Metagenome / Metatranscriptome Family F055345

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055345
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	46 residues
Representative Sequence	MRPEAKAQIYSVNENLPADQVARMGVLDQLERTRRKEKKSGEVAEK
Number of Associated Samples	83
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.70 %
% of genes near scaffold ends (potentially truncated)	73.19 %
% of genes from short scaffolds (< 2000 bps)	97.83 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (97.101 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (72.464 % of family members)
Environment Ontology (ENVO)	Unclassified (94.203 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (91.304 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.76% β-sheet: 0.00% Coil/Unstructured: 43.24%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF07893	DUF1668	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
All Organisms	root	All Organisms	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
cellular organisms	root	All Organisms → cellular organisms	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	2.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	1.45 %
Anthephorinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1.45 %
Digitaria	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	1.45 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.10 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1.45 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_102733684	Not Available	562	Open in IMG/M
3300005549\|Ga0070704_101993783	Not Available	539	Open in IMG/M
3300005617\|Ga0068859_102927286	Not Available	523	Open in IMG/M
3300005842\|Ga0068858_101545952	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	655	Open in IMG/M
3300005843\|Ga0068860_102789541	Not Available	506	Open in IMG/M
3300009972\|Ga0105137_103209	Not Available	721	Open in IMG/M
3300009973\|Ga0105136_109714	Not Available	583	Open in IMG/M
3300009975\|Ga0105129_107007	Not Available	698	Open in IMG/M
3300009976\|Ga0105128_120194	Not Available	518	Open in IMG/M
3300009980\|Ga0105135_105691	Not Available	835	Open in IMG/M
3300009989\|Ga0105131_117517	Not Available	681	Open in IMG/M
3300009992\|Ga0105120_1012869	Not Available	844	Open in IMG/M
3300009995\|Ga0105139_1098891	Not Available	560	Open in IMG/M
3300010396\|Ga0134126_12128440	Not Available	612	Open in IMG/M
3300010401\|Ga0134121_12333027	Not Available	574	Open in IMG/M
3300014968\|Ga0157379_11655032	Not Available	626	Open in IMG/M
3300015270\|Ga0182183_1063139	Not Available	575	Open in IMG/M
3300015273\|Ga0182102_1007272	Not Available	812	Open in IMG/M
3300015278\|Ga0182099_1008915	Not Available	884	Open in IMG/M
3300015280\|Ga0182100_1010083	Not Available	1028	Open in IMG/M
3300015280\|Ga0182100_1052646	Not Available	629	Open in IMG/M
3300015284\|Ga0182101_1006741	Not Available	1144	Open in IMG/M
3300015284\|Ga0182101_1053158	Not Available	626	Open in IMG/M
3300015284\|Ga0182101_1054261	Not Available	622	Open in IMG/M
3300015290\|Ga0182105_1072526	Not Available	581	Open in IMG/M
3300015293\|Ga0182103_1063509	Not Available	593	Open in IMG/M
3300015297\|Ga0182104_1011687	Not Available	1063	Open in IMG/M
3300015306\|Ga0182180_1062032	Not Available	586	Open in IMG/M
3300015309\|Ga0182098_1018595	Not Available	942	Open in IMG/M
3300015309\|Ga0182098_1036806	Not Available	768	Open in IMG/M
3300015309\|Ga0182098_1045002	Not Available	720	Open in IMG/M
3300015309\|Ga0182098_1087603	Not Available	577	Open in IMG/M
3300015310\|Ga0182162_1017548	Not Available	986	Open in IMG/M
3300015310\|Ga0182162_1035586	Not Available	794	Open in IMG/M
3300015311\|Ga0182182_1051719	Not Available	683	Open in IMG/M
3300015311\|Ga0182182_1091704	Not Available	559	Open in IMG/M
3300015313\|Ga0182164_1071256	Not Available	647	Open in IMG/M
3300015316\|Ga0182121_1075343	Not Available	657	Open in IMG/M
3300015316\|Ga0182121_1115327	Not Available	555	Open in IMG/M
3300015316\|Ga0182121_1124918	Not Available	537	Open in IMG/M
3300015317\|Ga0182136_1007734	Not Available	1303	Open in IMG/M
3300015317\|Ga0182136_1076000	Not Available	638	Open in IMG/M
3300015317\|Ga0182136_1086685	Not Available	608	Open in IMG/M
3300015318\|Ga0182181_1034040	Not Available	762	Open in IMG/M
3300015318\|Ga0182181_1036797	Not Available	743	Open in IMG/M
3300015319\|Ga0182130_1026180	Not Available	885	Open in IMG/M
3300015319\|Ga0182130_1102398	Not Available	562	Open in IMG/M
3300015319\|Ga0182130_1121389	Not Available	527	Open in IMG/M
3300015324\|Ga0182134_1111068	Not Available	564	Open in IMG/M
3300015324\|Ga0182134_1140969	Not Available	513	Open in IMG/M
3300015324\|Ga0182134_1144685	Not Available	507	Open in IMG/M
3300015325\|Ga0182148_1064550	Not Available	682	Open in IMG/M
3300015326\|Ga0182166_1064281	Not Available	681	Open in IMG/M
3300015327\|Ga0182114_1096124	Not Available	624	Open in IMG/M
3300015327\|Ga0182114_1133736	Not Available	546	Open in IMG/M
3300015330\|Ga0182152_1133408	Not Available	534	Open in IMG/M
3300015332\|Ga0182117_1030665	Not Available	977	Open in IMG/M
3300015332\|Ga0182117_1118408	Not Available	588	Open in IMG/M
3300015335\|Ga0182116_1025925	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	1056	Open in IMG/M
3300015335\|Ga0182116_1054545	Not Available	819	Open in IMG/M
3300015335\|Ga0182116_1127527	Not Available	585	Open in IMG/M
3300015335\|Ga0182116_1135042	Not Available	571	Open in IMG/M
3300015336\|Ga0182150_1061501	Not Available	740	Open in IMG/M
3300015336\|Ga0182150_1070848	Not Available	703	Open in IMG/M
3300015336\|Ga0182150_1153211	Not Available	520	Open in IMG/M
3300015337\|Ga0182151_1068866	Not Available	710	Open in IMG/M
3300015337\|Ga0182151_1082198	Not Available	666	Open in IMG/M
3300015337\|Ga0182151_1133527	Not Available	551	Open in IMG/M
3300015337\|Ga0182151_1156087	Not Available	516	Open in IMG/M
3300015338\|Ga0182137_1029524	Not Available	1011	Open in IMG/M
3300015338\|Ga0182137_1031220	Not Available	992	Open in IMG/M
3300015338\|Ga0182137_1107193	Not Available	629	Open in IMG/M
3300015338\|Ga0182137_1133299	Not Available	572	Open in IMG/M
3300015339\|Ga0182149_1113847	Not Available	601	Open in IMG/M
3300015339\|Ga0182149_1156053	Not Available	526	Open in IMG/M
3300015348\|Ga0182115_1024338	Not Available	1588	Open in IMG/M
3300015348\|Ga0182115_1075320	Not Available	1032	Open in IMG/M
3300015349\|Ga0182185_1037473	Not Available	1220	Open in IMG/M
3300015349\|Ga0182185_1225596	Not Available	569	Open in IMG/M
3300015350\|Ga0182163_1066782	Not Available	1048	Open in IMG/M
3300015350\|Ga0182163_1098895	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	883	Open in IMG/M
3300015350\|Ga0182163_1269783	Not Available	533	Open in IMG/M
3300015350\|Ga0182163_1288446	Not Available	514	Open in IMG/M
3300015352\|Ga0182169_1191605	Not Available	668	Open in IMG/M
3300015352\|Ga0182169_1200137	Not Available	653	Open in IMG/M
3300015353\|Ga0182179_1130999	Not Available	771	Open in IMG/M
3300015353\|Ga0182179_1263348	Not Available	557	Open in IMG/M
3300015353\|Ga0182179_1272378	Not Available	548	Open in IMG/M
3300015353\|Ga0182179_1286710	Not Available	534	Open in IMG/M
3300015354\|Ga0182167_1204012	Not Available	723	Open in IMG/M
3300015354\|Ga0182167_1281787	Not Available	593	Open in IMG/M
3300017408\|Ga0182197_1106113	Not Available	577	Open in IMG/M
3300017414\|Ga0182195_1083653	Not Available	739	Open in IMG/M
3300017421\|Ga0182213_1213175	Not Available	551	Open in IMG/M
3300017422\|Ga0182201_1037327	Not Available	792	Open in IMG/M
3300017422\|Ga0182201_1097642	Not Available	578	Open in IMG/M
3300017432\|Ga0182196_1100129	Not Available	588	Open in IMG/M
3300017435\|Ga0182194_1046679	Not Available	782	Open in IMG/M
3300017435\|Ga0182194_1058994	Not Available	718	Open in IMG/M
3300017439\|Ga0182200_1089021	Not Available	625	Open in IMG/M
3300017440\|Ga0182214_1147218	Not Available	522	Open in IMG/M
3300017445\|Ga0182198_1020459	Not Available	1136	Open in IMG/M
3300017445\|Ga0182198_1123992	Not Available	610	Open in IMG/M
3300017445\|Ga0182198_1133005	Not Available	594	Open in IMG/M
3300017447\|Ga0182215_1158754	Not Available	524	Open in IMG/M
3300017693\|Ga0182216_1048160	Not Available	907	Open in IMG/M
3300017693\|Ga0182216_1048529	Not Available	905	Open in IMG/M
3300017693\|Ga0182216_1169899	Not Available	563	Open in IMG/M
3300017693\|Ga0182216_1196511	Not Available	530	Open in IMG/M
3300017694\|Ga0182211_1169851	Not Available	521	Open in IMG/M
3300026088\|Ga0207641_12099228	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	566	Open in IMG/M
3300028051\|Ga0268344_1004563	Not Available	845	Open in IMG/M
3300028051\|Ga0268344_1014259	Not Available	608	Open in IMG/M
3300028054\|Ga0268306_1025322	Not Available	561	Open in IMG/M
3300028056\|Ga0268330_1057461	Not Available	519	Open in IMG/M
3300028058\|Ga0268332_1034120	Not Available	682	Open in IMG/M
3300028058\|Ga0268332_1057432	Not Available	568	Open in IMG/M
3300028062\|Ga0268342_1036870	Not Available	539	Open in IMG/M
3300028064\|Ga0268340_1025675	Not Available	771	Open in IMG/M
3300028140\|Ga0268334_1005088	Not Available	778	Open in IMG/M
3300028141\|Ga0268326_1002303	Not Available	849	Open in IMG/M
3300028142\|Ga0268347_1024367	Not Available	564	Open in IMG/M
3300028144\|Ga0268345_1019463	Not Available	573	Open in IMG/M
3300028151\|Ga0268308_1009557	Not Available	755	Open in IMG/M
3300028248\|Ga0268312_1007572	Not Available	821	Open in IMG/M
3300028248\|Ga0268312_1019581	Not Available	624	Open in IMG/M
3300028251\|Ga0268324_1008031	Not Available	718	Open in IMG/M
3300028470\|Ga0268307_1022777	Not Available	518	Open in IMG/M
3300028471\|Ga0268323_1016633	Not Available	549	Open in IMG/M
3300028523\|Ga0268313_1014052	Not Available	563	Open in IMG/M
3300028529\|Ga0268311_1010943	Not Available	687	Open in IMG/M
3300028529\|Ga0268311_1017414	Not Available	597	Open in IMG/M
3300032589\|Ga0214500_1210067	Not Available	549	Open in IMG/M
3300032790\|Ga0314731_1085280	Not Available	507	Open in IMG/M
3300032843\|Ga0314736_1044217	Not Available	574	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	97.10%
Environmental	Environmental	2.90%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	97.10%
Terrestrial	Environmental → Terrestrial	2.90%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	87.68%
Unclassified	Host-Associated → Plants → Unclassified	5.80%
Soil	Environmental → Terrestrial → Soil	2.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	87.68%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	5.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.17%
Loam	Environmental → Terrestrial → Soil → Loam	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	87.68%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	5.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	72.46%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	15.22%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	5.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300009972	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG	Host-Associated	Open in IMG/M
3300009973	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG	Host-Associated	Open in IMG/M
3300009975	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG	Host-Associated	Open in IMG/M
3300009976	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG	Host-Associated	Open in IMG/M
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300009989	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG	Host-Associated	Open in IMG/M
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015273	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015278	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015280	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015293	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015313	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015325	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015339	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017408	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017435	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017445	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028051	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028054	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1	Host-Associated	Open in IMG/M
3300028056	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028064	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028140	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028141	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028142	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028144	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028151	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028248	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028251	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1	Host-Associated	Open in IMG/M
3300028470	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_15MAY2017_LD1	Host-Associated	Open in IMG/M
3300028471	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028523	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028529	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300032589	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032790	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032843	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1027336841	3300004114	Soil	MRPEAKAQIYSVNEDLPANQVARMGALDQLERTRGKEKAGEAADEKVNCK
Ga0070704_1019937831	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRPEAKAQIYSINENLLANQVARMDVLDHLERARRNKKDGEAADEKVNCK
Ga0068859_1029272861	3300005617	Switchgrass Rhizosphere	MRPEAKAQIYSVNENLPADQVARM*GVLDQLERTRR
Ga0068858_1015459522	3300005842	Switchgrass Rhizosphere	RPEAKAQIYSVNENLPANQVARMDVLDQLERTRKKKKDGEAADEKVNCK
Ga0068860_1027895411	3300005843	Switchgrass Rhizosphere	MRPEAKAQIYSVNENLPADQVARM*CVLDQLERTRRKEKKSGE
Ga0105137_1032091	3300009972	Switchgrass Associated	MRSEAKAQIYSVNENLPADQVARMGVLDQLERTRRKEKKSGEVAEKKIAGKR
Ga0105136_1097141	3300009973	Switchgrass Associated	MRPEAKAQIYSVNENLPADQVARMGVLDQLERTRRKEKKSGEAAEK
Ga0105129_1070071	3300009975	Switchgrass Associated	MRPKAKAQIYSVNENLPADQIARMGVLDQLERTRRKEKKSGEVAEK
Ga0105128_1201941	3300009976	Switchgrass Associated	MRPEANAQIYSVNENLPADQVAQMDVLDQLERARRKEKKSGEVAEK
Ga0105135_1056911	3300009980	Switchgrass Associated	MHPEAKTQIYSVNEDLPANQVARMRGVLDQLERTRIKRKKDGEVADGKVICM*
Ga0105131_1175171	3300009989	Switchgrass Associated	MRQEAKAQIYSVNKNLPANQVARM*DVLDQLERARKKKKDGEAVDEKVNCK
Ga0105120_10128691	3300009992	Switchgrass Associated	MRPEAKAQIYSVNENLPADQVARMGVLDQLERTRRKEKKSGEVAEK
Ga0105139_10988911	3300009995	Switchgrass Associated	MRPEAKAQIYSINEDLPANQVGRMQGVLDQLERTHIKEKRMAKSSMEK*
Ga0134126_121284401	3300010396	Terrestrial Soil	MRTEAKAQIYSVNKNLPANQVARM*DVLDQLERTHRKEKGMAKSPT
Ga0134121_123330272	3300010401	Terrestrial Soil	MLPEAKAQIYSVNKNLPADQVARM*GVIDQLERTRRK
Ga0157379_116550321	3300014968	Switchgrass Rhizosphere	MRPETKAQIYSVNENLPANQVALM*GVLDQLERTRGK
Ga0182183_10631391	3300015270	Switchgrass Phyllosphere	MHPEAKAQIYSINEDLPANQVARI*GVLDRLERTRKKKKKRGGEV
Ga0182102_10072721	3300015273	Switchgrass Phyllosphere	MRPEAKAQIYSVDENLPADQVARMCILDQLERTRRKEKKSGEVAEK
Ga0182099_10089151	3300015278	Switchgrass Phyllosphere	MRPEAKAQIFSVNENSTANQVARL*GVLDQLERTREKKKKMA
Ga0182100_10100831	3300015280	Switchgrass Phyllosphere	AQIYSVNENLPADQVARMCILDQLERTRRKEKKSGEVTEK
Ga0182100_10526461	3300015280	Switchgrass Phyllosphere	MCPEAKAQIYSVNENLPADQVARM*DILDQLERTRRKEKKSCEV
Ga0182101_10067411	3300015284	Switchgrass Phyllosphere	MHPEAKAQIYSVNKNLPADQVARMGVLDQLERTRRKEKKSGEVAEK
Ga0182101_10531581	3300015284	Switchgrass Phyllosphere	IDLNEATAMRPEAKAQIYSVNENLPVDQVSRMCVFDQLERTRRKEKKSGEVVEK*
Ga0182101_10542611	3300015284	Switchgrass Phyllosphere	MRLEGKAQIYSVNEDLPANHVARMLGILDRLERTREKENGEAADGKK*
Ga0182105_10725261	3300015290	Switchgrass Phyllosphere	MRPEAKAQIYSLNKDLPANQVAQM*GVLDQLERTRRKEKGW
Ga0182103_10635091	3300015293	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPANQVARM*GVLDLLERTRGKKKKDGDVA
Ga0182104_10116871	3300015297	Switchgrass Phyllosphere	MRPEAKAQIYLVNENLLADQLARMGVLDQLEKTRRKEKKSGEVAEK
Ga0182180_10620322	3300015306	Switchgrass Phyllosphere	MRPEAKTQIYLVDENLPANQVARM*GILDQLERTHKEKEDGEVPDEKLKCK
Ga0182098_10185952	3300015309	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPADQVARMDVLDQLEKTRRKEKKSGEVAEK
Ga0182098_10368061	3300015309	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPANQVAQM*GVLDWLERTRRKKKMAMP
Ga0182098_10450021	3300015309	Switchgrass Phyllosphere	MRPEGKAQIYLVDENLPANQVARMGVLDQLERTRPKEKKSGEVAEK
Ga0182098_10876032	3300015309	Switchgrass Phyllosphere	MRPEAKAQIYLVNEILPVDQVARM*GVLNQLERTR
Ga0182162_10175481	3300015310	Switchgrass Phyllosphere	MRPEAKTQIYSVNENLPADQVARMDVIDQLKRTRRKAKKSGEVAEK
Ga0182162_10355861	3300015310	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPANQVARM*GILDQLKRARRKKKDGEVADEKVNC
Ga0182182_10517192	3300015311	Switchgrass Phyllosphere	KFIDLNEATAMRPEAKAQIYSVNENLPADQIARMCVLDQLERTRRKEKKSGEVAEK*
Ga0182182_10917041	3300015311	Switchgrass Phyllosphere	MRPEDKAQIYSVNKNLPANQIARMLDVLNQLERARRKKKYGEPADEKVNCK
Ga0182164_10712561	3300015313	Switchgrass Phyllosphere	KAQIYLVNENLPADQVARMGVLDQLERTHRKEKKSGEVAEK
Ga0182121_10753431	3300015316	Switchgrass Phyllosphere	MRPEAKAQIYTVNKNLPADRVARMGVLDQLERTRRKEKKSGEVAEK
Ga0182121_11153271	3300015316	Switchgrass Phyllosphere	MRPEAKSQIYSVNENSPEDQAAQM*GVLDQLERTRRKG
Ga0182121_11249182	3300015316	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPADQVARM*DVLDQLERARRKEKKSGE
Ga0182136_10077341	3300015317	Switchgrass Phyllosphere	MRPEAKAHIYSVNENLPENQVARMGILDQLERTREKEKDGEAVDGKVNCK
Ga0182136_10760002	3300015317	Switchgrass Phyllosphere	MRLEAKAQIYSVNENLPADQVAQMLGIHDQLERTRGKRK*
Ga0182136_10866852	3300015317	Switchgrass Phyllosphere	MRPDAKAQIYSVNENLLADQVARMCVRDQLERTRRKEKKSDKVAEK
Ga0182181_10340401	3300015318	Switchgrass Phyllosphere	MRLEAKAQIYSVNENLPADQVARMGVLDQLERTRKEKKSGEVAEK*
Ga0182181_10367972	3300015318	Switchgrass Phyllosphere	EAKAQIYSVNENLPADQVARMCVLDQLERTRRKEKKSGEVSEK
Ga0182130_10261801	3300015319	Switchgrass Phyllosphere	FIDLNEAIAMRPEAKAQIYLVNENLLADQLARMGVLDQLERTRRKEKKSGEVTEK*
Ga0182130_11023981	3300015319	Switchgrass Phyllosphere	MCPEAKAQVYSVNENLPANQVARM*DVIDQLERTRRKEKR
Ga0182130_11213891	3300015319	Switchgrass Phyllosphere	MLPEAKAQIYSVNENLPANQVARM*GVLDQLERTRE
Ga0182134_11110681	3300015324	Switchgrass Phyllosphere	RSEAKAQIYSVNEKLPANQLAQMDVLDRLERAREKKKDGEAADEKVNCK
Ga0182134_11409691	3300015324	Switchgrass Phyllosphere	MHLEAKAQIYSVNEDLPANQVAMGVLDQLERTREKEKVGEVADRKVN
Ga0182134_11446851	3300015324	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPANQVARM*DVFDQLERTRRK
Ga0182148_10645502	3300015325	Switchgrass Phyllosphere	MKEATTIRPEAKAQIYSVNENLAADQVARM*GVLDQLERTRRKE
Ga0182166_10642811	3300015326	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPANQVARMGVLDQLERTREKAKDGEAADEKSKLQVE
Ga0182114_10961241	3300015327	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPADRVARM*GVLDQLERTRRKAI
Ga0182114_11337361	3300015327	Switchgrass Phyllosphere	MRPETKAQIYSVNENLPANQVALM*GVLDQLERTRGKEK
Ga0182152_11334081	3300015330	Switchgrass Phyllosphere	MRLEAKAHIYSVNKNLPADQVARM*GVLDQLERTRRKEKKS
Ga0182117_10306651	3300015332	Switchgrass Phyllosphere	RPESKAQIYSVNEILPADEVARMGVLDQLERTRRKEKKSGEVAEK
Ga0182117_11184081	3300015332	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPADQVARM*GVLDQLERTRRKEKKSGKVAEK
Ga0182116_10259251	3300015335	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPANQVARM*DVQDQLERTRRKKKDGEAAD
Ga0182116_10545451	3300015335	Switchgrass Phyllosphere	MMRPEAKAQIYSVNENLPADGVARMDFLDQLERTRRKEKKSGEVAEK
Ga0182116_11275271	3300015335	Switchgrass Phyllosphere	MRLEAKAQIYSINENLPADQVARMGVLDQLERTLRKEKKSGEVAEK
Ga0182116_11350421	3300015335	Switchgrass Phyllosphere	RPEAKAQIHSVNEHLPANQVARMGVLDRLERTREKENGEAADGKK
Ga0182150_10615011	3300015336	Switchgrass Phyllosphere	IDLNEATAMRPEAKAQIYSVNENLPADQVARMCVLDQLERTHRKEKKSGEVAEK*
Ga0182150_10708481	3300015336	Switchgrass Phyllosphere	LNEVTAMRPEAKTQIYSVNENLRVDQVARMGVLDQLERTLRKEKKSGEVAEK
Ga0182150_11532111	3300015336	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPADQVARM*GVLDQLERTR
Ga0182151_10688661	3300015337	Switchgrass Phyllosphere	PEAKAQIYSVNENLPANQVARMGVHAKKEKHGEVADRKVNCK
Ga0182151_10821981	3300015337	Switchgrass Phyllosphere	MHPEAKTQIYLVNENLPANQVAMGVLDQLERTREKEKDG
Ga0182151_11335272	3300015337	Switchgrass Phyllosphere	RPEAKAQIYSVNKNFPVNQVARMDVLDQLEIARGKKKDGEAADEKVNCK
Ga0182151_11560871	3300015337	Switchgrass Phyllosphere	MPPEAKTQIYLVNEDLPANQVARM*GVLDQLERTREKKKDGEV
Ga0182137_10295241	3300015338	Switchgrass Phyllosphere	SVNENLPADQVAMDVLDQLERTRRKEKTSDEVVEK*
Ga0182137_10312204	3300015338	Switchgrass Phyllosphere	AKAQIYSVNENLPADQVARMGVLDQLERTRRKEKKSGEIAEK
Ga0182137_11071931	3300015338	Switchgrass Phyllosphere	MHPEAKAQIYSVDENLPANQVARM*GVLDQLERTRIKLYYYYS
Ga0182137_11332991	3300015338	Switchgrass Phyllosphere	CPEAKAQIYSVNENLPANQVTRMGVLDQLERTREKEKDGEAADGKVNCEKSKVL
Ga0182149_11138471	3300015339	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPANQVARMGVLDQLERTREKEKDGEAADEKSKLQVE
Ga0182149_11560531	3300015339	Switchgrass Phyllosphere	PEAKAQIYSVNENLPANQVARMGVLDQLKRTREKEKMGEAADEKVNCT
Ga0182115_10243381	3300015348	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPVDHVARMGVLDQLERARRKEKKSDEVAEK
Ga0182115_10753201	3300015348	Switchgrass Phyllosphere	FIDLNEATAMRPEAEAQIYSVNENLPADQVARMCVLDQLERTCRKEKKSGEVAEK*
Ga0182185_10374732	3300015349	Switchgrass Phyllosphere	FIDLNEATAMRPEAKAQIYSVNENLPADQVARMDVLDQLERARRKEKKSGEVAEK*
Ga0182185_12255961	3300015349	Switchgrass Phyllosphere	MRPEVKAQIYSVNENLPANQVARM*DVLDQLERTRRKKKDG
Ga0182185_12837521	3300015349	Switchgrass Phyllosphere	LDNFIDLNEATAMGPEAKAQIYSVNEKLPADKVARMCVLDQLERTHRKEKKSGEVTEK
Ga0182163_10667823	3300015350	Switchgrass Phyllosphere	FIDLNEASAMRPEAKAQIYLVNKNLPADQVARTGILDQLERTRRKEKKSGEVAEK*
Ga0182163_10988951	3300015350	Switchgrass Phyllosphere	SVNENLPADQVARMCVLDQLERTRRKEKKSGEVAEK
Ga0182163_12697831	3300015350	Switchgrass Phyllosphere	MRPVAKAPIYSVNENLPADQVARM*GVLDQLERTR
Ga0182163_12884461	3300015350	Switchgrass Phyllosphere	MRPEAKAQIYLVNENLPANQVARM*GVLDQLERTRGKEKDGEV
Ga0182169_11916051	3300015352	Switchgrass Phyllosphere	CIDLNEATVMRPEAKAQIYLVNENLPADQVARMCILDQLERTHRKEKKSGEVAEK*
Ga0182169_12001371	3300015352	Switchgrass Phyllosphere	MRPETKAQIYSVNENLPANQVALM*GVLDQLERTRGKEKDG
Ga0182179_11309991	3300015353	Switchgrass Phyllosphere	AMRLEAKAQIYSVNENLPADQIAQMLGIHDQLERTRGKRK*
Ga0182179_12633481	3300015353	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLKANQVAGM*GILDRLERTRRKKKDGEAA
Ga0182179_12723781	3300015353	Switchgrass Phyllosphere	MRPETKAQIYSVNENLPANQVALM*GVLDQLERTRGKEKRMAKSP
Ga0182179_12867101	3300015353	Switchgrass Phyllosphere	MRPETKAQIYSVNENLPANQVARM*GVLDQLERTREKK
Ga0182167_12040121	3300015354	Switchgrass Phyllosphere	AQIYSVNEKLPADKVARMCVLDQLERTHRKEKKSGEVTEK
Ga0182167_12817871	3300015354	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLKANQVARM*GILDRLERTRRKKKDGEAA
Ga0182197_11061132	3300017408	Switchgrass Phyllosphere	EAKAQIYSVNEDLPANQVSRMQGVLDQLERTHIKEKRMAKSSMEK
Ga0182195_10836531	3300017414	Switchgrass Phyllosphere	SVNKNLPANQVAQMXYVLDRLKRAREKKKDGEVADKKVNCE
Ga0182213_12131751	3300017421	Switchgrass Phyllosphere	RPEAKAQIYSVNKNLPANQVARMXDILDHLERTRRKKKDGEAADGKINYK
Ga0182201_10373271	3300017422	Switchgrass Phyllosphere	MHPEAKVQIYSVNEKLPADQVARMXCVLDQLERTRRKEKKSGEVAEK
Ga0182201_10976421	3300017422	Switchgrass Phyllosphere	MRPEVKAQIYSVNEYLPADQVARMXCILDQLERTRRK
Ga0182196_11001291	3300017432	Switchgrass Phyllosphere	MRPETKAQIYSVNENLPANQVALMXGVLDQLERTRGKEKDGDATDGKVNCEKSKVLLV
Ga0182196_11489581	3300017432	Switchgrass Phyllosphere	LDNFXIDLNEATAMRLEAKAQIYSVNENLPADQVARMXCVLDQLERTHRKEKKSGEVAER
Ga0182194_10466792	3300017435	Switchgrass Phyllosphere	EATAMRPEAKAQIYSVNESLPANQVARMXDILDLLERAHEKKKDGEIADKKVNCE
Ga0182194_10589941	3300017435	Switchgrass Phyllosphere	MRPGAKAQIYLVNKNLPADQVARTXGILDQLERTRRKEKKSGEVVEK
Ga0182200_10890211	3300017439	Switchgrass Phyllosphere	MRPEAKAQIYSVNKNLPVNQVARMXDVLDQLEIARGKKKDGE
Ga0182214_11472181	3300017440	Switchgrass Phyllosphere	MRPVAKAQIYSVNENLLADQVTRMXGVLDQLERTRRKEKKSG
Ga0182198_10204592	3300017445	Switchgrass Phyllosphere	MRPEAKAKIYSVNENLLVDQVARMXGILDQLERTRR
Ga0182198_11239921	3300017445	Switchgrass Phyllosphere	MRPKAKAQIYSVNEDLLANQVARMXGVLDQLERTRRKKKKDSEVADEKVNCK
Ga0182198_11330051	3300017445	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPADQVARMXGILDQLERTRRKEKKSGEVAEK
Ga0182215_11587541	3300017447	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPADQVARMXGVLDQLERTRR
Ga0182216_10481601	3300017693	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLLVDHVARMXGVLDQLERARRKEKKSDEVAEK
Ga0182216_10485291	3300017693	Switchgrass Phyllosphere	MRPDAKAQIYSINENLLADQVARMXGILDQLERTRRKEKKSGEVAEK
Ga0182216_11698992	3300017693	Switchgrass Phyllosphere	MRPEAKAHIYSVDENLPADQVARMXGILDQLERTRRKEKKSGEVAEK
Ga0182216_11965111	3300017693	Switchgrass Phyllosphere	MRPKAKAEIYSVNENLPANQVARMXDVLDQLERTRRKKKDG
Ga0182216_12126591	3300017693	Switchgrass Phyllosphere	FDNFXIDLNKSTAMRPEAKAQIYSVNENLPADQVARMXGVLDQLERTRRKEKKSGEVAEK
Ga0182211_11698511	3300017694	Switchgrass Phyllosphere	MRPEAKAQIYLVNEDLPANQVGRMQGVLDQLERTHIKEKRM
Ga0207641_120992281	3300026088	Switchgrass Rhizosphere	DLNEATAMRPEGKAQIYSVNENLPANQVARMXDILDQLERTRRKKKDGDVADEKVNCK
Ga0268344_10045632	3300028051	Phyllosphere	NEATAMCLEAKAQIYSVNENLPADQVARMXCVLDQLERTRRKEKKSGEVAEK
Ga0268344_10142591	3300028051	Phyllosphere	MRPEAKAHIYSVNVNLPAGQVTRMXGVLDQLERTRRKKKMAKS
Ga0268306_10253222	3300028054	Phyllosphere	MHPEAKAHIYSVNEDLLENQVARMXGVLDHLERTREKEKDGEVADXKVNCK
Ga0268330_10574611	3300028056	Phyllosphere	KAQIYSVNENLPADQVARMXGVLDQLERTRRKEKKSGEVVEK
Ga0268332_10341201	3300028058	Phyllosphere	MCPEAKAQIYSVNENLPADQVARMXGILDQLERTRRKEKKSGEVAEK
Ga0268332_10574321	3300028058	Phyllosphere	MCPEAKAQIYSVNEDLPANQVAQMXGVLDQLERTRRKKKKG
Ga0268342_10368701	3300028062	Phyllosphere	MRLEGKAQIYSVNEDLPANQVARIXGILNQLERNREKE
Ga0268340_10256751	3300028064	Phyllosphere	MRPEAKAQIYSVNENLLADQVARMXGVLDQLERTR
Ga0268334_10050881	3300028140	Phyllosphere	MRPEAKAQIYSADENLPVDHVARMXGILDQLERTHRK
Ga0268326_10023031	3300028141	Phyllosphere	DLNEATAMRPKAKSQIYSVNENLPVDQVARMGCVLDQLERTRRKKSGEVVEK
Ga0268347_10243671	3300028142	Phyllosphere	MRPEVKAQIYSINEDLPANQVAQMXGVLDQLERTRGKEKDGEVA
Ga0268345_10194631	3300028144	Phyllosphere	AMRPEVKSQIYSVNENLPADQVARMXGVLDQLERTRRKEKKSGEVAEK
Ga0268308_10095572	3300028151	Phyllosphere	EATAMRPEAKAQIYSVNENLPADQVARMXCVLDQLERTRRKEKKSGEVAEK
Ga0268312_10075722	3300028248	Phyllosphere	MHPEAKAQIYSVNEDLPANQFARMXDVLDQLEKTHEKEKDGDAADEEVNCK
Ga0268312_10195812	3300028248	Phyllosphere	MRPEAKAQIYLVNENLLADQLARMXGVLDQLEKTRRKEKKSGEVAEK
Ga0268324_10080311	3300028251	Phyllosphere	EATAMRPEAKAQIYSVNENLPADQVARMXDVLDQLERARRKEKKSGEVAEK
Ga0268307_10227771	3300028470	Phyllosphere	MRPEVKVQIYSVNENLPADQVARMXGVLDQLERTRRKEKKSG
Ga0268323_10166331	3300028471	Phyllosphere	MRLEAKAQIYSVNENLPANQVARMXGVLDRLERTRRKKKMAKPP
Ga0268313_10140521	3300028523	Phyllosphere	MRPKAKSQIYSVNEDLPENQVAXMXGILDQLERTRGKEKKDGEVADE
Ga0268311_10109431	3300028529	Phyllosphere	EAKAQIYSVNENLPVDQVARMXCVIDQLERTRRKEKKSGEVAEK
Ga0268311_10174141	3300028529	Phyllosphere	MRPETKAQIYSVNENLPANQVALMXGVLDQLERTRGKEKDGDATDG
Ga0214500_12100671	3300032589	Switchgrass Phyllosphere	PEAKAQIYSVNKNLPADQVARMXGVLDQLERTRRKEKKSGEVAEK
Ga0314731_10852801	3300032790	Switchgrass Phyllosphere	XIDLNEATAMRPEAKAQIYSVNENSPANQVARMXGVLDQLERTRRKRKKGGEVADKKVNY
Ga0314736_10442172	3300032843	Switchgrass Phyllosphere	MRPEAKAQIYSVNENLPANQVAXMXGVLDQLERTRGKEKDGEAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055345

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences