Basic Information | |
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Family ID | F055525 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 138 |
Average Sequence Length | 43 residues |
Representative Sequence | MATTEEKTELVETLKGPRFYRIQLNGYGGESAYMTISKEA |
Number of Associated Samples | 117 |
Number of Associated Scaffolds | 138 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 97.08 % |
% of genes near scaffold ends (potentially truncated) | 97.83 % |
% of genes from short scaffolds (< 2000 bps) | 88.41 % |
Associated GOLD sequencing projects | 106 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.31 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (76.812 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (31.159 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.058 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (94.203 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 16.18% β-sheet: 11.76% Coil/Unstructured: 72.06% | Feature Viewer |
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Powered by Feature Viewer |
Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 138 Family Scaffolds |
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PF08534 | Redoxin | 23.91 |
PF13759 | 2OG-FeII_Oxy_5 | 17.39 |
PF00795 | CN_hydrolase | 1.45 |
PF00211 | Guanylate_cyc | 1.45 |
PF00383 | dCMP_cyt_deam_1 | 1.45 |
PF16861 | Carbam_trans_C | 1.45 |
PF00156 | Pribosyltran | 1.45 |
PF01192 | RNA_pol_Rpb6 | 0.72 |
PF02801 | Ketoacyl-synt_C | 0.72 |
PF05257 | CHAP | 0.72 |
PF00730 | HhH-GPD | 0.72 |
PF02617 | ClpS | 0.72 |
PF13640 | 2OG-FeII_Oxy_3 | 0.72 |
PF11750 | DUF3307 | 0.72 |
COG ID | Name | Functional Category | % Frequency in 138 Family Scaffolds |
---|---|---|---|
COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 1.45 |
COG0122 | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Replication, recombination and repair [L] | 0.72 |
COG0177 | Endonuclease III | Replication, recombination and repair [L] | 0.72 |
COG1059 | Thermostable 8-oxoguanine DNA glycosylase | Replication, recombination and repair [L] | 0.72 |
COG1194 | Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs | Replication, recombination and repair [L] | 0.72 |
COG1758 | DNA-directed RNA polymerase, subunit K/omega | Transcription [K] | 0.72 |
COG2127 | ATP-dependent Clp protease adapter protein ClpS | Posttranslational modification, protein turnover, chaperones [O] | 0.72 |
COG2231 | 3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily | Replication, recombination and repair [L] | 0.72 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 76.81 % |
All Organisms | root | All Organisms | 23.19 % |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 31.16% |
Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 19.57% |
Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 8.70% |
Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 5.80% |
Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 5.07% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 3.62% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 2.90% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 2.17% |
Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 2.17% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 2.17% |
Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 2.17% |
Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 2.17% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 2.17% |
Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 2.17% |
Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 2.17% |
Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 1.45% |
Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 1.45% |
Marine | Environmental → Aquatic → Marine → Inlet → Unclassified → Marine | 0.72% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.72% |
Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 0.72% |
Marine | Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine | 0.72% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
---|---|---|---|
3300000864 | Marine plume microbial communities from the Columbia River - Metatranscriptome 25 PSU | Environmental | Open in IMG/M |
3300000930 | Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m | Environmental | Open in IMG/M |
3300001349 | Pelagic Microbial community sample from North Sea - COGITO 998_met_10 | Environmental | Open in IMG/M |
3300001948 | Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012 | Environmental | Open in IMG/M |
3300002136 | M2t6FKB1 (104f) | Environmental | Open in IMG/M |
3300003410 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA | Environmental | Open in IMG/M |
3300003592 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA | Environmental | Open in IMG/M |
3300003617 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA | Environmental | Open in IMG/M |
3300003621 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA | Environmental | Open in IMG/M |
3300005942 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 | Environmental | Open in IMG/M |
3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
3300007681 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 | Environmental | Open in IMG/M |
3300007692 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 | Environmental | Open in IMG/M |
3300009024 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 | Environmental | Open in IMG/M |
3300009071 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 | Environmental | Open in IMG/M |
3300009079 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 | Environmental | Open in IMG/M |
3300009086 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 | Environmental | Open in IMG/M |
3300009436 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome | Environmental | Open in IMG/M |
3300009445 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 | Environmental | Open in IMG/M |
3300009476 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 | Environmental | Open in IMG/M |
3300009496 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 | Environmental | Open in IMG/M |
3300009507 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 | Environmental | Open in IMG/M |
3300009606 | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300013010 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA | Environmental | Open in IMG/M |
3300016776 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300016791 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
3300017719 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 | Environmental | Open in IMG/M |
3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
3300017771 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13 | Environmental | Open in IMG/M |
3300017949 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017952 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017956 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017957 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017962 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017986 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017991 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG | Environmental | Open in IMG/M |
3300018036 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018049 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018417 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018418 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018421 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018423 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018424 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018428 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300020054 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly) | Environmental | Open in IMG/M |
3300020055 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly) | Environmental | Open in IMG/M |
3300020166 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 | Environmental | Open in IMG/M |
3300020174 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly) | Environmental | Open in IMG/M |
3300020177 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly) | Environmental | Open in IMG/M |
3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
3300020274 | Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943) | Environmental | Open in IMG/M |
3300020438 | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) | Environmental | Open in IMG/M |
3300020469 | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) | Environmental | Open in IMG/M |
3300020810 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly) | Environmental | Open in IMG/M |
3300021364 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304 | Environmental | Open in IMG/M |
3300021365 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1 | Environmental | Open in IMG/M |
3300021379 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 | Environmental | Open in IMG/M |
3300021959 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D | Environmental | Open in IMG/M |
3300021961 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D | Environmental | Open in IMG/M |
3300021964 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D | Environmental | Open in IMG/M |
3300022200 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3) | Environmental | Open in IMG/M |
3300022927 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG | Environmental | Open in IMG/M |
3300022937 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG | Environmental | Open in IMG/M |
3300023084 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG | Environmental | Open in IMG/M |
3300023087 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG | Environmental | Open in IMG/M |
3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
3300023115 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG | Environmental | Open in IMG/M |
3300023119 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG | Environmental | Open in IMG/M |
3300023170 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG | Environmental | Open in IMG/M |
3300023176 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG | Environmental | Open in IMG/M |
3300023178 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG | Environmental | Open in IMG/M |
3300023273 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG | Environmental | Open in IMG/M |
3300024226 | Seawater microbial communities from Monterey Bay, California, United States - 81D | Environmental | Open in IMG/M |
3300024228 | Seawater microbial communities from Monterey Bay, California, United States - 41D | Environmental | Open in IMG/M |
3300024231 | Seawater microbial communities from Monterey Bay, California, United States - 43D | Environmental | Open in IMG/M |
3300024244 | Seawater microbial communities from Monterey Bay, California, United States - 125D_r | Environmental | Open in IMG/M |
3300024247 | Seawater microbial communities from Monterey Bay, California, United States - 36D_r | Environmental | Open in IMG/M |
3300024248 | Seawater microbial communities from Monterey Bay, California, United States - 48D_r | Environmental | Open in IMG/M |
3300024264 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG | Environmental | Open in IMG/M |
3300024291 | Seawater microbial communities from Monterey Bay, California, United States - 74D | Environmental | Open in IMG/M |
3300024294 | Seawater microbial communities from Monterey Bay, California, United States - 78D | Environmental | Open in IMG/M |
3300024296 | Seawater microbial communities from Monterey Bay, California, United States - 36D | Environmental | Open in IMG/M |
3300024313 | Seawater microbial communities from Monterey Bay, California, United States - 29D | Environmental | Open in IMG/M |
3300024319 | Seawater microbial communities from Monterey Bay, California, United States - 85D | Environmental | Open in IMG/M |
3300024329 | Seawater microbial communities from Monterey Bay, California, United States - 39D | Environmental | Open in IMG/M |
3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
3300024417 | Seawater microbial communities from Monterey Bay, California, United States - 62D | Environmental | Open in IMG/M |
3300024420 | Seawater microbial communities from Monterey Bay, California, United States - 40D | Environmental | Open in IMG/M |
3300024508 | Seawater microbial communities from Monterey Bay, California, United States - 77D | Environmental | Open in IMG/M |
3300025083 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025483 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025617 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025621 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes) | Environmental | Open in IMG/M |
3300025641 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) | Environmental | Open in IMG/M |
3300025658 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025695 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025701 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025840 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025870 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025879 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025880 | Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes) | Environmental | Open in IMG/M |
3300026470 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 73R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300026483 | Seawater microbial communities from Monterey Bay, California, United States - 23D | Environmental | Open in IMG/M |
3300027190 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 (SPAdes) | Environmental | Open in IMG/M |
3300027753 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes) | Environmental | Open in IMG/M |
3300027757 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) | Environmental | Open in IMG/M |
3300027833 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) | Environmental | Open in IMG/M |
3300028126 | Seawater microbial communities from Monterey Bay, California, United States - 60D | Environmental | Open in IMG/M |
3300028133 | Seawater microbial communities from Monterey Bay, California, United States - 10D | Environmental | Open in IMG/M |
3300028196 | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m | Environmental | Open in IMG/M |
3300028414 | Seawater microbial communities from Monterey Bay, California, United States - 33D | Environmental | Open in IMG/M |
3300028416 | Seawater microbial communities from Monterey Bay, California, United States - 15D | Environmental | Open in IMG/M |
3300031569 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2 | Environmental | Open in IMG/M |
3300031660 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
OpTDRAFT_10141651 | 3300000864 | Freshwater And Marine | MATSEEKTELVEQIKGPRFYSIQVSGYGGESAYMTITKEAHDFW |
BpDRAFT_101490707 | 3300000930 | Freshwater And Marine | MATSEEKTELVEELKGPRFYNITLNGYGGESAYMTI |
JGI20160J14292_102434762 | 3300001349 | Pelagic Marine | MATTEQKTELVETLKGPRYYRVRLWGYGGEAAYMNVNKETYDFWKPIT |
GOS2228_10096281 | 3300001948 | Marine | MPYTAEENQELVDHIKGPKYYRIQLWGYGGESAYIPLNET |
M2t6FKB1_15528854 | 3300002136 | Marine | MATSEEKQELLEDIKRPVRHYRIMLWGYGGENSYIRLTKEQ |
JGI26086J50260_10411111 | 3300003410 | Marine | MATTEEKTELVETLKGPRYYRIQLWGYGGEAEYMDLTKEQ |
JGI26246J51724_10128791 | 3300003592 | Marine | MATTEEKTELVETLKGPRFXNXQLNGYGGESAYMTITKEAHDFWHP |
JGI26082J51739_101621791 | 3300003617 | Marine | MATSEEKTELVEELKGPRFYNITLNGYGGESAYMTISKEA |
JGI26083J51738_100421041 | 3300003621 | Marine | MATTEEKTELVETLKGPRYYRVRLWGYGGEAAYMNINKETYDFWN |
Ga0070742_100405003 | 3300005942 | Estuarine | MATTEEKTELVETLKGPRFYNIQLNGYGGESAYMTITKEAHDFW |
Ga0070754_103291602 | 3300006810 | Aqueous | MATTEEKTELVETLKGPRFYRIQLWGYGGEAAYIP |
Ga0102824_12146572 | 3300007681 | Estuarine | MATSEEKTELVEQIKGPRFYSIQVSGYGGESAYMTITK |
Ga0102823_11388993 | 3300007692 | Estuarine | MATTEEKTELVETLRGPRFYNIQLNGYGGESAYMTITKEAHDF |
Ga0102811_14281362 | 3300009024 | Estuarine | MATTEEKTELVETLKGPRFYRIMLWGYGGEAEYMELTKEQFEFWHA |
Ga0115566_101908103 | 3300009071 | Pelagic Marine | MATTEEKQELVETLKGPRYYRVRLWGYGGEAAYMNVNKETYDFWKPITEEH |
Ga0102814_104553581 | 3300009079 | Estuarine | MATSEEKTELVETLKGPRFYRISLWGYGGEAAYMN |
Ga0102812_107487542 | 3300009086 | Estuarine | MATSEEKTELVETLKGPRYYHIQLWGYGGESEYMDLT |
Ga0115008_101052441 | 3300009436 | Marine | MENKMATTEEKVELVEAIKGPRFYNISLTGYGGESAYMTITKEAHDFW |
Ga0115553_11621371 | 3300009445 | Pelagic Marine | MATTEEKTELVETLKGPRFYRIQLWGYGGEAEYMDLTKEQYEFWH |
Ga0115555_13850042 | 3300009476 | Pelagic Marine | MATTEEKQELVETLKGPKFYHITLNGYGGESAYMSISKE |
Ga0115570_100651154 | 3300009496 | Pelagic Marine | MATSEEKTELVETLKGPRYYKISLWGYGGESAYFNVSKEVHDFWKPICEEHG |
Ga0115572_104618031 | 3300009507 | Pelagic Marine | MATTEEKTELVETLKGPRYYRIQLWGYGGEAEYMHLTKEQYEF |
Ga0115102_107806911 | 3300009606 | Marine | MATSEEKTELVEAIKGPRFYRISLWGYGGEAAYMNLTKEAFDFWHKDTEENGE |
Ga0129327_100636511 | 3300013010 | Freshwater To Marine Saline Gradient | MATTEEKTELVETLKGPRFYRIRLWGYGGEAAYINISKAAHDFWHKHCETHG |
Ga0129327_106276812 | 3300013010 | Freshwater To Marine Saline Gradient | MATPEEKTELVETLKGPRYYRIQLNGYGGESAYMSISKAAHD |
Ga0182046_12056741 | 3300016776 | Salt Marsh | MATSEEKQELVEDLKGPRYYRITLSGYGGEIGYFGLTEKQYKYW |
Ga0182095_19040192 | 3300016791 | Salt Marsh | MATTEEKTELVETLKGPRYYRILIQGYGGESAYMSISKEA |
Ga0180120_101117301 | 3300017697 | Freshwater To Marine Saline Gradient | MATTEEKTELVETLKGPRYYRIRLWGYGGEAAYTNINIETKGFCKP |
Ga0180120_103142342 | 3300017697 | Freshwater To Marine Saline Gradient | MATSEEKTELVETLKGPRYYKISLWGYGGESAYFNVSKEVHDFWQPICEEH |
Ga0181390_10746481 | 3300017719 | Seawater | MATTEEKTELVETLKGPRFYRIMLWGYGGEAAYIPLNKEQYDF |
Ga0181392_10729591 | 3300017749 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKEAHDFWQPL |
Ga0181425_11530652 | 3300017771 | Seawater | MTEEYTSEENKELVETLKGPRFYRIMLWGYGGEAEYMELTKEQFDFWHFYNEEYGDSDGVNYCTS |
Ga0181584_100986785 | 3300017949 | Salt Marsh | MATSEEKQETIDVLKGERYFRVMISGYGGEAAYMSITKEAHDFW |
Ga0181583_101362864 | 3300017952 | Salt Marsh | MATLEEKEELVETIKGPRYYRICISGYGGEGAYISITKEAHDFWKDVTEEHG |
Ga0181580_103320933 | 3300017956 | Salt Marsh | MATSEEKQETVDVLKGERYYRVMISGYGGEAAYMSISK |
Ga0181571_102244951 | 3300017957 | Salt Marsh | MATSEEKQELVEQLKGPRYYRIQLWGYGGEAEYMELTKNQYEF |
Ga0181581_102691953 | 3300017962 | Salt Marsh | MATTEEKQELIEKIKGPRYYRVSITGYGGESAYMSITKEAHDFWKE |
Ga0181581_103217801 | 3300017962 | Salt Marsh | MATTEEKQELVEELKGPRFYRVTINGYGGEAAYMSI |
Ga0181569_108972501 | 3300017986 | Salt Marsh | MATSEEHQETIDALKGERFYRIQLWGYGGEAEYMDLTKEQYEFWSKHIEEHGD |
Ga0180434_108449762 | 3300017991 | Hypersaline Lake Sediment | MTTVTDEQKEELVDAIKGPRYYRVVVNGYGGEASYMKISQEAHDF |
Ga0181600_103977351 | 3300018036 | Salt Marsh | MATTEEKKELVDQLSGPRYYRVLIQGYGGEAAYMSITKEAH |
Ga0181601_100473321 | 3300018041 | Salt Marsh | MATSIEKQELVETLKGPHYYRIRIWGYGGESWYMKI |
Ga0181601_106080431 | 3300018041 | Salt Marsh | VTKMATTEEKTELVETLKGPRFYRIQLWGYGGESAYINVSKEVHDF |
Ga0181572_105743873 | 3300018049 | Salt Marsh | MATKEEKQELVETIKGPRFYRIQLWGYGGEAEYMDLTKEQYEFWNNHIEEY |
Ga0181572_105891272 | 3300018049 | Salt Marsh | MATSEEHQETIDALKGERFYRIQLWGYGGESEYMDLT |
Ga0181558_102229913 | 3300018417 | Salt Marsh | MATSEEKTELVETLKGPRFYRIMLWGYGGESEYMELTKEQYEFW |
Ga0181567_102488033 | 3300018418 | Salt Marsh | MATTEEKQELIEKIKGPRYYRVSITGYGGESAYMSITKEAHDFWK |
Ga0181563_100577951 | 3300018420 | Salt Marsh | MATSEEKTELVETLKGPRFYRIMLWGYGGESEYMELTKEQYEFWNSHNEEHGDG |
Ga0181592_107356412 | 3300018421 | Salt Marsh | MATLEEKEELVETIKGPRYYRICISGYGGEGAYISITK |
Ga0181593_106983352 | 3300018423 | Salt Marsh | MATTEEKTELVETIKGPRYYRICISGYGGEAAYISITKEAHDFWK |
Ga0181591_102161271 | 3300018424 | Salt Marsh | MATSEEKQETVDVLKGERYYRVMISGYGGEAAYMSISKE |
Ga0181591_102407273 | 3300018424 | Salt Marsh | MATLEEKEELVETIKGPRYYRICISGYGGEGAYISITKEAHDFWK |
Ga0181591_103958381 | 3300018424 | Salt Marsh | MATTQEKEELVETIKGPRYYRICISGYGGEGAYISITKEAHDFWK |
Ga0181568_111636122 | 3300018428 | Salt Marsh | MATSEEKQELVDNIKGPRYYRVLISGYGGESAYMSINKEAHDFWK |
Ga0181568_113119281 | 3300018428 | Salt Marsh | MASTEEKTELVETIKGPRYYRICISGYGGEAAYISITKEAHD |
Ga0181594_103615712 | 3300020054 | Salt Marsh | MATTQEKEELVETIKGPRYYRICISGYGGEGAYIS |
Ga0181575_104096511 | 3300020055 | Salt Marsh | MATTEEKQELVDALSGPRFYRIQLWGYGGEAEYMDLTKEQYEFWSAHIE |
Ga0206128_11963911 | 3300020166 | Seawater | MATSEEKTELVETLKGPRYYKIQLYGYGGESAYINVSKDVHDFWKPICEEHGG |
Ga0181603_102934841 | 3300020174 | Salt Marsh | MATTEEKTELVETLKGPRFYRIQLWGYGGESAYINVSKEVHDFWQP |
Ga0181596_101719391 | 3300020177 | Salt Marsh | MATSEEKTELVETLKGPRFYRIMLWGYGGESEYMELTKEQYEFWN |
Ga0206131_100546051 | 3300020185 | Seawater | MSTHTSEQNKALVETLKGPRYYRIQLWGYGGEAEYMHLTKEQYEFWHAHIEEHGD |
Ga0211658_10915142 | 3300020274 | Marine | MATSEEKQELVEELKGPRFYHVTISGYGGESAYMSINKEAFEFWNPITEE |
Ga0211576_100261731 | 3300020438 | Marine | MATTAEKEELVETLKGPRFYRIMLWGYGGEAEYLKLTKAQYEFWHNHI |
Ga0211576_105355621 | 3300020438 | Marine | MATTEEKTELVETLKGPRFYRIMLWGYGGEAAYIPLNKEQYDFWKAHTEEH |
Ga0211577_105274362 | 3300020469 | Marine | MATTAEKEELVETLKGPRFYRIMLWGYGGEAEYLKL |
Ga0181598_10348701 | 3300020810 | Salt Marsh | MATSEEKTELVETLKGPRFYRIMLWGYGGESEYMELTKEQYEFWNSHNE |
Ga0181598_12919802 | 3300020810 | Salt Marsh | MATSEEKQELVDALSGPRYYRVLIQGYGGEAAYMGISKEAYEYWKPH |
Ga0213859_101176434 | 3300021364 | Seawater | MSKYTKEENEELVATLKGPRFYRISIGGYGGESEYIKLTKEQFDFWNNHIEEYGDGDVVNYCV |
Ga0213859_102297503 | 3300021364 | Seawater | MATSEEKQELVETLKGPRYYRVQLWGYGGEAAYLNLSKEAYEF |
Ga0213859_103695053 | 3300021364 | Seawater | MSEFTTEENQELIDKIKGPRYFRVHIQGYGGESAYMSNSKK |
Ga0206123_101316143 | 3300021365 | Seawater | MATSEEKTELVETLKGPRYYRIMLWGYGGEAAYMPLNKAQYEFWNSHNQ |
Ga0213864_101894944 | 3300021379 | Seawater | MTYTSEENQELVETIKGPRYYRIHISGYGGEAAYMSITKEAHDFWSQV |
Ga0213864_104589103 | 3300021379 | Seawater | MATKEEMQETIETLKGPRYYRIQLWGYGGEAEYMELTKEQHDF |
Ga0222716_101047832 | 3300021959 | Estuarine Water | MATSEEKQETVDMLKGERYYRIQLNGYGGEAAYINLTKEAYKF |
Ga0222714_105745881 | 3300021961 | Estuarine Water | MATPEEKQELVDNLKGKRYYRFSLWGYGGESAYINLNKEQYDFWK |
Ga0222719_102759863 | 3300021964 | Estuarine Water | MATTEEKTELVETLKGPRFYRIQLWGYGGEAAYIPLNKE |
Ga0196901_12746873 | 3300022200 | Aqueous | MATSEEKQETVDALKGERYYRVLIQGYGGEAAYMS |
Ga0255769_101855873 | 3300022927 | Salt Marsh | MATTEEKTELVETLKGPRFYRIQLWGYGGESAYINVSK |
Ga0255770_101241681 | 3300022937 | Salt Marsh | MATKEEMHETIETLKGPRFYRIQFYGYGGEAEYMKLTKEQYEFWKEQI |
Ga0255770_101519751 | 3300022937 | Salt Marsh | MATTEEKQETIDALKGQRYFRIYLNGYGGEAAYIN |
Ga0255770_102432281 | 3300022937 | Salt Marsh | MATLEEKEELVETIKGPRYYRICISGYGGEGAYIS |
Ga0255778_101528741 | 3300023084 | Salt Marsh | MATSEEKQEIVDHLSGPRYYRITINGYGGEGAYMSISKEA |
Ga0255774_104923721 | 3300023087 | Salt Marsh | MATSEEKQELVEQLKGPRYYRIQLWGYGGEAEYMELTK |
(restricted) Ga0233432_100300377 | 3300023109 | Seawater | MATTEEKTELVETLKGPRFYNIQLNGYGGESAYMTVSKEAH |
(restricted) Ga0233432_102413241 | 3300023109 | Seawater | MATPEEKTELVETLKGPRFYRIMLSGYGGESAYMGISKAAHDFWSAHTEE |
Ga0255760_101167345 | 3300023115 | Salt Marsh | MATKEEMHETIETLKGPRFYRIQFYGYGGEAEYMKLTKEQYEFWKEQIDENGDG |
Ga0255760_101483581 | 3300023115 | Salt Marsh | MATSEEKQELVETLKGPRYYRIMIWGYGGESAYIPLNEP |
Ga0255762_101398771 | 3300023119 | Salt Marsh | MATTEEKQELVDALSGPRFYRIQLWGYGGEAEYMDLTKEQYEFWS |
Ga0255761_103779543 | 3300023170 | Salt Marsh | MATKEEMHETIETLKGPRFYRIQFYGYGGEAEYMKLTKEQYEF |
Ga0255772_101118715 | 3300023176 | Salt Marsh | MATPEEKQELVDNLKGKRFYRIGLWGYGGESAYINLNKDQFEF |
Ga0255759_104072991 | 3300023178 | Salt Marsh | MATTEEKQELIEKIKGPRYYRVSITGYGGESAYMSITKEA |
Ga0255763_10542371 | 3300023273 | Salt Marsh | MATTEEKTELVETLKGPRFYRIQLWGYGGESAYINVSKAVHDFWQPICE |
Ga0228667_10988071 | 3300024226 | Seawater | MADVKEKQEIVDTLKGPRYYRISLKGYGGESAYMSISKEA |
Ga0228633_10711971 | 3300024228 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISE |
Ga0233399_10523851 | 3300024231 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKEAHDF |
Ga0228678_10647872 | 3300024244 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISEKA |
Ga0228678_10718123 | 3300024244 | Seawater | MATTEEKTELVETLKGPRFYRIQLNGYGGESAYMTISKEA |
Ga0228675_10097897 | 3300024247 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKEAHDFWQPLCEEHGDY |
Ga0228676_11088941 | 3300024248 | Seawater | MATTEEKTELVETLKGPRFYRIMLWGYGGEAAYIPLNKDQYDFWKAHTEEHY |
(restricted) Ga0233444_100731383 | 3300024264 | Seawater | MATTEEKEELVETLKGPRFYNIQLNGYGGESAYMTVSKEA |
Ga0228660_10339251 | 3300024291 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSIS |
Ga0228664_10902172 | 3300024294 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKEAHDFW |
Ga0228629_12034372 | 3300024296 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISEKAHDFWEPICE |
Ga0228624_10443682 | 3300024313 | Seawater | MATSEEKQELVETLKGPRFYNIQLNGYGGESAYMTVSKESHDFWQ |
Ga0228670_10180515 | 3300024319 | Seawater | MATSEEKQELVETLKGPRFYNIQLNGYGGESAYMTVSKE |
Ga0228631_10261235 | 3300024329 | Seawater | MATSEEKQELVETLKGPRFYNIQLNGYGGESAYMTVSK |
Ga0244775_103643403 | 3300024346 | Estuarine | MSTHTSEQNKALVETLKGPRFYRIRLWGYGGEAAYINISKAAHDFWHKH |
Ga0244775_108294763 | 3300024346 | Estuarine | MATTEEKTELVETLKGPRFYNIQLNGYGGESAYMTVSK |
Ga0228650_11897001 | 3300024417 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKEAHDFWQPLC |
Ga0228632_11492781 | 3300024420 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISEKAH |
Ga0228663_11045741 | 3300024508 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISEKAHD |
Ga0208791_10526201 | 3300025083 | Marine | MATTEEKTELVETLKGPRYYRINISGYGGESAYMSISKEAFEFWNDICD |
Ga0209557_10470251 | 3300025483 | Marine | MATTEEKTELVETLKGPRFYNIQLNGYGGESAYMTVS |
Ga0209138_11168982 | 3300025617 | Marine | MATTEEKQELVETLKGPRFYNIQLNGYGGESAYMTITKEAHDFWQPI |
Ga0209504_11176841 | 3300025621 | Pelagic Marine | MATTEEKQELVETLKGPRYYRVRLWGYGGEAAYMNINK |
Ga0209833_10939691 | 3300025641 | Pelagic Marine | MATTEQKTELVETLKGPRYYRVRLWGYGGEAAYMNVNKETYDFWKPITEENG |
Ga0209659_11458783 | 3300025658 | Marine | MATTEEKTELVETLKGPRFYRIMLWGYGGEAAYMPLNKAQYEFWHS |
Ga0209653_11498901 | 3300025695 | Marine | MATTEEKTELVETLKGPRFYRIQLNGYGGESAYMGISK |
Ga0209771_11413301 | 3300025701 | Marine | MATTEEKVELVETLKGPRFYNIQLNGYGGESAYMTITKEAHDFWQPICEEH |
Ga0208917_11104223 | 3300025840 | Aqueous | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSI |
Ga0209666_13527772 | 3300025870 | Marine | MATTEEKTELVETLKGPRFYNIQLNGYGGESAYMTVSKE |
Ga0209555_100026821 | 3300025879 | Marine | MATTEEKTELVETLKGPRYYRVRLWGYGGEAAYMNINKET |
Ga0209534_102276592 | 3300025880 | Pelagic Marine | MATTEEKTELVETLKGPRYYRVRLWGYGGEAAYMNINKETYDFWKPVTEEHGD |
Ga0247599_10267254 | 3300026470 | Seawater | MATTEEKTELVETLKGPRFYRITLTGYGGESAYMSITKEAHDFWQPICEEH |
Ga0228620_11206132 | 3300026483 | Seawater | MATTEEKQELVEQIKGPRFYRVQLNGYGGESAYMTITKEAHDF |
Ga0208674_10143284 | 3300027190 | Estuarine | MATSEEKTELVETLKGPRYYNITLNGYGGESAYMTISK |
Ga0208305_102826121 | 3300027753 | Estuarine | MTEYTSEENKELVETIKGPRFYRLTLWGYGGESAYINLTKEAYEFW |
Ga0208671_103436751 | 3300027757 | Estuarine | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTIT |
Ga0209092_100540651 | 3300027833 | Marine | MATTEEKTELVETLKGPRFYRIRLYGYGGEAAYINLTKEAYDFWHNHTEEHY |
Ga0228648_10142403 | 3300028126 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMSISEKAHDFWKSVCED |
Ga0228609_11530271 | 3300028133 | Seawater | MATTEEKTELVETIKGPRFYRIQLNGYGGESAYMS |
Ga0257114_10792881 | 3300028196 | Marine | MATSEEKTELVETIKGPRFYRLTINGYGGEGAYINI |
Ga0228627_10775483 | 3300028414 | Seawater | MADVKEKQEIVDTLKGPRYYRISLNGYGGESAYMSISKEAY |
Ga0228614_10796652 | 3300028416 | Seawater | MATTEEKTELVEAIKGPRFYNIQLNGYGGESAYMTITKE |
Ga0307489_100407031 | 3300031569 | Sackhole Brine | MATTEEKTELVETLKGPRFYSIRLYGYGGEGAYINIGKEAYDFWHKHNEE |
Ga0307489_101313601 | 3300031569 | Sackhole Brine | MATTEEKVELVETLKGPRFYSIRLYGYGGEGAYINIGKEAYDFWHKHNEE |
Ga0307489_107701381 | 3300031569 | Sackhole Brine | MATTEEKQETIEALKGPRFYRLTISGYGGEGAYINI |
Ga0307994_11159651 | 3300031660 | Marine | MATSEEKTELVETLKGLRFYNIKLNGYGGESAYMSISKEA |
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