Metagenome Family F055798

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055798
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	42 residues
Representative Sequence	FIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTRALFVD
Number of Associated Samples	114
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.10 %
% of genes from short scaffolds (< 2000 bps)	92.03 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.652 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.841 % of family members)
Environment Ontology (ENVO)	Unclassified (31.159 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.072 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.06% β-sheet: 0.00% Coil/Unstructured: 52.94%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF07690	MFS_1	5.07
PF00854	PTR2	4.35
PF01451	LMWPc	2.90
PF00557	Peptidase_M24	2.17
PF12275	DUF3616	2.17
PF00365	PFK	1.45
PF00211	Guanylate_cyc	1.45
PF13414	TPR_11	1.45
PF13181	TPR_8	1.45
PF07719	TPR_2	1.45
PF04255	DUF433	0.72
PF01436	NHL	0.72
PF01979	Amidohydro_1	0.72
PF08239	SH3_3	0.72
PF00155	Aminotran_1_2	0.72
PF13602	ADH_zinc_N_2	0.72
PF13174	TPR_6	0.72
PF01965	DJ-1_PfpI	0.72
PF01510	Amidase_2	0.72
PF00857	Isochorismatase	0.72
PF00171	Aldedh	0.72
PF02913	FAD-oxidase_C	0.72
PF00126	HTH_1	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	4.35
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	1.45
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.45
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.72
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.72
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.72
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.72
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.72
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.65 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.65 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.65 %
Unclassified	root	N/A	4.35 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	44.93 %
Unclassified	root	N/A	4.35 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	44.93 %
Unclassified	root	N/A	4.35 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.72 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.72 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	42.75 %
Unclassified	root	N/A	4.35 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.72 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.72 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.75 %
Unclassified	root	N/A	4.35 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.72 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.75 %
Unclassified	root	N/A	4.35 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.72 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.72 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.75 %
Unclassified	root	N/A	4.35 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	0.72 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.72 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.75 %
Unclassified	root	N/A	4.35 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	0.72 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	0.72 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.72 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02GMC2J	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
2170459010\|GIO7OMY02H3G2V	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300000955\|JGI1027J12803_106410557	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300004463\|Ga0063356_104686079	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005166\|Ga0066674_10091185	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300005166\|Ga0066674_10271568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	800	Open in IMG/M
3300005175\|Ga0066673_10438018	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767	Open in IMG/M
3300005181\|Ga0066678_10245908	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300005187\|Ga0066675_10496765	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005289\|Ga0065704_10238076	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300005290\|Ga0065712_10005592	All Organisms → cellular organisms → Bacteria	2822	Open in IMG/M
3300005354\|Ga0070675_100281157	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300005364\|Ga0070673_100440738	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300005437\|Ga0070710_10089122	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300005445\|Ga0070708_100675560	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005451\|Ga0066681_10020047	All Organisms → cellular organisms → Bacteria	3414	Open in IMG/M
3300005456\|Ga0070678_102172003	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005457\|Ga0070662_101479044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300005540\|Ga0066697_10583323	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005544\|Ga0070686_101331850	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005553\|Ga0066695_10778555	Not Available	554	Open in IMG/M
3300005554\|Ga0066661_10209949	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300005576\|Ga0066708_11046197	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005598\|Ga0066706_11385672	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005764\|Ga0066903_100252489	All Organisms → cellular organisms → Bacteria	2723	Open in IMG/M
3300005764\|Ga0066903_101050165	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300005764\|Ga0066903_106903830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300005844\|Ga0068862_102436278	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006031\|Ga0066651_10197429	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300006031\|Ga0066651_10729537	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300006034\|Ga0066656_10053784	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300006046\|Ga0066652_100284206	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300006046\|Ga0066652_101484274	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300006237\|Ga0097621_101657335	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300006796\|Ga0066665_10968240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300006796\|Ga0066665_11155487	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300006871\|Ga0075434_101615331	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300007255\|Ga0099791_10150057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1088	Open in IMG/M
3300007788\|Ga0099795_10322679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300009089\|Ga0099828_10313956	All Organisms → cellular organisms → Bacteria → Proteobacteria	1411	Open in IMG/M
3300009098\|Ga0105245_13252479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300009137\|Ga0066709_103315208	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300010038\|Ga0126315_11102987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300010047\|Ga0126382_10280351	Not Available	1240	Open in IMG/M
3300010047\|Ga0126382_11589722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300010048\|Ga0126373_11884377	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300010321\|Ga0134067_10370761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300010322\|Ga0134084_10038992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1361	Open in IMG/M
3300010323\|Ga0134086_10082516	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300010329\|Ga0134111_10160293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	894	Open in IMG/M
3300010366\|Ga0126379_11212246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300010366\|Ga0126379_11557281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300010366\|Ga0126379_13192683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	549	Open in IMG/M
3300010366\|Ga0126379_13317386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300010373\|Ga0134128_12628513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300010376\|Ga0126381_103506076	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010398\|Ga0126383_12082881	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300010868\|Ga0124844_1054301	Not Available	1421	Open in IMG/M
3300011119\|Ga0105246_10249749	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300012198\|Ga0137364_10376279	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300012202\|Ga0137363_10819108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	790	Open in IMG/M
3300012205\|Ga0137362_10230936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1596	Open in IMG/M
3300012208\|Ga0137376_10232369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1598	Open in IMG/M
3300012208\|Ga0137376_10850963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	784	Open in IMG/M
3300012210\|Ga0137378_11247871	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300012285\|Ga0137370_10022866	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300012285\|Ga0137370_10808498	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300012285\|Ga0137370_11040758	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300012357\|Ga0137384_10035365	All Organisms → cellular organisms → Bacteria	4110	Open in IMG/M
3300012360\|Ga0137375_10603732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	913	Open in IMG/M
3300012361\|Ga0137360_10954541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300012683\|Ga0137398_10701770	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300012685\|Ga0137397_10295547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1207	Open in IMG/M
3300012901\|Ga0157288_10101310	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300012906\|Ga0157295_10153730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300012914\|Ga0157297_10366570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300012917\|Ga0137395_10655269	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012922\|Ga0137394_11033523	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012925\|Ga0137419_11155373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300012930\|Ga0137407_10391238	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1286	Open in IMG/M
3300012948\|Ga0126375_10473262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	927	Open in IMG/M
3300012948\|Ga0126375_10584678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	850	Open in IMG/M
3300012971\|Ga0126369_12139771	Not Available	647	Open in IMG/M
3300012975\|Ga0134110_10076059	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300012976\|Ga0134076_10016321	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300012985\|Ga0164308_10358238	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1179	Open in IMG/M
3300012986\|Ga0164304_11709555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300012987\|Ga0164307_10493145	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300014166\|Ga0134079_10475514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300014166\|Ga0134079_10687749	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300014325\|Ga0163163_12134935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300014968\|Ga0157379_12366595	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300015359\|Ga0134085_10224931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300015372\|Ga0132256_100364442	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300015372\|Ga0132256_100809958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1053	Open in IMG/M
3300016371\|Ga0182034_11694824	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300018054\|Ga0184621_10339693	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300018071\|Ga0184618_10177326	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300018433\|Ga0066667_10425630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1079	Open in IMG/M
3300018433\|Ga0066667_11118613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300018433\|Ga0066667_11517400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300018468\|Ga0066662_10230198	Not Available	1495	Open in IMG/M
3300018482\|Ga0066669_10224702	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1461	Open in IMG/M
3300019876\|Ga0193703_1002076	All Organisms → cellular organisms → Bacteria	2889	Open in IMG/M
3300019879\|Ga0193723_1193694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300019886\|Ga0193727_1107170	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	816	Open in IMG/M
3300019886\|Ga0193727_1163323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300020002\|Ga0193730_1039393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1369	Open in IMG/M
3300021086\|Ga0179596_10568877	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021344\|Ga0193719_10024017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2608	Open in IMG/M
3300021560\|Ga0126371_10877947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1041	Open in IMG/M
3300021560\|Ga0126371_12958392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300022756\|Ga0222622_10057877	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300022898\|Ga0247745_1042384	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	704	Open in IMG/M
3300023058\|Ga0193714_1060522	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300025552\|Ga0210142_1117785	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300025906\|Ga0207699_11375048	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300025938\|Ga0207704_10670581	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300026307\|Ga0209469_1045514	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300026307\|Ga0209469_1054318	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300026308\|Ga0209265_1114621	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300026309\|Ga0209055_1021887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3058	Open in IMG/M
3300026316\|Ga0209155_1155118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767	Open in IMG/M
3300026325\|Ga0209152_10277346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300026334\|Ga0209377_1280481	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300026524\|Ga0209690_1097705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1208	Open in IMG/M
3300026538\|Ga0209056_10200950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1459	Open in IMG/M
3300028379\|Ga0268266_10420383	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300028379\|Ga0268266_11410904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300028708\|Ga0307295_10031179	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1338	Open in IMG/M
3300028799\|Ga0307284_10113803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1022	Open in IMG/M
3300028878\|Ga0307278_10267987	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300031446\|Ga0170820_16387641	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300031474\|Ga0170818_114286101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300031681\|Ga0318572_10830893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300031941\|Ga0310912_10624262	Not Available	838	Open in IMG/M
3300031941\|Ga0310912_11341501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300032205\|Ga0307472_102237322	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.23%
Host-Associated	Host-Associated	13.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Plants	Host-Associated → Plants	13.77%
Aquatic	Environmental → Aquatic	2.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.35%
Sediment	Environmental → Aquatic → Sediment	2.17%
Roots	Host-Associated → Plants → Roots	1.45%
Marine	Environmental → Aquatic → Marine	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.09%
Loam	Environmental → Terrestrial → Soil → Loam	7.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.72%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.17%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.45%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_04151700	2170459010	Grass Soil	PCFIRPQRLFSVEQHVILHSVGKVTAAKYDEVFKKVRSLFH
F62_08310390	2170459010	Grass Soil	IGQPCFIRPQRLFSVEQHVILHSVGKVTAAKYDEVFKKVRSLFID
JGI1027J12803_1064105571	3300000955	Soil	GEIGQPCFIRPQRLFSVEQHVILYSVGKVTAAKFDEVFKKARALFVD*
Ga0063356_1046860792	3300004463	Arabidopsis Thaliana Rhizosphere	DQPCFIRPQRLFTVEQHVILGSVGKVTAEKFDEVFKKARALFVD*
Ga0066674_100911854	3300005166	Soil	FIRPQRLFTVEHHIILHSVGKVTAAKFDEVFKKARALFVD*
Ga0066674_102715681	3300005166	Soil	QPGFIRPQRLFTVEQHVIFHAVGKVTAEKFDEVFKKTRALFVD*
Ga0066673_104380182	3300005175	Soil	FIRPQRLFTVEQHVIFHAVGKVTAEKFDEVFKKTRALFVD*
Ga0066678_102459082	3300005181	Soil	FIRPQRLFTVEHHIILHSAGKVTAAKFDEVFKKARALFVD*
Ga0066675_104967651	3300005187	Soil	QPCFIRPQRLFTVEQHFILHSVGKVTAEKYDEVFKKVRGLFID*
Ga0065704_102380761	3300005289	Switchgrass Rhizosphere	GFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0065712_100055922	3300005290	Miscanthus Rhizosphere	LDQPCFIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKVRTLFID*
Ga0070675_1002811572	3300005354	Miscanthus Rhizosphere	DQPCFIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKVRTLFID*
Ga0070673_1004407381	3300005364	Switchgrass Rhizosphere	LDQPCFIRPQRLFTVEQHVIIRSVGKVTAAKYDEVFKKVRTLFID*
Ga0070710_100891223	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	QCFIRPQRLFTVDCRVILKSVGKVNAAKLDEVSVKVRELFS*
Ga0070708_1006755601	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IRPQRLFSVEQHVILHSVGKVTADKFDEVFKRVRGLLVD*
Ga0066681_100200471	3300005451	Soil	CFIRPQRLFSVEQHFILHSVGKVTTDKFDEVFKRVRGLLVD*
Ga0070678_1021720031	3300005456	Miscanthus Rhizosphere	CERGEIGQPCFIRPQRLFTVEQHVILHSVGKVTAEKYDEVFKKTRTLFID*
Ga0070662_1014790442	3300005457	Corn Rhizosphere	IGQPCFIRPQRLFTVEQRVCLKAIGKVTAEKFDEVFKRARSLFVD*
Ga0066697_105833232	3300005540	Soil	LDQPCFIRPQRLFTLEHHIILHSVGKVNAAKFDEVFKKVRGLLVD*
Ga0070686_1013318502	3300005544	Switchgrass Rhizosphere	IRPQRLFTVEQHVIIRSVGKVTAAKYDEVFKKVRTLFID*
Ga0066695_107785552	3300005553	Soil	MNANPQRLFTVEQHIILNSVGKVTAEKFDEMFKKVRGLLVD*
Ga0066661_102099493	3300005554	Soil	IRPQRLFTVEQHVILRSVGKVTAEKFDEVFKKARALFVD*
Ga0066708_110461971	3300005576	Soil	CFIRPQRLFTVEQHVILHSVGKVTSEKFDEVFKRVRGLFVD*
Ga0066706_113856721	3300005598	Soil	ERGEIDQPCFIRPQRLFTVEQHVILHSVGKVTSEKFDEVFKRMRGLFVD*
Ga0066903_1002524891	3300005764	Tropical Forest Soil	PQRLFTVEQHIILHSVGKVTAAKFDEVFKKTRALLVD*
Ga0066903_1010501651	3300005764	Tropical Forest Soil	ERGQIGRPCFIRPQRLFTVEQRVCLQSVGKVTAEKFDEVFKKARALFVD*
Ga0066903_1069038303	3300005764	Tropical Forest Soil	RLFTVEQRVCLQSVGKVSAEKFDEVFKKARALFVD*
Ga0068862_1024362782	3300005844	Switchgrass Rhizosphere	FIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKVRTLFID*
Ga0066651_101974291	3300006031	Soil	RLFTVEHHIILHSVGKVTAAKFHEVFKKTRALFID*
Ga0066651_107295371	3300006031	Soil	CFIRPQRLFSVEQHVILRSVGKVTTNKFDEVFKRVRGLFVD*
Ga0066656_100537845	3300006034	Soil	RLFTVEHHIILHSVGKVTAAKFDEVFNKARALFVD*
Ga0066652_1002842062	3300006046	Soil	CFIRPQRLFTVEQHVCLHSVGKVTAEKFDEVFKKVRGLLVD*
Ga0066652_1014842742	3300006046	Soil	GFIRPQRLFTVDYRVILKSVGKVNTVKLDEVLVKVRELFD*
Ga0097621_1016573352	3300006237	Miscanthus Rhizosphere	QRLFTVEQHVIIRSVGKVTAAKYDEVFKKVRTLFID*
Ga0066665_109682404	3300006796	Soil	LFTLEHHIILHSVGKVNAAKFDEVFKKARALFVD*
Ga0066665_111554872	3300006796	Soil	ERGEIGQPCFIRPQRLFTVEHHIILHSVGKVTAAKFDEVFKKARALFVD*
Ga0075434_1016153312	3300006871	Populus Rhizosphere	IDQPCVIRPQRLFTVEQHVILHSVGKVTAQKYDEVFKKVRGLFID*
Ga0099791_101500572	3300007255	Vadose Zone Soil	CFIRPQRLFNVEQHFILKSVGKVTPAKFDEVFKKARTLFVD*
Ga0099795_103226791	3300007788	Vadose Zone Soil	QLPQPGFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0099828_103139561	3300009089	Vadose Zone Soil	RPQRLFTVEHHTILSSIGKVQAAKLDEVLRKARAFFD*
Ga0105245_132524791	3300009098	Miscanthus Rhizosphere	LFTVEQHVILHSVGKVTAAKYDEVFKKVRTLFID*
Ga0066709_1033152082	3300009137	Grasslands Soil	VGKPCLIRQQRLFTVEQHVCLHSGGKVTAAKFDEVFKKARARLVD*
Ga0126315_111029871	3300010038	Serpentine Soil	GVDQPSFIRPQRLFTVEQHVILRSVGKVTAEKFDEVFKKTRTLFID*
Ga0126382_102803512	3300010047	Tropical Forest Soil	PKRLVAVEQRICLRSVGKVPAEKFDEVFKKARALFVD*
Ga0126382_115897222	3300010047	Tropical Forest Soil	LVTVEQNAILSWVGKVTAEKVDEVFKRVRGLVID*
Ga0126373_118843772	3300010048	Tropical Forest Soil	RPQRLFTIEQRVCLRSIGKVTAEKFDEVFKKARSLFVD*
Ga0134067_103707612	3300010321	Grasslands Soil	QRLFTVEQHVILHSVGKVTSEKFDEVFKRMRGLFVD*
Ga0134084_100389921	3300010322	Grasslands Soil	LFTVEQHVILHSVGKVTAQKFDEVFKKMRTLFVD*
Ga0134086_100825163	3300010323	Grasslands Soil	QIDKPCFIRPQRLFSVEQHVILHSVGKVTADKFDEVFKRVRGLLVD*
Ga0134111_101602932	3300010329	Grasslands Soil	MNANPQRLFTVEHHIILNSVSKVTAAKFDDVFKRVRALFVN*
Ga0126379_112122461	3300010366	Tropical Forest Soil	LFTVEQRVCLQSVGKVSAEKFDEVFKKARALFVD*
Ga0126379_115572812	3300010366	Tropical Forest Soil	GPCFIRPQRLFTVEQHIILHSVGKVTAAKFDEVFKKTRALLVD*
Ga0126379_131926831	3300010366	Tropical Forest Soil	IRPQRLFTVEQHVILHSVGKVVPEKFDEVFKKARALLID*
Ga0126379_133173862	3300010366	Tropical Forest Soil	GQLDQPCFIRPQRLFTVDQHVILHSVGKVTPGKLDEVFKKTRALLVD*
Ga0134128_126285131	3300010373	Terrestrial Soil	PQRLFTVEQHVILRTVGKVTAAKYDEVFKKTRTLFID*
Ga0126381_1035060762	3300010376	Tropical Forest Soil	LFTVDQHVILNSVGKVTAEKFDEVFKKARALFVD*
Ga0126383_120828812	3300010398	Tropical Forest Soil	QPCFIRAQRLFTVEQHVILSSVGKVTPQKFDEVFKKARALLVD*
Ga0124844_10543011	3300010868	Tropical Forest Soil	FIRPQRLFTVEQRIILHSVGKVSAEKFDEVFKKARALFVD*
Ga0105246_102497491	3300011119	Miscanthus Rhizosphere	GHPCFIRPQRLFTVEQHVILSSVGKVTAEKFDEVFKKTRTLFVD*
Ga0137364_103762792	3300012198	Vadose Zone Soil	VIAEFDKADRSQRLFTVEHHIILHSVGKVTAAKFHEVFKKTRALFID*
Ga0137363_108191081	3300012202	Vadose Zone Soil	CERGEIGQPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKVRTLFVD*
Ga0137362_102309361	3300012205	Vadose Zone Soil	RGQIDKPCFIRPQRLFSVEQHFILHSVGKVTTDKFDEVFKKVRGLLVD*
Ga0137376_102323693	3300012208	Vadose Zone Soil	IRPQRLFTVEQHVILRTVGKVTAAKYDEVFKKTRTLFID*
Ga0137376_108509632	3300012208	Vadose Zone Soil	IRPQRLFTVEQHVILRTVGKVTAAKYDEVFKKTRALFID*
Ga0137378_112478711	3300012210	Vadose Zone Soil	PGFIRPQRLFTVEHHIILNSVSKVTAAKFDDVFKRVRALFVN*
Ga0137370_100228661	3300012285	Vadose Zone Soil	LFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0137370_108084981	3300012285	Vadose Zone Soil	AEFDKADRSQRLFTVEHHIILHSVGKVTAAKFHEVFKKTRALFID*
Ga0137370_110407582	3300012285	Vadose Zone Soil	GFIRPQRLFTVEHHIILSTVGKVTAEKFDEVFKKARALFVD*
Ga0137384_100353651	3300012357	Vadose Zone Soil	LGQPCFIRPQRLFTVEHHIILSSIGKVQTAKLDEVLRKARAFFD*
Ga0137375_106037321	3300012360	Vadose Zone Soil	LFTLEHHIILHSVGKVNAAKFDEVFKKVRGLLVD*
Ga0137360_109545412	3300012361	Vadose Zone Soil	RPQRLFSVEHHIILHSVGKVTAEKFDEVFKKARALFVD*
Ga0137398_107017702	3300012683	Vadose Zone Soil	ERGQLDQPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0137397_102955471	3300012685	Vadose Zone Soil	RLFTVEQHVILHAVGKVTAEKFDEVFKKTRTLFVD*
Ga0157288_101013102	3300012901	Soil	ERGEIDQPCFIRPQRLFTVEQHVILQSVGKVTAVKYDEVFKKVRTLFID*
Ga0157295_101537301	3300012906	Soil	PQRLFTVEQHVIIRSVGKVTAAKYDEVFKKVRTLFID*
Ga0157297_103665701	3300012914	Soil	RLFTVEQHVIIHSMGKVTAAKYDEVFKKVRTLFID*
Ga0137395_106552691	3300012917	Vadose Zone Soil	QPCFIRPQRLFTVEHHIILSSIGKVQTAKLGEVLRKARAFFD*
Ga0137394_110335231	3300012922	Vadose Zone Soil	RLFTVEQHVILHSVGKVTSEKFDEVFKKTRTLFVD*
Ga0137419_111553731	3300012925	Vadose Zone Soil	IDQPCFIRPQRLFTVEQHVILHSMGKVTAAKYDEVFKKVRALFVD*
Ga0137407_103912382	3300012930	Vadose Zone Soil	PQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0126375_104732621	3300012948	Tropical Forest Soil	QRLFTVEQHIILQSIGKVTAEKFDEVFKKARALFVD*
Ga0126375_105846781	3300012948	Tropical Forest Soil	PCFIRPQRLFTVEQRIILHSVGKVSAEKFDEVFKKARALFVD*
Ga0126369_121397711	3300012971	Tropical Forest Soil	RFAQPSFIRPQRLFTVEQRVILYSIGKVKAAKMAEVLAKARALFS*
Ga0134110_100760591	3300012975	Grasslands Soil	PQRLFSVEQHVILHSVGKVTTEKFDEVFKRVRELFVD*
Ga0134076_100163214	3300012976	Grasslands Soil	GFIRPQRLFTVEHHIILSSVGKVTAAKFDEVFKKARALFVD*
Ga0164308_103582381	3300012985	Soil	IDHPCLIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0164304_117095551	3300012986	Soil	LFTVEQHVIFHSVEKVTAAKYDEVFKKVRTLFID*
Ga0164307_104931451	3300012987	Soil	CFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTRTLFVD*
Ga0134079_104755141	3300014166	Grasslands Soil	QLPQPGFIRSQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0134079_106877491	3300014166	Grasslands Soil	RLFSVEQHVILRSVGKVTAEKFDEVFKRVRGLFVD*
Ga0163163_121349351	3300014325	Switchgrass Rhizosphere	GGVGHPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD*
Ga0157379_123665951	3300014968	Switchgrass Rhizosphere	QLDGPCFIRPQRLFTVEQHLILRSVGKVTAEKFDEVFKKARALLVD*
Ga0134085_102249311	3300015359	Grasslands Soil	IRPQRLFTVDYRVILSSVGKVNTAKLDEVLVKVRELFD*
Ga0132256_1003644422	3300015372	Arabidopsis Rhizosphere	GEIGDPCFIRPQRLFTVEQHVILSSVGKVIAEKFDEVFKKMRTLFVD*
Ga0132256_1008099581	3300015372	Arabidopsis Rhizosphere	EIDQPCFIRPQRLFTVEQHVILHSVGKVTAVKYDEVFKKVRTLFID*
Ga0182034_116948241	3300016371	Soil	RGQIGRPCFIRPQRLFTVEQRVCLQSVGKVTAEKFDEVFKKARALFVD
Ga0184621_103396931	3300018054	Groundwater Sediment	IRPQRLFTVEQHVILHAVGKVTAEKFDEVFKKARALFVD
Ga0184618_101773262	3300018071	Groundwater Sediment	IRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTRALFVD
Ga0066667_104256301	3300018433	Grasslands Soil	RGEIDQPCFIRPQRLFTVEQHVILHSVGEVTSEKFDEVFKQMRGLFVD
Ga0066667_111186131	3300018433	Grasslands Soil	QIDRPCFIRPQRLFSVEQHVILHSIGKVTAEKFDEVFKKARALFVD
Ga0066667_115174001	3300018433	Grasslands Soil	QGFIRPQRLFTVDYRVILHSVGKVQAAKLDEVLVKVRELFV
Ga0066662_102301982	3300018468	Grasslands Soil	FIRPQRLFAVEQHVILHSIGKVTAEKFDEVFKKTRALFVD
Ga0066669_102247022	3300018482	Grasslands Soil	CFIRPQRLFTVEQHVILHSLGKVTAAKFEEVFKKARALLVD
Ga0193703_10020761	3300019876	Soil	CFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKRTRALFVD
Ga0193723_11936941	3300019879	Soil	GQPGFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTLTLFVD
Ga0193727_11071701	3300019886	Soil	ERGEIGQPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTLTLFVD
Ga0193727_11633232	3300019886	Soil	IRPQRLFTVEQHVILHSVGKVTAEKFDEVFKRTRALFVD
Ga0193730_10393931	3300020002	Soil	QLDQPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKRTRALFVD
Ga0179596_105688771	3300021086	Vadose Zone Soil	AQPCFIRPQRLFTVEHHIILSSIGKVQAAKLDEVLKKARAFFD
Ga0193719_100240171	3300021344	Soil	ERGQIDQPCFIRPQRLFSVEHHIILSSVAKVTAAKFDEVFKKTRALFVD
Ga0126371_108779472	3300021560	Tropical Forest Soil	CFIRPQRLFTVEQHVILHSIGKVTGEKFDEVFKKFRGLFVD
Ga0126371_129583922	3300021560	Tropical Forest Soil	RPQRLFTVEQRVCLQSVGKVSAEKFDEVFKKARALFVD
Ga0222622_100578771	3300022756	Groundwater Sediment	EIGQPGFIRSQRLFTVEQHVILHSIGKVTAEKFDEVFKKTRALFVD
Ga0247745_10423841	3300022898	Soil	IRSQRLFTVEQHVILHSMGKVTAAKYDEVFKKVRTLFID
Ga0193714_10605221	3300023058	Soil	DQPCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKMRTLFVD
Ga0210142_11177851	3300025552	Natural And Restored Wetlands	APCFIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTRTLFVD
Ga0207699_113750481	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ERGEIGHPCFIRPPRLFTVEQHLILRSVGKVTAEKFDEVFKKARSLIVD
Ga0207704_106705811	3300025938	Miscanthus Rhizosphere	FIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKTRTLFID
Ga0209469_10455141	3300026307	Soil	IRPQRLFTVEHHIILHSVGKVTAAKFDEVFKKARALFVD
Ga0209469_10543181	3300026307	Soil	RPQRLFTVEHHIILHSVGKVTTEKFDEVFKRVRELFVD
Ga0209265_11146212	3300026308	Soil	IRPQRLFSVEQHVILHSVGKVTTEKFDEVFKRVRELFVD
Ga0209055_10218873	3300026309	Soil	QRLFAVEQHVILHSIGKVTAEKFDEVFKKTRALFVD
Ga0209155_11551181	3300026316	Soil	FIRPQRLFTVEQHVIFHAVGKVTAEKFDEVFKKTRALFVD
Ga0209152_102773462	3300026325	Soil	VITPQRLFTVEQHVILHSIGKVTAEKFDEVFKKARALFVD
Ga0209377_12804811	3300026334	Soil	FIRPQRLFTVEHHIILHSVGKVTAAKFDEVFKKTRALFID
Ga0209690_10977051	3300026524	Soil	FEHGQFTQQGFIRPQRLFTVDYRVILKSVGKVNTVKLDEVLVKVRELFD
Ga0209056_102009503	3300026538	Soil	FERGQLPQPGFIRPQRLFTVEQHVIFHAVGKVTAEKFDEVFKKTRALFVD
Ga0268266_104203832	3300028379	Switchgrass Rhizosphere	EIGQPCFIRPQRLFTGEQHVILHSVGKVTAEKFDEVFKKTRTLFVD
Ga0268266_114109041	3300028379	Switchgrass Rhizosphere	CFIRPQRLFTVEQHVIIRSVGKVTAAKYDEVFKKVRTLFID
Ga0307295_100311791	3300028708	Soil	CERGEIGQPCFIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKTLTLFVD
Ga0307284_101138031	3300028799	Soil	CFIRPQRLFTVEQHVILHSVGKVTAAKYDEVFKKVRTLFID
Ga0307278_102679871	3300028878	Soil	FIRPQRLFTVEQHVILHSVGKVTAEKFDEVFKKTRALFVD
Ga0170820_163876413	3300031446	Forest Soil	RPQRLFTVEQHVILHSVGKVTAEKFDEVFKKARALFVD
Ga0170818_1142861011	3300031474	Forest Soil	PQRLFTVEQHVILHSVGKVTAEKFDEVFKKVRALFVD
Ga0318572_108308931	3300031681	Soil	QPCFIRPQRLFTVEQRVCLQSVGKVSAEKFDEVFKKARALFVD
Ga0310912_106242622	3300031941	Soil	ERGRLAQPRFIRPQRLFTVEQRVILYSIGKVKAAKMAEVLAKAHALFS
Ga0310912_113415011	3300031941	Soil	DCERGQIGQPCFIRPQRLFTVEQRVCLQSVGKVSAEKFDEVFKKARALFVD
Ga0307472_1022373221	3300032205	Hardwood Forest Soil	GQPCFIRPQRLFSVEQHVILSSVGKVTAAKFDEVFKKVRGLLLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F055798

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences