Metagenome / Metatranscriptome Family F055477

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	54 residues
Representative Sequence	AAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALALAGA
Number of Associated Samples	89
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.71 %
% of genes near scaffold ends (potentially truncated)	46.38 %
% of genes from short scaffolds (< 2000 bps)	47.83 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.464 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (46.377 % of family members)
Environment Ontology (ENVO)	Unclassified (60.145 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (46.377 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00583	Acetyltransf_1	25.36
PF03243	MerB	6.52
PF01717	Meth_synt_2	5.07
PF01022	HTH_5	2.17
PF02426	MIase	0.72
PF02861	Clp_N	0.72
PF12697	Abhydrolase_6	0.72
PF13977	TetR_C_6	0.72
PF13523	Acetyltransf_8	0.72
PF10604	Polyketide_cyc2	0.72
PF03483	B3_4	0.72
PF01906	YbjQ_1	0.72
PF02317	Octopine_DH	0.72
PF00909	Ammonium_transp	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	5.07
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.72
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.72
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
All Organisms	root	All Organisms	27.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
cellular organisms	root	All Organisms → cellular organisms	27.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.72 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.72 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.72 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.72 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.72 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.72 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Streptacidiphilus carbonis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus carbonis	0.72 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.72 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.46 %
Frankia sp. R82	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. R82	0.72 %
Streptacidiphilus carbonis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus carbonis	0.72 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_108028553	Not Available	528	Open in IMG/M
3300005332\|Ga0066388_108114483	Not Available	524	Open in IMG/M
3300005332\|Ga0066388_108115621	Not Available	524	Open in IMG/M
3300005332\|Ga0066388_108844453	Not Available	500	Open in IMG/M
3300005542\|Ga0070732_10212448	Not Available	1157	Open in IMG/M
3300005764\|Ga0066903_102239934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1054	Open in IMG/M
3300005764\|Ga0066903_108151183	Not Available	536	Open in IMG/M
3300006914\|Ga0075436_100579094	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300009143\|Ga0099792_11153251	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300010361\|Ga0126378_12818771	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300010398\|Ga0126383_11331416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	808	Open in IMG/M
3300010868\|Ga0124844_1157694	Not Available	854	Open in IMG/M
3300011269\|Ga0137392_10810842	Not Available	773	Open in IMG/M
3300011271\|Ga0137393_11344517	Not Available	603	Open in IMG/M
3300012096\|Ga0137389_11295454	Not Available	622	Open in IMG/M
3300012199\|Ga0137383_10297169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	1183	Open in IMG/M
3300012210\|Ga0137378_10549734	Not Available	1063	Open in IMG/M
3300012211\|Ga0137377_11280208	Not Available	663	Open in IMG/M
3300012353\|Ga0137367_10020678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5148	Open in IMG/M
3300012356\|Ga0137371_10410634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus carbonis	1049	Open in IMG/M
3300012356\|Ga0137371_10749478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300012357\|Ga0137384_10622061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300012357\|Ga0137384_11376030	Not Available	554	Open in IMG/M
3300012363\|Ga0137390_10076817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. R82	3277	Open in IMG/M
3300012363\|Ga0137390_10926918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	825	Open in IMG/M
3300012363\|Ga0137390_11409515	Not Available	641	Open in IMG/M
3300016270\|Ga0182036_10394920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300016319\|Ga0182033_10704348	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300016357\|Ga0182032_11838699	All Organisms → cellular organisms → Bacteria → Terrabacteria group	530	Open in IMG/M
3300016387\|Ga0182040_11554567	Not Available	563	Open in IMG/M
3300016422\|Ga0182039_11446012	Not Available	625	Open in IMG/M
3300016445\|Ga0182038_12040979	Not Available	519	Open in IMG/M
3300027842\|Ga0209580_10215501	Not Available	953	Open in IMG/M
3300027873\|Ga0209814_10077523	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1400	Open in IMG/M
3300028884\|Ga0307308_10194836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300031543\|Ga0318516_10454249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300031546\|Ga0318538_10588265	Not Available	604	Open in IMG/M
3300031573\|Ga0310915_10562696	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300031640\|Ga0318555_10050173	Not Available	2113	Open in IMG/M
3300031679\|Ga0318561_10287627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300031713\|Ga0318496_10071219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1831	Open in IMG/M
3300031713\|Ga0318496_10219735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1046	Open in IMG/M
3300031724\|Ga0318500_10226689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300031747\|Ga0318502_10138145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1382	Open in IMG/M
3300031781\|Ga0318547_10432742	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300031819\|Ga0318568_10176530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1313	Open in IMG/M
3300031831\|Ga0318564_10186225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	925	Open in IMG/M
3300031831\|Ga0318564_10505481	Not Available	524	Open in IMG/M
3300031832\|Ga0318499_10387761	Not Available	535	Open in IMG/M
3300031846\|Ga0318512_10601087	Not Available	561	Open in IMG/M
3300031890\|Ga0306925_11008431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300031890\|Ga0306925_11151843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	780	Open in IMG/M
3300031897\|Ga0318520_10816246	Not Available	585	Open in IMG/M
3300031910\|Ga0306923_10760679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1073	Open in IMG/M
3300031910\|Ga0306923_12092202	Not Available	571	Open in IMG/M
3300031954\|Ga0306926_10792189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1143	Open in IMG/M
3300031954\|Ga0306926_10925218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1042	Open in IMG/M
3300032010\|Ga0318569_10279433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	776	Open in IMG/M
3300032025\|Ga0318507_10364234	Not Available	630	Open in IMG/M
3300032054\|Ga0318570_10035643	Not Available	2001	Open in IMG/M
3300032054\|Ga0318570_10186511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	935	Open in IMG/M
3300032054\|Ga0318570_10533943	Not Available	535	Open in IMG/M
3300032067\|Ga0318524_10301909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	828	Open in IMG/M
3300032067\|Ga0318524_10548644	Not Available	608	Open in IMG/M
3300032068\|Ga0318553_10483206	Not Available	649	Open in IMG/M
3300032076\|Ga0306924_11552931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	700	Open in IMG/M
3300032090\|Ga0318518_10656828	Not Available	534	Open in IMG/M
3300032261\|Ga0306920_101938032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	827	Open in IMG/M
3300033289\|Ga0310914_10381397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1275	Open in IMG/M
3300033289\|Ga0310914_11741303	Not Available	527	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.83%
Host-Associated	Host-Associated	2.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.83%
Plants	Host-Associated → Plants	2.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.17%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.96%
Loam	Environmental → Terrestrial → Soil → Loam	10.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.17%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.17%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	46.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1032388601	3300005332	Tropical Forest Soil	VHNATVRRELAVCAGSVGLTMAESFLRHDRAGEAAGAAPGMVRALQQALSLAAA*
Ga0066388_1041972361	3300005332	Tropical Forest Soil	REFAVCAGSVGLTMAESFLRHGRAGEAAGAVPGMVRALEQALALTGA*
Ga0066388_1062803811	3300005332	Tropical Forest Soil	VCAGSVGLTMAESFVRHGRAGEAAGAVPAMVRALEQALALTGA*
Ga0066388_1080285531	3300005332	Tropical Forest Soil	LVGAGHGQLTESAAARLWACAAGLNRREFAVCAGSVGLTMTESFQRHGRSGEATGEVPGMVQALEQALALAGA*
Ga0066388_1081144831	3300005332	Tropical Forest Soil	VGAGHGQLTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFVRHGRTGEAAGAVPGMVRALEQALALTGA*
Ga0066388_1081156211	3300005332	Tropical Forest Soil	WACAAGLDRREFAVCAGSVALTMAESFLRHGRTGEAAGAAPGMVRALEQALALAGA*
Ga0066388_1088444531	3300005332	Tropical Forest Soil	GAGHGHVTESAAARLWACAAGLDGREFAVCAGSVGLTMAESFLRHGRTGEAASAVPEMVRALKQALTLADA*
Ga0008090_151025011	3300005363	Tropical Rainforest Soil	REFAVCAGSVGLTMAESFLRHGRTGEAAGAVPGMVCALEQALSLAGA*
Ga0070711_1011548072	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AGSVALTMADAFVRHGRAGEAADVVPGVTRTLERALASA*
Ga0070706_1005222431	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VCAGSVGLTMAESFVRHGRTGEAAAAVPGMARALKQALALAGG*
Ga0070707_1000575707	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AVCAGSVGLTMAESFLRHGRAGEAAGAIPGMVRALKQALSLASA*
Ga0070732_102124482	3300005542	Surface Soil	VGYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGQAAGAVPGTVRALKHALSLAGG*
Ga0066903_1022399343	3300005764	Tropical Forest Soil	TESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFVRHGRAGEAAGAVPGMVRALEQALALTGA*
Ga0066903_1055349301	3300005764	Tropical Forest Soil	MAESFLRHGRTGEAAGAVPEMVRALEQALALAGE*
Ga0066903_1081511831	3300005764	Tropical Forest Soil	LTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGETAGAVPGMVRALEQALALAGA*
Ga0075426_106591053	3300006903	Populus Rhizosphere	DRREFAICAGSVGLTMADSFIRHGRAGEAADVVPGVVRTLKQALALARA*
Ga0075436_1005790941	3300006914	Populus Rhizosphere	TESAAVRLWACAAGLDRREFAICAGSVGLTMADSFFRHGRAGEAADVVPGVVRTLKQALALARA*
Ga0099829_116922171	3300009038	Vadose Zone Soil	DRREFAICAGSVGLTTADAFARHHRTGQAAAAVAGMVRALEQVLAIAGA*
Ga0099792_111532511	3300009143	Vadose Zone Soil	GAGHGHVTESAAARLWTYAAGLDRREFAVCAGSVGLTMAESFLRHGRAGQAAGAVPGMVRALEQALALASA*
Ga0126374_103460242	3300009792	Tropical Forest Soil	LDRREFAVCAGSVGLTMAESFLRHGRAGQAAGAVPGMVRALEQALALAGA*
Ga0126374_111972941	3300009792	Tropical Forest Soil	AVCAGSVGLTMAESFLRHGRIGEAAGAVPEMVRALERALSLAGA*
Ga0126380_104258071	3300010043	Tropical Forest Soil	VALTMAESFLRHGRTGEAAGAGPGMVRALEQALALAGA*
Ga0126373_103439001	3300010048	Tropical Forest Soil	LDRREFAVCAGSVGLTMAESFLRHGRTGQAAGAVPAMVRALKQALSLAGT*
Ga0126378_101215664	3300010361	Tropical Forest Soil	GLTMAESFVRHGRTGDAAGAVPAMVRALEQALALAGG*
Ga0126378_120678591	3300010361	Tropical Forest Soil	AVCAGSVGLTMAESFLRHDRAGEAAGAAPGMVRALQQALSLAAA*
Ga0126378_128187711	3300010361	Tropical Forest Soil	TESAAARLWAYGAGLDRREFAVCVGSVGLTMADAFVRHGRTGQAAGAVPGMVRTLERALALAA*
Ga0126381_1048253422	3300010376	Tropical Forest Soil	EFAVCAASVALTMAESFVRHGRAGQTAGAIPGMVRALRQALCLAGA*
Ga0126383_113314162	3300010398	Tropical Forest Soil	HGHVTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRAGEAAGAVPGMVRALEHALALTGA*
Ga0124844_11576941	3300010868	Tropical Forest Soil	VPGTAIFSESAAARLWACAAGMDRREFAVCAGSVGLTMTESFQRHGRSGEATGEVPGMVQALEQALALAGA*
Ga0137392_108108423	3300011269	Vadose Zone Soil	ARLWTYAAGLDRREFAICAGSVGLTMAQSFVRHGRAGDAASAVPGIVRTMEQALALAEA*
Ga0137393_108377981	3300011271	Vadose Zone Soil	ICAGSVGLTMAESFVRHGRTGEAAGAVPGMVQALEQALALAGA*
Ga0137393_113445172	3300011271	Vadose Zone Soil	VAAEHGNLTESAAARLWAYAAGLDRREFAICAGSVGLTMADAIARHGRSGAAAGAIPRIVGTLERALDLAGP*
Ga0137389_112954541	3300012096	Vadose Zone Soil	DLAEALLVAAEFGHVTESAAARLWAYGAGLDRREFAICAGSVGLTMADAFIRHRRLDLAAGAVPGMVRTLEQVLALASA*
Ga0137383_102971691	3300012199	Vadose Zone Soil	VGYGAGLDRRELAICAGSVGLTMADAFVRHDRTEEGAAAVPGMVRALEQALALAGA*
Ga0137376_117140522	3300012208	Vadose Zone Soil	GLDPREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPGMVRALKQALSLTDV*
Ga0137378_105497341	3300012210	Vadose Zone Soil	SAAAKLWAYGAGLDRREFAICAGSVAMTMAESFVRHDRTGQAAGAVPGMVRTLERVLALTGA*
Ga0137377_105841992	3300012211	Vadose Zone Soil	AGSVGLTMADAFVRHDRTEEGAAAVPGMMRALEQALALAGA*
Ga0137377_112802082	3300012211	Vadose Zone Soil	ARLRAYGAGLDRREFAICAGSIGLTMADAFIRHRRLDLAAGAVPGMVRTLGQVLALAGA*
Ga0137367_100206788	3300012353	Vadose Zone Soil	GHGHATESAAARLWAYAAGLDRREFAICAGSVGLTMAESFVRHGRTGEAAGAVPGMVRALKQALSLAGA*
Ga0137371_104106342	3300012356	Vadose Zone Soil	VAGQVALAPDLSVVGEGDLAESAAAKLWAYGAGLDRREFAICAGSVAMTMAESFVRHDRTGQAAGAVPGMVRTLERVLALTGA*
Ga0137371_107494782	3300012356	Vadose Zone Soil	WAYGAGLDRREFAICAGSGGLTLADGLVRHDRLGQAVEAVPAVTRTLERVLALALAGA*
Ga0137384_106220611	3300012357	Vadose Zone Soil	TESAAARLWAYAAGLDRREFAICAGSVGLTMADAFVRHHRTGQAAAAVPGMVRALEQALALARP*
Ga0137384_113760301	3300012357	Vadose Zone Soil	VLAESAAAKLWAYGAGLDRREFAICAGSVAMTMAESFVRHDRTGQAAGAVPGMVRTLERVLALTGA*
Ga0137390_100768171	3300012363	Vadose Zone Soil	VIGHLTESAAARLWTYAAGLDRREFAICAGSVGLTMAQSFVRHGRAGDAASAVPGIVRTMEQALALAEA
Ga0137390_109269182	3300012363	Vadose Zone Soil	RLWAYAAGLDGREFAICAGSVGLTMAESLVRHGRAGEAAAAVPGLVRGLEQARALAGA*
Ga0137390_114095151	3300012363	Vadose Zone Soil	LWGYGAGLDRREFAICAGSVGLTTADAFVRHHRTGQAAAAVAGMVRALEQVLAIAGA*
Ga0126375_116938002	3300012948	Tropical Forest Soil	CAAGLDRRQFAVCAGSAGLTMAESFLRHGRTGEAAGAVPGMVRALEQALALAGA*
Ga0182036_103949203	3300016270	Soil	LWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRAGQAAGAVPGMVRALRQALCLAGA
Ga0182033_107043481	3300016319	Soil	AARLCACAAGLDRREFAVCAGSVGLTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0182032_118386991	3300016357	Soil	AYAAGLDRRDFAVCAGSVGLTMAESFLRHRRAGEAAGAVPGMVRALEQALALTGA
Ga0182040_115545673	3300016387	Soil	ARLWACAAGLDRREFAVCAGSVALTMAESFVRHGRTGGAAGAVPEMVRALTQALSLAGA
Ga0182040_119751711	3300016387	Soil	LTMAESFVRHGRAGQAAAAVPEMVRALGQALALAGA
Ga0182039_114460121	3300016422	Soil	HGHVTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRVLEQALALAGA
Ga0182038_117423041	3300016445	Soil	ALTMAESFARHGRTGQAAGAVPEMARALTQALSIAGA
Ga0182038_120409792	3300016445	Soil	ESAAAQLWAYAAGLDRRDFAVCAGSVGLTMAESFLRHRRAGEAAGAVPGMVRALEQALALTGA
Ga0179594_102406761	3300020170	Vadose Zone Soil	GSVALTMAYAFIRHGRAGEAADVVPGVVRTLEQALALASA
Ga0126371_107115121	3300021560	Tropical Forest Soil	LAVCAGSVGLTMAESFLRHDRAGEAAGAAPGMVRALQQALSLAAA
Ga0126371_109665421	3300021560	Tropical Forest Soil	VGLTMAESFLRHGRTGEAAGAVPGMVRALEQALALAVA
Ga0126371_124279702	3300021560	Tropical Forest Soil	EFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRVLEQALALAGA
Ga0207693_103171022	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GLTMADGFIRHGRLEEAAGAVPGMVRTLEQALALAGT
Ga0209580_102155011	3300027842	Surface Soil	VGYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGQAAGAVPGTVRALKHALSLAGG
Ga0209814_100775231	3300027873	Populus Rhizosphere	LWAYAAGLDRREFAVCAGSAGLTMAESFVRHGRAGEAAGAVPGMVRALEQALSLIGA
Ga0307308_101948361	3300028884	Soil	SAAARLWAYGAALDRREFAICAGSVGLTMADFFVRHDRLDQAAGAVPAMVRTLEQVLALAGA
Ga0318516_100123582	3300031543	Soil	LPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALALAGA
Ga0318516_104542493	3300031543	Soil	WACAAGLDRREVAVCAGSVALTMAESFVRHGRTGEAAGAVPEMVRALTQALSLAGA
Ga0318516_104600621	3300031543	Soil	CAGSVALTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0318538_105882651	3300031546	Soil	WAYAAGLDRREFAVCAGSVGRTLAESFLRHGRTGEAAGAVPRMVRALQQALALTGA
Ga0318573_105509572	3300031564	Soil	GLDRREFAVCAGSVGLTMAESFVRHGCAGQAAGAVPGMMRALGQALALARA
Ga0310915_105626961	3300031573	Soil	AARLWAYAAGLDRREFAVCEGSIALTMAESFVRHGRAGQAAAAVPEMVRALGQALALAGA
Ga0318555_100501731	3300031640	Soil	AAGLDRREFAVCAGSVGLTMAESFVRHGRAGDAAGAVPGMVRALEQALALAGA
Ga0318555_101848521	3300031640	Soil	LPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRVLEQALALAGA
Ga0318555_105645261	3300031640	Soil	GLTMAESFVRHGCAGQAAGAVPGMMRALEQALALAGA
Ga0318542_106602051	3300031668	Soil	LPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRALE
Ga0318561_102876273	3300031679	Soil	LWASAAGLDRREFAVCAGSVGLTMAESFLRHGRTDEAAGAVPGMVRALKQALSLAAA
Ga0318496_100712191	3300031713	Soil	LWAYAAGLDRREFAVCAGSVALTMAESFLRHGRAGQAAGAVPGMVRALEQALALAGA
Ga0318496_102197352	3300031713	Soil	LWACAAGLDRREFAVCAGSVGLTMAESFLRHGRTDEAAGAVPGMVRALKQALSLAAA
Ga0318500_102266892	3300031724	Soil	PTTWPRRCWSVPGTAMSPSPPRPRLWAYAAGLDRREFAVCAGSVALTMAESFLRHGRAGEAAGAVPGMVRALERALALAGA
Ga0318500_102422901	3300031724	Soil	AGSVGLTMAESFLRHGRTSEAAGAVPGMVRALEQALALAGL
Ga0318502_101381451	3300031747	Soil	GHVTESAAARLWACAAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPGMVRALEQALALAGL
Ga0318492_102390512	3300031748	Soil	RREFAVCAGSVGLTMAESIPRHGRAGQAAGAVPAMVRALKQALALAGA
Ga0318494_107076442	3300031751	Soil	FAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRTLEQALALAGA
Ga0318494_109397062	3300031751	Soil	LTMAESFVRHGRAGQAAAAVPEMVRALGQALALAGP
Ga0318554_103642381	3300031765	Soil	AAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALALAGA
Ga0318521_108910832	3300031770	Soil	VCAGSVALTMADSFFRHGRAGEAAGAVPGMVRALERALALAGA
Ga0318546_105678031	3300031771	Soil	AGLDRQEFAVCAGSVALTMAESFVRHGRTGQAAGAVPGMVRALEQALALAGA
Ga0318547_104327421	3300031781	Soil	PGSPARLWACAAGLDCREFAVCAGSVALTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0318552_102408474	3300031782	Soil	LTMAESFLRHGRTDEAAGAVPGMVRALKQALSLAAA
Ga0318552_104858001	3300031782	Soil	FAVCAGSVALTMAESFVRHGRAGEAAGAVPAMVRALKQALSLAGA
Ga0318550_100391001	3300031797	Soil	LPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRALEQ
Ga0318497_108331981	3300031805	Soil	LPGRNKLAVCAGPVGLTMAESFLRHGRAGEAAGAVPEMVRALEQALALA
Ga0318568_101765301	3300031819	Soil	TQSAAARLWACAAGLDRREFAVCAGSVGLTMAESFLRHGRTDEAAGAVPGMVRALKQALSLAAA
Ga0318568_105495231	3300031819	Soil	GLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPGMVRALEQALALSGA
Ga0318567_108515141	3300031821	Soil	GLDRREFAVCAGSVALTMADSFFRHGRAGEAAGAVPGMVRALERALALAGA
Ga0318564_101862252	3300031831	Soil	ALLVGAGHGHVTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRTLEQALALAGA
Ga0318564_104483721	3300031831	Soil	LPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALAL
Ga0318564_105054811	3300031831	Soil	AGLDRREFAVCAGSVALTMAESFVRHGRVGQAAGAVPEMVRALGQALALAGA
Ga0318499_103877612	3300031832	Soil	LLVGAGHGHVTQSAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGQAAGAVPEMVRALEQALALAGA
Ga0318512_106010871	3300031846	Soil	RLWASAAGLDRREFAVCAGSVGLTMAESFLRHGRTREAAGAVPGMVRALEQALALAGEWPVDLRARVG
Ga0306925_110084311	3300031890	Soil	LWAYAAGLDRREFAVCAGSVGLTMAESFVRHGCAGQAAGAVPGMMRALGQALALARA
Ga0306925_111518432	3300031890	Soil	GAGHGHLTESAAARLWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRTGQAAGAVPGMVRALKQALSLAGA
Ga0318536_103246481	3300031893	Soil	SVALTMAESFLRHGRAGQAAAAVPGMVRALGQALALAGA
Ga0318551_107660902	3300031896	Soil	AGSVGLTMAESFLRHRRAGEAAGAVPGMVRALEQALALTGA
Ga0318520_108162461	3300031897	Soil	ARLWACAAGLDCREFAVCAGSVALTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0318520_110556681	3300031897	Soil	FAVCAGSVGLTMAESFVRHGCAGQAAGAVPGMMRALEQALALAGA
Ga0306923_107606793	3300031910	Soil	ARLWACAAGLDRREFAVCAGSVALTMAESFVRHGRTGEAAGAVPEMVRALTQALSLAGA
Ga0306923_109376171	3300031910	Soil	GLPGRNKFAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRVLEQALALAGA
Ga0306923_120922022	3300031910	Soil	VGAGHGHVTQSAAARLWACAAGLDRREFAVCAGSVGLTMAESFLRHGRTDEAAGAVPGMVRALKQALSLAAA
Ga0306923_123788982	3300031910	Soil	TMAESFVRHGCAGQAAGAVPGMMRALGQALALARA
Ga0310910_108440691	3300031946	Soil	LPGRNKLAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRTLEQALALAGA
Ga0310909_111285282	3300031947	Soil	REFAVCAGSVALTMAESFVRHGRAGEAAGAVPAMVRALKQALSLAGA
Ga0306926_107921892	3300031954	Soil	LLVGAGHGHLTESAAARLWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRTGQAAGAVPGMVRALKQALSLAGA
Ga0306926_109252183	3300031954	Soil	DRREFAVCAGSVALTMAESFVRHGRAGQAAAAVPEMVRALGQALALAGP
Ga0306926_115242841	3300031954	Soil	LPGRNKLAVCAGPVGLTVAESFLRHGRAGEAAGAVPEMVRALEQALALAGA
Ga0318562_106041281	3300032008	Soil	GSVGLTMAESFLRHGRTGEAAGAVPEMVRTLEQALALAGA
Ga0318569_102794332	3300032010	Soil	PPRPRLWAYAAGLDRREFAVCAGSVALTMAESFLRHGRAGEAAGAVPGMVRALERALALAGA
Ga0318507_103642343	3300032025	Soil	LTESAAARLWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRTGQAAGAVPGMVRALKQALSLAGA
Ga0318507_104675112	3300032025	Soil	FAVCAGSVALTMAESFLRHGRTGQAAGAVREMVRALEQALALAGA
Ga0318507_105155563	3300032025	Soil	REFAVCAGSVALTMAESFVRHGRTGEAAGAVPEMVRALTQALSLAGA
Ga0318559_103943501	3300032039	Soil	VALTMAESFLRHGRAGQAAAAVPGMVRALGQALALAGA
Ga0318506_100748392	3300032052	Soil	TMAESFVRHGRAGQAAGAVSEMARALTQALSLAGA
Ga0318506_101938392	3300032052	Soil	LPGRNKLAVCAGPVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALALAGA
Ga0318506_105107912	3300032052	Soil	AVCAGSVALTMAESFVRHGRTGQAAGAVPGMVRALEQALALAGA
Ga0318570_100356431	3300032054	Soil	LWAYAAGLDRREFAVCEGSIALTMAESFVRHGRAGQAAGAVSEMARALTQALSLAGA
Ga0318570_101865113	3300032054	Soil	LLVGAGHGHVTQSAAARLWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRTGQAAGAVPGMVRALKQALSLAGA
Ga0318570_105339431	3300032054	Soil	ALLVGAGHGHITESAAARLWACAAGLDRQEFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRVLEQALALAGA
Ga0318575_102429811	3300032055	Soil	AAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPEMVRTLEQALALAGA
Ga0318510_104909902	3300032064	Soil	VALTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0318524_103019091	3300032067	Soil	SAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGETAGAVPAMVRALEQALALAGA
Ga0318524_105486441	3300032067	Soil	PARLRAYAAGLDRREFAVCAGSVALTMADSFFRHGRAGEAAGAVPGMVRALERALALAGA
Ga0318524_106458761	3300032067	Soil	GLGLTMAESFVRHGCAGQAAGAVPGMMRALGQALALARA
Ga0318553_104832062	3300032068	Soil	LVGAGHGQLTESAAARLWAYAAGLDRREFAVCAGSVGLTMAESFLRHGRTGEAAGAVPGMVRALEQVRALAGA
Ga0306924_115529311	3300032076	Soil	AAARLWAYAAGLDRREFAVCAGSVALTMAESFVRHGRTGEAAGAVPAMVRALQQALSLAG
Ga0318518_106568281	3300032090	Soil	LVGAGHGHLTESAAARLWAYAAGLDRREFAVCAGSVGLTMADSFVRHGRTGQAAGAVPGMVRALKQALSLAGA
Ga0318577_100927653	3300032091	Soil	CREFAVCAGSVALTMAESFVRHGRTGQAAGAVPGMLRALGQALALAGA
Ga0306920_1019380322	3300032261	Soil	AAGLDRREFAVCAGSVGLTMAESFLRHGRTREAAGAVPGMVRALEQALALAGE
Ga0310914_103813971	3300033289	Soil	AARLWAYAAGLDRREFAVCAGSVALTMAESFVRHGRVGQAAGAVPEMVRALGQALALAGA
Ga0310914_106476711	3300033289	Soil	GLDRQEFAICAGSVGLTMAESFLRHGRTGEAAGAVPEMVRALEQALALAGA
Ga0310914_117413031	3300033289	Soil	HVTESAAARLWAYAAGLNRREFAVCAGSIGLTMAESFVRHGRTGEAAGAVPGMVRALEQALALTGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences