NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F054170

Metagenome Family F054170

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F054170
Family Type Metagenome
Number of Sequences 140
Average Sequence Length 50 residues
Representative Sequence MNVTIGLEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Number of Associated Samples 108
Number of Associated Scaffolds 140

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 61.43 %
% of genes near scaffold ends (potentially truncated) 47.14 %
% of genes from short scaffolds (< 2000 bps) 79.29 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.429 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil
(13.571 % of family members)
Environment Ontology (ENVO) Unclassified
(37.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(45.714 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.32%    β-sheet: 0.00%    Coil/Unstructured: 74.68%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.19
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 140 Family Scaffolds
PF13505OMP_b-brl 9.29
PF04392ABC_sub_bind 7.86
PF02265S1-P1_nuclease 3.57
PF14534DUF4440 2.86
PF07886BA14K 2.86
PF00501AMP-binding 2.14
PF01717Meth_synt_2 2.14
PF04964Flp_Fap 2.14
PF07568HisKA_2 1.43
PF00571CBS 1.43
PF09361Phasin_2 1.43
PF16868NMT1_3 0.71
PF00011HSP20 0.71
PF09990DUF2231 0.71
PF04773FecR 0.71
PF10947DUF2628 0.71
PF08031BBE 0.71
PF07589PEP-CTERM 0.71
PF13271DUF4062 0.71
PF02113Peptidase_S13 0.71
PF04214DUF411 0.71
PF00089Trypsin 0.71
PF13282DUF4070 0.71

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 140 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 7.86
COG0620Methionine synthase II (cobalamin-independent)Amino acid transport and metabolism [E] 2.14
COG3847Flp pilus assembly protein, pilin FlpExtracellular structures [W] 2.14
COG3920Two-component sensor histidine kinase, HisKA and HATPase domainsSignal transduction mechanisms [T] 1.43
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.71
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 0.71
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.71
COG3019Uncharacterized metal-binding protein, DUF411 familyFunction unknown [S] 0.71


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.43 %
All OrganismsrootAll Organisms48.57 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886013|SwBSRL2_contig_6939094Not Available902Open in IMG/M
2228664021|ICCgaii200_c0884376All Organisms → cellular organisms → Bacteria → Proteobacteria1130Open in IMG/M
3300000041|ARcpr5oldR_c000421All Organisms → cellular organisms → Bacteria5708Open in IMG/M
3300000156|NODE_c0456791Not Available886Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101545755All Organisms → cellular organisms → Bacteria → Proteobacteria1152Open in IMG/M
3300000890|JGI11643J12802_10671315All Organisms → cellular organisms → Bacteria → Proteobacteria594Open in IMG/M
3300000891|JGI10214J12806_10999573All Organisms → cellular organisms → Bacteria → Proteobacteria531Open in IMG/M
3300000953|JGI11615J12901_11929941Not Available1313Open in IMG/M
3300002820|JGI25490J38602_10200Not Available526Open in IMG/M
3300003995|Ga0055438_10011143Not Available1844Open in IMG/M
3300004024|Ga0055436_10112859Not Available805Open in IMG/M
3300004058|Ga0055498_10012708Not Available1134Open in IMG/M
3300004114|Ga0062593_100114989All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1943Open in IMG/M
3300004114|Ga0062593_101601441All Organisms → cellular organisms → Bacteria → Proteobacteria707Open in IMG/M
3300004156|Ga0062589_100075324All Organisms → cellular organisms → Bacteria2030Open in IMG/M
3300004156|Ga0062589_100448299All Organisms → cellular organisms → Bacteria → Proteobacteria1068Open in IMG/M
3300004156|Ga0062589_100745360Not Available878Open in IMG/M
3300004156|Ga0062589_101533173Not Available657Open in IMG/M
3300004463|Ga0063356_100185258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2431Open in IMG/M
3300004463|Ga0063356_101391925All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300004463|Ga0063356_102738732Not Available759Open in IMG/M
3300004479|Ga0062595_100027348All Organisms → cellular organisms → Bacteria2284Open in IMG/M
3300004479|Ga0062595_100173736Not Available1292Open in IMG/M
3300004479|Ga0062595_101254825All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300005093|Ga0062594_100008940All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3457Open in IMG/M
3300005093|Ga0062594_100082962All Organisms → cellular organisms → Bacteria → Proteobacteria1828Open in IMG/M
3300005093|Ga0062594_101166370Not Available760Open in IMG/M
3300005093|Ga0062594_102920492Not Available533Open in IMG/M
3300005104|Ga0066818_1024045Not Available523Open in IMG/M
3300005183|Ga0068993_10125216Not Available846Open in IMG/M
3300005332|Ga0066388_101074588All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1359Open in IMG/M
3300005336|Ga0070680_100104131All Organisms → cellular organisms → Bacteria → Proteobacteria2358Open in IMG/M
3300005336|Ga0070680_100814620All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300005366|Ga0070659_101108260Not Available698Open in IMG/M
3300005367|Ga0070667_100747224Not Available906Open in IMG/M
3300005440|Ga0070705_100253571Not Available1236Open in IMG/M
3300005455|Ga0070663_101141197Not Available683Open in IMG/M
3300005468|Ga0070707_101679259Not Available602Open in IMG/M
3300005545|Ga0070695_100683483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria813Open in IMG/M
3300005564|Ga0070664_101707722Not Available597Open in IMG/M
3300005719|Ga0068861_100147590All Organisms → cellular organisms → Bacteria1926Open in IMG/M
3300005844|Ga0068862_102194694Not Available563Open in IMG/M
3300005937|Ga0081455_10000585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales47472Open in IMG/M
3300006042|Ga0075368_10293860Not Available700Open in IMG/M
3300006042|Ga0075368_10396803Not Available605Open in IMG/M
3300006048|Ga0075363_100720618Not Available603Open in IMG/M
3300006048|Ga0075363_100829431Not Available563Open in IMG/M
3300006178|Ga0075367_10024043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3434Open in IMG/M
3300006353|Ga0075370_10430001Not Available793Open in IMG/M
3300006353|Ga0075370_10939620Not Available529Open in IMG/M
3300006847|Ga0075431_101984423Not Available537Open in IMG/M
3300006931|Ga0097620_102970182Not Available518Open in IMG/M
3300006954|Ga0079219_12359557All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria515Open in IMG/M
3300009094|Ga0111539_10286379Not Available1917Open in IMG/M
3300009147|Ga0114129_12013666All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
3300009148|Ga0105243_10006116All Organisms → cellular organisms → Bacteria → Proteobacteria9306Open in IMG/M
3300009156|Ga0111538_12508906Not Available647Open in IMG/M
3300010359|Ga0126376_10644942All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1009Open in IMG/M
3300010362|Ga0126377_10769627All Organisms → cellular organisms → Bacteria → Proteobacteria1020Open in IMG/M
3300010371|Ga0134125_10602901Not Available1214Open in IMG/M
3300010373|Ga0134128_10573959Not Available1256Open in IMG/M
3300010399|Ga0134127_13373800Not Available523Open in IMG/M
3300012892|Ga0157294_10000111All Organisms → cellular organisms → Bacteria7431Open in IMG/M
3300012896|Ga0157303_10246494Not Available542Open in IMG/M
3300012899|Ga0157299_10109576Not Available727Open in IMG/M
3300012900|Ga0157292_10162153All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300012907|Ga0157283_10342293All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria535Open in IMG/M
3300012909|Ga0157290_10251314All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300012912|Ga0157306_10004307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2588Open in IMG/M
3300012913|Ga0157298_10118305All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300012987|Ga0164307_11363504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria595Open in IMG/M
3300012989|Ga0164305_10789268Not Available786Open in IMG/M
3300013102|Ga0157371_11624648Not Available506Open in IMG/M
3300013297|Ga0157378_11650590Not Available687Open in IMG/M
3300014299|Ga0075303_1003703Not Available1733Open in IMG/M
3300015201|Ga0173478_10102826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1057Open in IMG/M
3300015371|Ga0132258_10656002Not Available2639Open in IMG/M
3300015371|Ga0132258_10797687Not Available2381Open in IMG/M
3300015371|Ga0132258_10803529All Organisms → cellular organisms → Bacteria → Proteobacteria2371Open in IMG/M
3300015371|Ga0132258_12566747All Organisms → cellular organisms → Bacteria1273Open in IMG/M
3300015371|Ga0132258_13006587All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1168Open in IMG/M
3300015372|Ga0132256_100006759All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria9880Open in IMG/M
3300015372|Ga0132256_100028451All Organisms → cellular organisms → Bacteria → Proteobacteria5032Open in IMG/M
3300015372|Ga0132256_102752437Not Available591Open in IMG/M
3300015373|Ga0132257_100235863All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2180Open in IMG/M
3300015374|Ga0132255_102265695Not Available829Open in IMG/M
3300015374|Ga0132255_103160036Not Available702Open in IMG/M
3300015374|Ga0132255_106086652All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300019356|Ga0173481_10003010All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4325Open in IMG/M
3300019356|Ga0173481_10463770Not Available636Open in IMG/M
3300019356|Ga0173481_10552419Not Available597Open in IMG/M
3300021560|Ga0126371_10571732Not Available1279Open in IMG/M
3300022880|Ga0247792_1010543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1415Open in IMG/M
3300023168|Ga0247748_1033166All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae752Open in IMG/M
3300025900|Ga0207710_10441583Not Available671Open in IMG/M
3300025903|Ga0207680_10019894All Organisms → cellular organisms → Bacteria3601Open in IMG/M
3300025917|Ga0207660_10231136All Organisms → cellular organisms → Bacteria → Proteobacteria1454Open in IMG/M
3300025930|Ga0207701_10082067All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2913Open in IMG/M
3300025930|Ga0207701_10408251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1169Open in IMG/M
3300025930|Ga0207701_10685902All Organisms → cellular organisms → Bacteria868Open in IMG/M
3300025931|Ga0207644_10818056Not Available779Open in IMG/M
3300025932|Ga0207690_10454834All Organisms → cellular organisms → Bacteria → Proteobacteria1030Open in IMG/M
3300025945|Ga0207679_10736351Not Available896Open in IMG/M
3300025953|Ga0210068_1010423Not Available1248Open in IMG/M
3300025957|Ga0210089_1029828All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300025961|Ga0207712_10233778Not Available1477Open in IMG/M
3300025961|Ga0207712_10736441Not Available863Open in IMG/M
3300026088|Ga0207641_10244706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1673Open in IMG/M
3300026118|Ga0207675_100175343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2051Open in IMG/M
3300026118|Ga0207675_100479874All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1235Open in IMG/M
3300026452|Ga0256821_1019120Not Available717Open in IMG/M
3300026758|Ga0207559_103696All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300026784|Ga0207453_101292Not Available706Open in IMG/M
3300026853|Ga0207443_1005677Not Available659Open in IMG/M
3300027036|Ga0207467_1000486All Organisms → cellular organisms → Bacteria2354Open in IMG/M
3300027116|Ga0207539_100519Not Available926Open in IMG/M
3300027252|Ga0209973_1016207All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis948Open in IMG/M
3300027523|Ga0208890_1025497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia871Open in IMG/M
3300027695|Ga0209966_1000908All Organisms → cellular organisms → Bacteria5638Open in IMG/M
3300027717|Ga0209998_10000966All Organisms → cellular organisms → Bacteria → Proteobacteria7289Open in IMG/M
3300027866|Ga0209813_10322588Not Available605Open in IMG/M
3300027876|Ga0209974_10243164Not Available675Open in IMG/M
3300027993|Ga0247749_1008417Not Available981Open in IMG/M
3300028380|Ga0268265_11024495Not Available816Open in IMG/M
(restricted) 3300031150|Ga0255311_1031758Not Available1101Open in IMG/M
(restricted) 3300031150|Ga0255311_1143618All Organisms → cellular organisms → Bacteria → Proteobacteria528Open in IMG/M
(restricted) 3300031197|Ga0255310_10049042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1103Open in IMG/M
(restricted) 3300031248|Ga0255312_1165025Not Available554Open in IMG/M
3300031716|Ga0310813_10007045All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7072Open in IMG/M
3300031716|Ga0310813_10676014Not Available920Open in IMG/M
3300031720|Ga0307469_11420209Not Available662Open in IMG/M
3300031858|Ga0310892_11200928Not Available540Open in IMG/M
3300031908|Ga0310900_10011411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4383Open in IMG/M
3300031908|Ga0310900_10987376Not Available691Open in IMG/M
3300031943|Ga0310885_10012605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2960Open in IMG/M
3300032174|Ga0307470_11440868Not Available570Open in IMG/M
3300032179|Ga0310889_10010567All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2964Open in IMG/M
3300032421|Ga0310812_10010320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3093Open in IMG/M
3300033004|Ga0335084_11075167Not Available808Open in IMG/M
3300034820|Ga0373959_0187812Not Available540Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil13.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.14%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere7.14%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere5.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere5.00%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands4.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.57%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.57%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil2.86%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.86%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.14%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere2.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.14%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.14%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.14%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.14%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere2.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.43%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.43%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.71%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.71%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.71%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.71%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.71%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.71%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.71%
Sugar Cane Bagasse Incubating BioreactorEngineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor0.71%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886013Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000041Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphereHost-AssociatedOpen in IMG/M
3300000156Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobicEngineeredOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300002820Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12EnvironmentalOpen in IMG/M
3300003995Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005104Soil and rhizosphere microbial communities from Laval, Canada - mgHACEnvironmentalOpen in IMG/M
3300005183Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006178Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2Host-AssociatedOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014299Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300023168Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025953Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025957Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026758Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026784Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01.2K2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026853Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027036Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027116Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027252Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027523Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027866Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027993Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SwBSRL2_0287.000079702162886013Switchgrass RhizosphereVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
ICCgaii200_088437622228664021SoilMNGTLDREEEILSWDVSDEALEIAGAAGQVVAGAYTLQFCTSVDCALVS
ARcpr5oldR_00042123300000041Arabidopsis RhizosphereMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
NODE_045679123300000156Sugar Cane Bagasse Incubating BioreactorMDAIIALEEADILSWDVSDESLESAGAGQGVAGAYTLQFCTSQDCALVS*
INPhiseqgaiiFebDRAFT_10154575513300000364SoilMSVVIEEAEEILNWDVSDEALEIAGAAGQEMAGAYTLQFCTTSRDCAS*
JGI11643J12802_1067131523300000890SoilDVSDEALEIAGAAGQVVAGAYTLQFCTSVDCALVS*
JGI10214J12806_1099957313300000891SoilMNVTIGIEESGEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS*
JGI11615J12901_1192994133300000953SoilMSVTIGVEEVEEILNWNVSDEALEIAGAPGQEIAGGYTLQFCTSMDCALVS*
JGI25490J38602_1020033300002820SoilMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCA
Ga0055438_1001114323300003995Natural And Restored WetlandsMNMTIGLEEAEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS*
Ga0055436_1011285913300004024Natural And Restored WetlandsSWRRTQRGNTVMNMTIGLEEAEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS*
Ga0055498_1001270823300004058Natural And Restored WetlandsMNVTIGLEEVEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS*
Ga0062593_10011498933300004114SoilMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTS
Ga0062593_10160144113300004114SoilMNVTIGLEESEEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS*
Ga0062589_10007532443300004156SoilMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCALVS*
Ga0062589_10044829933300004156SoilLLAQEAKGDNVMNVTIGLEESEEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS*
Ga0062589_10074536033300004156SoilITRASQEAEGGNVMGMTLDLEAAEDILTWDVSDEALEIAGAAGPEIAGGYTLQFCTSMDCALVS*
Ga0062589_10153317313300004156SoilMPAHSWMEAKGSIAMNLTSGLEEQILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0063356_10018525843300004463Arabidopsis Thaliana RhizosphereMNATIRREDAEEILSRDVSDEALEMAGAGHEIAGGYTLQFCTSQDCALLS*
Ga0063356_10139192523300004463Arabidopsis Thaliana RhizosphereMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCALV
Ga0063356_10273873223300004463Arabidopsis Thaliana RhizosphereMGMTLDLEAAEDILTWDVSDEALEIAGAAGPEIAGGYTLQFCTSMDCALVS*
Ga0062595_10002734833300004479SoilMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS*
Ga0062595_10017373613300004479SoilMDAIIALEEAEILSWDVSDESLESAGAGQGVAGAYTLQFCTSQDCALVS*
Ga0062595_10125482513300004479SoilLAQDAKGDTVMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCALVS*
Ga0062594_10000894013300005093SoilMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCA
Ga0062594_10008296253300005093SoilEESEEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS*
Ga0062594_10116637023300005093SoilMNVTIGLEDVEEILSWDVSDEALEIAGAGDEIAGAYTLQFCTSQDCALVS*
Ga0062594_10292049223300005093SoilMNVTIDPQETEEILSWDVSDETLESAGAAGQEIAGGYTLQFCTSTDCALVS*
Ga0066818_102404513300005104SoilLAQDAKGNTIMNVTIGLDEAEEILSWDVSDEALEIAGAPGHEIAGGYTLQFCTSMDCALVS*
Ga0068993_1012521623300005183Natural And Restored WetlandsTQRGNTVMNMTIGLEEAEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS*
Ga0066388_10107458823300005332Tropical Forest SoilMSAVIEEAEEILSWDVSDEALEIAGAAGPEMAGAYTLQFCTTTRDCAS*
Ga0070680_10010413123300005336Corn RhizosphereMNVTIGIEESEEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS*
Ga0070680_10081462033300005336Corn RhizosphereMNVTVGFEDAEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0070659_10110826013300005366Corn RhizosphereMDAIIALEEAEILSWDVSDESLESAGAGQGVAGAYTLQFCTSQDCAL
Ga0070667_10074722413300005367Switchgrass RhizosphereMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQF
Ga0070705_10025357133300005440Corn, Switchgrass And Miscanthus RhizosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0070663_10114119723300005455Corn RhizosphereMDAIIALEEAEILSWDVSDESLESAGAGQGVAGAYTLQFCTSQ
Ga0070707_10167925913300005468Corn, Switchgrass And Miscanthus RhizosphereKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0070695_10068348313300005545Corn, Switchgrass And Miscanthus RhizosphereMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0070664_10170772223300005564Corn RhizosphereMDAIIALEEAEILSWDVSDESLESAGAGQGVAGAYTLQFC
Ga0068861_10014759013300005719Switchgrass RhizosphereLSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0068862_10219469423300005844Switchgrass RhizosphereGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0081455_10000585173300005937Tabebuia Heterophylla RhizosphereMGVVIEEAEEILSWDVSDEALEIAGAAGQEMAGAYTLQFCTTSRDCAS*
Ga0075368_1029386023300006042Populus EndosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGVYTLQFCTSTDCALVS*
Ga0075368_1039680323300006042Populus EndosphereTEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS*
Ga0075363_10072061823300006048Populus EndosphereWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS*
Ga0075363_10082943113300006048Populus EndosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALERAAGLEIAGAYTLQFC
Ga0075367_1002404313300006178Populus EndosphereMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMD
Ga0075370_1043000123300006353Populus EndosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALERAAGLEIAGAYTLQFCTSTDCALVS*
Ga0075370_1093962013300006353Populus EndosphereARETKGNTIMNVTIGLEDAEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0075431_10198442323300006847Populus RhizosphereMNVTIGLEESEEILSWDVSDEALEIAGAAGQVVAGAYTLQFCTSVDCALVS*
Ga0097620_10297018223300006931Switchgrass RhizosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDC
Ga0079219_1235955723300006954Agricultural SoilVSTTVDLEEEKEILNRDVPDDALEIAGAAGQEVAGGYTLQFCTSMDCALIS*
Ga0111539_1028637923300009094Populus RhizosphereMSVTIGLEDVEEILNWNVSDEALEIAGAPGQEIAGGYTLQFCTSMDCALVS*
Ga0114129_1201366613300009147Populus RhizosphereMNVTIGLEEMEEILSWDVSDEALEIAGTAGQVVAGAYTLQFCTSVDCALVS*
Ga0105243_1000611683300009148Miscanthus RhizosphereMNVTIGFQETEEILSWDVSDEALEIAGAAGQEIAGAYTLQFCTSMDCALAS*
Ga0111538_1250890613300009156Populus RhizosphereMSVTIGVEEVEEILNWNVSDEALEIAGTPGQEITAGYTLQFCTSMDCALVS*
Ga0126376_1064494213300010359Tropical Forest SoilMSVVIEEAEAILSWDVSDEALEVAGAAGQEMAGAYTMQFCTTTRDCAG*
Ga0126377_1076962723300010362Tropical Forest SoilMSVVIEEAEAILSWDVSDEALEIAGAAGQEMAGAYTLQFCTTSRDCAG*
Ga0134125_1060290143300010371Terrestrial SoilEILSWDVSDESLESAGAGQGVAGAYTLQFCTSQDCALVS*
Ga0134128_1057395923300010373Terrestrial SoilMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0134127_1337380023300010399Terrestrial SoilEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCALVS*
Ga0157294_1000011173300012892SoilMNVIIGLQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS*
Ga0157303_1024649413300012896SoilGNTAMNVTSSPEDEILHCDVSDEALEIAAGQEIAGAYTLQFCTSTDCALVS*
Ga0157299_1010957623300012899SoilMEAKGSIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0157292_1016215323300012900SoilVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0157283_1034229323300012907SoilFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0157290_1025131413300012909SoilETEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0157306_1000430753300012912SoilQDARGKNVMNVTVGFEDAEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0157298_1011830513300012913SoilQDAKGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0164307_1136350423300012987SoilDARGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0164305_1078926813300012989SoilEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0157371_1162464813300013102Corn RhizosphereLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0157378_1165059023300013297Miscanthus RhizosphereEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0075303_100370333300014299Natural And Restored WetlandsRTQRGNTVMNMTIGLEEAEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS*
Ga0173478_1010282633300015201SoilRGKNVMNVTVGFEDAEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0132258_1065600243300015371Arabidopsis RhizosphereLAQETKGNNVMNVTIGLRETEEILSWDVSDEALEIAGAAGQELAAAYTLQFCTSTDCALVS*
Ga0132258_1079768733300015371Arabidopsis RhizosphereLRGWCGKLKGNTVMNVTIDREEADEVLSRDVSDEALEIAGSAEIAGGYTLQFCTSMECALVS*
Ga0132258_1080352923300015371Arabidopsis RhizosphereVQETKGNTVMNATIRFEDADEILSRDVSDEALEIAGSAEIAGGYTLQFCTSMDCALVS*
Ga0132258_1256674733300015371Arabidopsis RhizosphereMTTSFDLEEEVLNRDVSDEALESAAGLEIAGAYTLQFCTSTDCALVS*
Ga0132258_1300658723300015371Arabidopsis RhizosphereMNATIGLEDAEEILSWDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALVS*
Ga0132256_10000675913300015372Arabidopsis RhizosphereEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0132256_10002845163300015372Arabidopsis RhizosphereLRGWCGKLKGNTVMNVTIDREEADEVLSRDVSDEALEIAGSAEIAGGYTLQFCTSMDCALVS*
Ga0132256_10275243723300015372Arabidopsis RhizosphereAEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS*
Ga0132257_10023586383300015373Arabidopsis RhizosphereLRGWCGKLKGNTVMNVTIDREEADEVLSRDVSDEALEIAGSAEIAGGYTLQFCTS
Ga0132255_10226569513300015374Arabidopsis RhizosphereMTTSFDLGEEVLNWDDSDEARESAAGLEIAGACTLQFCTSTDCALVS*
Ga0132255_10316003613300015374Arabidopsis RhizosphereMNVTVGFEDAEDILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCAL
Ga0132255_10608665213300015374Arabidopsis RhizosphereMNVTVGLEDVEEILSWDISDAALEIAGAGHEMAGAYTLQFCTSQDCALAS*
Ga0173481_1000301083300019356SoilMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0173481_1046377033300019356SoilMNVIIGLQETEEILSWDVSDEALEIAGAAGQEIAGAYTLQFCTSMDCALATQSAAMVLILDR
Ga0173481_1055241913300019356SoilMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0126371_1057173223300021560Tropical Forest SoilMDAINALEKAEILSWDVSDESLESAGAGQGVAGAYTLQFCTSQDCALVS
Ga0247792_101054333300022880SoilMNVTVGFEDAEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0247748_103316613300023168SoilDARGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207710_1044158323300025900Switchgrass RhizosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALV
Ga0207680_1001989413300025903Switchgrass RhizosphereMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLKFCT
Ga0207660_1023113623300025917Corn RhizosphereMNVTIGIEESEEILSWDVSDDALEIAGAAGQVIAGGYTLQFCTSVDCALVS
Ga0207701_1008206713300025930Corn, Switchgrass And Miscanthus RhizosphereFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207701_1040825133300025930Corn, Switchgrass And Miscanthus RhizosphereGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207701_1068590223300025930Corn, Switchgrass And Miscanthus RhizosphereMNVTIGLEDAEEILSWDVSDAALEIAGAAGPEMAGGYTLQFCTSQDCALVS
Ga0207644_1081805623300025931Switchgrass RhizosphereMPAQSWMEAKGNIAMNPTSGLEEEILYWDVSDEALESAAGLEIAGAYTLQFCTSTDCALV
Ga0207690_1045483413300025932Corn RhizosphereMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQD
Ga0207679_1073635123300025945Corn RhizosphereMPAQSWMEAKGNIAMNLTSGLEEEILYWDVSDEALESAAGLEIAGVYTLQFCTSTDCALV
Ga0210068_101042313300025953Natural And Restored WetlandsMNMTIGLEEAEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS
Ga0210089_102982813300025957Natural And Restored WetlandsMNVTIGLEEVEEILSRDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALAS
Ga0207712_1023377833300025961Switchgrass RhizosphereQDARGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207712_1073644113300025961Switchgrass RhizosphereMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQ
Ga0207641_1024470613300026088Switchgrass RhizosphereAKGNIAMNLTSGLEEEILYWDVSDEALASAAGLEIAGAYTLQFCTSTDCALVS
Ga0207675_10017534313300026118Switchgrass RhizosphereGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207675_10047987413300026118Switchgrass RhizosphereMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCT
Ga0256821_101912023300026452SedimentMNVTIGLEEAEEILSRDVSDEALEIAGEGHEIAGGYTLQFCTSRDCALAS
Ga0207559_10369623300026758SoilMNVTIGFQETEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207453_10129223300026784SoilMNVTIGFQETEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207443_100567733300026853SoilMNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCT
Ga0207467_100048623300027036SoilMNVTIGFQETEEILSWDVSDEALEIAGAAGQEIAGAYTLQFCTSMDCALATQSAAMVLILDR
Ga0207539_10051923300027116SoilAGNKRQLSAIDLEETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0209973_101620723300027252Arabidopsis Thaliana RhizosphereMNVTIGLEDVEEILSWDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALVS
Ga0208890_102549723300027523SoilMNVTIGLEEAEEILSWDVSDEALEIAGTAGHVIAGGYTLQFCTSMDCALVS
Ga0209966_100090823300027695Arabidopsis Thaliana RhizosphereMNVTIGLEEMEEILSWDVSDEALEIAGAAGQVVAGAYTLQFCTSVDCALVS
Ga0209998_10000966113300027717Arabidopsis Thaliana RhizosphereMNVTIGFQETEEILSWDVSDEALEIAGAAGQVVAGAYTLQFCTSVDCALVS
Ga0209813_1032258823300027866Populus EndosphereTEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0209974_1024316423300027876Arabidopsis Thaliana RhizosphereVMNVTIGLEDVEEILSWDVSDEALEIAGAGDEIAGAYTLQFCTSQDCALVS
Ga0247749_100841713300027993SoilILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCALAS
Ga0268265_1102449513300028380Switchgrass RhizosphereEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
(restricted) Ga0255311_103175823300031150Sandy SoilMNVTIGLEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
(restricted) Ga0255311_114361813300031150Sandy SoilMNVTFGLEESEEILSWDVSDEALEIAGTAWQVIAGGYTLQFCTSTDCALVS
(restricted) Ga0255310_1004904213300031197Sandy SoilMNVTVGFEDAEEILSWDVSDEALENAGTAGQETAGAYTLQFCTSQDCALVS
(restricted) Ga0255312_116502513300031248Sandy SoilMNVTVGFEDAAEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0310813_1000704543300031716SoilMNATIRREDAEEILSRDVSDEALEMAGAGHEIAGGYTLQFCTSQDCALVS
Ga0310813_1067601413300031716SoilDCAAQRGNKTMDAIIALEEAEILSWNVSDESLESAGAGQGVAGAYTLQFCTSQDCALVS
Ga0307469_1142020923300031720Hardwood Forest SoilMSVVIEEAEEILSWDVSDEALEIAGAAGQEMAGAYTMQFCTTSRDCAS
Ga0310892_1120092833300031858SoilWDVSDEALEIAGTAGHVIAGGYTLQFCTSMDCALVS
Ga0310900_1001141143300031908SoilMSAFGGRADLITCAVAQDARGKNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0310900_1098737613300031908SoilMGNTVMNVSIGLEDAEEILNWDVSDEAFEIAGAAGQELAGAYTLQFCTSQDCALVS
Ga0310885_1001260543300031943SoilWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0307470_1144086813300032174Hardwood Forest SoilMNVTIGLEETEAILSWDISDEALEIAGTAGQVIAGGYTLQFCTSMDCALVS
Ga0310889_1001056743300032179SoilNVMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0310812_1001032033300032421SoilILSRDVSDEALEMAGAGHEIAGGYTLQFCTSQDCALVS
Ga0335084_1107516733300033004SoilDAEEILSWDVSDEALEIAGAGHEIAGGYTLQFCTSQDCALVS
Ga0373959_0187812_3_1463300034820Rhizosphere SoilMNVTVGFEDAEEILSWDVSDEALESAGTAGQEIAGAYTLQFCTSQDCA


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