Metagenome / Metatranscriptome Family F055427

Basic Information
Family ID	F055427
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	50 residues
Representative Sequence	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPRED
Number of Associated Samples	124
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.86 %
% of genes near scaffold ends (potentially truncated)	98.55 %
% of genes from short scaffolds (< 2000 bps)	96.38 %
Associated GOLD sequencing projects	121
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (84.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.812 % of family members)
Environment Ontology (ENVO)	Unclassified (32.609 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.725 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 0.00% Coil/Unstructured: 52.63%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00557	Peptidase_M24	5.07
PF01196	Ribosomal_L17	1.45
PF00411	Ribosomal_S11	0.72
PF00248	Aldo_ket_red	0.72
PF03118	RNA_pol_A_CTD	0.72
PF07690	MFS_1	0.72
PF04185	Phosphoesterase	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0203	Ribosomal protein L17	Translation, ribosomal structure and biogenesis [J]	1.45
COG0100	Ribosomal protein S11	Translation, ribosomal structure and biogenesis [J]	0.72
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.72
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.16 %
Unclassified	root	N/A	15.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	64.49 %
Unclassified	root	N/A	15.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.72 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	60.87 %
Unclassified	root	N/A	15.94 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	2.17 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.72 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	60.87 %
Unclassified	root	N/A	15.94 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1.45 %
Idiomarinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae	0.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	60.14 %
Unclassified	root	N/A	15.94 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1.45 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.72 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.72 %
Pseudidiomarina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina	0.72 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	60.14 %
Unclassified	root	N/A	15.94 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	1.45 %
Pseudidiomarina aestuarii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina → Pseudidiomarina aestuarii	0.72 %
Granulicella pectinivorans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella pectinivorans	0.72 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_103235076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	610	Open in IMG/M
3300005537\|Ga0070730_10524024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	760	Open in IMG/M
3300005602\|Ga0070762_10436029	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300005602\|Ga0070762_11235234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	517	Open in IMG/M
3300006102\|Ga0075015_100258926	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300007819\|Ga0104322_141347	All Organisms → cellular organisms → Bacteria → Proteobacteria	2522	Open in IMG/M
3300009500\|Ga0116229_10590424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	914	Open in IMG/M
3300009624\|Ga0116105_1251954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	503	Open in IMG/M
3300009645\|Ga0116106_1145395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	759	Open in IMG/M
3300009660\|Ga0105854_1181357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	692	Open in IMG/M
3300009709\|Ga0116227_10487226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	937	Open in IMG/M
3300009709\|Ga0116227_10507634	Not Available	916	Open in IMG/M
3300009709\|Ga0116227_10535493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	889	Open in IMG/M
3300009759\|Ga0116101_1030484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300009787\|Ga0116226_11667564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	586	Open in IMG/M
3300010159\|Ga0099796_10042055	Not Available	1550	Open in IMG/M
3300010199\|Ga0127508_1342648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	538	Open in IMG/M
3300010858\|Ga0126345_1051686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	533	Open in IMG/M
3300010867\|Ga0126347_1507401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	831	Open in IMG/M
3300011120\|Ga0150983_14365311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	512	Open in IMG/M
3300011269\|Ga0137392_10411681	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300012359\|Ga0137385_11108911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	651	Open in IMG/M
3300012925\|Ga0137419_10339520	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300012925\|Ga0137419_10512644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	953	Open in IMG/M
3300012929\|Ga0137404_11432677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	638	Open in IMG/M
3300012982\|Ga0168317_1036915	All Organisms → cellular organisms → Bacteria → Proteobacteria	1296	Open in IMG/M
3300014155\|Ga0181524_10427570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	573	Open in IMG/M
3300014159\|Ga0181530_10054550	All Organisms → cellular organisms → Bacteria → Proteobacteria	2589	Open in IMG/M
3300014165\|Ga0181523_10094237	Not Available	1803	Open in IMG/M
3300014169\|Ga0181531_10405723	All Organisms → cellular organisms → Bacteria → Proteobacteria	838	Open in IMG/M
3300014201\|Ga0181537_10227424	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300014501\|Ga0182024_11188034	All Organisms → cellular organisms → Bacteria → Proteobacteria	893	Open in IMG/M
3300014657\|Ga0181522_10883878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	551	Open in IMG/M
3300014968\|Ga0157379_11535278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	649	Open in IMG/M
3300016730\|Ga0181515_1158701	Not Available	522	Open in IMG/M
3300018037\|Ga0187883_10348777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	757	Open in IMG/M
3300018047\|Ga0187859_10309368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	856	Open in IMG/M
3300019164\|Ga0184582_129793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	544	Open in IMG/M
3300019188\|Ga0184599_113853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	522	Open in IMG/M
3300019194\|Ga0184586_143090	Not Available	605	Open in IMG/M
3300019268\|Ga0181514_1458420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	512	Open in IMG/M
3300019270\|Ga0181512_1268251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	535	Open in IMG/M
3300019270\|Ga0181512_1629842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	519	Open in IMG/M
3300019275\|Ga0187798_1720003	Not Available	515	Open in IMG/M
3300020060\|Ga0193717_1164174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	639	Open in IMG/M
3300020579\|Ga0210407_11172861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	579	Open in IMG/M
3300020580\|Ga0210403_10322277	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
3300021170\|Ga0210400_11556428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	523	Open in IMG/M
3300021180\|Ga0210396_11494862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	555	Open in IMG/M
3300021405\|Ga0210387_11810551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	514	Open in IMG/M
3300021474\|Ga0210390_10918645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	719	Open in IMG/M
3300021475\|Ga0210392_10296144	All Organisms → cellular organisms → Bacteria → Proteobacteria	1158	Open in IMG/M
3300021479\|Ga0210410_10329224	All Organisms → cellular organisms → Bacteria → Proteobacteria	1370	Open in IMG/M
3300021559\|Ga0210409_11263564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	614	Open in IMG/M
3300022510\|Ga0242652_1049143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	530	Open in IMG/M
3300022528\|Ga0242669_1116263	Not Available	533	Open in IMG/M
3300022528\|Ga0242669_1118756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	529	Open in IMG/M
3300022529\|Ga0242668_1140425	Not Available	524	Open in IMG/M
3300022531\|Ga0242660_1243642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	510	Open in IMG/M
3300022532\|Ga0242655_10225376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	583	Open in IMG/M
3300022533\|Ga0242662_10312161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	527	Open in IMG/M
3300022708\|Ga0242670_1068020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	538	Open in IMG/M
3300022709\|Ga0222756_1093913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	505	Open in IMG/M
3300022712\|Ga0242653_1102191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	526	Open in IMG/M
3300022718\|Ga0242675_1116437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	530	Open in IMG/M
3300022718\|Ga0242675_1132957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	508	Open in IMG/M
3300022726\|Ga0242654_10381088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	537	Open in IMG/M
3300022726\|Ga0242654_10382449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	536	Open in IMG/M
3300023547\|Ga0247554_105936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	523	Open in IMG/M
3300024271\|Ga0224564_1078012	Not Available	663	Open in IMG/M
3300024323\|Ga0247666_1016894	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300025916\|Ga0207663_10957942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	685	Open in IMG/M
3300026285\|Ga0209438_1072060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300026355\|Ga0257149_1040463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	665	Open in IMG/M
3300026489\|Ga0257160_1068100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	627	Open in IMG/M
3300027066\|Ga0208236_1012827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	589	Open in IMG/M
3300027067\|Ga0208602_1026623	Not Available	572	Open in IMG/M
3300027171\|Ga0207947_1008003	Not Available	708	Open in IMG/M
3300027370\|Ga0209010_1037281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	831	Open in IMG/M
3300027648\|Ga0209420_1136228	Not Available	679	Open in IMG/M
3300027663\|Ga0208990_1076005	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300027768\|Ga0209772_10140966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	754	Open in IMG/M
3300027795\|Ga0209139_10283282	Not Available	584	Open in IMG/M
3300027817\|Ga0209112_10119338	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella pectinivorans	866	Open in IMG/M
3300027853\|Ga0209274_10387014	Not Available	722	Open in IMG/M
3300027879\|Ga0209169_10516973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	626	Open in IMG/M
3300027908\|Ga0209006_11522807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	505	Open in IMG/M
3300027911\|Ga0209698_10340511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300028566\|Ga0302147_10121768	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300028779\|Ga0302266_10210465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	735	Open in IMG/M
3300028780\|Ga0302225_10607832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	506	Open in IMG/M
3300028801\|Ga0302226_10132809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1090	Open in IMG/M
3300028882\|Ga0302154_10583493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	527	Open in IMG/M
3300028906\|Ga0308309_10560382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina → Pseudidiomarina aestuarii	990	Open in IMG/M
3300029915\|Ga0311358_11142288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	522	Open in IMG/M
3300029943\|Ga0311340_10009497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	12591	Open in IMG/M
3300029999\|Ga0311339_11927492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	508	Open in IMG/M
3300030007\|Ga0311338_10248185	All Organisms → cellular organisms → Bacteria → Proteobacteria	2003	Open in IMG/M
3300030007\|Ga0311338_10675151	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300030020\|Ga0311344_10639012	Not Available	903	Open in IMG/M
3300030054\|Ga0302182_10387231	Not Available	586	Open in IMG/M
3300030225\|Ga0302196_10235005	Not Available	879	Open in IMG/M
3300030399\|Ga0311353_10228275	Not Available	1736	Open in IMG/M
3300030399\|Ga0311353_11040636	Not Available	683	Open in IMG/M
3300030520\|Ga0311372_10174180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3663	Open in IMG/M
3300030524\|Ga0311357_10207746	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300030526\|Ga0210267_1076601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	514	Open in IMG/M
3300030548\|Ga0210252_10683822	Not Available	514	Open in IMG/M
3300030548\|Ga0210252_10712196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	557	Open in IMG/M
3300030549\|Ga0210257_10378748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	522	Open in IMG/M
3300030596\|Ga0210278_1130215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	599	Open in IMG/M
3300030602\|Ga0210254_10135459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	519	Open in IMG/M
3300030603\|Ga0210253_10070281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	543	Open in IMG/M
3300030618\|Ga0311354_10899051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	826	Open in IMG/M
3300030624\|Ga0210251_10427922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	586	Open in IMG/M
3300030716\|Ga0307920_120565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	628	Open in IMG/M
3300030730\|Ga0307482_1282173	Not Available	530	Open in IMG/M
3300030741\|Ga0265459_14285219	Not Available	500	Open in IMG/M
3300030762\|Ga0265775_114618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	521	Open in IMG/M
3300030776\|Ga0075396_1005643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	501	Open in IMG/M
3300030886\|Ga0265772_106187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	548	Open in IMG/M
3300030886\|Ga0265772_106947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	526	Open in IMG/M
3300030950\|Ga0074034_11131943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	506	Open in IMG/M
3300030963\|Ga0265768_111653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	580	Open in IMG/M
3300031128\|Ga0170823_10852410	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
3300031128\|Ga0170823_14830519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	502	Open in IMG/M
3300031231\|Ga0170824_111746186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	552	Open in IMG/M
3300031258\|Ga0302318_10370715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	720	Open in IMG/M
3300031261\|Ga0302140_10854170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	643	Open in IMG/M
3300031446\|Ga0170820_12323530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	699	Open in IMG/M
3300031524\|Ga0302320_10749253	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300031524\|Ga0302320_11766485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	592	Open in IMG/M
3300031616\|Ga0307508_10663472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	649	Open in IMG/M
3300031715\|Ga0307476_10719062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	739	Open in IMG/M
3300031753\|Ga0307477_10154777	All Organisms → cellular organisms → Bacteria → Proteobacteria	1599	Open in IMG/M
3300031815\|Ga0316045_127909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	502	Open in IMG/M
3300031955\|Ga0316035_113571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	630	Open in IMG/M
3300032515\|Ga0348332_10014021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.20%
Host-Associated	Host-Associated	5.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.71%
Aquatic	Environmental → Aquatic	14.49%
Plants	Host-Associated → Plants	5.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.32%
Peat	Environmental → Terrestrial → Peat	15.94%
Freshwater	Environmental → Aquatic → Freshwater	13.04%
Peat Moss	Host-Associated → Plants → Peat Moss	4.35%
Sediment	Environmental → Aquatic → Sediment	1.45%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.72%
Geologic	Environmental → Terrestrial → Geologic	0.72%
Roots	Host-Associated → Plants → Roots	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.04%
Loam	Environmental → Terrestrial → Soil → Loam	10.87%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	4.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.45%
Clay	Environmental → Terrestrial → Soil → Clay	0.72%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.72%
Mine	Environmental → Terrestrial → Geologic → Mine	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.14%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.70%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.52%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	4.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.45%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.72%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.72%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.72%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.72%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.72%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300007819	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010199	Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum fallax MT (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019164	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019188	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023547	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027066	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes)	Environmental	Open in IMG/M
3300027067	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 (SPAdes)	Environmental	Open in IMG/M
3300027171	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030526	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE044SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030548	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030602	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030603	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR017SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030624	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR005SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030716	Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030762	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030886	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030950	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030963	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031815	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031955	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055427

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1032350762	3300004092	Bog Forest Soil	VASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLG
Ga0070730_105240241	3300005537	Surface Soil	LLVSIRDCRHSKKDRQWIQDVYPEYLDALADLNTGLFSVL
Ga0070762_104360293	3300005602	Soil	LLVSIRDCRHSKKDRQWIQEVYPEYLDALADLNTGLFSVLGASNPHQ
Ga0070762_112352342	3300005602	Soil	LLVSIRDVKHSKQDRRWIQGVYGEYIESLADLNTGLFSVIGANNPHEDEIFANWFSNDQS
Ga0075015_1002589263	3300006102	Watersheds	LLVSIRDVRRSKQDRQWIQSVYGEYLDSLADLNTGLFSVLSAGNPHQ
Ga0104322_1413471	3300007819	Permafrost Soil	LLVSIRDVRHSKQDRRWIQSVYGEYIESLADLNTGLFSVIGVNNPHADEIFANWFSNDQSHPLL
Ga0116229_105904243	3300009500	Host-Associated	VLTSIRDVKTSKKDRQWIQDVYSEYVEALADLNTGFFSVVSA
Ga0116105_12519541	3300009624	Peatland	LLVSIRDCRHSKKDRQWIQDVYPEYLDALADLNTGL
Ga0116106_11453952	3300009645	Peatland	LLVSIRDCRHSKKDRQWIQNVYAEYIDALADLNTGLFSVLGADNPREDEIFANWFA
Ga0105854_11813571	3300009660	Permafrost Soil	LPGFGEADSLLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGANNPHEDEIFANW
Ga0116227_104872263	3300009709	Host-Associated	VLTSIRDVKTSKKDRQWIQDVYSEYVEALADLNTGFFSVVSAESTQQ
Ga0116227_105076342	3300009709	Host-Associated	LEPGEAGSVLISIRDCRHSKKDRQWIQSVYGQYLESLSDLNTGLFSVLGADSAREQEIFANWFTN
Ga0116227_105354931	3300009709	Host-Associated	LLVSIRDCRHSKKDRQWIQDIYGEYLDALSDLNTGLFSVLGTDSPREQEIFANWFSNDQS
Ga0116101_10304841	3300009759	Peatland	LLVSIRDCRQSKKDRRWIQSVYGEYIESLADLNTGLFSVLGADNPREDEIFA
Ga0116226_116675642	3300009787	Host-Associated	LLVNIRDCRHSKKDRQWIQDVYGEYMDALSDLNTGLFSVLGADNPREDEIF
Ga0099796_100420551	3300010159	Vadose Zone Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPRED
Ga0127508_13426481	3300010199	Host-Associated	LLVSIRDCRHAKKDRQWIQDVYGEYLEALSDLNTGLFSVLGEHNPREDEIFAHW
Ga0126345_10516862	3300010858	Boreal Forest Soil	VSFQDQDEDSLLVSIRDVRHSKQDRRWIQSVYGEYIESLADLNTGLFSVIGANNPHEDEIFANWFS
Ga0126347_15074011	3300010867	Boreal Forest Soil	LLISIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADSPREDEIFA
Ga0150983_143653111	3300011120	Forest Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGAND
Ga0137392_104116812	3300011269	Vadose Zone Soil	LLISIRDCRHSKKDRLWIQSVYGEYIDSLADLNTGLYSVIGANNPREDEIFANWFSNDQSHPLVILKG
Ga0137385_111089111	3300012359	Vadose Zone Soil	LLISIRDCRHSKKDRLWIQSVYSEYIDSLADLNTGLFSVIGADNPRED
Ga0137419_103395201	3300012925	Vadose Zone Soil	VSSLLVSIRDCRQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLG
Ga0137419_105126441	3300012925	Vadose Zone Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPREDEIFA
Ga0137404_114326771	3300012929	Vadose Zone Soil	LLISIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPREDEIFAN
Ga0168317_10369153	3300012982	Weathered Mine Tailings	LLVSIRDCRHSKKDRQWIQDVYPEYLDALSDLNTGLFSVLGDS
Ga0181524_104275702	3300014155	Bog	LLVSIRDCRHSKKDRHWIQSIYAEYIDALADLNTGLFPVIGAGNPREDEIFANWFAN
Ga0181530_100545501	3300014159	Bog	LLVSIRDCRHSKKDRQWIQHVYAEYIEALADLNTGLFSVIGGDNPHEDEIFAH
Ga0181523_100942372	3300014165	Bog	LLVSIRDCRHSKKDRQWIQSIYAEYIDALADLNTGLFPVIGAGNPRED
Ga0181531_104057233	3300014169	Bog	MRRKEVSSTLVSIRDCRHSKKDRQWIRDVYGEYLDALSDLNTGLFSVLGGDNPH
Ga0181537_102274243	3300014201	Bog	LLVSIRDVRSSPKDQRWIRSVYGEYLESLADLNTGFFSVIGAENARQDEIFANWFSN
Ga0182024_111880341	3300014501	Permafrost	VSSLLVSIRDCRHSKKDRQWIQDIYGEYLDALSDLNTGLFSVLGSDNPR
Ga0181522_108838781	3300014657	Bog	LLVSIRDCRHSQKDRQWIQNVYAEYIDALADLNTGLFPVIGA
Ga0157379_115352781	3300014968	Switchgrass Rhizosphere	LLVSIRDCRHSKKDRQWIQSVYAEYIDSLADLNTGLFSVIGADNPHEDEIFAHWF
Ga0181515_11587011	3300016730	Peatland	LLVSIRDCRHSKKDRQWIQNVYAEYIDALADLNTGLFSVLGADNPREDEIF
Ga0187883_103487773	3300018037	Peatland	VSSLLVSIRDCRHSKRDRQWIKDVYGEYLDALSDLNTGLFSVLGGDNPH
Ga0187859_103093683	3300018047	Peatland	VSSLLVSIRDCRHSKRDRQWIKDVYGEYLDALSDLNTGLFSVLGGDNPREDEIFANWFAN
Ga0184582_1297932	3300019164	Soil	LLVSIRDCRHSKKDRQWIQNVYAEYLDALADLNTGLFSVLGADNPREDEIFANWFA
Ga0184599_1138532	3300019188	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSVIGADNPHEDEIFA
Ga0184586_1430901	3300019194	Soil	LLVSIRDCRHSKEDRQWIQNVYAEYLDALADLNTGLFS
Ga0181514_14584201	3300019268	Peatland	LLVSIRDVRSSPKDQRWIRSVYGEYLESLADLNTGFFSVIGAENARQDEIFANWFSNDQAHP
Ga0181512_12682511	3300019270	Peatland	MSSLLVSIRDCRHSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPREHEIFANWFAN
Ga0181512_16298421	3300019270	Peatland	LLISIRDCRHSKKDRQWIQSVYGEYMDSLADLNTGLFSVLGAGTAHEDEIFANWFAND
Ga0187798_17200031	3300019275	Peatland	MLISIRDCKYSKKDRQWIEYVYGEYLDSLAGLNTGFFPAISADTPQK
Ga0193717_11641741	3300020060	Soil	LLVSIRDCRHLKKDRQWIQSVYGEYMDSLADLNTGLFSVLGADNPHEDEIFANWFANDQ
Ga0210407_111728611	3300020579	Soil	LLISIRDCRHSKNDRQWIQSVYGEYIDSLADLNTGLFSVIG
Ga0210403_103222773	3300020580	Soil	MASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIFANWFAN
Ga0210400_115564282	3300021170	Soil	LVSIRDVGRSKQDRQWIQSVYGEYIESLADLNTGLFSVLGTANPHQDEIFAN
Ga0210396_114948622	3300021180	Soil	LLISIRDCRQSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPRED
Ga0210387_118105512	3300021405	Soil	VASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADN
Ga0210390_109186452	3300021474	Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGA
Ga0210392_102961443	3300021475	Soil	LRPERVASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLG
Ga0210410_103292243	3300021479	Soil	MASLLVSIRDCKHSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIFA
Ga0210409_112635642	3300021559	Soil	VASLLVSIRDCKKSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIFA
Ga0242652_10491432	3300022510	Soil	LLISIRDCRHSKNDRQWIQSVYGEYIVSLADLNTGLFSVIGADNPREDEIFANWFS
Ga0242669_11162631	3300022528	Soil	LLVSIRDCRHSKKDRQWIQEVYPEYLDALADLNTGLFSVLGASNPHQDEIF
Ga0242669_11187562	3300022528	Soil	LLVSIRDVGRSKQDRQWIQSVYGEYIDSLADLNTGLFSVLSAGSPHQDEIFANWFSNDQS
Ga0242668_11404251	3300022529	Soil	LLVSIRDCRHSKKDRQWIQSIYGEYIDALADLNTGLF
Ga0242660_12436422	3300022531	Soil	LLISIRDCRHSKNDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPRE
Ga0242655_102253762	3300022532	Soil	MASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNP
Ga0242662_103121612	3300022533	Soil	VASLLVSIRDCKQSKKDRKWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIFANWFA
Ga0242670_10680202	3300022708	Soil	LLISIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSV
Ga0222756_10939131	3300022709	Soil	LVSIRDVGRSKQDRQWIQSVYGEYIESLADLNTGLFSVLGTANPHQD
Ga0242653_11021912	3300022712	Soil	LLVSIRDVGRSKQDRQWIQSVYGEYIDSLADLNTGLFSVLSAGSPHQDEIFANWFS
Ga0242675_11164371	3300022718	Soil	LLISIRDCRHSKKDRQWIQSVYGEYIDALADLNTGLFSVIGADNPREDEIFANW
Ga0242675_11329571	3300022718	Soil	LVSIRDVGRSKQDRQWIQSVYGEYIESLADLNTGLFSVLGTANPHQDEIFANW
Ga0242654_103810882	3300022726	Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNPHEAEIFANWF
Ga0242654_103824492	3300022726	Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVI
Ga0247554_1059361	3300023547	Soil	LLVSIRDCRHSKKDRQWIQNVYAEYLDALADLNTGLFSVLGADNPREDG
Ga0224564_10780123	3300024271	Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGLFSVLGA
Ga0247666_10168943	3300024323	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYIDSLADLNTGLFSVI
Ga0207663_109579422	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LLVSIRDCRHSKKDRQWIQSVYAEYIDSLADLNTGLFSVIGADNPHEDE
Ga0209438_10720601	3300026285	Grasslands Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGGDNPREDEIFA
Ga0257149_10404632	3300026355	Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPREDEIFANWFSN
Ga0257160_10681002	3300026489	Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGADNPREDEIFANWFSND
Ga0208236_10128271	3300027066	Forest Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNP
Ga0208602_10266232	3300027067	Forest Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGLFSVLGAGN
Ga0207947_10080031	3300027171	Forest Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGL
Ga0209010_10372813	3300027370	Forest Soil	VSILKIGEANSLLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSVIGADNPHEDEIFANWFSSSRRQRQISQKC
Ga0209420_11362281	3300027648	Forest Soil	VSILKIGEANSLLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGFFSVIGANNPHEDEIFANWFSN
Ga0208990_10760053	3300027663	Forest Soil	VASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIFANWFAN
Ga0209772_101409661	3300027768	Bog Forest Soil	LVSIRDVKRSKQDRQWIQSVYGEYIESLADLNTGLFS
Ga0209139_102832821	3300027795	Bog Forest Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGLFSVLG
Ga0209112_101193381	3300027817	Forest Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGMFPVLGAGNP
Ga0209274_103870141	3300027853	Soil	LLVSIRDCRHSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPREHEIFANWFAN
Ga0209169_105169732	3300027879	Soil	LLVSIRDCRHSKKDRQWIQTVYGEYIDALADLNTGLFSV
Ga0209006_115228072	3300027908	Forest Soil	MASLLVSIRDCKQSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPHEHEIF
Ga0209698_103405111	3300027911	Watersheds	VKLSSLLVSIRDCKHSKKDRGWIQDVYGEYLDALSDLNTGLFSVLGADNPREHEI
Ga0302147_101217681	3300028566	Bog	VSSTLVSIRDCRHSKKDRQWIQDVYGEYLDSLADLNTGLF
Ga0302266_102104652	3300028779	Bog	VLISIRDCRHSKKDRQWIQDVYGEYMEALSDLNTGLFSVIGADNPHKD
Ga0302225_106078321	3300028780	Palsa	MAKVCASLLVSIRDCRHSKRDRQWIQEVYPEYLDSLADLNTGLFS
Ga0302226_101328091	3300028801	Palsa	LLVSIRDCRHSKKDRQWIQTVYGEYIDALADLNTGLFS
Ga0302154_105834931	3300028882	Bog	VSSLLVSIRDCRHSKKDRQWIQDVYGEYLDALSDL
Ga0308309_105603821	3300028906	Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTG
Ga0311358_111422881	3300029915	Bog	LLVSIRDCRHSKKDRQWIQDVYGEYIDSLSDLNTGLFSVIGADNPRKDEIFANWFSNEHS
Ga0311340_1000949724	3300029943	Palsa	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNPHEAEIFAN
Ga0311339_119274921	3300029999	Palsa	LLVSIRDCRHSKKDRQWIQTVYGEYIDALADLNTGLFSVLGADNPREDEIFA
Ga0311338_102481851	3300030007	Palsa	LLVSIRDCRHSKKDRQWIQEVYPEYLDSLADLNTGL
Ga0311338_106751511	3300030007	Palsa	LLISIRDCRHSKKDRQWIQSVYGEYMDALADLNTG
Ga0311344_106390123	3300030020	Bog	VSGGLVSIRDCRHSKRDRQWIQDVYGEYLDALSDLNTGLFSVLGRDNPREHEIF
Ga0302182_103872311	3300030054	Palsa	LLISIRDCRHSKKDRQWIQNVYAEYMDALADLNTGLFSV
Ga0302196_102350051	3300030225	Bog	VSGGLVSIRDCRHSKRDRQWIQDVYGEYLDALSDLNTGLFSVLGRD
Ga0311353_102282752	3300030399	Palsa	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNPH
Ga0311353_110406363	3300030399	Palsa	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGLFSVLGASNSHQ
Ga0311372_101741801	3300030520	Palsa	LLVSIRDCRHSKKDRQWIQGVYPEYLDALADLNTGLF
Ga0311357_102077462	3300030524	Palsa	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNPHEAE
Ga0210267_10766012	3300030526	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSVIGADNPHEDEIFANWF
Ga0210252_106838221	3300030548	Soil	LLVSIRDCRHSKKDRQWIQEIYPEYLDALADLNTGLFSVLGASNPHQDEI
Ga0210252_107121962	3300030548	Soil	MSIARFGEAVSLLISIRDCRHSKKDRQWIQSVYSEYMDSLADLNTGLFTVIGANSPREEEIFANWFSN
Ga0210257_103787482	3300030549	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSVIGADNPHEDEIFANWFSN
Ga0210278_11302151	3300030596	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSV
Ga0210254_101354591	3300030602	Soil	LVSIRDVGRSKQDRQWIQSVYGEYIESLADLNTGLFSVLGTANPHQDEIFANWFSNDQ
Ga0210253_100702812	3300030603	Soil	MSIARFGEAVSLLISIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFSVIGGNNPHEDEIFANWFAN
Ga0311354_108990511	3300030618	Palsa	LLISIRDCRHSKKDRQWIQDVYGEYIDSLSDLNTGLFSVIGADNPRKDEIF
Ga0210251_104279222	3300030624	Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLSSVIGANNPHEAEIFANIMDTKYRLKKK
Ga0307920_1205652	3300030716	Soil	VSVSIRDCKHSKKDRQWIQDVYGEYLESLSTLNTGFFPAVGADNPH
Ga0307482_12821731	3300030730	Hardwood Forest Soil	LLISIRDCRHSKKDRQWIQEVYPEYLDALADLNTGLFSVLGASNPHQDE
Ga0265459_142852191	3300030741	Soil	LLISIRDCRHSKKDRQWIQNVYAEYMDALADLNTGLFSVIG
Ga0265775_1146182	3300030762	Soil	MSSLLVSIRDCRHSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNPREHE
Ga0075396_10056432	3300030776	Soil	LLISIRDCRHSKKDRHWIQSVYGEYIDSLADLNTGLFSVIGADSPREDEIFANWF
Ga0265772_1061872	3300030886	Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDALADLNTGLFSVLGADNPREDEIFANWFS
Ga0265772_1069472	3300030886	Soil	LLVSIRDCRHSKKDRQWIQSVYAEYMDSLADLNTGLFSVIGADNPHEDEIFAN
Ga0074034_111319432	3300030950	Soil	VLISIRDCRHSKKDRQWIQSVYAEYMDSLTDLNTGLFSVIGAGNPHEDEIFANWFS
Ga0265768_1116531	3300030963	Soil	LLVSIRDVRHSKQDRQWIQSVYGEYIESLADLNTGLFSVIGANNPHEAEIFA
Ga0170823_108524101	3300031128	Forest Soil	LLVSIRDVRSSTKDRRWIQSVYGEYLESLSDLNTGLFSVIGADNPREDEIFANWFSNDQAHPL
Ga0170823_148305192	3300031128	Forest Soil	LLISIRDCRHSKKDRHWIQSVYGEYIDSLADLNTGLFSVIGADNPREDEIFANWFS
Ga0170824_1117461862	3300031231	Forest Soil	LLVSIRDCRHSKKDRQWIQSVYGEYLDALADLNTGLFSVLGADSPREDE
Ga0302318_103707151	3300031258	Bog	MLVSIRDCRHSNKDRAWIQTVYGEYIESLSDLNTGLFSVIGA
Ga0302140_108541702	3300031261	Bog	LLVSIRDCRHSKQDHDWIRSVYGEYLDSLADLNTGFFSVIG
Ga0170820_123235302	3300031446	Forest Soil	LLISIRDCRHSKKDRQWIQSVYGEYIESLADLNTGLFSVIGANNPHEA
Ga0302320_107492534	3300031524	Bog	MLVSIRDCRHSNKDRAWIQTVYGEYIESLSDLNTGLFSVIGADNPQKDEIFAN
Ga0302320_117664852	3300031524	Bog	VLSLQVSIRDCKHSKPDRRWIQGVYGEYLDALSDLNTSLLSVLGTDGPREQ
Ga0307508_106634722	3300031616	Ectomycorrhiza	MASLLVSIRDCKQSKKDRQWIQDVYGEYLDALADL
Ga0307476_107190623	3300031715	Hardwood Forest Soil	LLISIRDCRHSKKDRQWIQTVYGEYIDALADLNTGLFSVLG
Ga0307477_101547771	3300031753	Hardwood Forest Soil	LLVSIRDCRHSKKDRQWIQSVYGEYIDSLADLNTGLFS
Ga0316045_1279091	3300031815	Soil	LLVSIRDCRHSKKDRQWIQDVYGEYLDALSDLNTGLFSVLGADNP
Ga0316035_1135711	3300031955	Soil	LLISIRDCRHSKKDRQWIQDVYGEYIDSLSDLNTGLFSVIGADNPRKDE
Ga0348332_100140211	3300032515	Plant Litter	LLVSIRDCRHSKKDRQWIQDVYGEYIDSLSDLNTGLFSVIGADNPRKDEIF

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign