Metagenome / Metatranscriptome Family F056002

Basic Information
Family ID	F056002
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	40 residues
Representative Sequence	TPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLG
Number of Associated Samples	87
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Most Common Taxonomy
Group	Bacteria (82.609 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.261 % of family members)
Environment Ontology (ENVO)	Unclassified (55.797 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.623 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13586	DDE_Tnp_1_2	2.90
PF13467	RHH_4	2.90
PF04392	ABC_sub_bind	2.17
PF00042	Globin	2.17
PF00589	Phage_integrase	2.17
PF13340	DUF4096	2.17
PF01527	HTH_Tnp_1	2.17
PF00873	ACR_tran	1.45
PF01522	Polysacc_deac_1	1.45
PF03069	FmdA_AmdA	1.45
PF04011	LemA	0.72
PF05239	PRC	0.72
PF13489	Methyltransf_23	0.72
PF00816	Histone_HNS	0.72
PF13439	Glyco_transf_4	0.72
PF01636	APH	0.72
PF02397	Bac_transf	0.72
PF00596	Aldolase_II	0.72
PF07978	NIPSNAP	0.72
PF02371	Transposase_20	0.72
PF12686	DUF3800	0.72
PF12728	HTH_17	0.72
PF03992	ABM	0.72
PF17201	Cache_3-Cache_2	0.72
PF07929	PRiA4_ORF3	0.72
PF13517	FG-GAP_3	0.72
PF03169	OPT	0.72
PF04964	Flp_Fap	0.72
PF02776	TPP_enzyme_N	0.72
PF13358	DDE_3	0.72
PF02518	HATPase_c	0.72
PF04519	Bactofilin	0.72
PF01548	DEDD_Tnp_IS110	0.72
PF01977	UbiD	0.72
PF07690	MFS_1	0.72
PF13676	TIR_2	0.72
PF01068	DNA_ligase_A_M	0.72
PF00083	Sugar_tr	0.72
PF03080	Neprosin	0.72
PF13193	AMP-binding_C	0.72
PF00476	DNA_pol_A	0.72
PF00126	HTH_1	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG1017	Hemoglobin-like flavoprotein	Energy production and conversion [C]	2.17
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.17
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.45
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	1.45
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.45
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.72
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.72
COG1297	Predicted oligopeptide transporter, OPT family	General function prediction only [R]	0.72
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.72
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.72
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	0.72
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.72
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.72
COG2916	DNA-binding protein H-NS	Transcription [K]	0.72
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.06 %
Unclassified	root	N/A	15.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.61 %
Unclassified	root	N/A	15.94 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.91 %
Unclassified	root	N/A	15.94 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	1.45 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.67 %
Unclassified	root	N/A	15.94 %
Candidatus Altiarchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota	1.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.45 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.75 %
Unclassified	root	N/A	15.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.70 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.45 %
unclassified Candidatus Altiarchaeota	no rank	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota	1.45 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	34.06 %
Unclassified	root	N/A	15.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.70 %
Candidatus Altiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	1.45 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.72 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.72 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.72 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.72 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	31.16 %
Unclassified	root	N/A	15.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.70 %
Candidatus Altiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	1.45 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.72 %
Luteibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter	0.72 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.72 %
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	21.74 %
Unclassified	root	N/A	15.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.70 %
Candidatus Altiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	1.45 %
unclassified Lysobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter	0.72 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.72 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.72 %
Bradyrhizobium liaoningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense	0.72 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.72 %
Luteibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium sp. LMTR 3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	18.84 %
Unclassified	root	N/A	15.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.70 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.90 %
Candidatus Altiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	1.45 %
Lysobacter sp. Root604	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. Root604	0.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.72 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	0.72 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.72 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.72 %
Bradyrhizobium liaoningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense	0.72 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.72 %
Luteibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter	0.72 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_14397818	Not Available	540	Open in IMG/M
3300001593\|JGI12635J15846_10188992	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300005332\|Ga0066388_101138136	All Organisms → cellular organisms → Bacteria → Proteobacteria	1326	Open in IMG/M
3300005332\|Ga0066388_103613513	Not Available	789	Open in IMG/M
3300005332\|Ga0066388_104047641	Not Available	747	Open in IMG/M
3300005332\|Ga0066388_105406346	Not Available	647	Open in IMG/M
3300005439\|Ga0070711_100201116	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300005518\|Ga0070699_100756921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	888	Open in IMG/M
3300005713\|Ga0066905_100418409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1092	Open in IMG/M
3300005713\|Ga0066905_101032737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	726	Open in IMG/M
3300005713\|Ga0066905_101432710	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005713\|Ga0066905_101788463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	566	Open in IMG/M
3300005713\|Ga0066905_102017936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	535	Open in IMG/M
3300005764\|Ga0066903_101649520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1218	Open in IMG/M
3300005764\|Ga0066903_102072489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1094	Open in IMG/M
3300005764\|Ga0066903_103783493	Not Available	813	Open in IMG/M
3300005764\|Ga0066903_105038266	Not Available	700	Open in IMG/M
3300005764\|Ga0066903_106612845	Not Available	603	Open in IMG/M
3300005764\|Ga0066903_108720705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	515	Open in IMG/M
3300006046\|Ga0066652_100209040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1683	Open in IMG/M
3300006173\|Ga0070716_100209119	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300006175\|Ga0070712_100773679	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300006844\|Ga0075428_100459468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1363	Open in IMG/M
3300006846\|Ga0075430_101558936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	542	Open in IMG/M
3300006853\|Ga0075420_100603435	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300006871\|Ga0075434_100472899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1275	Open in IMG/M
3300006880\|Ga0075429_100754394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	852	Open in IMG/M
3300007258\|Ga0099793_10194989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	970	Open in IMG/M
3300010043\|Ga0126380_10884883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	740	Open in IMG/M
3300010046\|Ga0126384_10377876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300010047\|Ga0126382_10163158	All Organisms → cellular organisms → Bacteria → Proteobacteria	1542	Open in IMG/M
3300010047\|Ga0126382_10771098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	816	Open in IMG/M
3300010047\|Ga0126382_12231190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	527	Open in IMG/M
3300010048\|Ga0126373_11505362	Not Available	738	Open in IMG/M
3300010361\|Ga0126378_13228169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	518	Open in IMG/M
3300010366\|Ga0126379_10086150	All Organisms → cellular organisms → Bacteria → Proteobacteria	2742	Open in IMG/M
3300010366\|Ga0126379_10749303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1073	Open in IMG/M
3300010366\|Ga0126379_11612846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300010397\|Ga0134124_10503849	Not Available	1171	Open in IMG/M
3300010398\|Ga0126383_10177160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2021	Open in IMG/M
3300010398\|Ga0126383_13265584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	530	Open in IMG/M
3300012202\|Ga0137363_11294655	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300012204\|Ga0137374_10259760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1450	Open in IMG/M
3300012360\|Ga0137375_10059888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	4091	Open in IMG/M
3300012360\|Ga0137375_10133337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2458	Open in IMG/M
3300012361\|Ga0137360_10656210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900	Open in IMG/M
3300012948\|Ga0126375_10026216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2812	Open in IMG/M
3300012971\|Ga0126369_12294428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	626	Open in IMG/M
3300014501\|Ga0182024_10430462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. Root604	1698	Open in IMG/M
3300014501\|Ga0182024_10600773	All Organisms → cellular organisms → Bacteria → Proteobacteria	1378	Open in IMG/M
3300016270\|Ga0182036_11025691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	681	Open in IMG/M
3300016319\|Ga0182033_10056312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2694	Open in IMG/M
3300016319\|Ga0182033_10172333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1694	Open in IMG/M
3300016319\|Ga0182033_10935235	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	769	Open in IMG/M
3300016341\|Ga0182035_11912676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300016357\|Ga0182032_11355811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300016357\|Ga0182032_12043492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter	503	Open in IMG/M
3300016371\|Ga0182034_11107063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	687	Open in IMG/M
3300016371\|Ga0182034_11340075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	625	Open in IMG/M
3300016387\|Ga0182040_11647877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	547	Open in IMG/M
3300016387\|Ga0182040_11795596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	525	Open in IMG/M
3300016404\|Ga0182037_10043212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2959	Open in IMG/M
3300016404\|Ga0182037_11209827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	664	Open in IMG/M
3300016404\|Ga0182037_11447909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300016422\|Ga0182039_10385774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1185	Open in IMG/M
3300018056\|Ga0184623_10153859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense	1063	Open in IMG/M
3300018078\|Ga0184612_10544868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300018083\|Ga0184628_10164233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1157	Open in IMG/M
3300025898\|Ga0207692_10118988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1476	Open in IMG/M
3300026997\|Ga0207784_1009660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300027041\|Ga0209876_1014934	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300027909\|Ga0209382_11025339	All Organisms → cellular organisms → Bacteria → Proteobacteria	858	Open in IMG/M
3300031090\|Ga0265760_10368635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	516	Open in IMG/M
3300031543\|Ga0318516_10120237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300031543\|Ga0318516_10153172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1325	Open in IMG/M
3300031543\|Ga0318516_10732049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300031544\|Ga0318534_10002911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7533	Open in IMG/M
3300031545\|Ga0318541_10296037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300031546\|Ga0318538_10240921	Not Available	970	Open in IMG/M
3300031546\|Ga0318538_10437666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	708	Open in IMG/M
3300031546\|Ga0318538_10781087	Not Available	518	Open in IMG/M
3300031573\|Ga0310915_10336765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300031668\|Ga0318542_10358109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	751	Open in IMG/M
3300031680\|Ga0318574_10805083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300031681\|Ga0318572_10039287	All Organisms → cellular organisms → Bacteria → Proteobacteria	2504	Open in IMG/M
3300031682\|Ga0318560_10011927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3768	Open in IMG/M
3300031719\|Ga0306917_10327386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1187	Open in IMG/M
3300031724\|Ga0318500_10183581	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300031744\|Ga0306918_10127126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1855	Open in IMG/M
3300031744\|Ga0306918_10171418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1618	Open in IMG/M
3300031744\|Ga0306918_10264355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1316	Open in IMG/M
3300031747\|Ga0318502_10365548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	855	Open in IMG/M
3300031768\|Ga0318509_10167202	Not Available	1217	Open in IMG/M
3300031770\|Ga0318521_10786617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	579	Open in IMG/M
3300031797\|Ga0318550_10617533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300031805\|Ga0318497_10621766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	606	Open in IMG/M
3300031805\|Ga0318497_10744527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300031833\|Ga0310917_10699901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300031835\|Ga0318517_10529211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300031860\|Ga0318495_10137934	Not Available	1099	Open in IMG/M
3300031880\|Ga0318544_10078986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1222	Open in IMG/M
3300031890\|Ga0306925_10082880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3393	Open in IMG/M
3300031890\|Ga0306925_10121787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	2791	Open in IMG/M
3300031890\|Ga0306925_10139965	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300031890\|Ga0306925_11075941	Not Available	814	Open in IMG/M
3300031890\|Ga0306925_11373987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031890\|Ga0306925_11689668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	611	Open in IMG/M
3300031893\|Ga0318536_10209212	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300031893\|Ga0318536_10295201	Not Available	822	Open in IMG/M
3300031897\|Ga0318520_10523189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	733	Open in IMG/M
3300031910\|Ga0306923_11042510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	885	Open in IMG/M
3300031910\|Ga0306923_11771782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	635	Open in IMG/M
3300031910\|Ga0306923_12388705	Not Available	524	Open in IMG/M
3300031912\|Ga0306921_10202367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2327	Open in IMG/M
3300031912\|Ga0306921_10948834	Not Available	973	Open in IMG/M
3300031941\|Ga0310912_11189205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	580	Open in IMG/M
3300031942\|Ga0310916_10542940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	989	Open in IMG/M
3300031946\|Ga0310910_10454833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300031947\|Ga0310909_10056646	Not Available	3031	Open in IMG/M
3300031947\|Ga0310909_10076323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2646	Open in IMG/M
3300031947\|Ga0310909_10260089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1451	Open in IMG/M
3300031947\|Ga0310909_10284797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1383	Open in IMG/M
3300031954\|Ga0306926_10126741	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → unclassified Candidatus Altiarchaeota → Candidatus Altiarchaeota archaeon	3152	Open in IMG/M
3300031954\|Ga0306926_10219802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	2357	Open in IMG/M
3300031954\|Ga0306926_11091377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	944	Open in IMG/M
3300031954\|Ga0306926_11838853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300032001\|Ga0306922_10100906	Not Available	3052	Open in IMG/M
3300032001\|Ga0306922_10808845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	979	Open in IMG/M
3300032051\|Ga0318532_10317828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	552	Open in IMG/M
3300032059\|Ga0318533_10665240	Not Available	764	Open in IMG/M
3300032061\|Ga0315540_10065063	Not Available	1719	Open in IMG/M
3300032061\|Ga0315540_10456762	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300032075\|Ga0310890_10103526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1790	Open in IMG/M
3300032076\|Ga0306924_10017398	All Organisms → cellular organisms → Bacteria	7551	Open in IMG/M
3300032076\|Ga0306924_10060145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4216	Open in IMG/M
3300032091\|Ga0318577_10012076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3427	Open in IMG/M
3300032094\|Ga0318540_10209842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	939	Open in IMG/M
3300033289\|Ga0310914_10063577	Not Available	3083	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.65%
Host-Associated	Host-Associated	4.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.03%
Plants	Host-Associated → Plants	4.35%
Aquatic	Environmental → Aquatic	3.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.35%
Sediment	Environmental → Aquatic → Sediment	2.17%
Marine	Environmental → Aquatic → Marine	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.19%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.17%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.45%
Sand	Environmental → Terrestrial → Soil → Sand	0.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	55.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.17%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.17%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.72%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027041	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056002

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_143978181	3300000550	Soil	LSQLCPPYDTPSSNCSLHYRHSDARIVENGSATSGGVSKSAKGVLV*
JGI12635J15846_101889922	3300001593	Forest Soil	PPYATPSSNSSLDYRRSGARIVENGFATSGGVSKSAKVVLGRGLINAQP*
Ga0066388_1011381363	3300005332	Tropical Forest Soil	PYATPSSNSSLDYRRSVARIVENGFATSGGLSKSAKVVLVMA*
Ga0066388_1036135131	3300005332	Tropical Forest Soil	YVTPSSSSSLEYHRSDARIVENGFAAGSGMINSAKVGLGRALINPRFSALAG*
Ga0066388_1040476412	3300005332	Tropical Forest Soil	PYVTPSSSSSLEYHRSDARIVENGFAAGSGMINSAKVGLI*
Ga0066388_1054063461	3300005332	Tropical Forest Soil	PYAEPSSNSSLGYHRNDAHTAENGFAASSGMSESAKVVLD*
Ga0070711_1002011161	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PPYATPSSNSSLDYRRSDARIVENGFATSGGVSKSAKVVLR*
Ga0070699_1007569212	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PCATPFSNSSLDYRRSDARIVKNGFAANSSVSKSAKVVLD*
Ga0066905_1004184093	3300005713	Tropical Forest Soil	TPFSNFSLDYRRSDARIVENGFAASSGMSKSAKVVLS*
Ga0066905_1010327373	3300005713	Tropical Forest Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSRSAKVVLDHPPRAPV*
Ga0066905_1014327101	3300005713	Tropical Forest Soil	SSSSSLEYHRSDARIVENGFAAGSGMSNSAKVGLGGISAT*
Ga0066905_1017884632	3300005713	Tropical Forest Soil	ATPSSNSSLDYRRSVARIVENGFATSGGLSKSAKVVLEHPDE*
Ga0066905_1020179362	3300005713	Tropical Forest Soil	NSSLDYRRSDARIVENGFATSGGLSKSAKVVLGLVGPKKSR*
Ga0066903_1016495201	3300005764	Tropical Forest Soil	YATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA*
Ga0066903_1020724891	3300005764	Tropical Forest Soil	CATPSSNSSLGYRRSDARIVENGFATSSGMNKSAKVVLV*
Ga0066903_1037834932	3300005764	Tropical Forest Soil	ATPFSNSSLDYHHSDAHIVENGFATGGGVSKSAKVVLI*
Ga0066903_1050382661	3300005764	Tropical Forest Soil	PYATPFSNSSLDYHHSDAHIVENGFATGGGVSKSAKVVLTLLDK*
Ga0066903_1066128453	3300005764	Tropical Forest Soil	PYVTPSSSSSLEYHRSDARIVENGFAAGSGMSNSAKVGLVHREVQ*
Ga0066903_1087207052	3300005764	Tropical Forest Soil	PCATRSSNSSLDYRHSDARIVESGFATKSGVSKSAKVVLGYVR*
Ga0066652_1002090401	3300006046	Soil	SLDCRRNVARTAEGGFATHSGVSKSAKVVLTNTP*
Ga0070716_1002091191	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	NSSLDYRRSDARIVENGFATSGGVSKSAKVVLGL*
Ga0070712_1007736793	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PYATPSSNSSLDYRRSDARIVENGFATSGGVSKSAKVVLV*
Ga0075428_1004594682	3300006844	Populus Rhizosphere	PYDTPSSNCSLHYRHSDARIVENGFATSGGVSKSAKVVLD*
Ga0075430_1015589363	3300006846	Populus Rhizosphere	TPSSNSSLDYRRSDARIAENGFATSNGVSKSAKVVLT*
Ga0075420_1006034351	3300006853	Populus Rhizosphere	SNSSLDYRRGDARIAENGFATSSGMNKSAKVVLIWIVSRWP*
Ga0075434_1004728991	3300006871	Populus Rhizosphere	PYATPSSNSSLDYRRSDARIVENGFAASGAVSKSAKVVLGIINLLVSF*
Ga0075429_1007543941	3300006880	Populus Rhizosphere	TPSSNSSLDYRRSDARIAENGFATSNGVSKSAKVVLAN*
Ga0099793_101949892	3300007258	Vadose Zone Soil	VRHAINSSLDYRRGDARIAENGFATSGGVNKSAKVVLV*
Ga0126380_108848831	3300010043	Tropical Forest Soil	SSSSSLEYHRSDARIVENGFAAGSGMSNSAKVGLGRVLIK*
Ga0126384_103778763	3300010046	Tropical Forest Soil	CPPCATPFSNFSLDYRRSDARIVENGFAASSGMSKSAKVVLS*
Ga0126382_101631582	3300010047	Tropical Forest Soil	PPYVTPSSSSSLEYHRSDARIVENGFAAGSGMSNSAKVGLV*
Ga0126382_107710983	3300010047	Tropical Forest Soil	ATPSSNSSLDYRRSVARIVENGFATSGGLSKSAKVVLGLHAD*
Ga0126382_122311901	3300010047	Tropical Forest Soil	SSLDYRRSDARIVENGFATSGGLSKSAKVVLDKDCVSKYTL*
Ga0126373_115053624	3300010048	Tropical Forest Soil	PYATPFSNSSLDYHHSDAHIVENGFATGGGVSKSAKVVLI*
Ga0126378_132281691	3300010361	Tropical Forest Soil	SSNSSLDYRRSDARIVENGFATSSGPSESAKVVLVRRI*
Ga0126379_100861503	3300010366	Tropical Forest Soil	ATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLD*
Ga0126379_107493031	3300010366	Tropical Forest Soil	QPCATPSSNSSLGYRRSDARIVENGFATSSGMNKSAKVVLV*
Ga0126379_116128463	3300010366	Tropical Forest Soil	PSSNSSLDYRRSDARIVENGFATTGGVSKSDKVVLA*
Ga0134124_105038494	3300010397	Terrestrial Soil	PSSNSSLDYRHSDARIVENGFAASSRVSKSAKVVLGSVFS*
Ga0126383_101771601	3300010398	Tropical Forest Soil	SSNSSLDYRLSDARIVENGFATSGGLSKSAKVVLVYS*
Ga0126383_132655841	3300010398	Tropical Forest Soil	PPYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLD*
Ga0137363_112946551	3300012202	Vadose Zone Soil	SNSSLDYRRSDARIVKNGFAANSSVSKSAKVVLGSILIEE*
Ga0137374_102597601	3300012204	Vadose Zone Soil	SNSSLDYRRSDARIVENGFAASSGVSKSAKVVLGSD*
Ga0137375_100598881	3300012360	Vadose Zone Soil	SNSSLDYRRSDARIAENGFAAGSGVSKSAKVVLAS*
Ga0137375_101333376	3300012360	Vadose Zone Soil	SSLDYRRSDARIVENGFAASSGVSKSAKVVLGSD*
Ga0137360_106562103	3300012361	Vadose Zone Soil	ATPSSNSSLDYRRSDARIAENGFAAGSGVSKSAKVVLVRGN*
Ga0126375_100262161	3300012948	Tropical Forest Soil	LCPPYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLD*
Ga0126369_122944282	3300012971	Tropical Forest Soil	SNSSLDYRRSDARIVENGFATAGGVSKSAKVVLVSLSTSK*
Ga0182024_104304623	3300014501	Permafrost	ATPSSNSSLDYRRSDARIAENGFATSGEVSKSAKVVLDPFRRRK*
Ga0182024_106007731	3300014501	Permafrost	SNSSLDYRRSDARIAENGFATSGEVSKSAKVVLDRRRRPFS*
Ga0182036_110256912	3300016270	Soil	PSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVPG
Ga0182033_100563121	3300016319	Soil	FSNSSLDPRRSDARTAENGFATSGGLSKSAKVVLV
Ga0182033_101723335	3300016319	Soil	PPYATPSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV
Ga0182033_109352351	3300016319	Soil	SSSSSLEHHRSDARIVENGFAASSGVSKSAKVVLI
Ga0182035_119126761	3300016341	Soil	TPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0182032_113558112	3300016357	Soil	PYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLMPW
Ga0182032_120434922	3300016357	Soil	SNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLGDVD
Ga0182034_111070633	3300016371	Soil	SSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV
Ga0182034_113400751	3300016371	Soil	YATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLV
Ga0182040_116478772	3300016387	Soil	PPYATPSSNSSLDYRRSDARIVENGFATSDGLSKSAKVVLD
Ga0182040_117955962	3300016387	Soil	CPPCATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVL
Ga0182037_100432125	3300016404	Soil	PPYATPFSNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLV
Ga0182037_112098271	3300016404	Soil	TPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLV
Ga0182037_114479091	3300016404	Soil	SSNFSLDYRRSDARIVENGFAASSGVNKSAKVVLNSGTL
Ga0182039_103857741	3300016422	Soil	PPYATPSSNCSLDYRRSDARIVENGFATSGGLSKSAKVVLGCVLNFH
Ga0184623_101538591	3300018056	Groundwater Sediment	CSLHYRHSDARIVENGFATSGGVSKSAKVVLGSGLN
Ga0184612_105448681	3300018078	Groundwater Sediment	SNCSLHYRHSDARIVENGFATSGGVSKSAKVVLGRVDKIY
Ga0184628_101642332	3300018083	Groundwater Sediment	SSLDYRRSDARIVGNGFAASSGVSKSAKVVLVNMSRLADRA
Ga0207692_101189881	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	TPSSNSSLDYRRSDARIVENGFATSGGVSKSAKVVLR
Ga0207784_10096603	3300026997	Tropical Forest Soil	RSSNSSLDYRHSDARIVENGFATNSGVSKSAKVVLGPVFS
Ga0209876_10149341	3300027041	Groundwater Sand	LSQLCPPYDTPSSNCSLHYRHSDARIVENGFATSGGVSKSAKVVLVT
Ga0209382_110253391	3300027909	Populus Rhizosphere	NSSLDYRRGDARIAENGFATSSGMNKSAKVVLVIP
Ga0265760_103686351	3300031090	Soil	SNSSLDYRRSDARIAENGFATSGEVSKSAKVVLGFRF
Ga0318516_101202372	3300031543	Soil	ATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLVSFINTPLH
Ga0318516_101531723	3300031543	Soil	TPFSNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLV
Ga0318516_107320491	3300031543	Soil	LCPPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318534_100029111	3300031544	Soil	PSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLD
Ga0318541_102960373	3300031545	Soil	FSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318538_102409211	3300031546	Soil	TPSSNSSLDYRRGDAHIAENGFATSSGMNKSAKVVLV
Ga0318538_104376661	3300031546	Soil	CPPCATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLD
Ga0318538_107810872	3300031546	Soil	SSNSSLDYRRGDAHIAENGFATSSGMNKSAKVVLGNAQ
Ga0310915_103367653	3300031573	Soil	SSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLGPVFS
Ga0318542_103581092	3300031668	Soil	CPPYATPFSNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLV
Ga0318574_108050832	3300031680	Soil	PYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318572_100392871	3300031681	Soil	CPPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318560_100119275	3300031682	Soil	PPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0306917_103273861	3300031719	Soil	CATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVL
Ga0318500_101835811	3300031724	Soil	SSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLRPPELRQ
Ga0306918_101271261	3300031744	Soil	CATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLA
Ga0306918_101714181	3300031744	Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV
Ga0306918_102643553	3300031744	Soil	PCPPCATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVL
Ga0318502_103655482	3300031747	Soil	FSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLV
Ga0318509_101672023	3300031768	Soil	TPSSNSSLDYRRGDAHIAENGFATSSGMNKSAKVVLGNAQ
Ga0318521_107866172	3300031770	Soil	SNSSLDYRRSDARIVENGFATSGGLSKSAKVVLASRGAAT
Ga0318550_106175332	3300031797	Soil	ATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318497_106217661	3300031805	Soil	CPPCATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLVSFINTPLH
Ga0318497_107445272	3300031805	Soil	YATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0310917_106999012	3300031833	Soil	ATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLGLGLN
Ga0318517_105292112	3300031835	Soil	PFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLA
Ga0318495_101379343	3300031860	Soil	PSSNSSLDYRRGDAHIAENGFATSSGMNKSAKVVLGNAQ
Ga0318544_100789863	3300031880	Soil	FSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLDRVILRF
Ga0306925_100828801	3300031890	Soil	LCPPYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLD
Ga0306925_101217871	3300031890	Soil	LCPPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLKRPAPPR
Ga0306925_101399654	3300031890	Soil	FSNFSLDYRRSDARIVENGFAASSGMSKSAKVVLD
Ga0306925_110759413	3300031890	Soil	TPSSNSSLDYRRSDARTVENGSATSGGLNKSAKVVLV
Ga0306925_113739871	3300031890	Soil	ATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLRACTHK
Ga0306925_116896681	3300031890	Soil	PPCATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVL
Ga0318536_102092122	3300031893	Soil	RHAISNSSLDYRRSDARIVENGFATSGGLSESAKVVLD
Ga0318536_102952011	3300031893	Soil	ATPFSNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLATAT
Ga0318520_105231892	3300031897	Soil	PFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLRRVLINPL
Ga0306923_110425101	3300031910	Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVPG
Ga0306923_117717821	3300031910	Soil	NSSLDYRRSDARIVEHGFATSGGLSKSAKVVLAGTR
Ga0306923_123887051	3300031910	Soil	SSNSSLDYRRSDARTVENGSATSGGLNKSAKVVLV
Ga0306921_102023671	3300031912	Soil	NSSLDYRRSDARIVENGFATSGGLSKSAKVVLAASIN
Ga0306921_109488341	3300031912	Soil	SSSSLDYRRDDARIAENGFATNGGMSKSAKVVLVSVAKCRN
Ga0310912_111892052	3300031941	Soil	TPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLV
Ga0310916_105429401	3300031942	Soil	ATPSSSSSLDYRRDDARIAENGFATNGGMSKSAKVVLDYV
Ga0310910_104548332	3300031946	Soil	SSSLDYRRDDARIAENGFATNGGMSKSAKVVLVTQCLGEF
Ga0310909_100566461	3300031947	Soil	PSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV
Ga0310909_100763231	3300031947	Soil	SNSSLDYRRSDARIVKHGFATSGGLSKSAKVVLGRVLIN
Ga0310909_102600893	3300031947	Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLV
Ga0310909_102847971	3300031947	Soil	TTPFSNFSLDYRRSDARIVENGFAASSGMSKSAKVVLD
Ga0306926_101267411	3300031954	Soil	PYVTPSSSSSLEHHRSDARIVENGFAASSGVSKSAKVVLI
Ga0306926_102198021	3300031954	Soil	TPSSNSSLDYRRSDARTVENGSATSGGLNKSAKVVLD
Ga0306926_110913771	3300031954	Soil	CPPYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLV
Ga0306926_118388531	3300031954	Soil	CPPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLRACTHK
Ga0306922_101009068	3300032001	Soil	LCPPYATPSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV
Ga0306922_108088451	3300032001	Soil	TPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLG
Ga0318532_103178281	3300032051	Soil	PPYATPFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLARVAPM
Ga0318533_106652401	3300032059	Soil	SSNSSLDYRRGDAHIAENGFATSSGMNKSAKVVLV
Ga0315540_100650631	3300032061	Salt Marsh Sediment	PCATPSSRYSLDYHRSDARTVENGFATNGGLSKSAKVVLG
Ga0315540_104567621	3300032061	Salt Marsh Sediment	PCATPSSRYSLDYHRSDARTVENGFATNGGLSKSAKVVLVQSQLLIR
Ga0310890_101035261	3300032075	Soil	PASNSSLDYRHSDARIVENGFAASSRVSKSAKVVLDVMFPG
Ga0306924_1001739811	3300032076	Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLD
Ga0306924_100601456	3300032076	Soil	PSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLV
Ga0318577_100120766	3300032091	Soil	PYATPSSNSSLDYRRSDARIVENGFATSGGLSKSAKVVLGRELINAQP
Ga0318540_102098421	3300032094	Soil	PFSNSSLDYRRSDARIVEHGFATSGGLSKSAKVVLV
Ga0310914_100635777	3300033289	Soil	YATPSSNSSLDYRRSDARIVENGFATSGGLSESAKVVLV

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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