Metagenome / Metatranscriptome Family F054502

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054502
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	45 residues
Representative Sequence	MTETIIMRGAYAITDPRLGASGVIPAGAVVIVDGTIRETGPFAA
Number of Associated Samples	105
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.12 %
% of genes near scaffold ends (potentially truncated)	98.56 %
% of genes from short scaffolds (< 2000 bps)	86.33 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.101 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.324 % of family members)
Environment Ontology (ENVO)	Unclassified (64.029 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.324 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 11.11% Coil/Unstructured: 88.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF01243	Putative_PNPOx	10.79
PF03641	Lysine_decarbox	10.07
PF00175	NAD_binding_1	4.32
PF05721	PhyH	2.88
PF00805	Pentapeptide	2.16
PF00296	Bac_luciferase	2.16
PF05494	MlaC	2.16
PF02371	Transposase_20	1.44
PF02798	GST_N	1.44
PF04909	Amidohydro_2	1.44
PF02452	PemK_toxin	1.44
PF00106	adh_short	0.72
PF11066	DUF2867	0.72
PF02627	CMD	0.72
PF14294	DUF4372	0.72
PF05443	ROS_MUCR	0.72
PF00903	Glyoxalase	0.72
PF07992	Pyr_redox_2	0.72
PF12146	Hydrolase_4	0.72
PF00005	ABC_tran	0.72
PF07995	GSDH	0.72
PF02735	Ku	0.72
PF12697	Abhydrolase_6	0.72
PF01568	Molydop_binding	0.72
PF15902	Sortilin-Vps10	0.72
PF02515	CoA_transf_3	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	10.07
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.88
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	2.16
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.16
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	2.16
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	1.44
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.44
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.72
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.72
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.72
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.72
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.72
COG4957	Predicted transcriptional regulator	Transcription [K]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.10 %
Unclassified	root	N/A	25.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.10 %
Unclassified	root	N/A	25.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.10 %
Unclassified	root	N/A	25.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.32 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.32 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.16 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.32 %
Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	2.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.32 %
Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	2.16 %
Bradyrhizobium ivorense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium ivorense	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_105633125	Not Available	634	Open in IMG/M
3300005435\|Ga0070714_100861898	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005536\|Ga0070697_100386484	Not Available	1213	Open in IMG/M
3300005556\|Ga0066707_10959999	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005602\|Ga0070762_10984864	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300009792\|Ga0126374_10557741	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300009826\|Ga0123355_11107583	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300009826\|Ga0123355_11439816	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300010046\|Ga0126384_10028682	All Organisms → cellular organisms → Bacteria → Proteobacteria	3675	Open in IMG/M
3300010162\|Ga0131853_10656890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	883	Open in IMG/M
3300010361\|Ga0126378_10201136	All Organisms → cellular organisms → Bacteria → Proteobacteria	2069	Open in IMG/M
3300010361\|Ga0126378_10208702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2033	Open in IMG/M
3300010361\|Ga0126378_12970451	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300010366\|Ga0126379_10847954	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300010366\|Ga0126379_13103420	Not Available	556	Open in IMG/M
3300010369\|Ga0136643_10657216	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010376\|Ga0126381_101207287	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300010376\|Ga0126381_103788558	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300010396\|Ga0134126_11212855	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300011269\|Ga0137392_10079731	All Organisms → cellular organisms → Bacteria	2539	Open in IMG/M
3300011271\|Ga0137393_10508744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300012096\|Ga0137389_10898605	Not Available	760	Open in IMG/M
3300012202\|Ga0137363_11324969	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300012923\|Ga0137359_10114770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium ivorense	2387	Open in IMG/M
3300012927\|Ga0137416_11382786	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300016270\|Ga0182036_10034036	All Organisms → cellular organisms → Bacteria → Proteobacteria	3065	Open in IMG/M
3300016319\|Ga0182033_11709992	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300016341\|Ga0182035_11030718	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300016341\|Ga0182035_11440821	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300016341\|Ga0182035_12090757	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300016357\|Ga0182032_10174543	Not Available	1613	Open in IMG/M
3300016357\|Ga0182032_10195580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1535	Open in IMG/M
3300016357\|Ga0182032_10244338	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300016357\|Ga0182032_11778319	Not Available	538	Open in IMG/M
3300016371\|Ga0182034_10365419	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300016387\|Ga0182040_10750020	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300016404\|Ga0182037_10562014	Not Available	964	Open in IMG/M
3300016404\|Ga0182037_10746748	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300016445\|Ga0182038_11303740	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300017823\|Ga0187818_10083090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1382	Open in IMG/M
3300018433\|Ga0066667_10288591	Not Available	1268	Open in IMG/M
3300020579\|Ga0210407_10251297	Not Available	1377	Open in IMG/M
3300020581\|Ga0210399_10081161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2635	Open in IMG/M
3300020581\|Ga0210399_11250209	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300021432\|Ga0210384_10429286	Not Available	1190	Open in IMG/M
3300021476\|Ga0187846_10275602	Not Available	697	Open in IMG/M
3300021476\|Ga0187846_10372995	Not Available	588	Open in IMG/M
3300025915\|Ga0207693_11454887	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300026489\|Ga0257160_1055418	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300026551\|Ga0209648_10616624	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300026984\|Ga0208732_1004833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1039	Open in IMG/M
3300027610\|Ga0209528_1098848	Not Available	645	Open in IMG/M
3300027651\|Ga0209217_1070067	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300027767\|Ga0209655_10063120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1234	Open in IMG/M
3300027846\|Ga0209180_10173967	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300027874\|Ga0209465_10080157	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300027903\|Ga0209488_10774367	Not Available	682	Open in IMG/M
3300029636\|Ga0222749_10548583	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300031421\|Ga0308194_10141982	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031543\|Ga0318516_10656497	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300031545\|Ga0318541_10624979	Not Available	602	Open in IMG/M
3300031546\|Ga0318538_10483396	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300031561\|Ga0318528_10807244	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031564\|Ga0318573_10020229	All Organisms → cellular organisms → Bacteria → Proteobacteria	2989	Open in IMG/M
3300031564\|Ga0318573_10725326	Not Available	534	Open in IMG/M
3300031572\|Ga0318515_10656003	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031573\|Ga0310915_10949858	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031668\|Ga0318542_10525285	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031679\|Ga0318561_10818163	Not Available	512	Open in IMG/M
3300031681\|Ga0318572_10193337	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300031718\|Ga0307474_10080035	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300031719\|Ga0306917_10017994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4287	Open in IMG/M
3300031719\|Ga0306917_11370252	Not Available	546	Open in IMG/M
3300031724\|Ga0318500_10262209	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300031736\|Ga0318501_10390893	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300031736\|Ga0318501_10764237	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031744\|Ga0306918_10176631	All Organisms → cellular organisms → Bacteria → Proteobacteria	1596	Open in IMG/M
3300031747\|Ga0318502_10139828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1374	Open in IMG/M
3300031748\|Ga0318492_10603981	Not Available	585	Open in IMG/M
3300031751\|Ga0318494_10669902	Not Available	607	Open in IMG/M
3300031751\|Ga0318494_10775591	Not Available	562	Open in IMG/M
3300031753\|Ga0307477_10423315	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300031764\|Ga0318535_10254220	Not Available	786	Open in IMG/M
3300031768\|Ga0318509_10121501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1425	Open in IMG/M
3300031779\|Ga0318566_10539650	Not Available	570	Open in IMG/M
3300031781\|Ga0318547_10052534	All Organisms → cellular organisms → Bacteria → Proteobacteria	2198	Open in IMG/M
3300031794\|Ga0318503_10050103	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300031798\|Ga0318523_10374486	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300031831\|Ga0318564_10474110	Not Available	544	Open in IMG/M
3300031833\|Ga0310917_11119692	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031845\|Ga0318511_10181585	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300031846\|Ga0318512_10174525	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300031846\|Ga0318512_10247423	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031880\|Ga0318544_10021322	All Organisms → cellular organisms → Bacteria → Proteobacteria	2177	Open in IMG/M
3300031890\|Ga0306925_10129086	All Organisms → cellular organisms → Bacteria	2710	Open in IMG/M
3300031890\|Ga0306925_10768613	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300031890\|Ga0306925_10921205	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031890\|Ga0306925_11391111	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300031894\|Ga0318522_10237150	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300031896\|Ga0318551_10427805	Not Available	755	Open in IMG/M
3300031910\|Ga0306923_11421764	Not Available	729	Open in IMG/M
3300031912\|Ga0306921_10998401	All Organisms → cellular organisms → Bacteria → Proteobacteria	944	Open in IMG/M
3300031912\|Ga0306921_12303236	Not Available	565	Open in IMG/M
3300031912\|Ga0306921_12325214	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031941\|Ga0310912_10004612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8204	Open in IMG/M
3300031941\|Ga0310912_10318372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	1205	Open in IMG/M
3300031942\|Ga0310916_10241528	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300031942\|Ga0310916_10297786	All Organisms → cellular organisms → Bacteria → Proteobacteria	1365	Open in IMG/M
3300031942\|Ga0310916_10472207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	1068	Open in IMG/M
3300031946\|Ga0310910_10064702	All Organisms → cellular organisms → Bacteria → Proteobacteria	2621	Open in IMG/M
3300031946\|Ga0310910_10808119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	738	Open in IMG/M
3300031954\|Ga0306926_12238297	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031959\|Ga0318530_10504066	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031962\|Ga0307479_10856645	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300031981\|Ga0318531_10013591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3117	Open in IMG/M
3300031981\|Ga0318531_10194804	Not Available	913	Open in IMG/M
3300032001\|Ga0306922_11473801	Not Available	681	Open in IMG/M
3300032001\|Ga0306922_11619236	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300032010\|Ga0318569_10446833	Not Available	603	Open in IMG/M
3300032035\|Ga0310911_10005396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5526	Open in IMG/M
3300032035\|Ga0310911_10733079	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300032041\|Ga0318549_10184477	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300032042\|Ga0318545_10137154	Not Available	867	Open in IMG/M
3300032044\|Ga0318558_10603669	Not Available	548	Open in IMG/M
3300032051\|Ga0318532_10026245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1916	Open in IMG/M
3300032055\|Ga0318575_10009804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3651	Open in IMG/M
3300032059\|Ga0318533_10444660	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300032059\|Ga0318533_10883263	Not Available	656	Open in IMG/M
3300032068\|Ga0318553_10388226	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300032068\|Ga0318553_10615414	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300032076\|Ga0306924_10938284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15	954	Open in IMG/M
3300032091\|Ga0318577_10012559	All Organisms → cellular organisms → Bacteria → Proteobacteria	3373	Open in IMG/M
3300032180\|Ga0307471_101247596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	907	Open in IMG/M
3300032261\|Ga0306920_101041687	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300032261\|Ga0306920_102211364	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300032261\|Ga0306920_102260539	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300032895\|Ga0335074_11540988	Not Available	525	Open in IMG/M
3300033289\|Ga0310914_10740059	Not Available	880	Open in IMG/M
3300033290\|Ga0318519_10388726	Not Available	829	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	2.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.68%
Arthropoda	Host-Associated → Arthropoda	2.88%
Aquatic	Environmental → Aquatic	1.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.24%
Digestive System	Host-Associated → Arthropoda → Digestive System	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.44%
Cave	Environmental → Terrestrial → Cave	1.44%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.05%
Loam	Environmental → Terrestrial → Soil → Loam	6.47%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	2.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.44%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	71.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.32%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.16%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.44%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.16%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.44%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.44%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.44%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010369	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1056331252	3300005332	Tropical Forest Soil	MAETIILRGAHLITDPRLGPAGVIPEGAVAITGGIVAETGPFATIASKYPGARAL
Ga0070714_1008618982	3300005435	Agricultural Soil	VPKIAKGPKVMTDTIIMRGAYAITDPRLGASGVIPAGAVVIMDGIIRET
Ga0070697_1003864841	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTETIIMRGAYAITDPRLGASGVIPDGAVVIVDGTIRETGPFAAIAPK
Ga0066707_109599991	3300005556	Soil	MAETIIMRGAYAITDPRLRAAGVIPAGAVAITDGIVVETGSFA
Ga0070762_109848643	3300005602	Soil	MTETIIMRGAHVITDPRLGASGVIQAGAVVIADGTIRETGPFAARLAGEK
Ga0126374_105577412	3300009792	Tropical Forest Soil	MADTIIMRGAYTITDPRLGAPGIIPAGAVVIIDGTVKET
Ga0123355_111075832	3300009826	Termite Gut	MARTIILRGAFAITDPRLGPTGVIRDGAVAITGDTVAETGPFTAVVSKYP
Ga0123355_114398162	3300009826	Termite Gut	MAKTIILRGAFAITDPRLGPTGVIRDGAVAITGDTVAETGPFTAVVSKYP
Ga0126384_100286821	3300010046	Tropical Forest Soil	MAETTIMRGAYAITDPRLGAAGVILGGAVAITGHTVAETGPFTAI
Ga0131853_106568901	3300010162	Termite Gut	MTETILMRGAYAITDPRLGPSGAIPAGAVVITDGIVSETGRFGAIAPKYPDAYVIGDG
Ga0126378_102011364	3300010361	Tropical Forest Soil	MAETTIMRGAYAITDPRLGAAGVIPGGAVAITGHTVAETGPFTAIVQKYP
Ga0126378_102087024	3300010361	Tropical Forest Soil	MAETIIMRGAHAITDPRLGPAGVIHGGAVAIAAGMVVK
Ga0126378_129704511	3300010361	Tropical Forest Soil	MTDTIIMRGAYAITDPRLGASGVIPSGAVVIMDGTVKETGPFAA
Ga0126379_108479542	3300010366	Tropical Forest Soil	MTDTLIMRGAYAITDPRLGASGVLPAGAVVIIDGTVKQTGPFAEIASKYPGADIIGD
Ga0126379_131034201	3300010366	Tropical Forest Soil	MSETIIMRGAYVITDPRLGAGGVIPEGAVVITDGMVAETG
Ga0136643_106572161	3300010369	Termite Gut	MAETIIMRGAYAITDPRRREAGVIPQGAVAITDGIVAETGPFAA
Ga0126381_1012072871	3300010376	Tropical Forest Soil	MRDTIIMRSAYAITDPRLGSSGVIPAGAVVIMDGAVK
Ga0126381_1037885581	3300010376	Tropical Forest Soil	MTDTLIMRGAYAITDPRLGASGVLPAGAVVIIDGTVKQTGPFAE
Ga0134126_112128552	3300010396	Terrestrial Soil	MTETIIMRGAYAIADPRLGTSGVIPAGAVVIVDGTIRETGPFAAIAPKYPGTSATALSC*
Ga0137392_100797311	3300011269	Vadose Zone Soil	VTETIIMRGAHAIIDPRLGPRGVIPAGAVAITDGKVAETGL
Ga0137393_105087441	3300011271	Vadose Zone Soil	MTETIIMRGACAITDPRLGASGVIPAGAVVIVDGTIRETGPFAAIAPKYP
Ga0137389_108986052	3300012096	Vadose Zone Soil	MTETIIMRGAHAIIDPRLGPRGVIPAGAVAITDGTV
Ga0137363_113249691	3300012202	Vadose Zone Soil	MTETIIMRGAYAITDPRLGASGVIPAGAVAITEGM
Ga0137359_101147701	3300012923	Vadose Zone Soil	MTETIIMRGAYAITDPRLGASGVIPAGAVVIVDGTIRETGPFAA
Ga0137416_113827861	3300012927	Vadose Zone Soil	MTETIIMRGAYAITDPRLGASGVIPAGAVVIVDGTIRETGPFAAIAPKYP
Ga0182036_100340365	3300016270	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAIADGTITENGP
Ga0182033_117099922	3300016319	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIRETG
Ga0182035_110307181	3300016341	Soil	MAETIIMRGAYAITDPRLREAGVIAGGAVAITGGTVVEAGSFAALAPKHLGAR
Ga0182035_114408211	3300016341	Soil	MADTIIMRGAYTITDPRLGAPGIIPAGAVVIIDGTVKETGLFATIAPKYPYAA
Ga0182035_120907571	3300016341	Soil	MTDTIIMRGAYAITDPRLGRSGVIPSGAVVIMDGT
Ga0182032_101745431	3300016357	Soil	MTDAIIMHGAYAITDPRLGRSGVIPSGAVVIMDGTVKETDPFATIAPKYPG
Ga0182032_101955801	3300016357	Soil	MTDTIIMRGAYAITDPRLGRSGVIPSGAVVIMDGTVKETDPFATIAPKYPG
Ga0182032_102443383	3300016357	Soil	MIETIIMRGAYAITDPRSGRAGAIPGGAVAITGGLVAETGPF
Ga0182032_117783193	3300016357	Soil	MAETIIMRGAYAITDPRLREAGVIPQGAVAISDGIVAET
Ga0182034_103654193	3300016371	Soil	MEETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFAEIAPKYPGARVL
Ga0182040_107500202	3300016387	Soil	MAETIIMRGAYAITDPRLGAAGVIPGGAVAITGHTV
Ga0182037_105620143	3300016404	Soil	MVETIIMRGAYAITDPRMGHAGVIPGGAVAITGGSVAETGPFAVLAPKYPGVPVIGD
Ga0182037_107467482	3300016404	Soil	MAETIIMRGAYAITDPRVREAGVISDGAVAITDGIVV
Ga0182038_113037401	3300016445	Soil	MTDAIIMHGAYAITDPRLGRSGVIPSGAVVIMDGTVKET
Ga0187818_100830903	3300017823	Freshwater Sediment	MAETILMRGAHMIIDSRLGPSGVIAAGAVAITDGTVVETGPFAAIAPKYPGAR
Ga0066667_102885911	3300018433	Grasslands Soil	MTETIIMRGAYAITDPRLGPSGVIPAGAVAITDGTVRENGSFAAIAPKYPGARVLGDG
Ga0210407_102512971	3300020579	Soil	MTETIIMRGAYAITDPRLGASGVIPDGAVVIVDGTIRETG
Ga0210399_100811615	3300020581	Soil	MTDTIIMRGAYAITDPRLGASGVIPAGAVVIMDGIIRETGPFDAIAPKYP
Ga0210399_112502091	3300020581	Soil	MTETIIMRGAYVITDPRLGASGVIQAGAVVIADGTIRET
Ga0210384_104292863	3300021432	Soil	MTDTIIMRGAYAITDPRLGASGVIPAGAVVIMDGIIRE
Ga0187846_102756022	3300021476	Biofilm	MVETIIMRGAYAITDPRLGHAGVIPGGAVAITGGSVSETGPFAVLAP
Ga0187846_103729951	3300021476	Biofilm	MAKTIILRGAHAVIDPRLGPSGVIRDGAVAITDGRV
Ga0207693_114548871	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTETIIMRGAYAITDPRLRASGVIPAGAVVIVDGTI
Ga0257160_10554182	3300026489	Soil	MTETIIMRGAYVITDPRLGASGVIQAGAVVITDGTIRETGPFAAIAPKYPRTGVI
Ga0209648_106166241	3300026551	Grasslands Soil	MTETIIMRGAYVITDPRLGASGVIQAGAVVIADGTIRETGP
Ga0208732_10048331	3300026984	Forest Soil	MTDTIIMRGAHAITDPRLGASGVIPAGAVVIMDGTV
Ga0209528_10988481	3300027610	Forest Soil	MTETIIMRGAYVIIDPRLGASGVIQAGAVVITDGTIRET
Ga0209217_10700671	3300027651	Forest Soil	MTETIIMRGAYAITDPRLGASGVIPDGAVVIVDGTIRETGPFAQSRPNILVPASSATALS
Ga0209655_100631202	3300027767	Bog Forest Soil	MTDSVIMRGAYAITDPRLGASGVISAGAVAIIDGTVKETGPFAAIAPKYPGATIIGD
Ga0209180_101739671	3300027846	Vadose Zone Soil	VTETIIMRGAHAIIDPRLGPRGVLPAGAVAITDGKVAETGPFAT
Ga0209465_100801571	3300027874	Tropical Forest Soil	MAETIVLRGAYAITDPRLGPSGVIPEGAVAITNGIIAETGPFAAMVAKYTGARVLGNGTQLL
Ga0209488_107743671	3300027903	Vadose Zone Soil	MTETIIMRGAYAITDPRLGASGVIPAGAVVIVDGTVRE
Ga0222749_105485831	3300029636	Soil	MAETIIMRGAHAITDPRLGHAGVIPSGAVAITGSTVAEIGPFAAIAPKYP
Ga0308194_101419822	3300031421	Soil	MTETIIMRGAYAITDPRLGPSGVIPAGTVAITDGTVRE
Ga0318516_106564972	3300031543	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIRETGPFAAIASKYPGISV
Ga0318541_106249792	3300031545	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIR
Ga0318538_104833962	3300031546	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFAT
Ga0318528_108072441	3300031561	Soil	MTDAIIMHGAYAITDPRLGRSGVIPSGAVVIMDGTVKETDPFATIAPKYPGA
Ga0318573_100202295	3300031564	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITSGSVVETGPFV
Ga0318573_107253261	3300031564	Soil	MRGAHAITDARLGPSGVIPAGAVVITDGTIAETGPFAAIA
Ga0318515_106560031	3300031572	Soil	MAETIIMRGAYAITNPRLGNAGVIPGGAVAITGGSVVETGPF
Ga0310915_109498582	3300031573	Soil	MRETIIMRGAYVITDPRLGASGVISAGAVVIVDGTIRETGPFAAIAPKYPGISVVGD
Ga0318542_105252851	3300031668	Soil	MTETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFAAIAPKYPGIS
Ga0318561_108181631	3300031679	Soil	MAQTIIMRGAHALTDPRLGRGGIIPRGAVAMAGGVVVETG
Ga0318572_101933373	3300031681	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITGGSV
Ga0307474_100800354	3300031718	Hardwood Forest Soil	MRGAHVITDPRLGASGVIQAGAVVIADGTIRETGPFAAIAPKYPGTG
Ga0306917_100179941	3300031719	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITGGSVVETGPFVAISPKYP
Ga0306917_113702521	3300031719	Soil	MAETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFAEIA
Ga0318500_102622091	3300031724	Soil	MAQTIIMRSAYAITDPRLGRAGLIPGGAVAITDGSVAE
Ga0318501_103908932	3300031736	Soil	MAQTIIMRSAYAITDPRLGRAGLIPGGAVAITDGSVAET
Ga0318501_107642371	3300031736	Soil	MAETIIMRGAHAITDPRLGPAGVIHGGAVAIAAGMVVETGLFDVLAPKYPGARVIGDDT
Ga0306918_101766311	3300031744	Soil	MTDTIVMRGAYAITDPRLGAAGVIPAGAVVIIDGIVKQAGRFAEIAS
Ga0318502_101398283	3300031747	Soil	MTDTIIMRGAYAITDPRLGRSGVIPSGAVVIMDGTVKETDPFATIAPKY
Ga0318492_106039811	3300031748	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITGGSVVETGPF
Ga0318494_106699021	3300031751	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGT
Ga0318494_107755912	3300031751	Soil	MVETIIMRGAYAITDPRMGHAGVIPGGAVAITGGSVAETGPFAVLA
Ga0307477_104233153	3300031753	Hardwood Forest Soil	MTETIIMRGAHVITDPRLGASGVIQAGAVVIADGTIRETGPFAAIAPNGTGVIGD
Ga0318535_102542201	3300031764	Soil	MVETIIMRGAYAITDPRMGHAGVIPGGAVAITGGSVAE
Ga0318509_101215013	3300031768	Soil	MAETIIMRGAHAITDPRLGPAGVIHGGAVAIAAGMVVE
Ga0318566_105396502	3300031779	Soil	MVQAIIMRGAHALTDPRLGRGGIIPRGAVAMAGGVVVET
Ga0318547_100525341	3300031781	Soil	MAQTIIVRGAHAIIDPRLGHAGVIPGGAVVITGGTVV
Ga0318503_100501033	3300031794	Soil	MAQTIIVRGAHAIIDPRLGHAGVIPGGAVVITGGTVVEAGS
Ga0318523_103744861	3300031798	Soil	MAETIIMRGAYAITNPRLGNAGVIPGGAVAITGGSVVETGPFVAISPK
Ga0318564_104741101	3300031831	Soil	MVETIIMRGAYAITDPRMGHAGVIPGGAVAITGGSVAETG
Ga0310917_111196921	3300031833	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGA
Ga0318511_101815852	3300031845	Soil	MAETVIMRGAHAITDARLGPSGVIPAGAVVITDGTIAETGPFAAIAPKYPDA
Ga0318512_101745251	3300031846	Soil	MAQTIIVRGAHAIIDPRLGHAGVIPGGAVVITGGTTRD
Ga0318512_102474231	3300031846	Soil	MTDTIIMHGAYAITDPRLGRSGVIPSGAVVIMDGIVKETGPFAA
Ga0318544_100213224	3300031880	Soil	MAETIIMRGAYAITDPRLREAGVIAGGAVAITGGTVVEAGSFAALAPKHLGARI
Ga0306925_101290864	3300031890	Soil	MTDTIIMHGAYAITDPRLGRSGVIPSGAVVIMDGIVKETGPFAAIAPKYP
Ga0306925_107686132	3300031890	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIRETGPFAAIA
Ga0306925_109212051	3300031890	Soil	MAETIIMRGAYAITDPRLQAAGVIPGGAVAITGHTVAETGPFTAIVQKYPGA
Ga0306925_113911112	3300031890	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFATIAPK
Ga0318522_102371502	3300031894	Soil	MAQTIIVRGAHAIIDPRLGHAGVIPGGAVVITGGTVVEAGSFAALAPKHLGARIIGDGT
Ga0318551_104278052	3300031896	Soil	MAETIIMRGAHAITDPRLGPAGVIHGGAVAIAAGMVVETGLFDV
Ga0306923_114217642	3300031910	Soil	MAETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFTAIGSKYPGARVLG
Ga0306921_109984012	3300031912	Soil	MRETIIMRGAYVITDPRLGVSGVIAAGAVVIVDGTIRETGPFAA
Ga0306921_123032362	3300031912	Soil	MAETIILRGAHVITDPRLGPAGVIPEGAVAITGGIVAETGPFATITPKYP
Ga0306921_123252141	3300031912	Soil	MADTIIMRGAYTITDPRLGAPGIIPAGAVVIIDGTVKETGLFATIA
Ga0310912_100046121	3300031941	Soil	MAETIIMRGAYAITDPRLREAGVIAGGAVAITGGTV
Ga0310912_103183721	3300031941	Soil	MTETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFAAIAPKYPGISVV
Ga0310916_102415283	3300031942	Soil	MAQTIIMRSAYAITDPRLGRAGLIPGGAVAITDGSVAETGP
Ga0310916_102977861	3300031942	Soil	MRETIIMRGAYVITDPRLGVSGVIAAGAVVIVDGT
Ga0310916_104722071	3300031942	Soil	MTETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFA
Ga0310910_100647021	3300031946	Soil	MTDAIIMHGAYAITDPRLGRSGVIPSGAVVIMDGIVKETGP
Ga0310910_108081191	3300031946	Soil	MTETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGAVC
Ga0306926_122382972	3300031954	Soil	MTDTIMLRGACAITDPRLGASGVIAAGAVVIMDGII
Ga0318530_105040661	3300031959	Soil	MQVMADTIIMRGAYTITDPRLGAPGIITAGAVVIIDGTVKETGPFATIAPKYP
Ga0307479_108566451	3300031962	Hardwood Forest Soil	MTETIIMRGAYVITDPRLGASGVIQAGAVVIADGTIRETGPFAAI
Ga0318531_100135911	3300031981	Soil	MVETIIMRGAYAITDPRMGHAGVIPGGAVAITGGSVAETGP
Ga0318531_101948043	3300031981	Soil	MAQTIIMRGAHALTDPRLGRAGVIPGGAVAITGGM
Ga0306922_114738012	3300032001	Soil	MAQTIIMRGAHALTDPRLGRGGIIPRGAVAMAGGVVVET
Ga0306922_116192361	3300032001	Soil	MTETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKET
Ga0318569_104468332	3300032010	Soil	MAETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFAEIAPK
Ga0310911_100053966	3300032035	Soil	MAETIIMRGAYAITNPRLGNAGVIPGGAVAITGGSVVETGPFVAISPKYPEARV
Ga0310911_107330791	3300032035	Soil	MRETIIMRGAYVITDPRLGVSGVIAAGAVVIVDGTIRETGPFAAIAPKYPGISVVGD
Ga0318549_101844771	3300032041	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFA
Ga0318545_101371542	3300032042	Soil	MEETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFTAIGSKYP
Ga0318558_106036691	3300032044	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITSGSVVE
Ga0318532_100262453	3300032051	Soil	MTDTIIMRGAYAITDPRLGRSGVIPSGAVVIMDGTVKETDPFA
Ga0318575_100098046	3300032055	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITGGSVVETGP
Ga0318533_104446601	3300032059	Soil	MAETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFT
Ga0318533_108832631	3300032059	Soil	MVQTIIMRGAHAITDPRLGQGGVVRKGAVAMTGGVVVETGPF
Ga0318553_103882261	3300032068	Soil	MTDAIIMHGAYAITDPRLGRSGVIPSGAVVIMDGIVKETGPFA
Ga0318553_106154141	3300032068	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTI
Ga0306924_109382841	3300032076	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIKETGPFATIAP
Ga0318577_100125595	3300032091	Soil	MAETIIMRGAYAITNPRLGNAGVIPGGAVAITGGSVVETGPFVAIS
Ga0307471_1012475961	3300032180	Hardwood Forest Soil	LQGCKAMTETIIMRGVYAITDPRLGASGVIPDGAVVIVDGTIRETG
Ga0306920_1010416873	3300032261	Soil	MTDTIVMRGAYAITDPRLGAAGVIPAGAVVIIDGIVKQAGRFAE
Ga0306920_1022113641	3300032261	Soil	MRETIIMRGAYVITDPRLGASGVIPAGAVVIVDGTIRE
Ga0306920_1022605391	3300032261	Soil	MRETIIMRGAYVITDPRLGASGVISAGAVVIVDGTIRETGPFAAIAPKYPGIS
Ga0335074_115409882	3300032895	Soil	MADTLLMRGAHLIADARLGPAGVIRNGAVAITQGVVAETGAFSANS
Ga0310914_107400591	3300033289	Soil	MAETIILRGAYAITDPRLGPAGVIPEGSVAITDGTVAQTGPFAEIAPKYPGARVLGDGR
Ga0318519_103887262	3300033290	Soil	MAETIIMRGAYAVTDPRLGQAGVIPGGAVAITSGSVVETGPFVAIAPKYQNARVI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054502

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences