NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F055343

Metagenome / Metatranscriptome Family F055343

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F055343
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 40 residues
Representative Sequence VPLFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQG
Number of Associated Samples 80
Number of Associated Scaffolds 137

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 57.97 %
% of genes near scaffold ends (potentially truncated) 97.10 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(62.319 % of family members)
Environment Ontology (ENVO) Unclassified
(90.580 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(88.406 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.43%    β-sheet: 0.00%    Coil/Unstructured: 69.57%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005335|Ga0070666_11281538Not Available546Open in IMG/M
3300005355|Ga0070671_101752338Not Available551Open in IMG/M
3300005618|Ga0068864_101009628Not Available825Open in IMG/M
3300005842|Ga0068858_101232922Not Available735Open in IMG/M
3300005842|Ga0068858_101885700Not Available591Open in IMG/M
3300005842|Ga0068858_102064778Not Available563Open in IMG/M
3300005843|Ga0068860_101085552Not Available819Open in IMG/M
3300005843|Ga0068860_101971157Not Available605Open in IMG/M
3300009980|Ga0105135_129259Not Available514Open in IMG/M
3300009989|Ga0105131_132260Not Available563Open in IMG/M
3300009990|Ga0105132_135670Not Available547Open in IMG/M
3300010371|Ga0134125_11649693Not Available698Open in IMG/M
3300010401|Ga0134121_11323530Not Available727Open in IMG/M
3300013306|Ga0163162_11481811Not Available773Open in IMG/M
3300014968|Ga0157379_12452515Not Available521Open in IMG/M
3300015273|Ga0182102_1037693Not Available536Open in IMG/M
3300015278|Ga0182099_1050930Not Available561Open in IMG/M
3300015280|Ga0182100_1075656Not Available555Open in IMG/M
3300015284|Ga0182101_1049034Not Available643Open in IMG/M
3300015284|Ga0182101_1097882Not Available506Open in IMG/M
3300015290|Ga0182105_1066684Not Available598Open in IMG/M
3300015293|Ga0182103_1087877Not Available533Open in IMG/M
3300015301|Ga0182184_1087423Not Available529Open in IMG/M
3300015309|Ga0182098_1099197Not Available552Open in IMG/M
3300015310|Ga0182162_1060192Not Available667Open in IMG/M
3300015312|Ga0182168_1119626Not Available531Open in IMG/M
3300015312|Ga0182168_1120215Not Available530Open in IMG/M
3300015313|Ga0182164_1100039Not Available570Open in IMG/M
3300015313|Ga0182164_1133207Not Available509Open in IMG/M
3300015315|Ga0182120_1014840Not Available1088Open in IMG/M
3300015315|Ga0182120_1129154Not Available518Open in IMG/M
3300015316|Ga0182121_1044049Not Available799Open in IMG/M
3300015317|Ga0182136_1106273Not Available563Open in IMG/M
3300015318|Ga0182181_1071995Not Available594Open in IMG/M
3300015318|Ga0182181_1074496Not Available587Open in IMG/M
3300015318|Ga0182181_1077884Not Available578Open in IMG/M
3300015319|Ga0182130_1036045Not Available803Open in IMG/M
3300015319|Ga0182130_1089712Not Available591Open in IMG/M
3300015320|Ga0182165_1061973Not Available703Open in IMG/M
3300015320|Ga0182165_1084097Not Available628Open in IMG/M
3300015320|Ga0182165_1085775Not Available623Open in IMG/M
3300015320|Ga0182165_1099540Not Available589Open in IMG/M
3300015320|Ga0182165_1145862Not Available504Open in IMG/M
3300015324|Ga0182134_1078499Not Available644Open in IMG/M
3300015325|Ga0182148_1099225Not Available585Open in IMG/M
3300015325|Ga0182148_1100266Not Available582Open in IMG/M
3300015325|Ga0182148_1113496Not Available555Open in IMG/M
3300015326|Ga0182166_1133401Not Available520Open in IMG/M
3300015327|Ga0182114_1087030Not Available649Open in IMG/M
3300015329|Ga0182135_1091741Not Available619Open in IMG/M
3300015330|Ga0182152_1123155Not Available552Open in IMG/M
3300015332|Ga0182117_1095285Not Available643Open in IMG/M
3300015332|Ga0182117_1135269Not Available555Open in IMG/M
3300015336|Ga0182150_1067419Not Available716Open in IMG/M
3300015336|Ga0182150_1087051Not Available651Open in IMG/M
3300015338|Ga0182137_1067634Not Available754Open in IMG/M
3300015340|Ga0182133_1177382Not Available520Open in IMG/M
3300015348|Ga0182115_1194839Not Available650Open in IMG/M
3300015348|Ga0182115_1242739Not Available574Open in IMG/M
3300015348|Ga0182115_1266582Not Available543Open in IMG/M
3300015349|Ga0182185_1262018Not Available527Open in IMG/M
3300015349|Ga0182185_1279788Not Available510Open in IMG/M
3300015349|Ga0182185_1284087Not Available506Open in IMG/M
3300015350|Ga0182163_1162653Not Available696Open in IMG/M
3300015350|Ga0182163_1245567Not Available561Open in IMG/M
3300015352|Ga0182169_1123840Not Available837Open in IMG/M
3300015352|Ga0182169_1123840Not Available837Open in IMG/M
3300015352|Ga0182169_1197686Not Available657Open in IMG/M
3300015352|Ga0182169_1205972Not Available642Open in IMG/M
3300015352|Ga0182169_1245662Not Available582Open in IMG/M
3300015353|Ga0182179_1068245Not Available1011Open in IMG/M
3300015353|Ga0182179_1169209Not Available687Open in IMG/M
3300015353|Ga0182179_1205121Not Available628Open in IMG/M
3300015353|Ga0182179_1211548Not Available619Open in IMG/M
3300015354|Ga0182167_1305168Not Available564Open in IMG/M
3300015354|Ga0182167_1308211Not Available560Open in IMG/M
3300017408|Ga0182197_1079705Not Available642Open in IMG/M
3300017408|Ga0182197_1120876Not Available549Open in IMG/M
3300017422|Ga0182201_1086345Not Available602Open in IMG/M
3300017432|Ga0182196_1130232Not Available536Open in IMG/M
3300017435|Ga0182194_1143017Not Available518Open in IMG/M
3300017439|Ga0182200_1064381Not Available697Open in IMG/M
3300017439|Ga0182200_1082060Not Available642Open in IMG/M
3300017440|Ga0182214_1092818Not Available638Open in IMG/M
3300017440|Ga0182214_1102308Not Available611Open in IMG/M
3300017440|Ga0182214_1111775Not Available589Open in IMG/M
3300017440|Ga0182214_1122115Not Available566Open in IMG/M
3300017445|Ga0182198_1094508Not Available676Open in IMG/M
3300017445|Ga0182198_1127351Not Available604Open in IMG/M
3300017693|Ga0182216_1081515Not Available749Open in IMG/M
3300017693|Ga0182216_1136464Not Available614Open in IMG/M
3300017693|Ga0182216_1141788Not Available605Open in IMG/M
3300017693|Ga0182216_1164132Not Available571Open in IMG/M
3300017693|Ga0182216_1176020Not Available555Open in IMG/M
3300017693|Ga0182216_1215410Not Available510Open in IMG/M
3300017694|Ga0182211_1100824Not Available676Open in IMG/M
3300020023|Ga0182178_1008076Not Available716Open in IMG/M
3300020023|Ga0182178_1014643Not Available587Open in IMG/M
3300026035|Ga0207703_12135162Not Available536Open in IMG/M
3300028050|Ga0268328_1033212Not Available663Open in IMG/M
3300028050|Ga0268328_1033361Not Available662Open in IMG/M
3300028050|Ga0268328_1044004Not Available602Open in IMG/M
3300028050|Ga0268328_1052263Not Available566Open in IMG/M
3300028050|Ga0268328_1053782Not Available560Open in IMG/M
3300028056|Ga0268330_1016567Not Available794Open in IMG/M
3300028056|Ga0268330_1017366Not Available782Open in IMG/M
3300028056|Ga0268330_1020592Not Available741Open in IMG/M
3300028056|Ga0268330_1048216Not Available553Open in IMG/M
3300028057|Ga0268352_1041804Not Available513Open in IMG/M
3300028058|Ga0268332_1005306Not Available1178Open in IMG/M
3300028058|Ga0268332_1023909Not Available766Open in IMG/M
3300028058|Ga0268332_1046684Not Available613Open in IMG/M
3300028058|Ga0268332_1056607Not Available571Open in IMG/M
3300028061|Ga0268314_1043416Not Available546Open in IMG/M
3300028064|Ga0268340_1055494Not Available594Open in IMG/M
3300028064|Ga0268340_1063116Not Available566Open in IMG/M
3300028139|Ga0268355_1018634Not Available506Open in IMG/M
3300028140|Ga0268334_1014205Not Available557Open in IMG/M
3300028143|Ga0268348_1003044Not Available968Open in IMG/M
3300028143|Ga0268348_1018387Not Available562Open in IMG/M
3300028151|Ga0268308_1025486Not Available552Open in IMG/M
3300028152|Ga0268336_1017033Not Available606Open in IMG/M
3300028153|Ga0268320_1017524Not Available594Open in IMG/M
3300028154|Ga0268341_1015467Not Available630Open in IMG/M
3300028154|Ga0268341_1026456Not Available534Open in IMG/M
3300028262|Ga0268310_1006216Not Available988Open in IMG/M
3300028262|Ga0268310_1010717Not Available838Open in IMG/M
3300028262|Ga0268310_1012593Not Available798Open in IMG/M
3300028464|Ga0268302_104746Not Available617Open in IMG/M
3300028466|Ga0268321_108544Not Available550Open in IMG/M
3300028471|Ga0268323_1015694Not Available558Open in IMG/M
3300028472|Ga0268315_1018836Not Available568Open in IMG/M
3300028473|Ga0268319_1017084Not Available562Open in IMG/M
3300028474|Ga0268331_1014956Not Available614Open in IMG/M
3300028529|Ga0268311_1024533Not Available535Open in IMG/M
3300032468|Ga0214482_1059831Not Available735Open in IMG/M
3300032823|Ga0314723_1029151Not Available1037Open in IMG/M
3300032845|Ga0314727_1057023Not Available521Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere62.32%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere26.09%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.07%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated2.17%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.72%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028057Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028064Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028139Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028140Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028464Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028466Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028471Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028473Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032468Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032823Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032845Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070666_1128153813300005335Switchgrass RhizosphereYSAPLFQRDRELPILDPVACVIAFKLHGEGIRESQVLSIALPG*
Ga0070671_10175233823300005355Switchgrass RhizosphereVPLFQLYRELPILDPVA*VIAFKLHGEGIRGSQALSIALQG
Ga0068864_10100962813300005618Switchgrass RhizosphereVPLFQQERELPILDPVACVIAFKLHGEGIRGSQVLSIALP
Ga0068858_10123292223300005842Switchgrass RhizosphereMPLLQRDRELPILELVA*VIAFKLHGEGIRGSKALSITLQG*APVE
Ga0068858_10188570013300005842Switchgrass RhizosphereVLLFQRDQELPIMDPVA*VIAFKLHGEGIRGSQAL
Ga0068858_10206477823300005842Switchgrass RhizosphereVPLFQWDRELPILDPVALVIAFKLHGDGIRGSQALSITLQGR
Ga0068860_10108555213300005843Switchgrass RhizosphereFVPQFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIAL*
Ga0068860_10197115713300005843Switchgrass RhizosphereMPLFQRDRELPILDPVACVIAFKLHGEGIRGSQVLSI
Ga0105135_12925913300009980Switchgrass AssociatedVPLFQRDRELPILDPVALVTAFKLHGEGIRGSQALSIALQG
Ga0105131_13226023300009989Switchgrass AssociatedMPLFQRVRELPIFDPVA*VIAFKLHGEGIRGSQALSIALQG*
Ga0105132_13567013300009990Switchgrass AssociatedMPLLQRDRELPILDPVA*VIAFKPHGEGIRGSQALSIALQG*APDE
Ga0134125_1164969313300010371Terrestrial SoilVPLFQRDRELPILDPVA*VIAFKLHGEGIQGSQALSIALQG*
Ga0134121_1132353013300010401Terrestrial SoilFQRDRELLILDPVA*VIAFKLNGEGIRGSQALSIAL*
Ga0163162_1148181113300013306Switchgrass RhizosphereQFQRGRELPTLDPVACIIAFKLHWEGIRGSLAMSIALQG*
Ga0157379_1245251513300014968Switchgrass RhizosphereMPLFQWDRELPILDPVA*VIAFKLHGEGIRGSQALSIAL
Ga0182102_103769313300015273Switchgrass PhyllosphereVPLFQQDRERPILDHVACVLVFKLHGEGFRGSQALSIALQGCAPDESL
Ga0182099_105093013300015278Switchgrass PhyllosphereMPLFQRDRELPIFDPVASVIAFKLHGGGIWGSQALYIALQG*
Ga0182100_107565613300015280Switchgrass PhyllosphereDRELPIFYPVALIIAFKLHGEGIRGSQALSIALQG*
Ga0182101_104903413300015284Switchgrass PhyllosphereMPLFQRDRELPILDPVACVIAFKLHGEGIRGSQVLSIALPG*APDEYFL
Ga0182101_109788213300015284Switchgrass PhyllosphereMPLFQRD*ELPILNPVA*VIAFRLHGEGIRGSQALSIALQG
Ga0182105_106668413300015290Switchgrass PhyllosphereVPLFQWDRELPILDPVE*VMAFKQHMEGIRVSQALSIAQ*
Ga0182103_108787713300015293Switchgrass PhyllosphereMPLFQQDRELLILDIVA*VIAFKLHGEGIRGALALSIALQGYAPDES
Ga0182184_108742313300015301Switchgrass PhyllosphereVPLFQRDRELPILDPVARVIAFKLHGKGIRGSQDLSITLK
Ga0182098_109919713300015309Switchgrass PhyllosphereMPLFQLVRELPILDPVA*FIAFKLHGQGIRGSQALSIGLQG*
Ga0182162_106019213300015310Switchgrass PhyllosphereVPLFQRDRELPILDPVELVIAFKLHGESIRGSQALSIALQG*
Ga0182168_111962613300015312Switchgrass PhyllosphereMHLFQRDRELPILNHVA*VIAFNLHGEGIRGSQALSIAL
Ga0182168_112021513300015312Switchgrass PhyllosphereLFQRD*ELPILDPVA*VIAFKLHTEGIRGSQALSITQ*
Ga0182164_110003913300015313Switchgrass PhyllosphereVTQFQRDRELPILDPVA*VIAFKLHGEGIRASQALSMALQG*APDE
Ga0182164_113320713300015313Switchgrass PhyllosphereMYSVPLFQWDRELPILDPVA*VIAIKLHGEGIRGAQA
Ga0182120_101484013300015315Switchgrass PhyllosphereVPLFQRDRQLPILDPVA*VIAFKLHGEGIRGSQALSIALQG*
Ga0182120_112915413300015315Switchgrass PhyllosphereELQILDPVA*VIAFKLHGEGIRGSQALSIILQG*APD*
Ga0182121_104404913300015316Switchgrass PhyllosphereVPLFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQG*
Ga0182136_110627313300015317Switchgrass PhyllosphereVPPFQQGRERSILDPVA*VIAFKLHEEGIRGSQALSI
Ga0182181_107199513300015318Switchgrass PhyllospherePLFQQDRELPILDPVACVIAFKLHGKGIRGSQVLSIALPG*
Ga0182181_107449613300015318Switchgrass PhyllosphereMPLFQQDQELPILDPVA*VIAFKLHGEGIRGSQAL
Ga0182181_107788413300015318Switchgrass PhyllosphereFQRDRELPILDPVAGVISFKLNGEGIRGPQALSIALQG*
Ga0182130_103604513300015319Switchgrass PhyllosphereRELPILDPVACVIAFKLHGEGIRGSQVMSITLPG*
Ga0182130_108971213300015319Switchgrass PhyllosphereVPLFQQDQELPILDPVA*VIAFKLHAEGIRGSQALSIAL
Ga0182165_106197313300015320Switchgrass PhyllosphereLLQRDRELPILEPVA*VIAFKLHGEGIRGSQALSIALQG*AQD*
Ga0182165_108409713300015320Switchgrass PhyllosphereVPLFQRDRALPILDPVACVIAFKLHGEGTRGSQALS
Ga0182165_108577513300015320Switchgrass PhyllosphereRDRELPILDPIACVIAFKLHGEGIRGSQVLSIAL*
Ga0182165_109954023300015320Switchgrass PhyllosphereMPIFQWDRELLILDPVACVIAFKLHGEGIRGSQALSIAL
Ga0182165_114586213300015320Switchgrass PhyllosphereVPLVQRDRELPILGPVARVLAFELHGEGIRGSQALSIALQG*
Ga0182134_107849913300015324Switchgrass PhyllosphereLFQRDRELPILDPVACVIAIKLHEEGIRGSQVLSIALLG*
Ga0182148_109922513300015325Switchgrass PhyllosphereMPLFQRDRELPILDPVACVIAFKLHGEGIRGSQVLSIALPG
Ga0182148_110026613300015325Switchgrass PhyllosphereVPLLQRDRELPILEPVA*AIAFKLHGQGIRGPKALSITLQG*APDESL
Ga0182148_111349613300015325Switchgrass PhyllosphereMPLFQWDRELLILDPVA*VIAFKLHGEGIRGSQALSIAL
Ga0182166_113340113300015326Switchgrass PhyllosphereVPLLQRDQELPILEPVA*VIAFKLHGEGIRGYKALSIT
Ga0182114_108703013300015327Switchgrass PhyllosphereSVLVFQRDRELPILDPVARVIAFKLHGKGIRGSQDLSITLKG*
Ga0182135_109174113300015329Switchgrass PhyllosphereSILPLFQRDRVLSILDLVARVIAFKLHVEGIRGSQALSIAL*
Ga0182152_112315513300015330Switchgrass PhyllosphereVPLFQQDRELQILDPVARVIAFKLHGEGIRGSQALSIAL
Ga0182117_109528513300015332Switchgrass PhyllosphereMGKYSMPLSQRDRELPILDPIA*VIAFKLHGEGIRGSQ
Ga0182117_113526913300015332Switchgrass PhyllosphereQWDRELPILDPVA*VIAFKLHREGIRGSQALSIAL*
Ga0182150_106741913300015336Switchgrass PhyllosphereQRDRELQILDPVA*VIAFKLHGEGIRGSQALSIILLG*ALD*
Ga0182150_108705113300015336Switchgrass PhyllosphereVPLFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIAL
Ga0182137_106763413300015338Switchgrass PhyllosphereQWDRELPILDPIA*VIAIKLHGEGIRGSQALSIALQG*
Ga0182133_117738223300015340Switchgrass PhyllosphereSVPLFQRDRELPILDPVA*VIAFKLHGEGIPDSQAQSIAL*
Ga0182115_119483913300015348Switchgrass PhyllosphereVPLLQQDRELPILEPVA*VIAFKLHGEGIQGSKALSITLQG
Ga0182115_124273913300015348Switchgrass PhyllosphereMPLFQRDQELPILDPVA*VIAFKLHEEGIRGSQAL
Ga0182115_126658213300015348Switchgrass PhyllosphereMPLFERDRELPILDPVAIVIAFKLHGEGIRGSQALSITLQG*APDE
Ga0182185_126201823300015349Switchgrass PhyllosphereMPLFQRDRERPILDPVAQVMAFKLHREGIRGSQAMSIALQG*
Ga0182185_127978813300015349Switchgrass PhyllospherePLFQRDRELPILDPVAQVIAFKLHAEGIRGSQALSIALQG*
Ga0182185_128408713300015349Switchgrass PhyllospherePLFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQG*
Ga0182163_116265313300015350Switchgrass PhyllospherePLFQRDRELPILDPVA*VIAFKLHGEGIRGSQAMSITL*
Ga0182163_124556713300015350Switchgrass PhyllosphereMPLFQRD*QLPILDPVA*VIAFKLHGEGIRGSHALSIALQG*AP
Ga0182169_112384013300015352Switchgrass PhyllosphereMPLLQRDRELPILDPVACIIAFKLHGEGIRGSQVLSIALQG
Ga0182169_112384023300015352Switchgrass PhyllosphereFQRDRELPILDPVACVIAFKLHGEGIRGSQVLSIALPG*
Ga0182169_119768613300015352Switchgrass PhyllosphereMPLFERDRELPILDPVALVIAFKLHGEGIRGSQALSIALQG
Ga0182169_120597213300015352Switchgrass PhyllosphereVPLFQQDRERQILDPVARVIAFKLHGEGIRGSQALSIALQG*
Ga0182169_124566213300015352Switchgrass PhyllosphereVPLFQRNRELPVLDPVASVIAFKQYGEGIRGSQDLSITL
Ga0182179_106824523300015353Switchgrass PhyllosphereQRDRELPISDPVA*DISFKLHGEGIRGSQALSIALQG*APDESF*
Ga0182179_116920913300015353Switchgrass PhyllosphereQDRELPILDPVA*VIAFKLHGEGIRGSQALSIAL*
Ga0182179_120512113300015353Switchgrass PhyllosphereMPLFQRDQELPILDPVA*VIAFKLHGEGIRGSQAL
Ga0182179_121154823300015353Switchgrass PhyllosphereSVPLFQWDRELPILDPVARVISFKLHGEGIRGSQALSIALQG*
Ga0182167_130516813300015354Switchgrass PhyllosphereQQDRELPILDAVA*VIAFKLHVEGIRGSQALSIAL*
Ga0182167_130821113300015354Switchgrass PhyllosphereQWDRELPILDPVA*VIAFKLHGEGIRGYQALSIAL*
Ga0182197_107970513300017408Switchgrass PhyllosphereVPLFQRDRELPILDHVAYVIALKLHGEGIRGSQAMSITLQGXVIDEPFL
Ga0182197_112087613300017408Switchgrass PhyllosphereFEQDRELPILDPVALVIAFKLHGEGIRGSQALSIALQG
Ga0182201_108634513300017422Switchgrass PhyllosphereVPLFQRDRELPIFDPVAKVIAFKLHREGIRGSQALSIILQGRVPD
Ga0182196_113023213300017432Switchgrass PhyllosphereVPPFQRDRECPILDPVAXVMVFKLHGEGIRGSEALSIAL
Ga0182194_114301713300017435Switchgrass PhyllosphereMPLFQWDRELPILDPVAXVIVFEMHGEGIRGSQALSIA
Ga0182200_106438113300017439Switchgrass PhyllosphereMPLFQRDRELPILDPVAXVIAFKLNGEGIPGSQALS
Ga0182200_108206013300017439Switchgrass PhyllosphereMPLFQHDRELPVLDPVAXVIAFKLHGEGIRGSQAL
Ga0182214_109281813300017440Switchgrass PhyllosphereVPLFERDRELPILDPVAXVIAYKMHGEGIRGSQALSIALQ
Ga0182214_110230813300017440Switchgrass PhyllosphereFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQG
Ga0182214_111177513300017440Switchgrass PhyllosphereMLLFQRDRELPILDPVAXVIAFKLHGEGIRGSQALS
Ga0182214_112211513300017440Switchgrass PhyllosphereMPLFQRDRELPILDPVAXVIAFKLHGEGIRGSQALSIAQQGLG
Ga0182198_109450813300017445Switchgrass PhyllosphereMPPFQQDRERPILDPVVWVIAFKLHREGTRGFQALSIALY
Ga0182198_112735113300017445Switchgrass PhyllospherePLFQQDRELPILDHVAXVIAFKLHMEGIRGSQALSIAL
Ga0182216_108151513300017693Switchgrass PhyllosphereLFQQNXEFLILDPVAXVIAFKLHGEGIRGSQALSIAL
Ga0182216_113646413300017693Switchgrass PhyllosphereVPIFQRDRDPPILDPVAXVTAFKLHMEGIRRTQALSIALQGXAPDESY
Ga0182216_114178823300017693Switchgrass PhyllosphereMQLFQRDRELPILDPVAXVIAFKLHGEGIWGSQALSIALQGXAPD
Ga0182216_116413213300017693Switchgrass PhyllosphereVPLFQQDXELPILDPVACVIAFELHGEGIRGSQALSIALKGXALDESF
Ga0182216_117602013300017693Switchgrass PhyllosphereVPLFKWDLELPILDPVAXVAFKLHGEGIRGSQALSI
Ga0182216_121541013300017693Switchgrass PhyllosphereVPLFQRDRELPILDPVAXVIAFKLHGEGIQGSQALSIAL
Ga0182211_110082413300017694Switchgrass PhyllosphereMPLFQRDRELLILDPVAXVIAFKLHGQGIRGSQALSIAL
Ga0182178_100807613300020023Switchgrass PhyllosphereVPLFQRDQELPILDPVACVMAFKLHGEGIRGSQVLSIALP
Ga0182178_101464313300020023Switchgrass PhyllosphereLFQWDRELPILDPVAXVIAFKLHREGIRGSQALSIAL
Ga0207703_1213516213300026035Switchgrass RhizosphereMPLFQQDRELPILDPVAXVIAFKLHRKGIRGSQAL
Ga0268328_103321213300028050PhyllosphereVPLLQQDRELPILEPVAXVIAFKLHGEGIRGSKALSITLQGXAIVESF
Ga0268328_103336113300028050PhyllosphereSVPLFQQDQELPILDPIACVIAFKLHGEGIRGSQVLSIALLG
Ga0268328_104400413300028050PhyllosphereMPLFQRGRELPILDPVAXVIAFKLHGEGIRGSQALSIAL
Ga0268328_105226313300028050PhyllosphereVTLFQQDRELPILDPVAXVIAFKLHGEGIRGSQALSIAL
Ga0268328_105378213300028050PhyllosphereVPLFQRDRELPILDPIARVIAFKLHGEGIRGSQALS
Ga0268330_101656713300028056PhyllosphereVPLFQRDGELPILDPVACVIAFKLHGEGIRGSQALSIALQ
Ga0268330_101736613300028056PhyllosphereRDRELPILDPVACVIGFKLHGEGIRGSQALSIALQG
Ga0268330_102059213300028056PhyllospherePILIWDXELPILDPVAXVIAFKLHEEGIRGSQALSIAL
Ga0268330_104821613300028056PhyllosphereVPLFQRDRELPILDPVAXVIAFKLHGEGIRGSQALSIALQGXA
Ga0268352_104180413300028057PhyllosphereMPLLQQDRELPILDPVAXVIAFKLQGEGIRASQALSIILQG
Ga0268332_100530613300028058PhyllosphereVPLFQQDQELPILDPVAXVIAFKLHGEGIRGSQAL
Ga0268332_102390913300028058PhyllosphereMPLFQQDRELPILDPEARVIAIKLHGEGIRGSQALSIALQG
Ga0268332_104668413300028058PhyllosphereLQRDRELPILDPVAXVIAFKLHGEGIRGSKVLSITL
Ga0268332_105660713300028058PhyllosphereMPLFQQDRELPILDPVACVIAFKLHGEGIRGSQVLSIALPG
Ga0268314_104341613300028061PhyllosphereMTKELPVLDPVAXVIAFKLHGEGIRRSQALSIALQGXALDDSFL
Ga0268340_105549413300028064PhyllosphereVPLFQPDRELPILDPAACVIAFKLHGEGIRGSQALSIVQQ
Ga0268340_106311613300028064PhyllosphereVPLFQQDRELPILDPVAXVAFKLHGERIRGSQALSIA
Ga0268355_101863413300028139PhyllosphereVPLLQQDRELPILEPVAXVIAFKLHGEGIQGSKALSITLQGXAPVESSIY
Ga0268334_101420513300028140PhyllosphereVPLLQQDRELPILEPVAXVIAFKLHGEGIRGSKALSITLQGC
Ga0268348_100304413300028143PhyllosphereVPLFQRDQELPILDPVACVIAFKLHGEGIRGSQVLSIAL
Ga0268348_101838713300028143PhyllosphereVPQFQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQ
Ga0268308_102548613300028151PhyllosphereDRELPILDPVAXVIAFKLHGEDIRGYQALSIALQG
Ga0268336_101703313300028152PhyllosphereMPLFQRDRELPILDPVACVIAFKLHGEGIRGSQVLS
Ga0268320_101752413300028153PhyllosphereVPLFKRDRELPILDPVAXVIAFKLHGEGIRGSQAQSIALQG
Ga0268341_101546713300028154PhyllosphereRELPILDPVAXVIAFKMHGEGIRGAQALSIALQGXA
Ga0268341_102645613300028154PhyllosphereVPLLQRDRELPILEPVAXVIAFKLHGEGIQGSKALSITLQGXAPDES
Ga0268310_100621613300028262PhyllosphereMPLFQQDRELPILDPMARVIAFKLHGEGIRGYQTLSIALQG
Ga0268310_101071713300028262PhyllosphereMPLFERDRELPILDPVAIVIAFKRHGEGIRGSQALSITLQ
Ga0268310_101259323300028262PhyllospherePLFQRDRELAVLDPVAXVIAFKLNGEGIQGSQALSIALQGXAPD
Ga0268302_10474613300028464PhyllosphereVFQRDRELPILDPVARVIAFKLHGKGIRGSQALSIVLQG
Ga0268321_10854413300028466PhyllosphereVPLFQQDRELPILDPVAXVIAFKLHGEGIRGSQALSIAL
Ga0268323_101569413300028471PhyllosphereVPQFQWDRELPILDPVACVIAFKLHGEGIRGSQALSIA
Ga0268315_101883613300028472PhyllosphereQNRELPVLDPVAXVIAFRLHGEDIRGSQALSITLQG
Ga0268319_101708413300028473PhyllosphereVPLFQRDRELPIFYPVALIIAFKLHGEGIRGSQALSIALQG
Ga0268331_101495623300028474PhyllosphereQRDRELPILDPVACVIAFKLHGEGIRGSQALSIALQG
Ga0268311_102453313300028529PhyllosphereVLLFQQDRELPILDPVEXVIAYKLHKEGIRGSQALSI
Ga0214482_105983113300032468Switchgrass PhyllosphereVPLFQRDRELPILDLVAWVIAFKLHGEGIRGSQALSIALQG
Ga0314723_102915113300032823Switchgrass PhyllosphereVPLFQWDQELPILDPVAXVIAFKLHGEGIRGFQALSIALQGXAPDE
Ga0314727_105702313300032845Switchgrass PhyllosphereDRELPILDPVAGVIAFKLHAEGILGSQALSIALHG


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