Metagenome / Metatranscriptome Family F055945

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F055945
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	55 residues
Representative Sequence	MSLHRLFSVSSAVNYVAPSQVSMVCSLLVTSGLVMLGRFPMVASGMRQMF
Number of Associated Samples	93
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.85 %
% of genes near scaffold ends (potentially truncated)	42.03 %
% of genes from short scaffolds (< 2000 bps)	87.68 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (52.899 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (13.043 % of family members)
Environment Ontology (ENVO)	Unclassified (22.464 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.97% β-sheet: 0.00% Coil/Unstructured: 41.03%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00872	Transposase_mut	3.62
PF09361	Phasin_2	2.90
PF01384	PHO4	2.17
PF07568	HisKA_2	1.45
PF04392	ABC_sub_bind	1.45
PF11752	DUF3309	1.45
PF04226	Transgly_assoc	1.45
PF13701	DDE_Tnp_1_4	1.45
PF12616	DUF3775	1.45
PF00982	Glyco_transf_20	1.45
PF01841	Transglut_core	1.45
PF13458	Peripla_BP_6	0.72
PF08281	Sigma70_r4_2	0.72
PF12399	BCA_ABC_TP_C	0.72
PF09423	PhoD	0.72
PF11578	DUF3237	0.72
PF16576	HlyD_D23	0.72
PF02397	Bac_transf	0.72
PF13545	HTH_Crp_2	0.72
PF00011	HSP20	0.72
PF03473	MOSC	0.72
PF02371	Transposase_20	0.72
PF09335	SNARE_assoc	0.72
PF01161	PBP	0.72
PF13546	DDE_5	0.72
PF13683	rve_3	0.72
PF00487	FA_desaturase	0.72
PF01548	DEDD_Tnp_IS110	0.72
PF07886	BA14K	0.72
PF16242	Pyrid_ox_like	0.72
PF00216	Bac_DNA_binding	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	3.62
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	2.17
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	1.45
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.45
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.45
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.45
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	1.45
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.72
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.72
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.72
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.72
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.72
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.72
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.72
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
All Organisms	root	All Organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
cellular organisms	root	All Organisms → cellular organisms	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.68 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.78 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.72 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.29 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.17 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.45 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.72 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.72 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	1.45 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.72 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.72 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.72 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.72 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.72 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.72 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.72 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.72 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Lacipirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1.45 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %
Sulfitobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter	0.72 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.72 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.72 %
Rhodoblastus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus	0.72 %
Defluviicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus	0.72 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.17 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Botrimarina	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Botrimarina	1.45 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.72 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.72 %
Acidisphaera rubrifaciens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens	0.72 %
Rhodoblastus sphagnicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus sphagnicola	0.72 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.72 %
Sulfitobacter delicatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter → Sulfitobacter delicatus	0.72 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.72 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Botrimarina colliarenosi	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Botrimarina → Botrimarina colliarenosi	1.45 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.72 %
Acidisphaera rubrifaciens HS-AP3	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens → Acidisphaera rubrifaciens HS-AP3	0.72 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.72 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.72 %
Bradyrhizobium sp. Ghvi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ghvi	0.72 %
Sinorhizobium medicae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	0.72 %
Bradyrhizobium sp. BTAi1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	0.72 %
Rhodoblastus sphagnicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus sphagnicola	0.72 %
Sulfitobacter delicatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter → Sulfitobacter delicatus	0.72 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.72 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.17 %
Botrimarina colliarenosi	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Botrimarina → Botrimarina colliarenosi	1.45 %
Ktedonobacter sp. 13_1_20CM_3_54_15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_1_20CM_3_54_15	0.72 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	0.72 %
Acidisphaera rubrifaciens HS-AP3	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens → Acidisphaera rubrifaciens HS-AP3	0.72 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.72 %
Bradyrhizobium sp. Ghvi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ghvi	0.72 %
Sinorhizobium medicae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	0.72 %
Bradyrhizobium sp. BTAi1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	0.72 %
Rhodoblastus sphagnicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus sphagnicola	0.72 %
Sulfitobacter delicatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter → Sulfitobacter delicatus	0.72 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.72 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.72 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101438705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	583	Open in IMG/M
3300004091\|Ga0062387_100974879	Not Available	648	Open in IMG/M
3300004120\|Ga0058901_1570957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300004152\|Ga0062386_100298282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1284	Open in IMG/M
3300004152\|Ga0062386_101112074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	656	Open in IMG/M
3300004631\|Ga0058899_12162345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	933	Open in IMG/M
3300004631\|Ga0058899_12245998	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005330\|Ga0070690_100193169	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Botrimarina → Botrimarina colliarenosi	1412	Open in IMG/M
3300005339\|Ga0070660_100880402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	755	Open in IMG/M
3300005457\|Ga0070662_100183978	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Botrimarina → Botrimarina colliarenosi	1649	Open in IMG/M
3300005844\|Ga0068862_100479599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1177	Open in IMG/M
3300006050\|Ga0075028_100526847	Not Available	693	Open in IMG/M
3300006052\|Ga0075029_100326831	Not Available	984	Open in IMG/M
3300006059\|Ga0075017_100051875	Not Available	2760	Open in IMG/M
3300006059\|Ga0075017_100113241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ghvi	1901	Open in IMG/M
3300006059\|Ga0075017_101206028	Not Available	593	Open in IMG/M
3300006086\|Ga0075019_10656662	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300006086\|Ga0075019_10952461	Not Available	552	Open in IMG/M
3300006174\|Ga0075014_101023347	Not Available	502	Open in IMG/M
3300006176\|Ga0070765_100054024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3293	Open in IMG/M
3300006176\|Ga0070765_100359029	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300006893\|Ga0073928_10036960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4579	Open in IMG/M
3300006893\|Ga0073928_10135941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2002	Open in IMG/M
3300006893\|Ga0073928_10208234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1526	Open in IMG/M
3300006893\|Ga0073928_10219783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1473	Open in IMG/M
3300006893\|Ga0073928_10899674	Not Available	607	Open in IMG/M
3300006893\|Ga0073928_11126578	Not Available	531	Open in IMG/M
3300007982\|Ga0102924_1392076	Not Available	524	Open in IMG/M
3300009520\|Ga0116214_1249945	Not Available	674	Open in IMG/M
3300009521\|Ga0116222_1331384	Not Available	659	Open in IMG/M
3300009522\|Ga0116218_1247574	Not Available	801	Open in IMG/M
3300009621\|Ga0116116_1047628	Not Available	1310	Open in IMG/M
3300009646\|Ga0116132_1113634	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300009698\|Ga0116216_10107670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1715	Open in IMG/M
3300009824\|Ga0116219_10803245	Not Available	513	Open in IMG/M
3300010379\|Ga0136449_100226431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3509	Open in IMG/M
3300010379\|Ga0136449_100286127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3021	Open in IMG/M
3300010379\|Ga0136449_100795657	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300010379\|Ga0136449_100908695	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300010379\|Ga0136449_101057521	Not Available	1298	Open in IMG/M
3300010379\|Ga0136449_101263011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1156	Open in IMG/M
3300010379\|Ga0136449_101659398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300011120\|Ga0150983_10628332	Not Available	676	Open in IMG/M
3300011120\|Ga0150983_13010365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300012004\|Ga0120134_1029660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300012955\|Ga0164298_11618053	Not Available	511	Open in IMG/M
3300012961\|Ga0164302_10996008	Not Available	652	Open in IMG/M
3300012987\|Ga0164307_10859293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	726	Open in IMG/M
3300014489\|Ga0182018_10254442	Not Available	966	Open in IMG/M
3300014501\|Ga0182024_11514064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	765	Open in IMG/M
3300014501\|Ga0182024_12585472	Not Available	545	Open in IMG/M
3300017822\|Ga0187802_10013451	All Organisms → cellular organisms → Bacteria	2698	Open in IMG/M
3300017823\|Ga0187818_10340152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300017924\|Ga0187820_1000738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7224	Open in IMG/M
3300017924\|Ga0187820_1191976	Not Available	634	Open in IMG/M
3300017924\|Ga0187820_1209492	Not Available	611	Open in IMG/M
3300017928\|Ga0187806_1251849	Not Available	611	Open in IMG/M
3300017943\|Ga0187819_10259371	Not Available	1016	Open in IMG/M
3300017955\|Ga0187817_10297631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1029	Open in IMG/M
3300017955\|Ga0187817_10646130	Not Available	675	Open in IMG/M
3300017955\|Ga0187817_10716929	Not Available	638	Open in IMG/M
3300017955\|Ga0187817_11094480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300018001\|Ga0187815_10297566	Not Available	684	Open in IMG/M
3300018007\|Ga0187805_10225415	Not Available	858	Open in IMG/M
3300018007\|Ga0187805_10316725	Not Available	718	Open in IMG/M
3300018007\|Ga0187805_10363353	Not Available	669	Open in IMG/M
3300018008\|Ga0187888_1137536	Not Available	1009	Open in IMG/M
3300018017\|Ga0187872_10203695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	911	Open in IMG/M
3300018017\|Ga0187872_10264644	Not Available	765	Open in IMG/M
3300018017\|Ga0187872_10367157	Not Available	615	Open in IMG/M
3300018019\|Ga0187874_10256062	Not Available	717	Open in IMG/M
3300018022\|Ga0187864_10256210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300018026\|Ga0187857_10376734	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300018035\|Ga0187875_10437464	Not Available	697	Open in IMG/M
3300018044\|Ga0187890_10259001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	979	Open in IMG/M
3300018057\|Ga0187858_10385836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	873	Open in IMG/M
3300018057\|Ga0187858_10492974	Not Available	750	Open in IMG/M
3300018057\|Ga0187858_10757044	Not Available	577	Open in IMG/M
3300020150\|Ga0187768_1084083	Not Available	720	Open in IMG/M
3300020581\|Ga0210399_11353507	Not Available	558	Open in IMG/M
3300020582\|Ga0210395_10090116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2264	Open in IMG/M
3300020582\|Ga0210395_11044217	Not Available	604	Open in IMG/M
3300020583\|Ga0210401_10542459	Not Available	1025	Open in IMG/M
3300020583\|Ga0210401_10767178	Not Available	825	Open in IMG/M
3300021168\|Ga0210406_10115157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2275	Open in IMG/M
3300021168\|Ga0210406_10185995	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300021171\|Ga0210405_11258013	Not Available	545	Open in IMG/M
3300021178\|Ga0210408_10907565	Not Available	685	Open in IMG/M
3300021180\|Ga0210396_10402918	Not Available	1203	Open in IMG/M
3300021406\|Ga0210386_11276027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300021407\|Ga0210383_10099377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2448	Open in IMG/M
3300021474\|Ga0210390_10466746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_1_20CM_3_54_15	1065	Open in IMG/M
3300021477\|Ga0210398_11269833	Not Available	580	Open in IMG/M
3300021479\|Ga0210410_10955078	Not Available	745	Open in IMG/M
3300022557\|Ga0212123_10010802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12730	Open in IMG/M
3300022557\|Ga0212123_10102564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2331	Open in IMG/M
3300022557\|Ga0212123_10427016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	880	Open in IMG/M
3300022557\|Ga0212123_10467075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus sphagnicola	827	Open in IMG/M
3300022557\|Ga0212123_10646467	Not Available	659	Open in IMG/M
3300022557\|Ga0212123_10879921	Not Available	529	Open in IMG/M
3300023088\|Ga0224555_1184770	Not Available	581	Open in IMG/M
3300025134\|Ga0207416_1077061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1269	Open in IMG/M
3300025320\|Ga0209171_10328784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	805	Open in IMG/M
3300025419\|Ga0208036_1057916	Not Available	644	Open in IMG/M
3300025498\|Ga0208819_1132042	Not Available	509	Open in IMG/M
3300025501\|Ga0208563_1059234	Not Available	799	Open in IMG/M
3300025507\|Ga0208188_1063223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300025907\|Ga0207645_10685093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sulfitobacter → Sulfitobacter delicatus	697	Open in IMG/M
3300025911\|Ga0207654_10413433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	940	Open in IMG/M
3300026088\|Ga0207641_10381566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens → Acidisphaera rubrifaciens HS-AP3	1350	Open in IMG/M
3300027108\|Ga0207946_107618	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300027174\|Ga0207948_1021740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300027645\|Ga0209117_1063056	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300027662\|Ga0208565_1043058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1478	Open in IMG/M
3300027667\|Ga0209009_1015175	Not Available	1843	Open in IMG/M
3300027783\|Ga0209448_10302485	Not Available	524	Open in IMG/M
3300027854\|Ga0209517_10311618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300027854\|Ga0209517_10575392	Not Available	601	Open in IMG/M
3300027855\|Ga0209693_10627173	Not Available	506	Open in IMG/M
3300027884\|Ga0209275_10794524	Not Available	546	Open in IMG/M
3300027898\|Ga0209067_10418188	Not Available	752	Open in IMG/M
3300028906\|Ga0308309_10937121	Not Available	751	Open in IMG/M
3300029817\|Ga0247275_1174006	Not Available	532	Open in IMG/M
3300030494\|Ga0310037_10196119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	897	Open in IMG/M
3300030813\|Ga0265750_1046735	Not Available	644	Open in IMG/M
3300030878\|Ga0265770_1130249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031090\|Ga0265760_10012212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2455	Open in IMG/M
3300031708\|Ga0310686_108046281	Not Available	527	Open in IMG/M
3300031708\|Ga0310686_108114002	Not Available	853	Open in IMG/M
3300031708\|Ga0310686_117486806	Not Available	568	Open in IMG/M
3300032160\|Ga0311301_10079229	All Organisms → cellular organisms → Bacteria	6768	Open in IMG/M
3300032160\|Ga0311301_10995268	Not Available	1110	Open in IMG/M
3300032515\|Ga0348332_13406404	Not Available	599	Open in IMG/M
3300032515\|Ga0348332_13941003	Not Available	504	Open in IMG/M
3300032515\|Ga0348332_14515840	Not Available	721	Open in IMG/M
3300033405\|Ga0326727_10809306	Not Available	721	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.65%
Host-Associated	Host-Associated	4.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Aquatic	Environmental → Aquatic	45.65%
Plants	Host-Associated → Plants	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.38%
Freshwater	Environmental → Aquatic → Freshwater	27.54%
Thermal Springs	Environmental → Aquatic → Thermal Springs	11.59%
Sediment	Environmental → Aquatic → Sediment	6.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.17%
Peat	Environmental → Terrestrial → Peat	1.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	27.54%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	11.59%
Loam	Environmental → Terrestrial → Soil → Loam	11.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.29%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	11.59%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	11.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.52%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.35%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.17%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.45%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.04%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	11.59%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	11.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.25%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.52%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.72%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027108	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1014387052	3300002245	Forest Soil	MELFFAVLFKMGFHRLLSVSSGVNHMASSYVSMVRSFLMTSGLMMLGRFPVVASGMGQMF
Ga0062387_1009748792	3300004091	Bog Forest Soil	MSLNRLFSVSPAVNYVAPRYVSMMCSLLVSSGLMMLGRFPVMACS
Ga0058901_15709571	3300004120	Forest Soil	VLFEMGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQMF*
Ga0062386_1002982822	3300004152	Bog Forest Soil	MSLHCLFRVSSAVNYVTPSYVSMVCSLLVTSGLVMFGRFPVVASGVRQMF*
Ga0062386_1011120741	3300004152	Bog Forest Soil	VLFEVGLHRLFSVSPAVNYVAPSHVSMVCSLLVTSGLVMLGRFPVMACGM
Ga0058899_121623451	3300004631	Forest Soil	MSLHCLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFPVVASGVRQMF*
Ga0058899_122459982	3300004631	Forest Soil	MGFHRLFSVSSAVNYVAPSDVSMVCRLLVTSGLVMLSRFPVVVSGMRQMFCCFLVMLRSFL*
Ga0070690_1001931691	3300005330	Switchgrass Rhizosphere	VVFKMSLNRVFSVCPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF*
Ga0070660_1008804021	3300005339	Corn Rhizosphere	MSLNRVFSVCPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF*
Ga0070662_1001839782	3300005457	Corn Rhizosphere	MSLNRVFSVSPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF*
Ga0068862_1004795993	3300005844	Switchgrass Rhizosphere	MSLDRVFSVSPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF*
Ga0075028_1005268472	3300006050	Watersheds	MGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQMF*
Ga0075029_1003268312	3300006052	Watersheds	SCTNYVVPCYVRMVCSLLVTRGLVMLSRFVVVASGACQMF*
Ga0075017_1000518756	3300006059	Watersheds	MGLHRLFSVSPAVNYVAPSYVSMVCSLFVTSGLVMLGRFPVMACGMRQML*
Ga0075017_1001132413	3300006059	Watersheds	MGLHRLFSVSPAVNYVAPSYVSMVGSLLVTSGLVMLGRFPVMACGMRQML*
Ga0075017_1012060281	3300006059	Watersheds	ELELFFAVRFQMGFHRLFSVSSPVNYVAPSDVSMVCRLLVTSGLVMLSRFPVVVGGMRQMF*
Ga0075019_106566621	3300006086	Watersheds	QARRHRLFSVSSCTNYLVPCCVRMVYSLLVTRGLVMLSRFVVVASGACQMF*
Ga0075019_109524611	3300006086	Watersheds	MVFSELFFAVLFEMGLHRLFSMSPAVNYVAPSHVGMVCSLLVTSGLVMLSRFPVVASGMRQMF*
Ga0075014_1010233472	3300006174	Watersheds	FFAVLFEMGLHRLFSVSSAVNYVAPSHVGMVCSLLVTSSLVMLSRFPVMARGVRQMF*
Ga0070765_1000540245	3300006176	Soil	MGFHRLFSVSSAVNYVAPCDVSMVCRPFVTSGLVMLSRFPVVVGGMRQMF*
Ga0070765_1003590292	3300006176	Soil	MSLNRLFSVSPAVNYVAPRYVSMMCSLLVSSGLMMLGRFPVMACSMRQMF*
Ga0073928_100369601	3300006893	Iron-Sulfur Acid Spring	VGRLREAAYFFELELFFAMLFKMSLHRLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFPVVASGVRQMF*
Ga0073928_101359411	3300006893	Iron-Sulfur Acid Spring	LFSMSPAVNYVAPRYVSMVCSLLVSSGLMMLGRFPVMACSMRQMF*
Ga0073928_102082341	3300006893	Iron-Sulfur Acid Spring	MSHSRLFSMSPAVNYVAPRYVSMVCSLLVSSGLMMLGRFPVMAC
Ga0073928_102197832	3300006893	Iron-Sulfur Acid Spring	MGLNRLFSVSPAVNYVAPRYMSMMCSLLVSSGLMMLGRFPVMTCSMRQMF*
Ga0073928_108996742	3300006893	Iron-Sulfur Acid Spring	EMGLHLLFSVSPAVNYVAPRHLRMVCSLLVTSGLVLLSRVPVVASGMRQMF*
Ga0073928_111265781	3300006893	Iron-Sulfur Acid Spring	MSLNRLFSVSPAVNYVAPRYVSMVCSLLVSSGLMMLGSFPVMA
Ga0102924_12254153	3300007982	Iron-Sulfur Acid Spring	MGLNRLFSVSPAVNYVAPRYMSMMCSLLVSSGLMMLGRF
Ga0102924_13920761	3300007982	Iron-Sulfur Acid Spring	MSLNRLFSVSPAVNYMAPRYVSMVCSLLVSSGLMMLGRFPVMACSMRQMF*
Ga0116214_12499451	3300009520	Peatlands Soil	FFAVLFEMSLHCLFRVSSAVNYVAPSYVSMVRSLLVTSGLVMFGRFPVMASGVRQMF*
Ga0116222_13313841	3300009521	Peatlands Soil	YRLFRVSPAVNYVAPSYVSMVCSLLVTSGLVMFGRFAVVVGGMCQMF*
Ga0116218_12475741	3300009522	Peatlands Soil	MELFFAVLFKMGFHRLLSVSSGVNHMASSYVSMVRSFLMTSGLMMLGRFPVVA
Ga0116116_10476281	3300009621	Peatland	LAVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF*
Ga0116132_11136341	3300009646	Peatland	LRELELFLAVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF*
Ga0116216_101076703	3300009698	Peatlands Soil	LSLDLFFAVLFEMSLHCLFRVSSAVNYVAPSYVSMVRSLLVTSGLVMFGRFPVMASGVRQMF*
Ga0116219_108032451	3300009824	Peatlands Soil	LDLLFAVLFEMGLNRFFSVSSCVNCVAPSYVSMVCSLLVTSALVMLSRFSMVASSMRHVF
Ga0136449_1002264316	3300010379	Peatlands Soil	MVFSELFFAVLFEMGLHRLFSVSSAVNYVAPSHVGVVCSLLVTSSLVMLSRFPVVARGVRQMF*
Ga0136449_1002861276	3300010379	Peatlands Soil	LDEVRRNEQIEAILLLELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCGLLVTSGLVMLSRFPVMACGMGQMF*
Ga0136449_1007956574	3300010379	Peatlands Soil	MEYQSSELFFAVLFEMGLHRLFSMSPAVNYVAPSHVRMVCSLLVTSGFVMLSRFPVVASGMRQMF*
Ga0136449_1009086953	3300010379	Peatlands Soil	AVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF*
Ga0136449_1010575211	3300010379	Peatlands Soil	RELELFFAVLFEMSLHCFFRVSSAENYVAPSYVSMVCCLLVTSGLMMLGCFPVVASGMRQMF*
Ga0136449_1012630111	3300010379	Peatlands Soil	VLFEMSLHRLFRVSSAVNYVAPSHVSMVCSLLVTSSLVMLCRFSVVASGMREMFGCLLVMFRSFL*
Ga0136449_1016593983	3300010379	Peatlands Soil	FAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMFSRFPVMACGMRQMF*
Ga0150983_106283321	3300011120	Forest Soil	LNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQMF*
Ga0150983_130103652	3300011120	Forest Soil	MSLNRVFSVSPAVNYVAPRYVSMMCSLLVSSGLMMLGRFPVMACSM
Ga0120134_10296602	3300012004	Permafrost	MPPDKIDGELELFFAVRFQMGFHRLFSVSSAVNYVASSDVSMVCRLLVTSGLVMLSRFPVVVGGMRQMF*
Ga0164298_116180531	3300012955	Soil	ARPTFVSRLRKRSTFSISELFFSVLFEMSVHRLFRVSSAVNYVAPSHVSMVSSLLVTSSLVMLCRFSVVPSGVREMFGCLLVMFRSFL*
Ga0164302_109960081	3300012961	Soil	LFFAVVFKMSLNRVFSVSPAVNYVAPLSVSMMCSFLVSSGLMMLGRLPVMACSMRQMF*
Ga0164307_108592931	3300012987	Soil	MSLHRFFRVSSAVNYVAPSHVSMVSSLLVTSSLVMLCRFSVVPSGVREMF
Ga0182018_102544422	3300014489	Palsa	MELFFAMLFEMGLHRLFSVSSCVNYVAPSCVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0182024_115140642	3300014501	Permafrost	VVFEMSLHRLFRVSSAENYVAPGYVRMMRRLLVTSGLMMLGRFPVVVSGMRQMF*
Ga0182024_125854721	3300014501	Permafrost	LFRVSSAENYVAPSYVSMVCRLLVTPGLVMLGRFPVVASRMRQMF*
Ga0187802_100134514	3300017822	Freshwater Sediment	VLFEMSFHRLFRVSSTENYVASSYVSMVCSLLVTSGFVMLGRFPVMASGMRQMF
Ga0187818_103401521	3300017823	Freshwater Sediment	MGRDASSLRARRLGLHRIFSVSPAVNYVAPSQVSMVCSLLVTSSLVMLGRFPVMACGMCKMF
Ga0187820_10007384	3300017924	Freshwater Sediment	VLFEMSLHRLFRVPSAENCVTPSYVSVVCSLLVTSSLMMFGRFPVVASGMRQMFRCFLVMPCSFL
Ga0187820_11919761	3300017924	Freshwater Sediment	MSFHRLFRVSSTENYVASSYVSMVCSLLVTSGFVMLGRFPVMASGMRQMF
Ga0187820_12094922	3300017924	Freshwater Sediment	MSLHCLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFTVVASGVRQMF
Ga0187806_12518491	3300017928	Freshwater Sediment	VLFEMSLHRLFRVPSAENCVAPSYVSVVCSLLVTSGLMMFGRFPMVASGMR
Ga0187801_102792082	3300017933	Freshwater Sediment	MSLHRLFRVPSAENCVTPSYVSVVCSLLVTSGLVMLGRFPMVA
Ga0187819_102593711	3300017943	Freshwater Sediment	MGLHRLFSVFSCMNYVASSYVSMMCSLLVTAGPVMFSRFLMVASGVRQML
Ga0187817_102976312	3300017955	Freshwater Sediment	MSLHCLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFPVVASGVRQMF
Ga0187817_106461301	3300017955	Freshwater Sediment	MSLHCLFRVSSAKNYVAPSYVSVVCSLLVTSGLVMLRRFAVVASGMRQMF
Ga0187817_107169292	3300017955	Freshwater Sediment	GWKWSRTQTTNCLWDLFFAVLFEMSLHRLFRVPSAENCVAPSYVSVVCSLLVTSGLMMFGRFPMVASGMRQMF
Ga0187817_110944801	3300017955	Freshwater Sediment	MSLHRLFSVSSAVNYVAPSQVSMVCSLLVTSGLVMLGRFPMVASGMRQMF
Ga0187815_102975662	3300018001	Freshwater Sediment	QTTNCLWDLFFAVLFEMSLHRLFRVPSGENCVAPSYVSVVCSLLVTSGLVMLGRFAVVASGMRQMF
Ga0187805_102254152	3300018007	Freshwater Sediment	LELFFAVLFKMSFHRLLSVSSGVNHMAPSYVSMMCSFLMTSGLMMLGRFPVV
Ga0187805_103167251	3300018007	Freshwater Sediment	VLFEMSFHRLFRVSSTENYVASSYVSMVCGLLVASGRVMLSRFLMVSSGMC
Ga0187805_103633531	3300018007	Freshwater Sediment	MSLHRLFRVPSAENCVAPSYVSVVCSLLVTSGLVMLGRFPVVAGGVRQMF
Ga0187888_11375363	3300018008	Peatland	AWAMPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0187872_102036952	3300018017	Peatland	MGFHRLFSVSSAENYVAPSYVSMVCSLLVTPGLVMLGRFPVVASGLRQMF
Ga0187872_102646442	3300018017	Peatland	MPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0187872_103671571	3300018017	Peatland	MLFNVCLHRLFSVFSSENRVAPRYVSMVCGLLVSSGLVMLGRFAVVASGKRQMFRRFPV
Ga0187874_102560621	3300018019	Peatland	AVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF
Ga0187864_102562101	3300018022	Peatland	MPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVM
Ga0187857_103767341	3300018026	Peatland	MSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF
Ga0187875_104374642	3300018035	Peatland	REGGLVWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0187890_102590012	3300018044	Peatland	LGLFFAVLFDVCLHRLFSVSSGENRVASRYVSMVCGLLVTSSLVMLGCFPVVASGKRQMF
Ga0187858_103858362	3300018057	Peatland	MGLHRLFSVSSAENYVAPSNVSMVCSLLVTSGLVMLGRFPVVASGLRQMF
Ga0187858_104929742	3300018057	Peatland	MGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0187858_107570441	3300018057	Peatland	MPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMFSRFPVMACGMRQMF
Ga0187768_10840831	3300020150	Tropical Peatland	LFFHKALGELELFFAVLFKMGLHCLFSVSPAVNYVAPGQVSMVCSLLVTSSLVMFGRFPVMACGMCKMF
Ga0210399_113535071	3300020581	Soil	MSLHRLFRVASAVNYVASCHVSMVCSLLVTPSLMMFGRFPMVASGMRQMF
Ga0210395_100901162	3300020582	Soil	VLFEMGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMARGMRQMF
Ga0210395_110442171	3300020582	Soil	MSLHRLFRVSSAVNYVAPSHVSMVCSLLVTSSLVMLCRFSVVASGMREMFGCLLVMFRSF
Ga0210401_105424592	3300020583	Soil	MGFHRLFSVSSAVNYVAPSDVSMVCRLLVTSGLVMLSRFPVVVSGMRQMFCCFLVMLRSF
Ga0210401_107671782	3300020583	Soil	VLFEMGLHRLFSVSPAVNYVASSYVSMVCSLFVTSGLVMLRRFPMMACGMRKML
Ga0210406_101151573	3300021168	Soil	MVFSELFFAVLFEMGLHRLFSVSSAVNYVAPSHVGMVRSLLVTSSLVMLSRFPVMARGVRQMF
Ga0210406_101859952	3300021168	Soil	MSFNRLFSVSPAVNYVAPRYVGMMCSLFVSSGLMMLGRFPVMACSMRQMF
Ga0210405_112580131	3300021171	Soil	MGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMARGMRQMF
Ga0210408_109075651	3300021178	Soil	MGLNRLFSVSPAVNYVAPRYVSMMCSLLVSSGLVMPGRFPVMACGMRQMFGCFLVML
Ga0210396_104029181	3300021180	Soil	MGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQML
Ga0210386_112760272	3300021406	Soil	MGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQMF
Ga0210383_100993774	3300021407	Soil	QIVFSELFFAVLFEMGLDRLFSVSPAVNYVAPRCVSMMCSFLVSSGLMMLGRFPVMACSMRQMF
Ga0210390_104667461	3300021474	Soil	LFFAVLFEMGLHRLFSMSPAVNYVAPSHVRMVCSLLVTSGFVMLSRFPVVASGMRQMF
Ga0210398_112698331	3300021477	Soil	VLFEMGLHRLFSVSPAMNYVAPSYVSMVCSLLVTSGLVMLGRFSVLACGMR
Ga0210410_109550781	3300021479	Soil	VLFEMGLNRLFSVSPAVNYVAPRYVSMMCSLLVSPGLVMLGRFPVMACGMRQMF
Ga0212123_1001080216	3300022557	Iron-Sulfur Acid Spring	EMGLNRLFSVSPAVNYVAPRYMSMMCSLLVSSGLMMLGRFPVMTCSMRQMF
Ga0212123_101025641	3300022557	Iron-Sulfur Acid Spring	VGRLREAAYFFELELFFAMLFKMSLHRLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFPVVASGVRQMF
Ga0212123_104270161	3300022557	Iron-Sulfur Acid Spring	MGLNRLFSVSPAVNYVAPRYMSMMCSLLVSSGLMMLGRFP
Ga0212123_104670751	3300022557	Iron-Sulfur Acid Spring	VIFEMGLNRLFSVSPAVNYVAPRYMSMMCSLLVSSGLMMLGRFP
Ga0212123_106464671	3300022557	Iron-Sulfur Acid Spring	MSLNRLFSVSPAVNYVAPRYVSMVCSLLVSSGLMMLGRFPVMACSVRQMF
Ga0212123_108799211	3300022557	Iron-Sulfur Acid Spring	MSLNRLFSVSPAVNYMAPRYVSMVCSLLVSSGLMMLGRFPVMACSMRQMF
Ga0224555_11847701	3300023088	Soil	LTTNAPLLPRPPREGGLVWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0207416_10770614	3300025134	Iron-Sulfur Acid Spring	MSLNRLFSVSPAVNYVAPRYVSMVCSLLVSSGLMMLGRFPVMACCMRQMF
Ga0209171_103287842	3300025320	Iron-Sulfur Acid Spring	MGFHRLFSVPSAENYMAPSYVGMVCSLLVTSGLVMFGRLPVVASGMRQMF
Ga0208036_10579161	3300025419	Peatland	LAVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF
Ga0208819_11320421	3300025498	Peatland	MLFEMSLHRLFRMSSTVNYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF
Ga0208563_10592341	3300025501	Peatland	ELFLAVFFEMSLYRLFRVSSAENYVAPSYVSMVCRLLVTPGLVMFGRFPVVASGMGQMF
Ga0208188_10632232	3300025507	Peatland	MPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFP
Ga0207645_106850932	3300025907	Miscanthus Rhizosphere	MSLNRVFSVSPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF
Ga0207654_104134331	3300025911	Corn Rhizosphere	MSLNRVFSVCPAVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF
Ga0207641_103815661	3300026088	Switchgrass Rhizosphere	AVNYVAPRYVSMMCSLLVSSRLMMFGRLPVMACSMRQMF
Ga0207946_1076181	3300027108	Forest Soil	MSLNRLFSVSPAVNYVAPRYVSMMCSLLVSSGLMMLGRFPVMACSMRQMF
Ga0207948_10217401	3300027174	Forest Soil	MSLHRLFRVSSAVNYVAPSHVSMVCSLLVTSSLVMLSRFPVMARGVRQMF
Ga0209117_10630562	3300027645	Forest Soil	VGRLREAAYFFELELFFAMLFKMSLHCLFRVSSAVNYVAPSYVSMVCSLLVTSGLVMFGRFPVVASGMRQMF
Ga0208565_10430583	3300027662	Peatlands Soil	MGLHRLFSVSPAVNYVAPSYVGMVCSLLVTSGLVVLGRFPVMARGMREML
Ga0209009_10151751	3300027667	Forest Soil	MGFHRLFSVSSSVNYVAPSDVSMVCRLLVTSGLMMLSRFPVV
Ga0209448_103024851	3300027783	Bog Forest Soil	MGLNRLFGVSPAVNYVAPRYMSMMCGLLVSSGLMMLGRFPVMACSMRQMF
Ga0209517_103116182	3300027854	Peatlands Soil	MPRLKGLWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACG
Ga0209517_105753921	3300027854	Peatlands Soil	LDLFFPVLFEMGLHSLFRVSPAVNYVAPSYVSMVCSLLVTSGLVMFGRFAVVVGGMCQMF
Ga0209693_106271731	3300027855	Soil	MGLHRLFSVSSAVNYVAPSHVGMVCSLLVTSSLVMLSRFPVMASGMRQMF
Ga0209275_107945241	3300027884	Soil	MGLNRLFSVSPAVNHVAPRYVSMMCSLLVSPGLVMLGRFPVMARGMRQMF
Ga0209067_104181882	3300027898	Watersheds	MGLNRFFSVSPCVNYVAPSYVSMVCSLLVTSALVMLSRFSVVA
Ga0308309_109371212	3300028906	Soil	QMGFHRLFSMYSAVNYVAPGDVSMVCGLLVTSGLVMLCRFPVVVSGMSQMF
Ga0247275_11740061	3300029817	Soil	GLVWGKELFFAVLFEMGLHRLFSVSSCVNYVAPSYVSVVCSLLVTSGLVMLSRFPVMACGMRQMF
Ga0310037_101961191	3300030494	Peatlands Soil	LFFAVLFEMGLHRLFSVSPAVNYVAPSYVGMVCSLLVTSGLVVLGRFPVMARGMREML
Ga0265750_10467351	3300030813	Soil	MGFHRLFSVASAVNYVAPSDVSMVCRLLVTSGLVMLSRFPVVVGGMRQMFCCFLVILRSF
Ga0265770_11302491	3300030878	Soil	MGFHRLFSVSSAVNYVAPSDVGMVRRLFVTSGLVMLCGFPMVVGGMRQMF
Ga0265760_100122124	3300031090	Soil	MGFHRLFSVASAVNYVAPSDVGMVRRLFVTSGLVMLCGFPMVVGGMRQMF
Ga0310686_1080462811	3300031708	Soil	MLFEMGLYRLFSVSSAVNYVAPSYVSVVCSLLVTSGLVMLSRFPVVASSMRQMF
Ga0310686_1081140022	3300031708	Soil	MVLIMPSPSNFKAIVSLELFFTVVFEMGLHRLFSVSPAVNYVAPSYVSMVCGLLVTSCLVMLGRFPLMVCGMRQMH
Ga0310686_1174868061	3300031708	Soil	MSLHRLFSVSSAVNYVAPSHVGMVCSLLVTSSLVMLSRFPVMARGVRQMF
Ga0311301_100792296	3300032160	Peatlands Soil	VLFEMGLNRFFSVSSCVNYVAPSYVSMVCSLLVTSALVMLSRFSMVASSMRHVFRCFLVMLCGFL
Ga0311301_109952683	3300032160	Peatlands Soil	MGLHRLFSVSPAVNYVAPRHVRMVCSLLVTSGLVMLSRFPVVASGMRQMF
Ga0348332_134064041	3300032515	Plant Litter	MGFHRLFSVSSAVNYVAPCDVSMVCRLFVTSGLVMLSRFPVVVGGMRQMF
Ga0348332_139410031	3300032515	Plant Litter	MSLHCLFRVSSAVNCVAPSCVSMVCSLLVTSGLVMFGRFPVMASGVRQMF
Ga0348332_145158401	3300032515	Plant Litter	MVLIMPSPSNFKAIVSLELFFTVVFEMGLHRLFSVSPAVNYVAPSYVSMVCGLLVTSCLVMLGRFLVMAC
Ga0326727_108093061	3300033405	Peat Soil	VNDVAPGDVSMVCGLLVTSSVVMLCRFSVVASGMREMFGCLLVMFGSFP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055945

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences