Metagenome / Metatranscriptome Family F055909

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055909
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	50 residues
Representative Sequence	MTLGAAAAAQVRLIVWCKSCQHQVEPDPAEMAARYGADTSVLDWRERL
Number of Associated Samples	99
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.07 %
% of genes near scaffold ends (potentially truncated)	63.04 %
% of genes from short scaffolds (< 2000 bps)	73.91 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.188 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (57.971 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.68% β-sheet: 10.53% Coil/Unstructured: 65.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00805	Pentapeptide	2.17
PF14337	Abi_alpha	2.17
PF01068	DNA_ligase_A_M	1.45
PF08028	Acyl-CoA_dh_2	0.72
PF01609	DDE_Tnp_1	0.72
PF14559	TPR_19	0.72
PF12686	DUF3800	0.72
PF00589	Phage_integrase	0.72
PF13289	SIR2_2	0.72
PF10137	TIR-like	0.72
PF13673	Acetyltransf_10	0.72
PF14534	DUF4440	0.72
PF13751	DDE_Tnp_1_6	0.72
PF13358	DDE_3	0.72
PF01613	Flavin_Reduct	0.72
PF08241	Methyltransf_11	0.72
PF13676	TIR_2	0.72
PF04218	CENP-B_N	0.72
PF12973	Cupin_7	0.72
PF08980	DUF1883	0.72
PF13817	DDE_Tnp_IS66_C	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	2.17
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.45
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.45
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.72
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.72
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.72
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.72
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.72
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.72
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.72
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
All Organisms	root	All Organisms	26.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
cellular organisms	root	All Organisms → cellular organisms	26.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.84 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.35 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.87 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.17 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.17 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.17 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	2.17 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.17 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.17 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.17 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.72 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.72 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.17 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.90 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.45 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.72 %
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	0.72 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.72 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.72 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.17 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Paraburkholderia aspalathi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	1.45 %
Microvirga thermotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga thermotolerans	0.72 %
unclassified Lichenibacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium	0.72 %
Caballeronia calidae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.72 %
Azorhizobium doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.19 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.17 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Paraburkholderia aspalathi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	1.45 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.72 %
Lichenibacterium sp. 6Y81	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	0.72 %
Microvirga thermotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga thermotolerans	0.72 %
Caballeronia calidae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	0.72 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.72 %
Azorhizobium doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_11107395	Not Available	537	Open in IMG/M
3300004080\|Ga0062385_11290066	Not Available	502	Open in IMG/M
3300005178\|Ga0066688_10535394	Not Available	753	Open in IMG/M
3300005332\|Ga0066388_105702690	Not Available	630	Open in IMG/M
3300005363\|Ga0008090_10212261	Not Available	1042	Open in IMG/M
3300005439\|Ga0070711_100201750	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300005602\|Ga0070762_10443390	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005764\|Ga0066903_100339008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2419	Open in IMG/M
3300006175\|Ga0070712_101652902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300007258\|Ga0099793_10262219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	836	Open in IMG/M
3300009143\|Ga0099792_10264025	Not Available	1008	Open in IMG/M
3300010360\|Ga0126372_13070716	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300010361\|Ga0126378_11726316	Not Available	712	Open in IMG/M
3300010376\|Ga0126381_102174081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300010376\|Ga0126381_103498851	Not Available	617	Open in IMG/M
3300010398\|Ga0126383_11988382	Not Available	669	Open in IMG/M
3300012362\|Ga0137361_11461572	Not Available	606	Open in IMG/M
3300012917\|Ga0137395_11189016	Not Available	534	Open in IMG/M
3300016270\|Ga0182036_10342729	Not Available	1149	Open in IMG/M
3300016270\|Ga0182036_10880643	Not Available	733	Open in IMG/M
3300016270\|Ga0182036_11749256	Not Available	525	Open in IMG/M
3300016341\|Ga0182035_10412445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1137	Open in IMG/M
3300016341\|Ga0182035_11616107	Not Available	585	Open in IMG/M
3300016357\|Ga0182032_10180343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	1591	Open in IMG/M
3300016387\|Ga0182040_11420327	Not Available	588	Open in IMG/M
3300016404\|Ga0182037_10573656	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300016404\|Ga0182037_10722718	Not Available	854	Open in IMG/M
3300016404\|Ga0182037_10954394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	745	Open in IMG/M
3300016445\|Ga0182038_11142204	Not Available	693	Open in IMG/M
3300018468\|Ga0066662_10795823	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300020579\|Ga0210407_10425296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1039	Open in IMG/M
3300020580\|Ga0210403_10082040	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300020582\|Ga0210395_10223337	Not Available	1414	Open in IMG/M
3300021168\|Ga0210406_10468380	Not Available	1000	Open in IMG/M
3300021403\|Ga0210397_10296949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1186	Open in IMG/M
3300021405\|Ga0210387_10348444	Not Available	1308	Open in IMG/M
3300021478\|Ga0210402_11333528	Not Available	645	Open in IMG/M
3300021560\|Ga0126371_10358644	Not Available	1594	Open in IMG/M
3300022726\|Ga0242654_10350362	Not Available	555	Open in IMG/M
3300026377\|Ga0257171_1083597	Not Available	563	Open in IMG/M
3300026490\|Ga0257153_1018886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300027783\|Ga0209448_10122234	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300028047\|Ga0209526_10221752	Not Available	1303	Open in IMG/M
3300031231\|Ga0170824_111715374	Not Available	631	Open in IMG/M
3300031474\|Ga0170818_102127642	Not Available	701	Open in IMG/M
3300031545\|Ga0318541_10240276	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300031564\|Ga0318573_10671524	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300031572\|Ga0318515_10128662	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1342	Open in IMG/M
3300031573\|Ga0310915_10662807	Not Available	738	Open in IMG/M
3300031640\|Ga0318555_10696473	Not Available	549	Open in IMG/M
3300031668\|Ga0318542_10599597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	575	Open in IMG/M
3300031679\|Ga0318561_10486024	Not Available	680	Open in IMG/M
3300031680\|Ga0318574_10590711	Not Available	651	Open in IMG/M
3300031681\|Ga0318572_10128457	Not Available	1452	Open in IMG/M
3300031682\|Ga0318560_10186636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	1106	Open in IMG/M
3300031682\|Ga0318560_10439386	Not Available	706	Open in IMG/M
3300031719\|Ga0306917_11080495	Not Available	625	Open in IMG/M
3300031719\|Ga0306917_11226233	Not Available	582	Open in IMG/M
3300031736\|Ga0318501_10593274	Not Available	608	Open in IMG/M
3300031744\|Ga0306918_10988321	Not Available	654	Open in IMG/M
3300031744\|Ga0306918_11010042	Not Available	646	Open in IMG/M
3300031744\|Ga0306918_11011770	Not Available	645	Open in IMG/M
3300031744\|Ga0306918_11321405	Not Available	554	Open in IMG/M
3300031751\|Ga0318494_10557807	Not Available	669	Open in IMG/M
3300031753\|Ga0307477_10879318	Not Available	592	Open in IMG/M
3300031763\|Ga0318537_10182430	Not Available	782	Open in IMG/M
3300031777\|Ga0318543_10367472	Not Available	644	Open in IMG/M
3300031780\|Ga0318508_1167392	Not Available	626	Open in IMG/M
3300031792\|Ga0318529_10224616	Not Available	873	Open in IMG/M
3300031792\|Ga0318529_10350612	Not Available	687	Open in IMG/M
3300031793\|Ga0318548_10066911	All Organisms → cellular organisms → Bacteria → Proteobacteria	1675	Open in IMG/M
3300031795\|Ga0318557_10242280	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300031832\|Ga0318499_10285344	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	638	Open in IMG/M
3300031833\|Ga0310917_11091019	Not Available	533	Open in IMG/M
3300031859\|Ga0318527_10388457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300031859\|Ga0318527_10512578	Not Available	512	Open in IMG/M
3300031880\|Ga0318544_10350014	Not Available	574	Open in IMG/M
3300031893\|Ga0318536_10381682	Not Available	712	Open in IMG/M
3300031893\|Ga0318536_10424583	Not Available	671	Open in IMG/M
3300031896\|Ga0318551_10400221	Not Available	781	Open in IMG/M
3300031897\|Ga0318520_10479401	Not Available	767	Open in IMG/M
3300031897\|Ga0318520_10961605	Not Available	539	Open in IMG/M
3300031910\|Ga0306923_10414907	All Organisms → cellular organisms → Bacteria → Proteobacteria	1531	Open in IMG/M
3300031910\|Ga0306923_11051174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	881	Open in IMG/M
3300031912\|Ga0306921_11877559	Not Available	642	Open in IMG/M
3300031941\|Ga0310912_10105889	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300031942\|Ga0310916_11080828	Not Available	667	Open in IMG/M
3300031946\|Ga0310910_10104386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2109	Open in IMG/M
3300031946\|Ga0310910_10358440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1153	Open in IMG/M
3300031947\|Ga0310909_10529641	Not Available	987	Open in IMG/M
3300031947\|Ga0310909_11289110	Not Available	588	Open in IMG/M
3300031947\|Ga0310909_11502820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	536	Open in IMG/M
3300031954\|Ga0306926_11095543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300032035\|Ga0310911_10648742	Not Available	612	Open in IMG/M
3300032039\|Ga0318559_10584258	Not Available	521	Open in IMG/M
3300032051\|Ga0318532_10097323	Not Available	1036	Open in IMG/M
3300032051\|Ga0318532_10341195	Not Available	531	Open in IMG/M
3300032063\|Ga0318504_10024345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	2335	Open in IMG/M
3300032063\|Ga0318504_10199306	Not Available	934	Open in IMG/M
3300032063\|Ga0318504_10282197	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	784	Open in IMG/M
3300032066\|Ga0318514_10715908	Not Available	532	Open in IMG/M
3300032076\|Ga0306924_10188620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2367	Open in IMG/M
3300032090\|Ga0318518_10209975	Not Available	997	Open in IMG/M
3300032090\|Ga0318518_10515974	Not Available	612	Open in IMG/M
3300032094\|Ga0318540_10470272	Not Available	607	Open in IMG/M
3300032261\|Ga0306920_101569983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga thermotolerans	937	Open in IMG/M
3300033289\|Ga0310914_11178938	Not Available	667	Open in IMG/M
3300033289\|Ga0310914_11521934	Not Available	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.10%
Aquatic	Environmental → Aquatic	2.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.10%
Freshwater	Environmental → Aquatic → Freshwater	2.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.03%
Loam	Environmental → Terrestrial → Soil → Loam	5.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	80.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	57.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_111073951	3300004080	Bog Forest Soil	MTLGNAAAAKVRLIVWCKSCQHQVEPDPAEMAARYGAETSVLD*
Ga0062385_112900662	3300004080	Bog Forest Soil	MTLGIAAAAQVRLIVWCKTRQHQVEPDPAEMAARYGAETSVLDWREKLVCSKCGS*
Ga0066688_105353941	3300005178	Soil	MTLGNAAAARGPLIVWCKECQHQVEPDPAEMAVRDGAETPVPVWRERLVCSNAAAAKSTWS*
Ga0066388_1057026901	3300005332	Tropical Forest Soil	MTLGNAAAARVLIVWCRDCRHQVEPDPAETAEKYGAATSVLDWRDRLVC
Ga0066388_1057343391	3300005332	Tropical Forest Soil	MAIDREARGPPMTRGNAAAAQVRLIVRCKARQHQTESDPAEMAARYDAETPVLDWRKRLVCSR
Ga0008090_102122611	3300005363	Tropical Rainforest Soil	MTLGNASAARVRLIVWCKSCGHQVEPDPAETAARYGADTPVLDWR
Ga0070711_1002017503	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTLGNAAAARVRLIVWCKECQHQVEADPAKTAARYGAETPVLDWRERLVCSRCG
Ga0066687_101521713	3300005454	Soil	MTLGNAAAARDPLIVWCKECQHQVEPDPAEMAVRDGAETPVPVWRERLVCSNAAAAKSTWS*
Ga0070762_104433902	3300005602	Soil	MTLRNAATAHARLIVWCKECATTEPDPAELAARYGAETPVPDWRERLVCSR*
Ga0066903_1003390085	3300005764	Tropical Forest Soil	MTPGNAAANHVRLIVWCKQCQHKIEPDPAEMAARYGADTPVLDWRDRLV
Ga0070712_1016529021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTLGNAAAARVRFIVWCKECQHQVEPDAGEMAARYGAKTPVLDWRDRLICSRGGSRE
Ga0099793_102622191	3300007258	Vadose Zone Soil	MTLGNAADARERFIVWCKACQHQVEPDLAEMAERYGAGTAVLDCERLVLAVR*
Ga0099792_102640252	3300009143	Vadose Zone Soil	MTLGNAAKAELRLIVWCCSCGHQVEPDPAEAAQQCGADTPVLDWRERL
Ga0126380_100451681	3300010043	Tropical Forest Soil	MTLGNAARARVRPIVWCKACQHQVEPDPAEQAERYGRVPVPEWREGL
Ga0126372_130707163	3300010360	Tropical Forest Soil	MTLGGAATAGVRIIVWCRECTHQVEPDPSEVARRYGDATSVLDW
Ga0126378_117263161	3300010361	Tropical Forest Soil	MTLGAAAAAGVRLIVWCKECQHQVEPDPAEMATRYGAGTSVLDWRDRL
Ga0126381_1021740813	3300010376	Tropical Forest Soil	GPPMTLGSAAANHARIIVWCKRCRHQVGPDSAEMAARYGAAATVIGWR*
Ga0126381_1034988511	3300010376	Tropical Forest Soil	MKSPPGPPMTLGNAANAKVRLIVWCKACGHQVEPDPAEMARQYNAGTSVLDWRGRPV
Ga0126383_119883821	3300010398	Tropical Forest Soil	MTLGKAAAAGVRLIVWCKACQHQVEPDPAEMAERYGAGTSVLDWRDRLVCSRC
Ga0137361_114615721	3300012362	Vadose Zone Soil	MTLGDATKAELRLVVWCRSCKHQVEPDPAELVERQGADTPVLDWRNRLVCSKVAAGI*
Ga0137395_111890162	3300012917	Vadose Zone Soil	MKSQPGLPMTLGAAAAAQVRLIVWCKACQHQVEPDPGEMAARYGAEMPVLD*
Ga0182036_103427293	3300016270	Soil	MTLGAAAAAGVRLIVWCKEYQHQVEPDPNEMATRYGAETSVLDSRERLVCSRCGGRPIWS
Ga0182036_108806431	3300016270	Soil	MTLGAAAAAQVRLIVWCKACEHQVESDAAEMATRYGADTSVLDWRERLVC
Ga0182036_117492561	3300016270	Soil	KAELRLIVWCRGCGHQVQPDPAQLAEQYGANTPVLDWRER
Ga0182035_104124452	3300016341	Soil	MTLGAAAAAQVRLIVWCKKCRHQVEPDPAEMAARYGADTSVLD
Ga0182035_116161072	3300016341	Soil	MTLGNAAKPKVRLIVWCKTCGHQIEPDPAEMAARYGADTPVLDWRERLVCS
Ga0182032_101803431	3300016357	Soil	MTLSNAANAKVRLIVWCKECGHQVEPDPAEMAARYGADTPVLDWRDRLVCSR
Ga0182040_114203271	3300016387	Soil	MTLGVAAAARVRLIVWCKECVRQVEPAPEEMAARYGAETSILEWRKRLVCGDCGSHNT
Ga0182037_105736563	3300016404	Soil	MTLHNAANAKVRLIVWCKACGHQVEPDPAEMARQYGAATSVLDWRHRLVCSGCGG
Ga0182037_107227181	3300016404	Soil	MTLGAAAAAGVRLIVWCKECQHQVEPDPNEMATRYDADTSVLHWRERL
Ga0182037_109543942	3300016404	Soil	MTLGAAAATQVRLILWCKACQHQVEPDPAEMVARYGADTSVLD
Ga0182038_111422041	3300016445	Soil	MTFGAAAAAGVRLIVWCKKCGHQVEPDPSDLARRHGPATTVLDWRDRLLC
Ga0187808_104106461	3300017942	Freshwater Sediment	MKPEPGTPMTLGNAAAACVRLIVWCKACGHQVEPDPAAMAQRYGDDTPVIEWRERLVCS
Ga0066662_107958231	3300018468	Grasslands Soil	MTLGNAAAARGPLIVWCKECQHQVEPDPAEMAVRDGAETPVPVWRERLVCSNAAAAKSTW
Ga0210407_104252962	3300020579	Soil	MTLGNAAKAELQLIVWCHGCGHQVEPDPAEFVQRYGADTPVLDW
Ga0210403_100820401	3300020580	Soil	MTLGVAAAAGVRLIVSCKECQHQVERDPAEMATRYGAEMSVLDWRERLVC
Ga0210399_103191822	3300020581	Soil	MTLGNAATAGARLIVWCKECRHQVEPDPAAMADRYGAATTVPEWHERLRCSQCRP
Ga0210395_102233371	3300020582	Soil	MTLGSAAAAQVRLIVWCKACQHQVEPDPAEMAARYTADTSVIDWRERLVCSNR
Ga0210406_104683802	3300021168	Soil	AAAQVRLIVWCRQHQVDPDPGEMAARYGAETSVLDWRKRLVRSR
Ga0210408_101126503	3300021178	Soil	MTLGAAAAAGVRLIVWCQGCQHQVEPDPSEQARRYGEGTTVPD
Ga0210408_103019463	3300021178	Soil	MTLGNAATARARLIVWCKECRHQVEPDPAAMADRYGAATTVPEWHERLRCSQCRP
Ga0210397_102969493	3300021403	Soil	MTLGNPAAARVRLIVWCRKCQHRVEPDPAEMAARYGAETTVLDWREPARLFSL
Ga0210387_103088632	3300021405	Soil	MTLGVAAAAGVRLIVWCRDCQHQVEPDPAGQAQRQRAETTVLAWKDRPVCLQCGSREST
Ga0210387_103484442	3300021405	Soil	MTLVGAAAAQVRLTVWCKACQHQVEPDPAEMAARYGAETTVLDWRDRLVCSQCNR
Ga0210390_115841901	3300021474	Soil	MKSEPGPPMTLGDAAAAQVRLIVWCKECQHQVEPDPAEMAQRYGAATPVPDWRQRLVCSK
Ga0210402_108641412	3300021478	Soil	MKSEPGPPMTLGAAAAAGVRLIVWCQGCQHQVEPDPSEQARRYGEGTTVPD
Ga0210402_113335282	3300021478	Soil	MTLGNAAAAGVRLIDWCKECQHQVEPDPAGMAARYGAETPVPDWRERLICCKC
Ga0126371_103586441	3300021560	Tropical Forest Soil	MTLGNAAAAKVRLIVWCKTCSHQVEPDAGEHARRYGVATS
Ga0126371_109958162	3300021560	Tropical Forest Soil	MILEAAAAAQIRLIVWCKACQHSVVPDLAEMAARYGVDPSIPDWRECFVRLYVEGVR
Ga0242654_103503621	3300022726	Soil	MKPHRGPPMTLGNAAAVKVRLIVWCKACNHQVDPDPAEMAAYGADTSVLD
Ga0257171_10835972	3300026377	Soil	MTLGAAAAADVRLIVWSKICQHQVEPDPAEMAARYGAAITALDWRGRLVSSR
Ga0257153_10188862	3300026490	Soil	MTLGNAADARERFIVWCKACQHQVEPDLAEMAERYGAGTAVLDCERLVLAVR
Ga0209448_101222342	3300027783	Bog Forest Soil	PAMTLGSAAAAQVRLIVWCKACQHQVEPDPAEMARPYAADTEAGDTG
Ga0209526_102217522	3300028047	Forest Soil	MTLGSAAKAGLRLIVWCRGCQHQVEPDPAQLAERYGVETRVLDWHT
Ga0170824_1117153741	3300031231	Forest Soil	MTLGAAAAAQVRLIVWCKSCQHQVEPDPAEMAARYGADTSVLDWRERL
Ga0170818_1021276421	3300031474	Forest Soil	MTLGLAAAAGVRLIVWCKACQHQVEPDPNEMATSYGPDTSVYRART
Ga0318516_101247163	3300031543	Soil	MTLGAAAAAGVRLIVWCKKCQHLVELDLAEMAARYGEDTSTPDWRER
Ga0318541_102402762	3300031545	Soil	MNAYNRPAMTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSV
Ga0318573_104447681	3300031564	Soil	MTPGNAAMARVRLIARCKACWHRVEPDPIEMAARYGAETRALDWRERLVRSRLAQR
Ga0318573_106715242	3300031564	Soil	MTLGVAASAQVRLIVWCKKCQHQVEPDPGEMAARYGPDTSILKWR
Ga0318515_101286621	3300031572	Soil	MTLRAAAAAQVRLIVWCKTCGHQVEPDPAEMAARYGADT
Ga0310915_106628072	3300031573	Soil	MTLGVAAAAGVRLIVWCKECRHQVEPDPAAMAAWYGAETSVLDWRERL
Ga0318555_106964731	3300031640	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLVWR
Ga0318542_105995972	3300031668	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPAEIAALYGADTPVLN
Ga0318561_104860241	3300031679	Soil	MTLGNAAAARVTLIVWCKSCWRRVEPDPSEMGERYDAETTVLDWRERLMLAMRQS
Ga0318574_105907113	3300031680	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSVLDWRERLV
Ga0318572_101284571	3300031681	Soil	MTLGNAANAKVRLIVWCKACGHQVEPDPAEMAASYGANTSVLDWRDRLVCTRCG
Ga0318560_101866362	3300031682	Soil	MTLGVAASAQVRLIVWCKKCQHQVEPDPGEMAARYGPDTSILKWRQRLVC
Ga0318560_104393862	3300031682	Soil	MTLGNAAKPKVRLIVWCKTCGHQIEPDPAEMAARYGADTPVLD
Ga0306917_110804951	3300031719	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLVWRDRLV
Ga0306917_112262331	3300031719	Soil	LKPYRGPPMTLGAAAAAGVRLIVWCKECQHQVEPDPNEMATRYDADTSVLHWRERLV
Ga0318501_105932741	3300031736	Soil	MTLGNAAHAKVRLIVWCTTCGHQVEPDPVEMVARYGADTSVLDWRDRLVCLR
Ga0306918_109883211	3300031744	Soil	MTLSNAANAKVRLIVWCKECGHQVEPDPAEMAARYGADTPVLDWRDRL
Ga0306918_110100422	3300031744	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLVWRDRLVCSGCG
Ga0306918_110117701	3300031744	Soil	MTLGAAAAAQVRLIVWCKACEHQVESDAAEMATRYGADTSVLD
Ga0306918_113214051	3300031744	Soil	MTLGNAAKPKVRLIVWCKTCGHQIEPDPAEMAARYGADTPV
Ga0318494_105578071	3300031751	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSVLDW
Ga0307477_108793182	3300031753	Hardwood Forest Soil	MTLGGAAAAQVRLIVWCKACQHQVEPDPAEMAARYGADT
Ga0318537_101171313	3300031763	Soil	MKSPPGLPMTLGNAANAQVRLIVWCKTCGNQVEPDPIEMARQYGARTSVLDWRDRLV
Ga0318537_101824302	3300031763	Soil	MTLGNAANAKVRLIVWCKRCGRQVEPDPAEMAARYGENTPVLD
Ga0318509_105774491	3300031768	Soil	MTLGAAAAAGVRLIVWCKKCQHLVELDLAEMAARYGEDTSTPDWR
Ga0318543_103674722	3300031777	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPV
Ga0318566_105207102	3300031779	Soil	MTLGIAAAAGVRLIVWCKECRHQAEPDPAEMATRYGAETAVLDWRERLVCSRCG
Ga0318508_11673921	3300031780	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSV
Ga0318547_104807712	3300031781	Soil	MKPYRGPPLGVAAAAGVRLIVWCKECRYQVEPDPAEMAARYGAETSVLDWRERLVCSRC
Ga0318547_106698101	3300031781	Soil	MTLGAPAAAQVRLIVWCKACPHQVEPDPAEMAARYGADTSVLDWRERLVCSERGC
Ga0318529_102246161	3300031792	Soil	MTLAGAGTAGVRIIVWCKSCSHQTEPDPSAMAARYGAETLVLEWK
Ga0318529_103506121	3300031792	Soil	LKPYRGPPMTLGAAAAAGVRLIVWCKECQHQVEPDPNEMATRYGAETSVLD
Ga0318548_100669111	3300031793	Soil	MTLHNAANAKVRLIVWCKACGHQVEPDPAEMARQYGAATSVLDWRHRLVCSG
Ga0318557_102422803	3300031795	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLNWRDRLVCS
Ga0318567_106384072	3300031821	Soil	MKPYRGPPLGVAAAAGVRLIVWCKECRYQVEPDPAEMAARYGAETSVLDW
Ga0318499_102853441	3300031832	Soil	MTLRAAAAAQVRLIVWCKTCGHQVEPDPAEMAARYGADTSILD
Ga0310917_110910192	3300031833	Soil	MTLGNAANAKVRLIVWCKTCGHRVEPDPAEMVARYGADTPVLDWRDRLVCS
Ga0310917_111462531	3300031833	Soil	MTLGAVAVASVYSAGWCKACQHQVEPDPAEMAARPGAGALILDWCERLI
Ga0318527_103884572	3300031859	Soil	MTLGVPATAGVRLMVWCKECQHQVEPDPAEMATRYGAETSVLDWRERLAEETVAGKIGSA
Ga0318527_105125781	3300031859	Soil	MKSQPGPPMTLGNAANAKVRLIVWCKACGHQVEPDPAEMARQYGAATSVLDWR
Ga0306919_111474691	3300031879	Soil	MTLGNAKNAKVRLIVWCKTCGHQVAPDPVEMAARYGADTS
Ga0318544_103500142	3300031880	Soil	MTLSNAANAKVRLIVWCKTCRHQVEPDPAEMVARYGADTPVLVWRDRLVC
Ga0318536_103816823	3300031893	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSVLDWRERLVCSECG
Ga0318536_104245831	3300031893	Soil	MKSPPGPPMTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLN
Ga0318551_104002211	3300031896	Soil	MKSLPGPPMTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADTPVLVWRDRLVCS
Ga0318520_104794011	3300031897	Soil	MTLGAAAAAGVRLIVWCKEYQHQVEPDPNEMATRYGAETSVLDS
Ga0318520_109616051	3300031897	Soil	MTLGNAAHAKVRLIVWCTTCGHQVEPDPVEMVARYGADTSVLDWRDRLV
Ga0306923_104149072	3300031910	Soil	VAKSWAQVRLIVWCKECVRPVEPDPGEMAARYGADTSILEWRQRLVCSACGSRQVDMVLSGAQR
Ga0306923_110511741	3300031910	Soil	MTLGNAAKAELRLIVWCRGCGHQVQPDPAQLAEQYGANTPVLDWRER
Ga0306921_118775591	3300031912	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDPAEMAEQYGADTSILDWREQLVCS
Ga0310912_101058894	3300031941	Soil	MTLGAAAAAGVRLIVWCKEFRHRVEPDPAEMATRYGAETPVLDWRDRLMCS
Ga0310916_107677302	3300031942	Soil	MTLGVAAAAGVRLIVWCKECRHQVEPDPAEMATRYGAETSVLDWRERLVCSRCGGR
Ga0310916_110808281	3300031942	Soil	VAKSWAQVRLIVWCKECVRPVEPDPGEMAARYGADTSILEWRQRLVCSACGS
Ga0310910_101043863	3300031946	Soil	MTLGNTANAKVRLIVWCKTCGHQVEPDPAEMAARYGANTSVLDWRKRLVCSG
Ga0310910_103584402	3300031946	Soil	MTLGVPATAGVRLMVWCKECQHQVEPDPAEMATWYGAEIFVLDWRERLICSRRGS
Ga0310909_100325763	3300031947	Soil	MTPGNAATARVRLIARCKACWHRVEPDPIEMAARYGAETRALDWRERLVRSRLAQR
Ga0310909_105296413	3300031947	Soil	MTLGNAANAKVRLIVWCKTCGHRVEPNPAEMAASYGANTSVLDWRDR
Ga0310909_112891102	3300031947	Soil	MTLGNAANAKVRLIVWCKACGHQVEPDPTEMVARYGADTPVLDWHDRL
Ga0310909_115028202	3300031947	Soil	MTLGVAAAAGVRLIVWCKECQHQVEPDPTEMTSRYGAETSVLDWRERLV
Ga0306926_110955432	3300031954	Soil	AAAQIRLIVWCKACQRKVERNPAEMAARYGADTSVLD
Ga0318530_102425684	3300031959	Soil	MTLGNAKNAKVRLIVWCKTCGHQVAPDPVEMAARYGAD
Ga0306922_102895004	3300032001	Soil	MTLGPAVAAQVRLQTLQHQVEPDPAEMAARYGTDTSVLDWRGAGRLR
Ga0306922_120208241	3300032001	Soil	CGPPMTLGVAAAAGVRLIVWCKECRHQVEPGPTEMATRYGAETAVLDWCERLVCS
Ga0310911_106487422	3300032035	Soil	MTLGAAAAAQVRLIVWCKACQHQVEPDAAEMATRYGADTSVLD
Ga0318559_105842581	3300032039	Soil	MTLGNAAKAKVRLILWCEACARQVEPDPGEMAARYGADTSVLE
Ga0318556_104058673	3300032043	Soil	MTLGNAANAKVRLIVWCKACGHQVEPDADEMAARYGADRSVLDWRDRLVC
Ga0318532_100973231	3300032051	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSVLDWRERLVCS
Ga0318532_103411952	3300032051	Soil	MKSPPGPPMTLGNAANAKVRLIGWCKTCGHQVEPDPAEMAASHGANTSVLDWRDRLV
Ga0318504_100243451	3300032063	Soil	MTLGVAASAQVRLIVWCKKCQHQVEPDPGEMAARYGPDTSILKW
Ga0318504_101993064	3300032063	Soil	MTLGTAAAAQVRLIVWCKACQHQVEPDSAEMAARYGADTSVLD
Ga0318504_102821972	3300032063	Soil	MTLRAAAAAQVRLIVWCKTCGHQVEPDPAEMAARYGADTSILDWREKLVYSRCG
Ga0318514_107159082	3300032066	Soil	MTLGNAAKPKVRLIVWCKTCGHQIEPDPAEMAARYGENTPVLD
Ga0306924_100726324	3300032076	Soil	MRLRAAASARVRLIVWCKECRHQVAPDPAEMATRYSAETSVLDWRGRLVYSAFIRV
Ga0306924_101886201	3300032076	Soil	MTLGVPATAGVRLMVWCKECQHQVEPDPAEMATWYGAEIFVLDWRERLICSRRGSREV
Ga0318518_102099752	3300032090	Soil	MTLGNAANAKVRLIVWCKACGHQVEPDPAEMAASYGANTSVLDWRDRLVCTR
Ga0318518_105159742	3300032090	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPAEIAALY
Ga0318540_104702721	3300032094	Soil	MTLGNAANAKVRLIVWCKTCGHQVEPDPVEMVARYGADT
Ga0306920_1015699831	3300032261	Soil	MKPYRGPPMTLGTAAAAGVRLIVWCKECRHQVEPDPIEMAARYGAETAVLD
Ga0306920_1016624472	3300032261	Soil	MTLGVAAAAGVRLIVWCKECRHQVEPGPTEMATRYGAETAVLDWCERLVCS
Ga0310914_111789381	3300033289	Soil	MTFGAAAVAQVRLIVWCKACQHQVEPDPAEMAARYGAETSALDWRE
Ga0310914_115219342	3300033289	Soil	MTLGNAAKPKVRLIVWCKTCGHQIEPDPAEMAARYGADTPVLDWRERLVCSGCGGRQ
Ga0318519_102176234	3300033290	Soil	MKPYRGPPLGVAAAAGVRLIVWCKECRYQVEPDPAEMAARYGAETSVLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055909

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences