455\|Ga0070663_100851407	Not Available	785	Open in IMG/M
3300005536\|Ga0070697_102063267	Not Available	510	Open in IMG/M
3300005577\|Ga0068857_100727523	Not Available	944	Open in IMG/M
3300005843\|Ga0068860_100044099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4251	Open in IMG/M
3300005983\|Ga0081540_1162303	Not Available	865	Open in IMG/M
3300006049\|Ga0075417_10361515	Not Available	713	Open in IMG/M
3300006358\|Ga0068871_101402007	Not Available	659	Open in IMG/M
3300006636\|Ga0075525_10080792	Not Available	623	Open in IMG/M
3300006755\|Ga0079222_10038070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2128	Open in IMG/M
3300006806\|Ga0079220_10034829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2263	Open in IMG/M
3300006806\|Ga0079220_11059591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	651	Open in IMG/M
3300006806\|Ga0079220_12005306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	516	Open in IMG/M
3300006852\|Ga0075433_10594697	Not Available	971	Open in IMG/M
3300006854\|Ga0075425_100571835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300006871\|Ga0075434_101161357	Not Available	785	Open in IMG/M
3300006969\|Ga0075419_10400466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	940	Open in IMG/M
3300007076\|Ga0075435_100674843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	898	Open in IMG/M
3300009011\|Ga0105251_10249650	Not Available	800	Open in IMG/M
3300009092\|Ga0105250_10045508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1759	Open in IMG/M
3300009094\|Ga0111539_10115556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3147	Open in IMG/M
3300009101\|Ga0105247_10851966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	700	Open in IMG/M
3300009101\|Ga0105247_11126697	Not Available	620	Open in IMG/M
3300009147\|Ga0114129_11410288	Not Available	859	Open in IMG/M
3300009147\|Ga0114129_13074380	Not Available	546	Open in IMG/M
3300009156\|Ga0111538_10171683	All Organisms → cellular organisms → Bacteria	2753	Open in IMG/M
3300009162\|Ga0075423_10648840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1113	Open in IMG/M
3300009176\|Ga0105242_12956010	Not Available	526	Open in IMG/M
3300009553\|Ga0105249_11268652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300010047\|Ga0126382_10110217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1801	Open in IMG/M
3300010166\|Ga0126306_11707530	Not Available	526	Open in IMG/M
3300010360\|Ga0126372_10914171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	881	Open in IMG/M
3300010373\|Ga0134128_11311790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	798	Open in IMG/M
3300010376\|Ga0126381_105124255	Not Available	502	Open in IMG/M
3300010396\|Ga0134126_11341558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300012209\|Ga0137379_10588362	Not Available	1020	Open in IMG/M
3300012884\|Ga0157300_1008167	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300012898\|Ga0157293_10016986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1294	Open in IMG/M
3300012899\|Ga0157299_10365252	Not Available	500	Open in IMG/M
3300012904\|Ga0157282_10269176	Not Available	585	Open in IMG/M
3300012908\|Ga0157286_10038496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1165	Open in IMG/M
3300012914\|Ga0157297_10151096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300012915\|Ga0157302_10106528	Not Available	893	Open in IMG/M
3300012931\|Ga0153915_12280328	Not Available	633	Open in IMG/M
3300012948\|Ga0126375_10426056	Not Available	967	Open in IMG/M
3300012955\|Ga0164298_10134132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1366	Open in IMG/M
3300012957\|Ga0164303_11367654	Not Available	528	Open in IMG/M
3300012958\|Ga0164299_10612132	Not Available	747	Open in IMG/M
3300012960\|Ga0164301_10558764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	837	Open in IMG/M
3300012971\|Ga0126369_10022473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5077	Open in IMG/M
3300012971\|Ga0126369_13235464	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012989\|Ga0164305_10490751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	964	Open in IMG/M
3300014497\|Ga0182008_10467980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300014823\|Ga0120170_1067303	Not Available	764	Open in IMG/M
3300014969\|Ga0157376_10810748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	949	Open in IMG/M
3300015077\|Ga0173483_10855887	Not Available	531	Open in IMG/M
3300015371\|Ga0132258_12329288	Not Available	1343	Open in IMG/M
3300015371\|Ga0132258_12759397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1224	Open in IMG/M
3300015373\|Ga0132257_104441163	Not Available	510	Open in IMG/M
3300015374\|Ga0132255_102254578	Not Available	831	Open in IMG/M
3300015374\|Ga0132255_103005490	Not Available	720	Open in IMG/M
3300015374\|Ga0132255_103408018	Not Available	677	Open in IMG/M
3300016445\|Ga0182038_10642911	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300017792\|Ga0163161_10084887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2335	Open in IMG/M
3300018027\|Ga0184605_10347603	Not Available	670	Open in IMG/M
3300018028\|Ga0184608_10319207	Not Available	682	Open in IMG/M
3300018053\|Ga0184626_10119717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1118	Open in IMG/M
3300018061\|Ga0184619_10350199	Not Available	674	Open in IMG/M
3300018071\|Ga0184618_10144223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	968	Open in IMG/M
3300018076\|Ga0184609_10172106	Not Available	1003	Open in IMG/M
3300018422\|Ga0190265_11246571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	861	Open in IMG/M
3300018429\|Ga0190272_10770518	Not Available	880	Open in IMG/M
3300018476\|Ga0190274_11411642	Not Available	786	Open in IMG/M
3300019279\|Ga0184642_1531698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300019356\|Ga0173481_10039826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300019356\|Ga0173481_10042962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1518	Open in IMG/M
3300019361\|Ga0173482_10021349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1842	Open in IMG/M
3300019362\|Ga0173479_10470534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	626	Open in IMG/M
3300020070\|Ga0206356_11359354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300020078\|Ga0206352_10564621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300020080\|Ga0206350_11028697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300021078\|Ga0210381_10355951	Not Available	535	Open in IMG/M
3300021560\|Ga0126371_10041267	All Organisms → cellular organisms → Bacteria → Proteobacteria	4373	Open in IMG/M
3300021560\|Ga0126371_11771876	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300022892\|Ga0247753_1010856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300023266\|Ga0247789_1120956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300025721\|Ga0209587_1121918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	697	Open in IMG/M
3300025906\|Ga0207699_10655438	Not Available	767	Open in IMG/M
3300025925\|Ga0207650_10752577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300025927\|Ga0207687_11484277	Not Available	582	Open in IMG/M
3300025928\|Ga0207700_10774749	Not Available	857	Open in IMG/M
3300026067\|Ga0207678_11093007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300026116\|Ga0207674_10757148	Not Available	937	Open in IMG/M
3300027775\|Ga0209177_10126437	Not Available	842	Open in IMG/M
3300027880\|Ga0209481_10626539	Not Available	558	Open in IMG/M
3300027907\|Ga0207428_10386038	Not Available	1027	Open in IMG/M
3300028608\|Ga0247819_10750564	Not Available	600	Open in IMG/M
3300030006\|Ga0299907_10300568	Not Available	1309	Open in IMG/M
3300030620\|Ga0302046_10230193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1525	Open in IMG/M
3300030831\|Ga0308152_112032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300031058\|Ga0308189_10268139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300031274\|Ga0307442_1124841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Oricola → Oricola indica	735	Open in IMG/M
3300031331\|Ga0307432_1035113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Oricola → Oricola indica	1719	Open in IMG/M
3300031360\|Ga0307444_1037386	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300031563\|Ga0307436_1058922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1118	Open in IMG/M
3300031565\|Ga0307379_10491202	Not Available	1151	Open in IMG/M
3300031585\|Ga0315534_1002669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11819	Open in IMG/M
3300031698\|Ga0315537_1033675	Not Available	2979	Open in IMG/M
3300031698\|Ga0315537_1056565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2104	Open in IMG/M
3300032059\|Ga0318533_11377231	Not Available	515	Open in IMG/M
3300032261\|Ga0306920_101153519	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300032261\|Ga0306920_104201173	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300033412\|Ga0310810_10342614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300033475\|Ga0310811_10440650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1400	Open in IMG/M
3300033551\|Ga0247830_10409725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1056	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.29%
Host-Associated	Host-Associated	30.00%
Engineered	Engineered	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.43%
Plants	Host-Associated → Plants	28.57%
Aquatic	Environmental → Aquatic	12.86%
Human	Host-Associated → Human	1.43%
Solid Waste	Engineered → Solid Waste	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.29%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.57%
Marine	Environmental → Aquatic → Marine	6.43%
Sediment	Environmental → Aquatic → Sediment	4.29%
Freshwater	Environmental → Aquatic → Freshwater	2.14%
Digestive System	Host-Associated → Human → Digestive System	1.43%
Roots	Host-Associated → Plants → Roots	0.71%
Grass	Engineered → Solid Waste → Grass	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.71%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.00%
Loam	Environmental → Terrestrial → Soil → Loam	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.43%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.43%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.71%
Clay	Environmental → Terrestrial → Soil → Clay	0.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%
Composting	Engineered → Solid Waste → Grass → Composting	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.00%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.57%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.43%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.43%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.43%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.71%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	2.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.14%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.43%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.43%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.43%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.43%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.43%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.43%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.43%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004005	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006636	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025721	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031585	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40	Environmental	Open in IMG/M
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4NP_02486220	2170459021	Switchgrass, Maize And Mischanthus Litter	AEINTIISDHSDSDSEEEQEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ
JGI10215J12807_10924462	3300000881	Soil	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIALLKRARDALSLARAKLHEADVKKNRMA*
JGI10215J12807_13491252	3300000881	Soil	SCMRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ*
JGI10214J12806_108480451	3300000891	Soil	TRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
JGI11615J12901_101176881	3300000953	Soil	MRTRIPKLIAEINTIIADHSRSDSKEEREAIDLLKRARDALSVARAKLQEADVKKNRS*
Ga0055448_101782812	3300004005	Natural And Restored Wetlands	MHTRIPKLIAEINTIIADHSSCDVVEEQEAIDLLKRARHTLGLARVKLQQSDVKKNQLASGRANPP
Ga0055453_101234752	3300004006	Natural And Restored Wetlands	MRTRIPKVIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARVKLQEADLKKNRVA*
Ga0062593_1008440512	3300004114	Soil	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ*
Ga0062593_1013913762	3300004114	Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRLTVGQ*
Ga0062589_1007424031	3300004156	Soil	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLA
Ga0062589_1010080421	3300004156	Soil	IAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0062589_1024418631	3300004156	Soil	SAMRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
Ga0062590_1015731911	3300004157	Soil	MRTRIPKLIAEINTIIADHSETDSEEEEEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ*
Ga0058861_119693542	3300004800	Host-Associated	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQK
Ga0058862_128166562	3300004803	Host-Associated	MRTRIPKLIAEINTIIADHSGGSGSREEQEAINLLKRARHALGLATAKLQEAGQKKNRVA
Ga0071328_1749962	3300005045	Permafrost	MRTRIPKLIAEINTIIADHSSGDLKEEHEAINLLKRARHVLGLARAKLQEADLKKNRVA*
Ga0062594_1015784321	3300005093	Soil	MRTRIPKLIAEINTIVADYSDSDLEEVREAIELLKRARHKLGLARAKLHEADLKK
Ga0065705_102599512	3300005294	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALALARAKLQEADQKKHRVA*
Ga0066388_1082024211	3300005332	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA*
Ga0070677_102331522	3300005333	Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSRSDSKEEQEAIDLLKRARDALSVARAKLQEAD
Ga0070671_1016095532	3300005355	Switchgrass Rhizosphere	MRTHIPKLIAEINTIIADHSGGSGSGEEREVDLLKRARHTLALARAKLQEADQK
Ga0070688_1013579211	3300005365	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLHEADLKKH
Ga0070705_1012305521	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	TRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ
Ga0070708_1011666651	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RIPKLIAEINTIIADHSGGSGSREEREAIDLLKRARHTLALARAKLQEADQKKHRVA*
Ga0070663_1008514072	3300005455	Corn Rhizosphere	MRTRIPKLIAEINTIIADHSRSDSKEEQEAIDLLKRARDALSVARAKLQEADVKKNRS*
Ga0070697_1020632672	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALAKARLQEADQKKHRVA*
Ga0068857_1007275231	3300005577	Corn Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEA
Ga0068860_1000440993	3300005843	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
Ga0081540_11623031	3300005983	Tabebuia Heterophylla Rhizosphere	PKLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALNLARAKLHEADVKKNRMA*
Ga0075417_103615151	3300006049	Populus Rhizosphere	KGTICMRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARAKLQEADQKKHRVA*
Ga0068871_1014020072	3300006358	Miscanthus Rhizosphere	MRTRIPKLIAEINTIVADYSDSDLEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGQ*
Ga0075525_100807921	3300006636	Arctic Peat Soil	MRTRIPKLIAEINTIIADHSSGDLKEEHEVINLLKRARHVLGLARAKLQEADLKKNRVA*
Ga0079222_100380704	3300006755	Agricultural Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIGLLKRARHALALARAKLQEADQKKHRLAAGQ*
Ga0079220_100348294	3300006806	Agricultural Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIGLLKRARHALALARAKLQEADQKKHRVA*
Ga0079220_110595912	3300006806	Agricultural Soil	MRTRIPKLIAEINTIIADHSNCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ*
Ga0079220_120053062	3300006806	Agricultural Soil	MRTRIPKLIAEINTIVADHSDSDSEEEREAIELLKRARHKLGLARAKLQEADLKKH
Ga0075433_105946972	3300006852	Populus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0075425_1005718353	3300006854	Populus Rhizosphere	MRTRIPKLIAKINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
Ga0075434_1011613573	3300006871	Populus Rhizosphere	ICMRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0075419_104004662	3300006969	Populus Rhizosphere	MWTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
Ga0075435_1006748431	3300007076	Populus Rhizosphere	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRKA*
Ga0105251_102496501	3300009011	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARAKLQEADQKKHRVA*
Ga0105250_100455081	3300009092	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARTKLHEADVKKNRMA*
Ga0111539_101155565	3300009094	Populus Rhizosphere	TRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ
Ga0105247_108519661	3300009101	Switchgrass Rhizosphere	RIPKLIAEINTIIADHSRSDSKEEQEAIDLLKRARDALSVARAKLQEADVKKNRS*
Ga0105247_111266971	3300009101	Switchgrass Rhizosphere	IPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0114129_114102883	3300009147	Populus Rhizosphere	KLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0114129_130743802	3300009147	Populus Rhizosphere	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLASGQ*
Ga0111538_101716831	3300009156	Populus Rhizosphere	ICMRTRIPKLIAEINTIIADHSGSGSRGEQEAIDLLKRARHALALARAKLQEADQKKNRVA*
Ga0075423_106488401	3300009162	Populus Rhizosphere	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLVRAKLQEADQKKHRLAAGQ*
Ga0105242_129560101	3300009176	Miscanthus Rhizosphere	RGEIMRTRIPKLIAEINTIVADYSDSDLEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGQ*
Ga0105249_112686522	3300009553	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKKHRLAAGQ*
Ga0126382_101102173	3300010047	Tropical Forest Soil	MRTRIPKLIAEINTVIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRHPGLSVPRVP*
Ga0126306_117075301	3300010166	Serpentine Soil	MRTRIPKLIAEINTIIADHSSSDLKEEHEAIHLLKRARHTLGVARAKLQEADLKKNRVA*
Ga0126372_109141711	3300010360	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRHPGLSVPRVP*
Ga0134128_113117902	3300010373	Terrestrial Soil	VRTRIPKLIAEINTIIADHSNCDSEEEQEAIELPKWARHKLGLARAKLQEADQ
Ga0126381_1051242551	3300010376	Tropical Forest Soil	MRTRIPKLIAEINTSIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA*
Ga0134126_113415581	3300010396	Terrestrial Soil	MAEINTIIADHSGGSGSSEEREAIDLLKRARHTLALARAKLQEADQKKHRVA*
Ga0137379_105883621	3300012209	Vadose Zone Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ*
Ga0157300_10081673	3300012884	Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDILKRARHALALARAKLQEADQKNHRVA*
Ga0157293_100169862	3300012898	Soil	MGTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA*
Ga0157299_103652521	3300012899	Soil	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALGLARAKLHEADVKKNRMA*
Ga0157282_102691762	3300012904	Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALALARAKLQEADQKKHRLAAGQ*
Ga0157296_100354131	3300012905	Soil	TIIADHSHCDSEEEQEAIELLKRARHKLGLAGAKLQEADQKKHRLAAGQ*
Ga0157286_100384961	3300012908	Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALALARAKLQEADQKNHRVA*
Ga0157297_101510962	3300012914	Soil	VRTRIPKLIAEINTIIADHSGSGSREEREAINLLKRARHTLALARAKLQEAD
Ga0157302_101065282	3300012915	Soil	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKKNRVA*
Ga0153915_122803282	3300012931	Freshwater Wetlands	MRTRIPKLIAEINTIIADHSDSDSEEEQEAIELLKRARHKLGLARAKLQEADLKKHRLRSIAVR*
Ga0126375_104260562	3300012948	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRLTVAQ*
Ga0164298_101341322	3300012955	Soil	MRTRIPKLIAEINARIADYSDNDSEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGH*
Ga0164303_113676541	3300012957	Soil	MRTRIPKLIAEINTIVADYSDSDLEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGH*
Ga0164299_106121321	3300012958	Soil	MRTRIPKLIAEINTIVADYSDNDSEEVREAIELLKRARHKLGLARAKLHEADLKKHPLAAGH*
Ga0164301_105587643	3300012960	Soil	MRTRIPKLIAEINTIVADYSDNDSEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGQ*
Ga0126369_100224734	3300012971	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADVKKHRLTVGQ*
Ga0126369_132354642	3300012971	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSRSDSKEEKEAVDLLKRARDALSLARAKLQEADVKKNRMA*
Ga0164305_104907512	3300012989	Soil	MRTRIPKLIAEINTIVADYSDNDSEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGH*
Ga0182008_104679802	3300014497	Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARAKLQEADRKK
Ga0120170_10673032	3300014823	Permafrost	MRTRIPKLIAEINTIIADHSDSDSEEEQEAIELLKRARHKLGLARVKLQEADLKKHRLAAGL*
Ga0157376_108107481	3300014969	Miscanthus Rhizosphere	MRTRIPKLIAEINTIVADYSDSDSEEVREAIELLKRARHKLGLARAKLHEADLKKHPLVAGQ*
Ga0173483_108558871	3300015077	Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALGLARAKLQEADQKKNRVA*
Ga0132258_123292881	3300015371	Arabidopsis Rhizosphere	NTIVADYSDSDSEEVREAIELLKRARHELGLARAKLHEADLKKHPLVAGQ*
Ga0132258_127593972	3300015371	Arabidopsis Rhizosphere	MRTRIPKLIADINTIIADHSKCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ*
Ga0132257_1044411631	3300015373	Arabidopsis Rhizosphere	MRTRIPKLIAEINTIVADHSDSDSEEEQEAIELLKRARHKLGLARAKLQEADLKKHRLAASNPTR*
Ga0132255_1016381451	3300015374	Arabidopsis Rhizosphere	DSEEVREAIELLKRARHELGLARAKLHEADLKKHPLVAGQ*
Ga0132255_1022545782	3300015374	Arabidopsis Rhizosphere	MRTRIPKLIDEINTIIADHSGGSGSREEREAIDLLKRARHTLALARAKLQEADQKKHRVA
Ga0132255_1030054901	3300015374	Arabidopsis Rhizosphere	NGENIMRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRLTVGQ*
Ga0132255_1034080181	3300015374	Arabidopsis Rhizosphere	MRTRIPKLIAEINTIIADHSKCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ*
Ga0182038_106429111	3300016445	Soil	MRTRVPKLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA
Ga0163161_100848875	3300017792	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMHSWLMK
Ga0184605_103476032	3300018027	Groundwater Sediment	MRTRIPKLIAEINTIIADHSGSDSKEEQEAIDLLKRARQTLGVARAKFQEADLKKNRVA
Ga0184608_103192072	3300018028	Groundwater Sediment	MRTRIPKLIAEINTIIADHGGSDSKEEQEAIDLLKRARHTLGVARAKLQEADLKKNRVA
Ga0184626_101197172	3300018053	Groundwater Sediment	MRTRIPKLIAEINTIIADHSSGDLKEEHEAINLLKRARHVLGLARAKLQEADLKKNRVA
Ga0184619_103501992	3300018061	Groundwater Sediment	MRTRIPKLIAEINTIIADHSGSDSKEEQEAIDLLKRARHTLGVARAKLQEADLKKHRVA
Ga0184618_101442231	3300018071	Groundwater Sediment	MRTRIPKLIAEINTIIADRSGSDSKEEQEAINLLKRARHTLGVARAKLQEADLKKNRVA
Ga0184609_101721061	3300018076	Groundwater Sediment	MRTRIPKLIAEINTIITDHSNSDLAEEQEAIDLLKRARHNLGLARVKLQEADLKKNRVASGQ
Ga0190265_112465711	3300018422	Soil	MRTRIPKLIAEINTIIADHSSGDLKEEHEAINLLKRAGHVLGLARAKLQEADLKKNRVA
Ga0190272_107705181	3300018429	Soil	MRTRIPKLIAEINTIIADRSGSDSKEEQEAINLLKRARHTLGVARAKLQEADLKKNRVG
Ga0190274_114116422	3300018476	Soil	MRTRIPKLIAEINAIIADHSSSSDLKEEHEAIHLLKRARHVLGLARAKLQEADLKKNRVA
Ga0184642_15316981	3300019279	Groundwater Sediment	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARVRLQEADQKKHR
Ga0173481_100398262	3300019356	Soil	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKKHRLAAGQ
Ga0173481_100429623	3300019356	Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALALARAKLQEADQKNHRVA
Ga0173482_100213493	3300019361	Soil	MRTRIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA
Ga0173479_104705341	3300019362	Soil	EINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA
Ga0206356_113593541	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEGEAIDLLKRARHALGLARAKLQEADQKKN
Ga0206352_105646211	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALGLARAKLQEADQKKNRVA
Ga0206350_110286972	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSRDEQEAINLLKRARHALGLAAAKLQEADQKKNRVA
Ga0210381_103559512	3300021078	Groundwater Sediment	MRTRIPKLIAEINTIIADHSGSDSKEEQEAIDLLKRARHTLGVARAKLQEADLKKNRVA
Ga0126371_100412674	3300021560	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRLTVGQ
Ga0126371_117718762	3300021560	Tropical Forest Soil	MRTRIPKLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA
Ga0247753_10108561	3300022892	Soil	MRTRIPKLIAEINTIIADHSHCDSEEEQEAIELLKRARHKLGLARAKLQEADQKNHRVA
Ga0247789_11209561	3300023266	Soil	MRTRIPKLIAEINTIIADHGRNDSKEEKEAIDLLKRARDALSLARAKLHEADV
Ga0209587_11219181	3300025721	Arctic Peat Soil	HHHEPCQVQRRMCMRTRIPKLIAEINTIIADHSSGDLKEEHEAINLLKRARHVLGLARAKLQEADLKKNRVA
Ga0207699_106554381	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIVADHSDSDSEEEQAAIELLKRARHKLGQARVKLQEADLKKHRLTVGQ
Ga0207650_107525772	3300025925	Switchgrass Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEGEAIDLLKRARHALGLARAKLQEADQKKNR
Ga0207687_114842771	3300025927	Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRV
Ga0207700_107747492	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARAKLQEADQKKHRVA
Ga0207678_110930072	3300026067	Corn Rhizosphere	MRTRIPKLIAEINTIVADYSDSDSEEVREAIELLKRARHKLGLARAKLHEADLKKHLLVAGQ
Ga0207674_107571482	3300026116	Corn Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKKHRLAAGQ
Ga0209177_101264371	3300027775	Agricultural Soil	MRTRIPKLIAEINTIIADHSGSGSREEQEAIGLLKRARHALALARAKLQEADQKKHRVA
Ga0209481_106265391	3300027880	Populus Rhizosphere	RIPKLIAEINTIIADHSRNDSKEEKEAIDLLKRARDALSLARAKLHEADVKKNRMA
Ga0207428_103860382	3300027907	Populus Rhizosphere	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHALALARAKLQEADQKNHRVA
Ga0247819_107505641	3300028608	Soil	MRTRIPKLIAEINTIISDHSDSDSEEEQEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ
Ga0299907_103005683	3300030006	Soil	MRTRIPKLIAEINTIIADHSSSDLKEEHEAIHLLKRARHTLGLARAKLQEADLKKNRVA
Ga0302046_102301931	3300030620	Soil	MRTRIPKLIAEINTIIADHSSSDLKEEHEAVHLLKRARHTLGLARAKLQEADLKKNRVA
Ga0308152_1120322	3300030831	Soil	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARVRLQE
Ga0308189_102681392	3300031058	Soil	MRTRIPKLIAEINTIIADHSGSGSREEREAIDLLKRARHTLALARAKLQEADLKKHRLAAGQ
Ga0307442_11248412	3300031274	Salt Marsh	MRTRIPKLIAEINTIIADHSNCNVAEEQEAIELLKRTRHTLGLARVKLQESDVKKNPVASGRVNPPPEEPKSPGQR
Ga0307432_10351133	3300031331	Salt Marsh	MRTRIPKLIAEINTIIADHSNCNVAEEQEAIELLKRTRHTLGLARVKLQESDVKKNPVASGRVNP
Ga0307444_10373862	3300031360	Salt Marsh	MRTGIPKLMAEINTVIADHGNQDSAEEQEAIDLLKQARRALNLARAKLQEADLRKNQGRRSRLSGSP
Ga0307436_10589222	3300031563	Salt Marsh	MRTGIPKLMAEINTVIADHGNQDSAEEQQAIDLLKQARRALNLARAKLQEADLRKNQGRRSRLSGSP
Ga0307379_104912022	3300031565	Soil	MRTRIPKLTAEINTIIADHSNSDLAEEQEAIDLLKRAKRALNLARAKLQEADVKSAPIARDNTQRS
Ga0315534_100266922	3300031585	Salt Marsh Sediment	MRTRIPKLTAEINTIIADHSNSELAEEQEAIDLLKRAKRALNLARAKLQEADVKSAPIARDNTQRS
Ga0315537_10336756	3300031698	Salt Marsh Sediment	MRTRIPKLIAEINTIIADHSNNDLAEEQEAIALLKRARHALNLARVKLQEADLKKNPVASGRRSRLSGSP
Ga0315537_10565654	3300031698	Salt Marsh Sediment	MLTRIPKLMAEINTIIADHSNQDSGEEQEAIDLLRQARRALNLARAKLQEADLRKNQGASSGRSHLSGSP
Ga0318533_113772311	3300032059	Soil	MRTRIPKLIAEINAIIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA
Ga0306920_1011535191	3300032261	Soil	MRTRIPKLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALGLARAKLQEADVKKNRMA
Ga0306920_1042011732	3300032261	Soil	KLIAEINTIIADHSRSDSKEEKEAIDLLKRARDALSLARAKLQEADVKKNRMA
Ga0310810_103426141	3300033412	Soil	MRTRIPKLIAEINTIIADHSETDSEEEEEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ
Ga0310811_104406501	3300033475	Soil	RIPKLIAEINTIIADHSETDSEEEEEAIELLKRARHKLGLARVKLQEADLKKHRLAAGQ
Ga0247830_104097253	3300033551	Soil	PKLIAEINTIIADHSGSGSREEQEAIDLLKRARHALALARAKLQEADQKKHRVA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054071

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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