Metagenome / Metatranscriptome Family F055846

Basic Information
Family ID	F055846
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	42 residues
Representative Sequence	VYVPRGTVHRNQNLSNRPARSIELNITDKDKPQTEQVP
Number of Associated Samples	121
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.80 %
% of genes near scaffold ends (potentially truncated)	92.75 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Most Common Taxonomy
Group	Bacteria (85.507 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (22.464 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.623 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00753	Lactamase_B	10.14
PF07883	Cupin_2	9.42
PF03807	F420_oxidored	6.52
PF13577	SnoaL_4	2.90
PF00561	Abhydrolase_1	2.90
PF01774	UreD	2.17
PF00903	Glyoxalase	2.17
PF01494	FAD_binding_3	2.17
PF03401	TctC	1.45
PF01402	RHH_1	1.45
PF00296	Bac_luciferase	1.45
PF07681	DoxX	0.72
PF07237	DUF1428	0.72
PF13305	TetR_C_33	0.72
PF08388	GIIM	0.72
PF06271	RDD	0.72
PF04140	ICMT	0.72
PF03079	ARD	0.72
PF13384	HTH_23	0.72
PF04909	Amidohydro_2	0.72
PF07676	PD40	0.72
PF12681	Glyoxalase_2	0.72
PF13424	TPR_12	0.72
PF07769	PsiF_repeat	0.72
PF03972	MmgE_PrpD	0.72
PF01025	GrpE	0.72
PF13505	OMP_b-brl	0.72
PF07690	MFS_1	0.72
PF02781	G6PD_C	0.72
PF00083	Sugar_tr	0.72
PF00800	PDT	0.72
PF03466	LysR_substrate	0.72
PF01906	YbjQ_1	0.72
PF00072	Response_reg	0.72
PF01436	NHL	0.72
PF01384	PHO4	0.72
PF14492	EFG_III	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	4.35
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.17
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	2.17
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	2.17
COG0829	Urease accessory protein UreH	Posttranslational modification, protein turnover, chaperones [O]	2.17
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.45
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.45
COG0077	Prephenate dehydratase	Amino acid transport and metabolism [E]	0.72
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.72
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.72
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.72
COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.72
COG1791	Acireductone dioxygenase (methionine salvage), cupin superfamily	Amino acid transport and metabolism [E]	0.72
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.72
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.72
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.72
COG5507	Uncharacterized conserved protein YbaA, DUF1428 family	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.51 %
Unclassified	root	N/A	14.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.51 %
Unclassified	root	N/A	14.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.51 %
Unclassified	root	N/A	14.49 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.71 %
Unclassified	root	N/A	14.49 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.94 %
Unclassified	root	N/A	14.49 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.17 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	2.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.90 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.62 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.17 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.17 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2.17 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.90 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.72 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.62 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2.17 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.17 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.45 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.72 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	0.72 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.62 %
Lamprobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter	2.17 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.90 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.45 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %
Paraglaciecola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola	0.72 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.72 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.62 %
Lamprobacter modestohalophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter → Lamprobacter modestohalophilus	2.17 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.90 %
Granulicella tundricola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	1.45 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Paraglaciecola psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila	0.72 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.62 %
Lamprobacter modestohalophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter → Lamprobacter modestohalophilus	2.17 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.90 %
Granulicella tundricola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	1.45 %
Paraglaciecola psychrophila 170	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila → Paraglaciecola psychrophila 170	0.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.72 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.72 %
bacterium HR39	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10638738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	506	Open in IMG/M
3300001851\|RCM31_10111068	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005332\|Ga0066388_100874286	All Organisms → cellular organisms → Bacteria → Proteobacteria	1481	Open in IMG/M
3300005332\|Ga0066388_105089843	Not Available	668	Open in IMG/M
3300005332\|Ga0066388_105903031	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300005533\|Ga0070734_10516193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300005559\|Ga0066700_10256883	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300005561\|Ga0066699_10659472	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005615\|Ga0070702_101246698	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300005764\|Ga0066903_101508251	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300005764\|Ga0066903_109162020	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300005921\|Ga0070766_10407241	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300006028\|Ga0070717_10432622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1184	Open in IMG/M
3300006032\|Ga0066696_10316632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1015	Open in IMG/M
3300006046\|Ga0066652_101189198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300006046\|Ga0066652_101381278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter → Lamprobacter modestohalophilus	660	Open in IMG/M
3300006195\|Ga0075366_10784986	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300006804\|Ga0079221_10210163	All Organisms → cellular organisms → Bacteria → Acidobacteria	1074	Open in IMG/M
3300006854\|Ga0075425_102910425	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300006865\|Ga0073934_10616202	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300006871\|Ga0075434_100212435	Not Available	1955	Open in IMG/M
3300007788\|Ga0099795_10018501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2240	Open in IMG/M
3300009038\|Ga0099829_10989775	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300009100\|Ga0075418_10523648	Not Available	1274	Open in IMG/M
3300009137\|Ga0066709_102574334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300009143\|Ga0099792_10002219	All Organisms → cellular organisms → Bacteria	7385	Open in IMG/M
3300009156\|Ga0111538_12644205	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300009525\|Ga0116220_10086808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1320	Open in IMG/M
3300009525\|Ga0116220_10381821	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300009633\|Ga0116129_1055489	All Organisms → cellular organisms → Bacteria → Proteobacteria	1214	Open in IMG/M
3300009683\|Ga0116224_10069380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1717	Open in IMG/M
3300009792\|Ga0126374_11392735	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300010036\|Ga0126305_10954862	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300010047\|Ga0126382_11330634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	651	Open in IMG/M
3300010304\|Ga0134088_10057259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1797	Open in IMG/M
3300010325\|Ga0134064_10309288	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010358\|Ga0126370_10555032	All Organisms → cellular organisms → Bacteria → Acidobacteria	982	Open in IMG/M
3300010360\|Ga0126372_10239004	All Organisms → cellular organisms → Bacteria → Acidobacteria	1548	Open in IMG/M
3300010360\|Ga0126372_11362209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter → Lamprobacter modestohalophilus	741	Open in IMG/M
3300010362\|Ga0126377_10095403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2702	Open in IMG/M
3300010366\|Ga0126379_10953941	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300010398\|Ga0126383_12842267	Not Available	565	Open in IMG/M
3300010400\|Ga0134122_10219917	All Organisms → cellular organisms → Bacteria → Acidobacteria	1586	Open in IMG/M
3300010400\|Ga0134122_12683464	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010401\|Ga0134121_10937699	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300011120\|Ga0150983_11609418	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
3300011120\|Ga0150983_12024819	Not Available	586	Open in IMG/M
3300011403\|Ga0137313_1087789	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300011420\|Ga0137314_1006938	All Organisms → cellular organisms → Bacteria	3133	Open in IMG/M
3300011423\|Ga0137436_1010862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2240	Open in IMG/M
3300011435\|Ga0137426_1057137	Not Available	1035	Open in IMG/M
3300012189\|Ga0137388_10161391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1994	Open in IMG/M
3300012199\|Ga0137383_11027089	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300012201\|Ga0137365_10159541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1692	Open in IMG/M
3300012207\|Ga0137381_10600247	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300012208\|Ga0137376_10384697	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300012350\|Ga0137372_10497043	All Organisms → cellular organisms → Bacteria → Acidobacteria	908	Open in IMG/M
3300012354\|Ga0137366_10741285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300012362\|Ga0137361_10235337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1666	Open in IMG/M
3300012582\|Ga0137358_10606623	Not Available	734	Open in IMG/M
3300012917\|Ga0137395_10534824	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300012918\|Ga0137396_10993257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300012925\|Ga0137419_11978843	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300012929\|Ga0137404_12051537	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300012930\|Ga0137407_11732364	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300012971\|Ga0126369_11136441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprobacter → Lamprobacter modestohalophilus	870	Open in IMG/M
3300014489\|Ga0182018_10346971	Not Available	800	Open in IMG/M
3300014495\|Ga0182015_10669163	Not Available	656	Open in IMG/M
3300014501\|Ga0182024_11125624	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300014658\|Ga0181519_11049580	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300015054\|Ga0137420_1439299	All Organisms → cellular organisms → Bacteria → Acidobacteria	2389	Open in IMG/M
3300015264\|Ga0137403_10518703	Not Available	1062	Open in IMG/M
3300015358\|Ga0134089_10268554	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300015358\|Ga0134089_10409088	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300015373\|Ga0132257_104412803	Not Available	512	Open in IMG/M
3300016294\|Ga0182041_10421533	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300016294\|Ga0182041_11425225	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	636	Open in IMG/M
3300016371\|Ga0182034_11072370	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300018028\|Ga0184608_10215608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	842	Open in IMG/M
3300018062\|Ga0187784_10689824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	817	Open in IMG/M
3300018062\|Ga0187784_11454339	Not Available	543	Open in IMG/M
3300018468\|Ga0066662_10886419	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300019238\|Ga0180112_1322085	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300019244\|Ga0180111_1297570	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300021180\|Ga0210396_11667568	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300021407\|Ga0210383_10507463	All Organisms → cellular organisms → Bacteria → Proteobacteria	1041	Open in IMG/M
3300021432\|Ga0210384_11884320	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300021476\|Ga0187846_10185926	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300021858\|Ga0213852_1151573	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300023046\|Ga0233356_1044774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300024251\|Ga0247679_1067562	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300026088\|Ga0207641_12049478	Not Available	573	Open in IMG/M
3300026329\|Ga0209375_1015669	All Organisms → cellular organisms → Bacteria → Proteobacteria	4507	Open in IMG/M
3300026342\|Ga0209057_1159480	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300026377\|Ga0257171_1090969	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300026481\|Ga0257155_1062799	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	590	Open in IMG/M
3300026536\|Ga0209058_1348136	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300026555\|Ga0179593_1060427	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39	2363	Open in IMG/M
3300027513\|Ga0208685_1076518	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300027616\|Ga0209106_1073744	Not Available	765	Open in IMG/M
3300027676\|Ga0209333_1060218	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300027826\|Ga0209060_10392564	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027826\|Ga0209060_10412872	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300027882\|Ga0209590_10454314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300027882\|Ga0209590_10685101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila → Paraglaciecola psychrophila 170	656	Open in IMG/M
3300027882\|Ga0209590_10732513	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300028556\|Ga0265337_1002915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7600	Open in IMG/M
3300028748\|Ga0302156_10238765	Not Available	837	Open in IMG/M
3300028879\|Ga0302229_10279232	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	753	Open in IMG/M
3300029882\|Ga0311368_11077096	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300029943\|Ga0311340_10462441	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300029944\|Ga0311352_10401963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	1121	Open in IMG/M
3300030007\|Ga0311338_10792199	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300030056\|Ga0302181_10155981	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300030490\|Ga0302184_10060024	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300030509\|Ga0302183_10187674	Not Available	808	Open in IMG/M
3300030520\|Ga0311372_11013027	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	1094	Open in IMG/M
3300030580\|Ga0311355_11632246	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031233\|Ga0302307_10037302	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300031234\|Ga0302325_11854456	Not Available	752	Open in IMG/M
3300031236\|Ga0302324_101549697	Not Available	857	Open in IMG/M
3300031564\|Ga0318573_10794762	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300031679\|Ga0318561_10806542	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300031740\|Ga0307468_100051470	All Organisms → cellular organisms → Bacteria → Proteobacteria	2154	Open in IMG/M
3300031846\|Ga0318512_10296715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	803	Open in IMG/M
3300031890\|Ga0306925_11027954	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300031912\|Ga0306921_11423144	Not Available	761	Open in IMG/M
3300031954\|Ga0306926_11035008	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300031954\|Ga0306926_13023957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300032001\|Ga0306922_12165519	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300032051\|Ga0318532_10265278	Not Available	610	Open in IMG/M
3300032066\|Ga0318514_10230673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300032076\|Ga0306924_10070354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3903	Open in IMG/M
3300032076\|Ga0306924_10314238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1797	Open in IMG/M
3300032261\|Ga0306920_101089042	All Organisms → cellular organisms → Bacteria → Acidobacteria	1159	Open in IMG/M
3300032261\|Ga0306920_101099701	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300032829\|Ga0335070_11898150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	537	Open in IMG/M
3300033289\|Ga0310914_11801628	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.20%
Host-Associated	Host-Associated	5.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.78%
Aquatic	Environmental → Aquatic	9.42%
Plants	Host-Associated → Plants	5.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.91%
Peat	Environmental → Terrestrial → Peat	10.14%
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Sediment	Environmental → Aquatic → Sediment	4.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.45%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.72%
Cave	Environmental → Terrestrial → Cave	0.72%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.14%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.14%
Loam	Environmental → Terrestrial → Soil → Loam	9.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.45%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.72%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.42%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.17%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.45%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.45%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.72%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.72%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.72%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055846

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_106387382	3300001661	Forest Soil	LMKAGDYVYVPRGTIHRNQNVSKSPARSIELNITDKDKPQTEQVP*
RCM31_101110682	3300001851	Marine Plankton	KPGDFVYVPRGTIHRNQNMTNRPARSIELNITDKDKPQTEQVPN*
Ga0066388_1008742863	3300005332	Tropical Forest Soil	KVGDSAYIPRGTVHRNQNLTDKPARTIELNIMDKDKPLLEPVAD*
Ga0066388_1050898431	3300005332	Tropical Forest Soil	LKVGDWVYVPRGTIHRNQNLSNAPARAVEMNITDKDAPQTEQVP*
Ga0066388_1059030311	3300005332	Tropical Forest Soil	VLKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0070734_105161931	3300005533	Surface Soil	DSAYIPRGTVHRNQNLTDKPARTIELNVMDKDKPLIEQVPVTQ*
Ga0066700_102568833	3300005559	Soil	MKAGDYVYVPRGTIHRNQNLSKSPARSIELNITDKDKPQTEQV
Ga0066699_106594721	3300005561	Soil	PRGTIHRNQNLSKAPARSIELNITDKDKPQTEQVP*
Ga0070702_1012466982	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	FVYVPRGTVHRNQNLTNRPARSFELNITDKDKPQTEQVTN*
Ga0066903_1015082511	3300005764	Tropical Forest Soil	YVPRGTIHRNQNLSDKPARSIELNITDKDKPQTEQVTE*
Ga0066903_1091620201	3300005764	Tropical Forest Soil	SAYIPRGTVHRNENKTDKAARTIELNVLDKDQPALQPVAETQ*
Ga0070766_104072411	3300005921	Soil	GESVYVPRGTVHRNQNLSNKPVRSIELNITDKDKPQTEAVTN*
Ga0070717_104326222	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LKAGDYVYVPRGTIHRNQNLSNRPARAIELNITDKDKPQTEQAPE*
Ga0066696_103166321	3300006032	Soil	PRGTVHRNQNLSDKPARSIELNIMDKDKPGLELVAD*
Ga0066652_1011891982	3300006046	Soil	YVPRGTVHRNQNVSNRPARSIELNITDKDKPQTEQVP*
Ga0066652_1013812782	3300006046	Soil	YVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0075366_107849862	3300006195	Populus Endosphere	LKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0079221_102101631	3300006804	Agricultural Soil	LKVGDSAYIPRGTVHRNQNMTDKPARSIELNIWDKDKPGLELVTE*
Ga0075425_1029104253	3300006854	Populus Rhizosphere	YIPRGTVHRNQNMTDKPARSIELNIWDKDKPGLELVTE*
Ga0073934_106162021	3300006865	Hot Spring Sediment	RTMRPGDWVYVPRGTIHRNQNLSTQPARSIELNITDKDAPQTEVVPN*
Ga0075434_1002124351	3300006871	Populus Rhizosphere	PRGTIHRNQNVSGRPARSIELNITDNDQPQTEQVP*
Ga0099795_100185015	3300007788	Vadose Zone Soil	VHIPRGTVHRNENLTDKPARSIELNIMDKDKPGLGLVND*
Ga0099829_109897751	3300009038	Vadose Zone Soil	VGDSAYIPRGTVHRNQNMTDKPARSIELNIIDKDKPALELVAE*
Ga0075418_105236481	3300009100	Populus Rhizosphere	PRKMRPGDWVYVPRGTVHRNQNLSGAMARSIELNITDKDAPQTEVVK*
Ga0066709_1025743342	3300009137	Grasslands Soil	FTVRGQQPRLMKAGNFVYVPRGTIHRNQNLSKLPARSIELNITDKDKPQTEQVP*
Ga0099792_100022196	3300009143	Vadose Zone Soil	LCRPLVRVHIPRGTVHRNENLTDKPARSIELNIMDKDKPGLGLVND*
Ga0111538_126442052	3300009156	Populus Rhizosphere	YVPRGTVHRNQNLSGAMARSIELNITDKDAPQTEVVK*
Ga0116220_100868081	3300009525	Peatlands Soil	AYIPRGTIHRNQNLTDKPARTIELNILDKDKPALEPVAETQ*
Ga0116220_103818212	3300009525	Peatlands Soil	SVYIPRGTIHRNQNLSDKPSRRIELNIIDKDKPALEPVNN*
Ga0116129_10554893	3300009633	Peatland	PRGTIHRNQNMTDKPARTIELVILDKDKPALEQVDE*
Ga0116224_100693801	3300009683	Peatlands Soil	IHRNQNLTDKPARTIELNILDKDKPALEPVAETQ*
Ga0126374_113927352	3300009792	Tropical Forest Soil	DFVYVPRGTIHRNQNLSDKPARSIELNITDKDKPQTEQVTE*
Ga0126305_109548621	3300010036	Serpentine Soil	PRVLKVGDWVYVPRGTIHRNQNLTNMPARAVEMNLTDKGVPQTEVVKD*
Ga0126382_113306341	3300010047	Tropical Forest Soil	TVKGQAPRVLKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0134088_100572591	3300010304	Grasslands Soil	AGDFVYVPRGTVHRNQNLSKLPARSIELNITDKDKPQTEQVP*
Ga0134064_103092881	3300010325	Grasslands Soil	VKGQQPRVMKPGEFVYVPRGTIHRNQNLSKLPARSIELNITDKDKPQTEQVP*
Ga0126370_105550323	3300010358	Tropical Forest Soil	IPRGTVHRNQNLTDKPARTIELNIMDKDKPLLEPVPVTQ*
Ga0126372_102390041	3300010360	Tropical Forest Soil	TLKVGDSAYIPRGTVHRNQNLTDKPARSIELNIMDKDKPALEPVTE*
Ga0126372_113622092	3300010360	Tropical Forest Soil	PPRVLKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0126377_100954034	3300010362	Tropical Forest Soil	VPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0126379_109539411	3300010366	Tropical Forest Soil	GTIHRNQNLSDKPARSIELNITDKDKPQTEQVTE*
Ga0126383_128422671	3300010398	Tropical Forest Soil	IPRGTVHRNQNLTDKPARSIELNIMDKDKPGLELVSE*
Ga0134122_102199174	3300010400	Terrestrial Soil	PRGTIHRNQNMTNRPVRSIELNITDKDAPQTEVVK*
Ga0134122_126834642	3300010400	Terrestrial Soil	HIPRGTIHRNHNMTDKPARSVELNIMDKGKPVLEVVKD*
Ga0134121_109376993	3300010401	Terrestrial Soil	KPGDFVYVPRGTIHRNQNMTNRPVRSIELTITDKDAPQTEVVK*
Ga0150983_116094182	3300011120	Forest Soil	PRGTVHRNQNLSDKPARSIELNITDKDKPQTEPVTN*
Ga0150983_120248192	3300011120	Forest Soil	RGTVHRNQNLTDKPARAINLNIMDKDKPQTEQVTN*
Ga0137313_10877891	3300011403	Soil	WVYVPRGTIHRNQNLSGQSARSIELNITDKDAPQTEVVPN*
Ga0137314_10069381	3300011420	Soil	PRGTIHRNQNLSGQSARSIELNITDKDAPQTEVVPN*
Ga0137436_10108621	3300011423	Soil	PRKLKVGDSVHILRGTIHRNQNMTDKPSRSVELVIVDKDKPQTEQVAD*
Ga0137426_10571372	3300011435	Soil	YVPRGTVHRNQNLSGSMARSIELNITDKDAPQTEVVK*
Ga0137388_101613911	3300012189	Vadose Zone Soil	PRGTIHRNQNVSANSARAIELNITDKDKPQTEQVAE*
Ga0137383_110270891	3300012199	Vadose Zone Soil	RTLKPGDFVYVPRGTIHRNQNVSANSARAIELNITDKDKPQTEQVAE*
Ga0137365_101595412	3300012201	Vadose Zone Soil	GDYVYVPRGTVHRNQNLSNRPARSIELNITDKDKPQTEQVP*
Ga0137381_106002471	3300012207	Vadose Zone Soil	APRVLKPGEYVYVPRGTIHRNQNMTNRPVRSIELNITDKGKPQTEPVPD*
Ga0137376_103846971	3300012208	Vadose Zone Soil	RGTIHRNQNVSANSARAIELNITDKDKPQTEQVAE*
Ga0137372_104970431	3300012350	Vadose Zone Soil	PPRHMKTGDFVYVPRGTIHRNQNLSKSPARSIELNITDKDKPPTEQVP*
Ga0137366_107412851	3300012354	Vadose Zone Soil	DSVHIPRGTVHRNQNLTDKPARSIELNIMDKDKPVLELVKE*
Ga0137361_102353372	3300012362	Vadose Zone Soil	WVYVPRGTIHRNQNLTNAPARAVEMNITDKGVPQTEAVPE*
Ga0137358_106066232	3300012582	Vadose Zone Soil	LCRPLDSVHIPRGTVHRNQNLTDKPARSNELNIWDKDKPGLELVND*
Ga0137395_105348241	3300012917	Vadose Zone Soil	DFVYVPRGTVHRNQNLSKSPARSIELNITDKDKPQTEQVP*
Ga0137396_109932571	3300012918	Vadose Zone Soil	VGDSVHIPRGTVHRNQNLTDKPARSIELNIMDKDKPALELVKE*
Ga0137419_119788431	3300012925	Vadose Zone Soil	VPRGTIHRNQNVSANSARAIELNITDKDKPQTEQVAD*
Ga0137404_120515371	3300012929	Vadose Zone Soil	APRVLKVGDWVYVPRGTIHRNQNLTNAPASAVEMNITDKGVPQTEAVPE*
Ga0137407_117323642	3300012930	Vadose Zone Soil	RVLKVGDWVYVPRGTIHRNQNLTSEPARAVEMNITDKDVPQTEVVPE*
Ga0126369_111364412	3300012971	Tropical Forest Soil	WVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE*
Ga0182018_103469712	3300014489	Palsa	PRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN*
Ga0182015_106691632	3300014495	Palsa	VIVVVYIPRGTIHRNQNLSGQLVRTVELMIVDKDKPHTEPVN*
Ga0182024_111256242	3300014501	Permafrost	VIVVVYIPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN*
Ga0181519_110495801	3300014658	Bog	RGTIHRNQNLTDKPARSVELVILDKDKPGLEAVPE*
Ga0137420_14392991	3300015054	Vadose Zone Soil	MKAGDYVYVPRGTIHRNQNVSKSPARSIELNITDKDKPQTEQVP*
Ga0137403_105187031	3300015264	Vadose Zone Soil	VPRGTIHRNQNLTNAPARAVEMNITDKGVPQTEAVPE*
Ga0134089_102685541	3300015358	Grasslands Soil	KACDYVYVPRGTIHRNQNVSKSPARSIELNITDKDKPQTEQVP*
Ga0134089_104090881	3300015358	Grasslands Soil	VYVPRGTVHRNQNLSNRPARSIELNITDKDKPQTEQVP*
Ga0132257_1044128032	3300015373	Arabidopsis Rhizosphere	VYVPRGTIHRNQNLSNRPARAVEMNITDKDKPQTEEVPN*
Ga0182041_104215332	3300016294	Soil	TIYVPRGTVHRNQNLSNAPARSIEVNVTDKDKPQTEQVTN
Ga0182041_114252252	3300016294	Soil	DSIYVPRGTVHRNQNLTDKPARAINLNIMDKDKPQTTPVTN
Ga0182034_110723702	3300016371	Soil	YIPRGTIHRNQNLTDKPARTIELNIMDKDKPLLEPVVGQ
Ga0184608_102156083	3300018028	Groundwater Sediment	PRVLKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE
Ga0187784_106898241	3300018062	Tropical Peatland	RGTVHRNQNLSSMPARSIELNITDKDKPQTEPVAE
Ga0187784_114543391	3300018062	Tropical Peatland	PRGTVHRNQNLSDKPSRSVELNIIEKDKPALENVTN
Ga0066662_108864192	3300018468	Grasslands Soil	DFVYVPRGTIHRNQNLSKLPARSIELNITDKDKPQTEQVP
Ga0180112_13220851	3300019238	Groundwater Sediment	RGQAPRTMKPGDWVYVPRGTIHRNQNLSSQPVRSIELNITDKDAPQTEVVPN
Ga0180111_12975702	3300019244	Groundwater Sediment	VYVPRGTIHRNQNLSSQPVRSIELNITDKDAPQTEVVPN
Ga0210396_116675681	3300021180	Soil	WVYIPRGKVHRNQNNTDKPARSIELVIIDKDKPALQVVEE
Ga0210383_105074631	3300021407	Soil	SIYVPRGTIHRNQNLTDKPARSINLNIMDKDQPQTEQITN
Ga0210384_118843201	3300021432	Soil	GDSVHIPRGTVHRNQNLTDKPARSIELNIMDKDKPALELVTN
Ga0187846_101859262	3300021476	Biofilm	YVPRGTVHRNQNVSDKPARSIEVNITDKDKPQTEQVAE
Ga0213852_11515733	3300021858	Watersheds	PRGTVHRNQNLTDKPARTVELNIMDKDKPLLEPVAE
Ga0233356_10447741	3300023046	Soil	YIPRGTVHRNQNLTDKPARTIELNIMDKDKPLLELVTQ
Ga0247679_10675621	3300024251	Soil	GDSVYIPRGTVHRNQNLTDMPARSIELNIMDKDKPALELVTN
Ga0207641_120494781	3300026088	Switchgrass Rhizosphere	RGTVHRNQNMTDKPARSIELNIWDKDKPGLELVTE
Ga0209375_10156691	3300026329	Soil	GDFVYVPRGTIHRNQNLSKLPARSIELNITDKDKPQTEQVP
Ga0209057_11594802	3300026342	Soil	DFVYVPRGTVHRNQNLSKLPARSIELNITDKDKPQTEQVP
Ga0257171_10909692	3300026377	Soil	GDSAYIPRGTVHRNQNLTDKPARTIELNIMDKDKPLLEQVTE
Ga0257155_10627992	3300026481	Soil	FVYVPRGTVHRNQNVSANSARAIELNITDKDKPQTEQVVE
Ga0209058_13481361	3300026536	Soil	MKAGDFVYVPRGTIHRNQNVSKSPARSIELNITDKDKPQTEQVP
Ga0179593_10604272	3300026555	Vadose Zone Soil	LCRPLVRVHIPRGTVHRNENLTDKPARSIELNIMDKDKPGLGLVND
Ga0208685_10765181	3300027513	Soil	DWVYVPRGTVHRNQNLSGSMARSIELNITDKDAPQTEVVK
Ga0209106_10737441	3300027616	Forest Soil	KAGDTIYVPRGTVHRNQNLSNAPARSIEVNVTDKDKPQTEQVTN
Ga0209333_10602182	3300027676	Forest Soil	VIVVVYIPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0209060_103925642	3300027826	Surface Soil	RGTVHRNQNLTDKPARTIELNIMDKDKPMVEQVPVTQ
Ga0209060_104128721	3300027826	Surface Soil	MFPRGTVHRNQNLTNRPARSIELNITDKDKPQTEQVP
Ga0209590_104543142	3300027882	Vadose Zone Soil	DFVYVPRGTIHRNQNLSKRPARSIELNITDKDKPQTEQVP
Ga0209590_106851011	3300027882	Vadose Zone Soil	GEFVYVPRGTIHRNQNVSNSPARAIELNITDKDKPQTEPVAE
Ga0209590_107325131	3300027882	Vadose Zone Soil	PRVLKAGDFVYVPRGTIHRNQNVSANSARAIELNITDKDKPQTEQVAE
Ga0265337_10029159	3300028556	Rhizosphere	YVPRGTVHRNQNLTDRPARSIELNITDKDKPQTEQVN
Ga0302156_102387651	3300028748	Bog	YIPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0302229_102792323	3300028879	Palsa	KVGDSVYIPRGTVHRNQNLTDKPARTVELVILDKDKPGLEVVKDESVAP
Ga0311368_110770962	3300029882	Palsa	SVYIPRGTVHRNQNLTDKPARSVELVIIDKDKPQSEVTN
Ga0311340_104624411	3300029943	Palsa	VIVVVYIPRGTVHRNQNLSGQPVRTVELMIVDKDKP
Ga0311352_104019631	3300029944	Palsa	PRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0311338_107921992	3300030007	Palsa	VGDSVYIPRGTIHRNQNMTDKPARTIELVILDKDKPALEQVDE
Ga0302181_101559811	3300030056	Palsa	VLKVGESVYIPRGTIHRNQNLTDKPARTVELVILDKDKPGLEVVKDESVAP
Ga0302184_100600241	3300030490	Palsa	YIPRGTIHRNQNLTDKPARTVELVILDKDKPGLEVVKDESVAP
Ga0302183_101876741	3300030509	Palsa	IYIPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0311372_110130271	3300030520	Palsa	GDAIYSPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0311355_116322462	3300030580	Palsa	GDVVYIPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEPVN
Ga0302307_100373025	3300031233	Palsa	VIVVVYIPRGTVHRNQNLSGQPVRTVELMIVDKDKPH
Ga0302325_118544562	3300031234	Palsa	DAIYIPRGAVHRNQNLSGQPVRTVELMIVDKDKPHTEPVK
Ga0302324_1015496971	3300031236	Palsa	IPRGTVHRNQNLSGQPVRTVELMIVDKDKPHTEVVN
Ga0318573_107947622	3300031564	Soil	IPRGTVHRNENKTDKPARTVELNVLDKDQPALQPVAETQ
Ga0318561_108065421	3300031679	Soil	KAGDWVYVPRGTVHRNQNLSGRPARSIELNITDKDKPQTEQVAN
Ga0307468_1000514701	3300031740	Hardwood Forest Soil	VRGQPPRVLKVGDWVYVPRGTIHRNQNLTNAPARAVEMNITDKDVPQTEVVPE
Ga0318512_102967151	3300031846	Soil	QPRLMKAGEFVYVPRGTVHRNQNLSKLPARSIELNITDKDKPQTEQVP
Ga0306925_110279542	3300031890	Soil	MKAGDWVYVPRGTVHRNQNLSGRPARSIELNITDKDKPQTEQVTN
Ga0306921_114231441	3300031912	Soil	SYHIPRGTVHRNQNMTDKPARTIELNIVDKDKPLLEPVE
Ga0306926_110350081	3300031954	Soil	TFTIKGQQPRLMKAGEFVYVPRGAIHRNQNLSKLPALSIELNITDKDKPQTEQVP
Ga0306926_130239572	3300031954	Soil	EPRTLKVGDYAYLPRGTVHRNQNLTDKPALVIELNIMDKDKPDLEPVTE
Ga0306922_121655191	3300032001	Soil	YYIPRGTVHRNQNMTDKPARTIELNIMDKDKPLLEPVTE
Ga0318532_102652782	3300032051	Soil	WVYVPRGTVHRNQNLSGRPARSIELNITDKDKPQTEQVTN
Ga0318514_102306731	3300032066	Soil	KGQAPRVLKAGEFVYVPRGTVHRNQNMSSMPARSIELNITDKGVPQTEVVN
Ga0306924_100703546	3300032076	Soil	TVYVPRGTVHRNQNLSNAPARSIEVNVTDKDKPQTEQVAN
Ga0306924_103142383	3300032076	Soil	EVTFTIKGEAPRLMKAGEWVYVPRGTVHRNQNLSGRPARSIELNITDKDKPQTEQVTN
Ga0306920_1010890422	3300032261	Soil	DTVYVPRGTVHRNQNLSNAPARSIEVNVTDKDKPQTEQVAN
Ga0306920_1010997012	3300032261	Soil	VPRGTVHRNQNLSNAPARSIEVNITDKDVPQTEPLVE
Ga0335070_118981502	3300032829	Soil	AGDYVYVPRGTVHRNQNLTNRPARAIELNITDKGVPQTEQMGD
Ga0310914_118016281	3300033289	Soil	GDFVYVPRGTIHRNQNLSDKPARSIELNITDKDKPQTEQVTE

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign