Metagenome / Metatranscriptome Family F054834

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054834
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	84 residues
Representative Sequence	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Number of Associated Samples	117
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.30 %
% of genes near scaffold ends (potentially truncated)	28.06 %
% of genes from short scaffolds (< 2000 bps)	75.54 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (15.108 % of family members)
Environment Ontology (ENVO)	Unclassified (26.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.482 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 83.13% β-sheet: 0.00% Coil/Unstructured: 16.87%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF00300	His_Phos_1	12.23
PF13191	AAA_16	8.63
PF03485	Arg_tRNA_synt_N	6.47
PF01833	TIG	2.88
PF00155	Aminotran_1_2	2.16
PF01243	Putative_PNPOx	2.16
PF03459	TOBE	2.16
PF13649	Methyltransf_25	2.16
PF12697	Abhydrolase_6	2.16
PF12833	HTH_18	2.16
PF10590	PNP_phzG_C	1.44
PF08281	Sigma70_r4_2	1.44
PF04188	Mannosyl_trans2	1.44
PF00486	Trans_reg_C	1.44
PF00528	BPD_transp_1	1.44
PF01979	Amidohydro_1	0.72
PF00583	Acetyltransf_1	0.72
PF00353	HemolysinCabind	0.72
PF00561	Abhydrolase_1	0.72
PF04290	DctQ	0.72
PF03640	Lipoprotein_15	0.72
PF03447	NAD_binding_3	0.72
PF07136	DUF1385	0.72
PF07676	PD40	0.72
PF01022	HTH_5	0.72
PF00069	Pkinase	0.72
PF09594	GT87	0.72
PF07883	Cupin_2	0.72
PF05746	DALR_1	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.19
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.88
COG5542	Mannosyltransferase related to Gpi18	Carbohydrate transport and metabolism [G]	1.44
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	0.72
COG3872	Uncharacterized conserved protein YqhQ, DUF1385 family	Function unknown [S]	0.72
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.50 %
Unclassified	root	N/A	29.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.50 %
Unclassified	root	N/A	29.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.06 %
Unclassified	root	N/A	29.50 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.44 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.57 %
Unclassified	root	N/A	29.50 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.81 %
Unclassified	root	N/A	29.50 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.04 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.74 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	6.47 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.60 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1.44 %
Klebsormidiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae	1.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.50 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.11 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	6.47 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.60 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.88 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	1.44 %
Klebsormidiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales	1.44 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.72 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.11 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	6.47 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.60 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	2.88 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.44 %
Klebsormidiaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae	1.44 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.11 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	6.47 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.60 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2.88 %
Klebsormidium	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium	1.44 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.44 %
Gryllotalpicola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Gryllotalpicola	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.11 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	6.47 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.60 %
Nocardioides astragali	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides astragali	2.88 %
Klebsormidium nitens	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens	1.44 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.44 %
Gryllotalpicola ginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Gryllotalpicola → Gryllotalpicola ginsengisoli	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9157141	All Organisms → cellular organisms → Bacteria	2524	Open in IMG/M
2228664021\|ICCgaii200_c1103109	Not Available	903	Open in IMG/M
2228664022\|INPgaii200_c1063728	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101808132	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300000955\|JGI1027J12803_102559445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1589	Open in IMG/M
3300000956\|JGI10216J12902_103839036	Not Available	739	Open in IMG/M
3300002459\|JGI24751J29686_10001963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4198	Open in IMG/M
3300002459\|JGI24751J29686_10002221	Not Available	3934	Open in IMG/M
3300002459\|JGI24751J29686_10016633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides astragali	1517	Open in IMG/M
3300002459\|JGI24751J29686_10061907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300003213\|JGI26313J46564_100362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1678	Open in IMG/M
3300004114\|Ga0062593_103118782	Not Available	531	Open in IMG/M
3300005093\|Ga0062594_102053285	Not Available	613	Open in IMG/M
3300005294\|Ga0065705_11001578	Not Available	547	Open in IMG/M
3300005329\|Ga0070683_100158691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2145	Open in IMG/M
3300005331\|Ga0070670_100028657	All Organisms → cellular organisms → Bacteria	4792	Open in IMG/M
3300005331\|Ga0070670_100160008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1951	Open in IMG/M
3300005339\|Ga0070660_100344716	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300005347\|Ga0070668_100276190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1402	Open in IMG/M
3300005354\|Ga0070675_100085024	All Organisms → cellular organisms → Bacteria	2642	Open in IMG/M
3300005406\|Ga0070703_10009946	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300005406\|Ga0070703_10035401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1529	Open in IMG/M
3300005441\|Ga0070700_100013436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4599	Open in IMG/M
3300005471\|Ga0070698_100151749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2264	Open in IMG/M
3300005518\|Ga0070699_100973098	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005564\|Ga0070664_100010332	All Organisms → cellular organisms → Bacteria	7575	Open in IMG/M
3300005617\|Ga0068859_101215787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	830	Open in IMG/M
3300005618\|Ga0068864_100022757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5256	Open in IMG/M
3300005840\|Ga0068870_10204286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides astragali	1200	Open in IMG/M
3300005844\|Ga0068862_100549399	Not Available	1103	Open in IMG/M
3300005937\|Ga0081455_10077529	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300006049\|Ga0075417_10180222	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300006580\|Ga0074049_12903906	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300006852\|Ga0075433_10809221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Gryllotalpicola → Gryllotalpicola ginsengisoli	819	Open in IMG/M
3300006871\|Ga0075434_100924270	Not Available	887	Open in IMG/M
3300006880\|Ga0075429_101116845	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300006969\|Ga0075419_10003467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10104	Open in IMG/M
3300009081\|Ga0105098_10123958	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300009094\|Ga0111539_10129815	Not Available	2951	Open in IMG/M
3300009147\|Ga0114129_10029708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7739	Open in IMG/M
3300009147\|Ga0114129_10811405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1193	Open in IMG/M
3300009156\|Ga0111538_11612179	Not Available	818	Open in IMG/M
3300009156\|Ga0111538_12087650	Not Available	712	Open in IMG/M
3300009157\|Ga0105092_10012785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4406	Open in IMG/M
3300009162\|Ga0075423_10082642	All Organisms → cellular organisms → Bacteria	3348	Open in IMG/M
3300009162\|Ga0075423_11328966	Not Available	769	Open in IMG/M
3300009168\|Ga0105104_10181143	Not Available	1143	Open in IMG/M
3300009553\|Ga0105249_10598598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1157	Open in IMG/M
3300009801\|Ga0105056_1006252	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300009817\|Ga0105062_1068147	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009818\|Ga0105072_1021167	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300009837\|Ga0105058_1037462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1062	Open in IMG/M
3300009837\|Ga0105058_1084501	Not Available	734	Open in IMG/M
3300010041\|Ga0126312_10016521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4924	Open in IMG/M
3300010397\|Ga0134124_11491818	Not Available	704	Open in IMG/M
3300010399\|Ga0134127_13553092	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens	511	Open in IMG/M
3300010403\|Ga0134123_12801616	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300011000\|Ga0138513_100067416	Not Available	551	Open in IMG/M
3300011119\|Ga0105246_10033763	Not Available	3403	Open in IMG/M
3300011119\|Ga0105246_10882977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	800	Open in IMG/M
3300011119\|Ga0105246_10938408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	779	Open in IMG/M
3300012204\|Ga0137374_10190817	Not Available	1776	Open in IMG/M
3300012353\|Ga0137367_10186514	Not Available	1506	Open in IMG/M
3300012355\|Ga0137369_10177240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1669	Open in IMG/M
3300012360\|Ga0137375_10794463	Not Available	762	Open in IMG/M
3300012532\|Ga0137373_10271938	Not Available	1359	Open in IMG/M
3300012896\|Ga0157303_10119344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300012951\|Ga0164300_10176084	Not Available	1026	Open in IMG/M
3300013307\|Ga0157372_12825548	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300013308\|Ga0157375_11997851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	689	Open in IMG/M
3300014325\|Ga0163163_10292132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1682	Open in IMG/M
3300015371\|Ga0132258_11113860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1996	Open in IMG/M
3300015371\|Ga0132258_11662841	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300015372\|Ga0132256_100348011	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300015373\|Ga0132257_100167066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2588	Open in IMG/M
3300015373\|Ga0132257_100448747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1575	Open in IMG/M
3300017997\|Ga0184610_1024978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1638	Open in IMG/M
3300018028\|Ga0184608_10327918	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens	672	Open in IMG/M
3300018031\|Ga0184634_10129560	Not Available	1121	Open in IMG/M
3300018054\|Ga0184621_10017789	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300018054\|Ga0184621_10091687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1067	Open in IMG/M
3300018075\|Ga0184632_10033564	Not Available	2196	Open in IMG/M
3300018078\|Ga0184612_10405295	Not Available	684	Open in IMG/M
3300019767\|Ga0190267_10095874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1165	Open in IMG/M
3300022534\|Ga0224452_1150599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	716	Open in IMG/M
3300022694\|Ga0222623_10002240	All Organisms → cellular organisms → Bacteria	6595	Open in IMG/M
3300022694\|Ga0222623_10065971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1398	Open in IMG/M
3300025885\|Ga0207653_10042340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1498	Open in IMG/M
3300025908\|Ga0207643_10145727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides astragali	1417	Open in IMG/M
3300025910\|Ga0207684_10392119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1194	Open in IMG/M
3300025920\|Ga0207649_10028231	Not Available	3302	Open in IMG/M
3300025925\|Ga0207650_10094133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides astragali	2294	Open in IMG/M
3300025935\|Ga0207709_10399018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1051	Open in IMG/M
3300025944\|Ga0207661_10227694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1650	Open in IMG/M
3300025961\|Ga0207712_10151697	Not Available	1791	Open in IMG/M
3300026075\|Ga0207708_10002511	All Organisms → cellular organisms → Bacteria	13497	Open in IMG/M
3300026095\|Ga0207676_10021025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4783	Open in IMG/M
3300026118\|Ga0207675_102373032	Not Available	543	Open in IMG/M
3300026142\|Ga0207698_11166299	Not Available	784	Open in IMG/M
3300026933\|Ga0207578_1000481	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300027006\|Ga0209896_1001072	All Organisms → cellular organisms → Bacteria	2380	Open in IMG/M
3300027056\|Ga0209879_1021544	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300027379\|Ga0209842_1033627	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300027454\|Ga0207623_100535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1672	Open in IMG/M
3300027695\|Ga0209966_1019345	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300027873\|Ga0209814_10000127	All Organisms → cellular organisms → Bacteria	20718	Open in IMG/M
3300027957\|Ga0209857_1051039	Not Available	728	Open in IMG/M
3300028587\|Ga0247828_10120107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1275	Open in IMG/M
3300028587\|Ga0247828_10709575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	627	Open in IMG/M
3300028589\|Ga0247818_10154384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498	Open in IMG/M
3300028711\|Ga0307293_10005737	Not Available	3301	Open in IMG/M
3300028717\|Ga0307298_10101196	Not Available	819	Open in IMG/M
3300028720\|Ga0307317_10008179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3105	Open in IMG/M
3300028755\|Ga0307316_10030190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1767	Open in IMG/M
3300028784\|Ga0307282_10370972	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300028793\|Ga0307299_10306812	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300028828\|Ga0307312_10752236	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300028875\|Ga0307289_10007271	All Organisms → cellular organisms → Bacteria	4261	Open in IMG/M
3300028876\|Ga0307286_10024238	All Organisms → cellular organisms → Bacteria	1971	Open in IMG/M
3300028878\|Ga0307278_10093776	Not Available	1350	Open in IMG/M
3300028885\|Ga0307304_10296166	Not Available	714	Open in IMG/M
3300031547\|Ga0310887_10055243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1803	Open in IMG/M
3300031547\|Ga0310887_10130864	Not Available	1290	Open in IMG/M
3300031547\|Ga0310887_10273220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	952	Open in IMG/M
3300031562\|Ga0310886_10378330	Not Available	830	Open in IMG/M
3300031847\|Ga0310907_10622157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	590	Open in IMG/M
3300031908\|Ga0310900_10390728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1053	Open in IMG/M
3300031908\|Ga0310900_10797803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	763	Open in IMG/M
3300031913\|Ga0310891_10262096	Not Available	600	Open in IMG/M
3300031944\|Ga0310884_10252472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	965	Open in IMG/M
3300031944\|Ga0310884_10544674	Not Available	687	Open in IMG/M
3300032013\|Ga0310906_10193188	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300032013\|Ga0310906_10194579	Not Available	1225	Open in IMG/M
3300032075\|Ga0310890_10224787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1304	Open in IMG/M
3300032122\|Ga0310895_10270476	Not Available	793	Open in IMG/M
3300032179\|Ga0310889_10445195	Not Available	650	Open in IMG/M
3300033550\|Ga0247829_10085726	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300033551\|Ga0247830_10059494	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300033551\|Ga0247830_10651518	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.75%
Host-Associated	Host-Associated	35.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.40%
Plants	Host-Associated → Plants	35.25%
Aquatic	Environmental → Aquatic	9.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.95%
Sediment	Environmental → Aquatic → Sediment	7.19%
Freshwater	Environmental → Aquatic → Freshwater	2.16%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.19%
Loam	Environmental → Terrestrial → Soil → Loam	7.19%
Sand	Environmental → Terrestrial → Soil → Sand	6.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.16%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	15.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.19%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.47%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.32%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.16%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	15.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.07%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.35%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.16%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.16%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.16%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003213	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026933	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027454	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_00792400	2088090015	Soil	MCSEAAGRHILRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA
ICCgaii200_11031091	2228664021	Soil	ASASSIRFGPRLDMPILRIEMRGNLEAAGRHMLRRALAWASALCALGLGCVAALVGALDTRRVCVGILDATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
INPgaii200_10637283	2228664022	Soil	MCSEAAGRHILRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDSTCDGPNWGKALVAFGLACALLTVGVVLVVRLRRGA
INPhiseqgaiiFebDRAFT_1018081323	3300000364	Soil	MCSEAAGRHILRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDSTCDGPNWGKALVAFGLACALLTVGVVLVVRLRRGA*
JGI1027J12803_1025594451	3300000955	Soil	KTRSRVDRPSSDSHHRPMCSEAAGRHILRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDSTCDGPNWGKALVAFGLACALLTVGVVLVVRLRRGA*
JGI10216J12902_1038390361	3300000956	Soil	SSDSHHRPMCSEAARRRMFRRALAWLAALCALCLGIVAALVGALDTRRVCVGILDSMCDGPKWGEALVAFGLACALLTVGVALVVRLRRGA*
JGI24751J29686_100019632	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	LRPRIRTAPIAWSAALCALGLXFVAALVGALDTRRVCIGIIDSMCDGPNWGEALVAFGLACALLTVGVVXVLRLRRGA*
JGI24751J29686_100022214	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	HHRPVCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
JGI24751J29686_100166331	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGVVL
JGI24751J29686_100619071	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	IAWSAALCALGLGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
JGI26313J46564_1003621	3300003213	Soil	FRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0062593_1031187821	3300004114	Soil	MCSEAAGRHILRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0062594_1020532851	3300005093	Soil	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALAAFGLACALLTFGVVLVVRLRRGA*
Ga0065705_110015781	3300005294	Switchgrass Rhizosphere	PSGDSHHRPMCSEAAGRHTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA*
Ga0070683_1001586911	3300005329	Corn Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRPVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0070670_1000286571	3300005331	Switchgrass Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR*
Ga0070670_1001600084	3300005331	Switchgrass Rhizosphere	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATSDGPNWGEALAAFGLACALLTFGVVLVVRLRRGA*
Ga0070660_1003447163	3300005339	Corn Rhizosphere	LRRALAWSAALCALGLGCVAALVGALDTRRVCAGLLDAMCDGPNWGEALVAFGLACALLTVGLVLVVRLRRGA*
Ga0070668_1002761903	3300005347	Switchgrass Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0070675_1000850243	3300005354	Miscanthus Rhizosphere	VTSRSFVDRPSSDSHHRTMCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0070703_100099462	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LRPRIRTAPIAWSAALCALGLVFVAALVGALDTRRVCIGIIDSMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA*
Ga0070703_100354012	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0070700_1000134365	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0070698_1001517493	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA*
Ga0070699_1009730982	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0070664_1000103327	3300005564	Corn Rhizosphere	LRPRIRTAPIAWSAALCALGLGFVAALVGALDTRRVCIGIIDSMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA*
Ga0068859_1012157872	3300005617	Switchgrass Rhizosphere	LHHRPVCSEAAGRRTFRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0068864_1000227571	3300005618	Switchgrass Rhizosphere	MPILRIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGP*
Ga0068870_102042862	3300005840	Miscanthus Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGP*
Ga0068862_1005493991	3300005844	Switchgrass Rhizosphere	SAALCALGLVFVAALVGALDTRRVCIGIIDSMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA*
Ga0081455_100775293	3300005937	Tabebuia Heterophylla Rhizosphere	MCSEGRHALRRALAWAAALCALGLAGVAALVGALDTRRVCVGVLDEICDGPNWGDALVAFGLACALLTVGVVLVVRLRRGP*
Ga0075417_101802222	3300006049	Populus Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWRDALVAFGLACALLTVGIVLVVRLRRGA*
Ga0074049_129039062	3300006580	Soil	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0075433_108092211	3300006852	Populus Rhizosphere	ACAGNRESASAEHESRVDRASSDSHHRPMCSEAADRHMLWRALAWSAALCALGLGCVAALIGALDTRRVCVGIVDAMCDGPNWGEGLVAFALAGALLTVGVVLVVRLRRGA*
Ga0075434_1009242702	3300006871	Populus Rhizosphere	SASAEHESRVDRASSDSHHRPMCSEAADRHMLWRALAWSAALCALGLGCVAALIGALDTRRVCVGIVDAMCDGPNWGEGLVAFALAGALLTVGVVLVVRLRRGA*
Ga0075429_1011168452	3300006880	Populus Rhizosphere	SDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTIGVVLVVRLRRGA*
Ga0075419_100034679	3300006969	Populus Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWRDALVAFGLACALLTVGIVVVVRLRRGA*
Ga0105098_101239583	3300009081	Freshwater Sediment	MLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDASCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0111539_101298152	3300009094	Populus Rhizosphere	MCSEAAGRHTFRRAIAWSAALCALGIGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACASLIVGVVLVVRLRRGA*
Ga0114129_100297086	3300009147	Populus Rhizosphere	MCSEAADRHMLWRALAWSAALCALGLGCVAALIGALDTRRVCVGIVDAMCDGPNWGEGLVAFALAGALLTVGVVLVVRLRRGA*
Ga0114129_108114052	3300009147	Populus Rhizosphere	MLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA*
Ga0111538_116121791	3300009156	Populus Rhizosphere	MCSEAADRHMLWRALAWSAALCALALGCVAALIGALDTRRVCVGIVDAMCDGPNWGEGLVAFALAGALLTVGVVLVVRLRRGD*
Ga0111538_120876501	3300009156	Populus Rhizosphere	MPILGIEEMRGNLEAAGSHMLRRALAWASALCALGLGCVAALVGALDTRRVCVGILEAMCDGPNWGEALVAFGLAC
Ga0105092_100127855	3300009157	Freshwater Sediment	MLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0075423_100826422	3300009162	Populus Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWRDALVAFGLACALLTVGVVLVVRLRRGA*
Ga0075423_113289661	3300009162	Populus Rhizosphere	MCSEAADRHMLWRALAWSAALCALGLGCVAALIGALDTRRVCVGIVDSMCDGPNWGEGLVAFALAGALLTVGVVLVVRLRRGA*
Ga0105104_101811433	3300009168	Freshwater Sediment	MCSEAAGRHVLRRALAWSAAFCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0105249_105985982	3300009553	Switchgrass Rhizosphere	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATSDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA*
Ga0105056_10062523	3300009801	Groundwater Sand	MLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0105062_10681471	3300009817	Groundwater Sand	EAAGRHMLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0105072_10211672	3300009818	Groundwater Sand	MCSEAAGLHMLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0105058_10374623	3300009837	Groundwater Sand	MCSEGRHWLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLR
Ga0105058_10845011	3300009837	Groundwater Sand	MCSEAAGLHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALLAFGLACAMLTVGVVLVVRLRRGA*
Ga0126312_100165211	3300010041	Serpentine Soil	DRPSSDSHHRPMCSDAAGRHMLRCALAWSAALCALGLGCVAALVGALDTRRVCVGILEAMCDGPNWSEALVAFGLACVFLIVGVVLVVRLRRGA*
Ga0134124_114918182	3300010397	Terrestrial Soil	MLRRALAWSAALCALGLGCLAALVGALHTLRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0134127_135530922	3300010399	Terrestrial Soil	TSRSFVDRPSSDSHHRTMCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGLVLVVRLRRGA*
Ga0134123_128016162	3300010403	Terrestrial Soil	SEGRHWLRRALAWSAALCALGLGCLAALVGALDTRRVCVGITDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA*
Ga0138513_1000674161	3300011000	Soil	IDPMCSDAAGRHLLRRALAWSAALCALGLGCLAALVGALETRRVCVGILDSTCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0105246_100337631	3300011119	Miscanthus Rhizosphere	MCSEAAGRHTFRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0105246_108829771	3300011119	Miscanthus Rhizosphere	MCSEAAGRHTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA*
Ga0105246_109384081	3300011119	Miscanthus Rhizosphere	MPILRIEEMPGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR*
Ga0137374_101908171	3300012204	Vadose Zone Soil	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILESTCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0137367_101865142	3300012353	Vadose Zone Soil	RRALAWLAALCALCLGIVAALVGALDTRRVCVGILDSMCDGPKRGEALVAFGLACALLSVGVALVVRLRRGA*
Ga0137369_101772402	3300012355	Vadose Zone Soil	MLRRALAWSAALCVLGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0137375_107944632	3300012360	Vadose Zone Soil	MGSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILESTCDGPNWGEALVAFGLACALLTVGVVLVVRL
Ga0137373_102719381	3300012532	Vadose Zone Soil	MLRRALAWLAALCALCLGIVAALVGALDTRRVCVGILDSMCDGPKRGEALVAFGLACALLSVGVALVVRLRRGA*
Ga0157303_101193443	3300012896	Soil	SVDRPSSDSHHRPVCSEAAGRRTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0164300_101760842	3300012951	Soil	MPILRIEEMRGNLEAAGRHMLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR*
Ga0157372_128255481	3300013307	Corn Rhizosphere	DSHHRTLCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGLVLVVRLRRGA*
Ga0157375_119978511	3300013308	Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0163163_102921324	3300014325	Switchgrass Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGP*
Ga0132258_111138602	3300015371	Arabidopsis Rhizosphere	MPILRIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALNTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR*
Ga0132258_116628412	3300015371	Arabidopsis Rhizosphere	MCSDGRHSLRRALAWSAALCAVGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA*
Ga0132256_1003480111	3300015372	Arabidopsis Rhizosphere	MPILRIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA*
Ga0132257_1001670661	3300015373	Arabidopsis Rhizosphere	MPILRIEEMRGNLEAAGRHMLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA*
Ga0132257_1004487471	3300015373	Arabidopsis Rhizosphere	MCSEAAGRHTFRRAIAWSAALCALGLGWVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
Ga0184610_10249783	3300017997	Groundwater Sediment	MCSEANGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGIVLVVRLRRGA
Ga0184608_103279182	3300018028	Groundwater Sediment	LTSRSFVDRPSIDSHHRTMCSDGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA
Ga0184634_101295602	3300018031	Groundwater Sediment	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0184621_100177893	3300018054	Groundwater Sediment	MLRRALAWSAAFCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVIRLRRGA
Ga0184621_100916873	3300018054	Groundwater Sediment	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA
Ga0184632_100335642	3300018075	Groundwater Sediment	MLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0184612_104052952	3300018078	Groundwater Sediment	RVDPPSSDSHHRPMCSEANGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGIVLVVRLRRGA
Ga0190267_100958742	3300019767	Soil	MCSEANGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA
Ga0224452_11505993	3300022534	Groundwater Sediment	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALLAFGLACALLTVGVVLVVRLRRGA
Ga0222623_100022401	3300022694	Groundwater Sediment	RRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGIVLVVRLRRGA
Ga0222623_100659714	3300022694	Groundwater Sediment	RRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWAEAVVAFGLACALLTVGVVLVVRLRRGA
Ga0207653_100423403	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207643_101457271	3300025908	Miscanthus Rhizosphere	MPILRIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALNTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHR
Ga0207684_103921193	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRPVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207649_100282312	3300025920	Corn Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207650_100941331	3300025925	Switchgrass Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGV
Ga0207709_103990181	3300025935	Miscanthus Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGIFDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0207661_102276943	3300025944	Corn Rhizosphere	CGRCWWGCCGRASVDRPSSDLHHRPVCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRPVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207712_101516973	3300025961	Switchgrass Rhizosphere	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILQATCDGPNWGEALVAFGLACALLTFGVVLVVRLRRGA
Ga0207708_100025114	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0207676_100210257	3300026095	Switchgrass Rhizosphere	MPILRIEEMRGNLEASGRHMLQRALAWASALCALGLGCVAALVAALDTRRVCVGIIEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGP
Ga0207675_1023730321	3300026118	Switchgrass Rhizosphere	HMLRRALAWSAALCALGLGCLAALVGALDTRRVCIGILEATCDGPNWGEALAAFGLACALLTFGVVLVVRLRRGA
Ga0207698_111662992	3300026142	Corn Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGLLDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0207578_10004813	3300026933	Soil	MCSDGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0209896_10010723	3300027006	Groundwater Sand	MLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDATCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0209879_10215442	3300027056	Groundwater Sand	MCSEGRHSLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0209842_10336272	3300027379	Groundwater Sand	MLRRALAWSAALCALGLGCVAALVGALDTRRVCVGILDAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRRGA
Ga0207623_1005353	3300027454	Soil	TFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0209966_10193453	3300027695	Arabidopsis Thaliana Rhizosphere	MCSEGRHWLRRALAWSAALCALGLGCLAALVGALDTRRVCVGITDAMCDGPNWGDALVAFGLACALLIVGVVLVVRLRRGA
Ga0209814_100001275	3300027873	Populus Rhizosphere	MCSDGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWRDALVAFGLACALLTVGIVLVVRLRRGA
Ga0209857_10510392	3300027957	Groundwater Sand	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRRA
Ga0247828_101201072	3300028587	Soil	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDATCDGPNWGDALVAFALACALLTVGVVLVVRLRRGS
Ga0247828_107095751	3300028587	Soil	MRGNLEAAGRHMLRRALAWASALCALGLGCVATLVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0247818_101543841	3300028589	Soil	PRPSSDSHHRTMCSDRSHSLRRALAWSAALCALGLGCVAALVGALDTRRVCAGILDAMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA
Ga0307293_100057373	3300028711	Soil	MLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWAEAVVAFGLACALLTVGVVLVVRLRRGA
Ga0307298_101011962	3300028717	Soil	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWAEAVVAFGLACALLTVGVVLVIRLRRGA
Ga0307317_100081794	3300028720	Soil	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEAVVAFGLACALLTVGVVLVVRLRRGA
Ga0307316_100301902	3300028755	Soil	MCSEAAGRHMLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWAEAVVAFGLACALLTVGVVLVVRLRRGA
Ga0307282_103709721	3300028784	Soil	DRPSSDSHHRPMCSEAAGRHMLRRALAWSAALCALGLGCAAALVGALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVIVVRLRRGA
Ga0307299_103068121	3300028793	Soil	SLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA
Ga0307312_107522362	3300028828	Soil	MCSEAAGRHMLRRALAWSAALCALGLGCAAALVGALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVIVVRLRRGA
Ga0307289_100072716	3300028875	Soil	RALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGIVLVVRLRRGA
Ga0307286_100242384	3300028876	Soil	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTLRVCVGILDAMCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA
Ga0307278_100937762	3300028878	Soil	PSSDSHHRPMCSEANGRHTLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGIVLVVRLRRGA
Ga0307304_102961662	3300028885	Soil	MLRRALAWSAALCALGLGCAAALVGALDTRRVCVGILEATCDGPNWGEALVAFGLACALLTVGVVLVIRLRRGA
Ga0310887_100552431	3300031547	Soil	MRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310887_101308642	3300031547	Soil	MRGNLEAAGRHTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0310887_102732202	3300031547	Soil	MCSEAAGRHTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA
Ga0310886_103783302	3300031562	Soil	MCSEAAGRHTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA
Ga0310907_106221572	3300031847	Soil	MPTLGIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310900_103907281	3300031908	Soil	MCSEAAGRHTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVV
Ga0310900_107978031	3300031908	Soil	MRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALNTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310891_102620961	3300031913	Soil	MRGNLEAAGRHMLRRALAWASALCALGLGCVAALVGALDTRRVCVGVLEATCDGPNWGDALVAFGLACALLTVGVVLVVRLRRGA
Ga0310884_102524723	3300031944	Soil	VCSEAAGRRTFRRAIAWSAALCALGIGCVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA
Ga0310884_105446742	3300031944	Soil	MRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVLRLRRGA
Ga0310906_101931881	3300032013	Soil	MPILRIEEMRGNLEAAGRHLLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310906_101945792	3300032013	Soil	MRGNLEAAGRHTFRRAIAWSAALCALGLGGVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA
Ga0310890_102247872	3300032075	Soil	MPILRIEEMRGNLEAAGRHMLRRALAWASALCALGLGCVAALVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310895_102704761	3300032122	Soil	ITPEVSSSDASASSIRFGPRLAMPILRIEEMRGNLEAAGRHMLRRALAWASALCALGLGCVATLVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0310889_104451951	3300032179	Soil	MRGNLEAAGRHLLRRALAWASALCALGLGCVATLVAALDTRRVCVGILEAMCDGPNWGEALVAFGLACALLTVGVVLVVRLRAEHRVGR
Ga0247829_100857263	3300033550	Soil	MCSEGRHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFALACALLTVGVVLVVRLRRGS
Ga0247830_100594944	3300033551	Soil	MCSDRSHSLRRALAWSAALCALGLGCLAALVGALDTRRVCVGILDAMCDGPNWGDALVAFALACALLTVGVVLVVRLRRGS
Ga0247830_106515182	3300033551	Soil	MCSEAAGRHTFRRAIAWSAALCALGIGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRRGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054834

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences