Metagenome Family F056163

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056163
Family Type	Metagenome
Number of Sequences	138
Average Sequence Length	44 residues
Representative Sequence	MKLPPEIEFHEDIRLLIYRPRGLINEAEINKVISVIEEIEA
Number of Associated Samples	94
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.60 %
% of genes near scaffold ends (potentially truncated)	87.68 %
% of genes from short scaffolds (< 2000 bps)	86.23 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.710 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (30.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.739 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 11.59% Coil/Unstructured: 62.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13561	adh_short_C2	7.97
PF06742	DUF1214	5.07
PF04367	DUF502	5.07
PF00232	Glyco_hydro_1	3.62
PF00884	Sulfatase	2.90
PF10009	DUF2252	2.17
PF14707	Sulfatase_C	2.17
PF00072	Response_reg	2.17
PF02518	HATPase_c	2.17
PF06863	DUF1254	2.17
PF01979	Amidohydro_1	1.45
PF07228	SpoIIE	1.45
PF13557	Phenol_MetA_deg	1.45
PF12710	HAD	1.45
PF16798	DUF5069	1.45
PF00106	adh_short	0.72
PF00196	GerE	0.72
PF13432	TPR_16	0.72
PF03349	Toluene_X	0.72
PF00230	MIP	0.72
PF03372	Exo_endo_phos	0.72
PF02656	DUF202	0.72
PF11964	SpoIIAA-like	0.72
PF06230	LpxI_C	0.72
PF14534	DUF4440	0.72
PF07963	N_methyl	0.72
PF13202	EF-hand_5	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	7.25
COG2928	Uncharacterized membrane protein	Function unknown [S]	5.07
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	5.07
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	3.62
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.72
COG2067	Long-chain fatty acid transport protein	Lipid transport and metabolism [I]	0.72
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.72
COG3494	Uncharacterized conserved protein, DUF1009 family	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.71 %
Unclassified	root	N/A	20.29 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	26.09 %
Unclassified	root	N/A	20.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.70 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	25.36 %
Unclassified	root	N/A	20.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.29 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	16.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.45 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.72 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	16.67 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.72 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples	0.72 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	16.67 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.72 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.72 %
Xenophilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Xenophilus	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	16.67 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.72 %
unclassified Xenophilus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Xenophilus → unclassified Xenophilus	0.72 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	16.67 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	1.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.45 %
Xenophilus sp. L33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Xenophilus → unclassified Xenophilus → Xenophilus sp. L33	0.72 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.72 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02G76KD	Not Available	508	Open in IMG/M
2065487018\|GPINP_F5MS3JC02HHOXB	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
2170459002\|FZY7DQ102I6QWJ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
2170459003\|FZ032L002JXL0J	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
2170459007\|GKWS7RC02GAATA	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
2170459008\|GA8OVOZ02JT88G	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
2170459013\|GO6OHWN01EBV50	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100238451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101855437	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300000550\|F24TB_10147764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2814	Open in IMG/M
3300000787\|JGI11643J11755_11782351	Not Available	794	Open in IMG/M
3300000890\|JGI11643J12802_12393070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300000955\|JGI1027J12803_100192794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300000955\|JGI1027J12803_104065714	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300000955\|JGI1027J12803_109702487	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300000956\|JGI10216J12902_100770192	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300000956\|JGI10216J12902_101890113	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300001431\|F14TB_104112901	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300002899\|JGIcombinedJ43975_10052835	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300004463\|Ga0063356_101738964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	934	Open in IMG/M
3300004463\|Ga0063356_103296353	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300004479\|Ga0062595_101043451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	708	Open in IMG/M
3300005186\|Ga0066676_10338829	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005186\|Ga0066676_10494997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	830	Open in IMG/M
3300005294\|Ga0065705_10398582	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005332\|Ga0066388_101553136	Not Available	1161	Open in IMG/M
3300005332\|Ga0066388_101633884	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300005332\|Ga0066388_103193053	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	837	Open in IMG/M
3300005332\|Ga0066388_103209418	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	835	Open in IMG/M
3300005450\|Ga0066682_10122827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300005764\|Ga0066903_100758184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1725	Open in IMG/M
3300005764\|Ga0066903_103304821	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005764\|Ga0066903_103990206	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300005764\|Ga0066903_104009899	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005764\|Ga0066903_105216191	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005764\|Ga0066903_109144294	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300006881\|Ga0068865_100909447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	766	Open in IMG/M
3300007788\|Ga0099795_10507528	Not Available	563	Open in IMG/M
3300009137\|Ga0066709_101807467	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	857	Open in IMG/M
3300010046\|Ga0126384_11434837	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300010048\|Ga0126373_10484007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1277	Open in IMG/M
3300010048\|Ga0126373_11857466	Not Available	666	Open in IMG/M
3300010358\|Ga0126370_12474820	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010359\|Ga0126376_10076320	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300010359\|Ga0126376_12708286	Not Available	545	Open in IMG/M
3300010360\|Ga0126372_10325592	Not Available	1365	Open in IMG/M
3300010361\|Ga0126378_13213002	Not Available	520	Open in IMG/M
3300010362\|Ga0126377_11800184	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300010362\|Ga0126377_12707879	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300010366\|Ga0126379_10199485	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300010366\|Ga0126379_11070677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	912	Open in IMG/M
3300010366\|Ga0126379_11178283	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300010371\|Ga0134125_12295216	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300010376\|Ga0126381_100904552	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300010376\|Ga0126381_104541836	Not Available	535	Open in IMG/M
3300010398\|Ga0126383_11199643	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300010398\|Ga0126383_11743887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	711	Open in IMG/M
3300010398\|Ga0126383_11780613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	704	Open in IMG/M
3300010399\|Ga0134127_10185854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1920	Open in IMG/M
3300012200\|Ga0137382_10058167	All Organisms → cellular organisms → Bacteria	2438	Open in IMG/M
3300012201\|Ga0137365_11210183	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300012285\|Ga0137370_10340909	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300012351\|Ga0137386_10350335	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300012896\|Ga0157303_10234549	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300012948\|Ga0126375_10302137	Not Available	1112	Open in IMG/M
3300012958\|Ga0164299_11539473	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300012971\|Ga0126369_12124562	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300012972\|Ga0134077_10312140	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300012975\|Ga0134110_10314635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300012984\|Ga0164309_10769758	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300012987\|Ga0164307_11840713	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012989\|Ga0164305_10529452	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300012989\|Ga0164305_10879823	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300014154\|Ga0134075_10270180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	737	Open in IMG/M
3300015359\|Ga0134085_10266227	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300015359\|Ga0134085_10574836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	522	Open in IMG/M
3300015371\|Ga0132258_13799104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	1029	Open in IMG/M
3300015372\|Ga0132256_102153628	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300015373\|Ga0132257_103623129	Not Available	562	Open in IMG/M
3300016270\|Ga0182036_10418829	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300016319\|Ga0182033_11607826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300016319\|Ga0182033_12019203	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300016387\|Ga0182040_10590954	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	898	Open in IMG/M
3300016404\|Ga0182037_11207436	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300016422\|Ga0182039_10226085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1509	Open in IMG/M
3300016422\|Ga0182039_11641335	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300018054\|Ga0184621_10035316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1617	Open in IMG/M
3300018431\|Ga0066655_10770856	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300018431\|Ga0066655_10950319	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	591	Open in IMG/M
3300018433\|Ga0066667_10721875	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300019874\|Ga0193744_1085494	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300019877\|Ga0193722_1101359	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300019882\|Ga0193713_1102333	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300019883\|Ga0193725_1134680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Xenophilus → unclassified Xenophilus → Xenophilus sp. L33	548	Open in IMG/M
3300020006\|Ga0193735_1140622	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300021560\|Ga0126371_10709719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1154	Open in IMG/M
3300024330\|Ga0137417_1357714	All Organisms → cellular organisms → Bacteria	3893	Open in IMG/M
3300025910\|Ga0207684_10517989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1022	Open in IMG/M
3300025930\|Ga0207701_11054255	Not Available	675	Open in IMG/M
3300025930\|Ga0207701_11067632	Not Available	670	Open in IMG/M
3300025936\|Ga0207670_10425716	Not Available	1066	Open in IMG/M
3300026023\|Ga0207677_11146820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	710	Open in IMG/M
3300026078\|Ga0207702_12326992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300026557\|Ga0179587_10773098	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300027903\|Ga0209488_10440442	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300028784\|Ga0307282_10155985	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1082	Open in IMG/M
3300031231\|Ga0170824_106424315	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031446\|Ga0170820_13368760	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031446\|Ga0170820_17875514	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031720\|Ga0307469_11982874	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300031740\|Ga0307468_102063680	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031740\|Ga0307468_102282697	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031912\|Ga0306921_10657671	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300031912\|Ga0306921_11180209	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031912\|Ga0306921_11533112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	727	Open in IMG/M
3300031942\|Ga0310916_10493386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1043	Open in IMG/M
3300031942\|Ga0310916_10518412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1015	Open in IMG/M
3300031954\|Ga0306926_10049293	All Organisms → cellular organisms → Bacteria	5032	Open in IMG/M
3300031954\|Ga0306926_10592384	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300032001\|Ga0306922_10039686	All Organisms → cellular organisms → Bacteria	4834	Open in IMG/M
3300032001\|Ga0306922_10915150	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300032076\|Ga0306924_11725050	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300032076\|Ga0306924_12391968	Not Available	533	Open in IMG/M
3300032205\|Ga0307472_101637118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300032261\|Ga0306920_101550743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.20%
Host-Associated	Host-Associated	5.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.48%
Plants	Host-Associated → Plants	5.80%
Aquatic	Environmental → Aquatic	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.07%
Sediment	Environmental → Aquatic → Sediment	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.16%
Loam	Environmental → Terrestrial → Soil → Loam	12.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.07%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_04334830	2065487018	Soil	MELPPDIEFHPDIRLLVYRPRGLIDEAAINKIIGVI
GPINP_02315630	2065487018	Soil	MKLPPEIQFHQDIRLLIYRPSGLIDEAVLNKVISVIEDLEAATQEPFNRFTDAS
E1_00547410	2170459002	Grass Soil	MKIPPDFEFHEDIRLLIYRPHGLLNEVAFNEVISVVEDLEAKLQ
E4A_05291590	2170459003	Grass Soil	LPPDIEFHEDIRLLIYRPKGVINEAEINRVIGVIEGIEAASQHPL
L02_00860190	2170459007	Grass Soil	MKLPPDIEFHEDIRLLIYRPKGVINEAEINRVIGVIEGIEAASQHP
F48_00787610	2170459008	Grass Soil	MKLPPDIEFHEDIRLLIYRPKGVINEAEINRVIGVIEGIEAASQHPFNR
N57_07181660	2170459013	Grass Soil	MELPPEIEFHPDIRLLVYRPRGLIDEATVNKIISVIEDLEAATQE
INPhiseqgaiiFebDRAFT_1002384511	3300000364	Soil	MKLPPEIEFHQDIRLFVYRPRGLIDEAAVNNVISVIEEIEAATQ
INPhiseqgaiiFebDRAFT_1018554372	3300000364	Soil	MKLPSEIEFHEDIRLLVWRPRGLLDEAAINKVLSA
F24TB_101477644	3300000550	Soil	MIGTISPRKENVMKLPSEIQFHEDIRLLVYRPRGLIDEAAINKIISVIEKLEAATQEPFN
JGI11643J11755_117823511	3300000787	Soil	MELPPEIGFHPDIGLLIYRPRGLINEAALNKVINIIEDLE
JGI11643J12802_123930702	3300000890	Soil	MKLPRDVEFHENIRLLIYRPRGLIDEAAINKVISIIEDLEASTQEPFNR
JGI1027J12803_1001927942	3300000955	Soil	MKLPPDVEFHEDIRLFVWRPRGVLNEAAINKVLSTLEEPKILILSV*
JGI1027J12803_1040657141	3300000955	Soil	MKLPREIEFYQDLCLLIYRPRGLIDEAAINKIISVIEDI
JGI1027J12803_1097024875	3300000955	Soil	MKLPPEIQFHEDIRLLIYRPRGLIGETALNNVIDVIEDLEAATQEPFNRF
JGI10216J12902_1007701921	3300000956	Soil	MNNIKLPPEIEFHKDIRLLIYRPKGLINEAEINRVIGVIEGIEAATQE
JGI10216J12902_1018901131	3300000956	Soil	MNNIKLPPDIEFHQDIRLLIYRPKGLIDEAEINRVIGVIEGIEAATQE
F14TB_1041129011	3300001431	Soil	MKLPSEIEFHQDIGLLVYRPRGLIDEAAINKIISVIEDIEAN
JGIcombinedJ43975_100528351	3300002899	Soil	MKLPPDIEFHQGIRLLIYRPKGLINEAEINRVIGVIEGIEAASKQPFNRF
Ga0063356_1017389642	3300004463	Arabidopsis Thaliana Rhizosphere	MTLPPDIEFHEDIRLLVYRPRGLIDEAAINKITTAIEELEAK
Ga0063356_1032963532	3300004463	Arabidopsis Thaliana Rhizosphere	MKLPPDIEFHKDIRLFIYRPKGLINEAEINRVIGVIEGIEAAS
Ga0062595_1010434512	3300004479	Soil	MKLPPDIEFHEDIHLLIYRPKGLINEAEINRVIGVIEGIEAASQQ
Ga0066676_103388291	3300005186	Soil	MKLPPDVEFHEDIHLLIYRPCGLIDEAALNKVINVIEDLEAATQE
Ga0066676_104949971	3300005186	Soil	MKLPPDVQFHKNARLLVYRPRGLLNESAINKVLSALEDLEAE
Ga0065705_103985821	3300005294	Switchgrass Rhizosphere	MNLPPEADFHEDIRLLIWRPRGLVNEAAVNKILTVLEELEGKLH
Ga0066388_1007737453	3300005332	Tropical Forest Soil	MKLPPDVEFYEDIRLFIHRPRGMLNEATINQVVSAIEDLEAKLQE
Ga0066388_1015531361	3300005332	Tropical Forest Soil	MKFPPEIEFHQDIRLLIYRPKRVINEAEINRVIGVIEGIEAASQEPFNRFS
Ga0066388_1016338843	3300005332	Tropical Forest Soil	MNNIKLSPEIEFHQDIRLLIYRPKGLINEAEINRVIGVIEGIEAASKQPFNRFS
Ga0066388_1031930531	3300005332	Tropical Forest Soil	MKLAPEIEFHEDIRLLVWRPRGLLDEAAINKILSALEDLEAKLQ
Ga0066388_1032094182	3300005332	Tropical Forest Soil	MSLPPEIEFHEDVRLLVYRPRGLIDEAAINKITSVIEEIE
Ga0066682_101228273	3300005450	Soil	MKLPPDLEFHEDIRLLVYRPRGLLNEAAFNKVISALEDLEAKLQEPF
Ga0066903_1007581841	3300005764	Tropical Forest Soil	MNNMKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLGALEDLEA
Ga0066903_1020455941	3300005764	Tropical Forest Soil	MKLPPDLEFYEDIRLLFFRPHGLLNEGAFNKVISALEDLE
Ga0066903_1033048213	3300005764	Tropical Forest Soil	MNNIKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLGALEDLEA
Ga0066903_1039902063	3300005764	Tropical Forest Soil	MINLKLPPDVEFYEDIRLLIYRPRDLIDEAVVNRIVSVIEQIE
Ga0066903_1040098993	3300005764	Tropical Forest Soil	MINVKLPPDVEFYEDIRLLIYRPRDLIDEAVVNRIVSVIEQIE
Ga0066903_1052161913	3300005764	Tropical Forest Soil	MKLPPDIEFHEHIRLLIYRPKGLINEAEINRVIGVI
Ga0066903_1072855452	3300005764	Tropical Forest Soil	MKLPPDVEFQEDIRLFIHRPRGLLNEATINQVVAALEDLEAKLQEPFNRFLD
Ga0066903_1091442942	3300005764	Tropical Forest Soil	MKLPADVEFHEDIRLLIYRPRGLLDEAAINEVIGVIENLEAK
Ga0068865_1009094472	3300006881	Miscanthus Rhizosphere	MKLPLPPDLEFHEDIRLLIYRPRGLLNEAAFNKVISALEDLEGKLQEP
Ga0099795_105075282	3300007788	Vadose Zone Soil	MKLPPEIEVHSDIRLLVYRPRGLINEAAINKVVSAIEDLEAATQE
Ga0066709_1018074672	3300009137	Grasslands Soil	MKLPPEIQFHQDIRLLIYRPHGLLNEAAFNTVISALEDLEAKL
Ga0126384_114348373	3300010046	Tropical Forest Soil	MKLPPDIEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLE
Ga0126373_104840073	3300010048	Tropical Forest Soil	MKLPPEIEFHEDIRLLIYRPRGLINEAEINKVISVIEEIEA
Ga0126373_118574662	3300010048	Tropical Forest Soil	MKLPPDVEFYEDVRLLIYRPRGLIDEAAVNKIVAVIEEIEAASP
Ga0134070_101256833	3300010301	Grasslands Soil	MKLPPDVQFHKNARLLVYRPRGLLNESAINKVLSALEGLEAELQEPFNRF
Ga0126370_124748201	3300010358	Tropical Forest Soil	MKLPPDIEFHEDIRLLIYRPRGLLDEAAINKVLSALEDLEAK
Ga0126376_100763204	3300010359	Tropical Forest Soil	MINLKLPPDVEFHEDIRLLIYRPKGVINEAVVNNIVSVIEEIEAATQEPFNRF
Ga0126376_127082862	3300010359	Tropical Forest Soil	MKLSPEIEFHQDIRLLIYRPKELINEAEINRVIGIIEGIEAASDEPFSRFS
Ga0126372_103255922	3300010360	Tropical Forest Soil	MEIIEMNKMKLLPELEFYEDIRLLIYRPRGLVNEAALNKTLSALEDLEANLQE
Ga0126378_132130021	3300010361	Tropical Forest Soil	MKLPPDIEFHQDIRLLIYRPKGVINEAEINRVIAVIEGIEAA*
Ga0126377_118001842	3300010362	Tropical Forest Soil	MEIIQMNKMKLPPEIEFQEDIRLLIYRPQGLLNEAALNKALSALEDLEANL
Ga0126377_127078792	3300010362	Tropical Forest Soil	MINVKLPPDVEFYEDIRLLIYRPRDLIDEAVVNRIVSVIEQIEAATQAPFN
Ga0126379_101994853	3300010366	Tropical Forest Soil	MKLPPDIEFHQDIRLLIYRPKGMINEAEINRVSGIIE
Ga0126379_110706771	3300010366	Tropical Forest Soil	MKLPPDIEFHEDIRLLIYRPKGLINAAEINRVIGVIEGIEAGSQEPFNRFS
Ga0126379_111782833	3300010366	Tropical Forest Soil	MEIIEMDNTKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLGALEDLEAKLQ
Ga0134125_122952162	3300010371	Terrestrial Soil	MKLPPELEFHQDIRLLVYRPHGLIDEAAINKVVTAIEDLET
Ga0134128_130568501	3300010373	Terrestrial Soil	MMLPRDVQFYEDVRLFVWIPRGVLDEAALNKVLGALEDLEAKLQAPFNRFTDTL
Ga0126381_1009045523	3300010376	Tropical Forest Soil	MINVKLPAEVEFHEDVRLLIYRPKGVINEAVVNKIVSVIEEIEAATQEPF
Ga0126381_1024269501	3300010376	Tropical Forest Soil	MNNMKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLGALEDLEAKLQAPFNRFTD
Ga0126381_1039907193	3300010376	Tropical Forest Soil	MKLRPEIEFHEDIRLFIYRPRGLIDEAAMNEVIGVIEDLEAKLQEPFNRFADTVAADE
Ga0126381_1045418361	3300010376	Tropical Forest Soil	MKPPPEVEFHEDIHLLIYRPRGLIDEAAISNIIAVIERLEIEK
Ga0126381_1048681301	3300010376	Tropical Forest Soil	MEIIQMNKMKLPPEIEFQEDIRLLIYRPQGLLNEAALNKALGALEDLEEKLQEPFNR
Ga0126383_111996431	3300010398	Tropical Forest Soil	MNNMKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLGALEDLEAKLQEP
Ga0126383_117438871	3300010398	Tropical Forest Soil	MKLPPEIEFHEDIRLLIFRPRGVVDEVALNRTLSALEDLETK
Ga0126383_117806132	3300010398	Tropical Forest Soil	MKLLPEIEFHEDIRLFIYKPRGLIDEAAMNKVIGVIEDLEAKLEEPFNRF
Ga0134127_101858543	3300010399	Terrestrial Soil	MKLSPDIEFHQDIRLLIYRPKGVINEAEINRVIGVIEG
Ga0137382_100581673	3300012200	Vadose Zone Soil	MKPPPEIEFHQDIRLLVYRPHGLIDEAAINEVVSVIEGLE
Ga0137365_112101831	3300012201	Vadose Zone Soil	MKLPPELEFHQDIRLLIYRPHGLIDEAAINKVVGAIEDLEAATQEPFNR
Ga0137370_103409093	3300012285	Vadose Zone Soil	MKLLPEIEFHEDIRLLVYRPRGLIDETAVKKVISVLE
Ga0137386_103503351	3300012351	Vadose Zone Soil	MNKMKLPPEIQFYEDIRLLIYRPRGLIDEAAINKVTSVIEDLEAE
Ga0157303_102345492	3300012896	Soil	MKLPPDIEFHKDIRLFIYRPKGLINEAEINRVIGVIEGIEAASQQPFNRFS
Ga0126375_103021374	3300012948	Tropical Forest Soil	MKLPPNVEFQEDIRLLIYRPRGLIDEAAVNKIVTVIEEIEAAS
Ga0164299_115394732	3300012958	Soil	MKLSADIEFREDVRLLIYRPKGLINEAEINRVIGVIEGIEAASQQPFNRFSD
Ga0126369_121245622	3300012971	Tropical Forest Soil	MKLPPDIEFHQGIRLLIYRPTGLINEAEINRVIGV
Ga0134077_103121403	3300012972	Grasslands Soil	MKLPPEIQFYKDIRLLIYRPHGLIDEAAINKVTSVIE
Ga0134110_103146353	3300012975	Grasslands Soil	MRLPPEIQFYKDAHLLVYRPHGLLNEASVNKVTSLIEDLE
Ga0164309_107697582	3300012984	Soil	MKLPPDIEFHEDIRLFIYRPKGLINEAEINRVIGIIEGIEAAS
Ga0164307_118407132	3300012987	Soil	MKLPPDIEFHEDIRLLIYKPHGLIDEAAINEVIGVIEDLEAKLQEPF
Ga0164305_105294522	3300012989	Soil	MKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLE
Ga0164305_108798232	3300012989	Soil	MKLPPDIEFHEDFRLLIYRPKGLINEAEINRVIGVIEGIE
Ga0134075_102701802	3300014154	Grasslands Soil	MILLSPNVEFHEDIRLLIYRPRGVLNEAAINKVLSALEDLEAKL
Ga0134085_102662271	3300015359	Grasslands Soil	MKLPPEIQFYKDIRLFIYRPRGLIDEAAINKVTSVIEELEAET
Ga0134085_105748361	3300015359	Grasslands Soil	MKLPPDVQFHKNARLLVYRPRGLLNESAINKVLSALEDLEAELQ
Ga0132258_137991042	3300015371	Arabidopsis Rhizosphere	MKLPPEIEFHPDIGLLIYRPRGLIDEAAINKVVSV
Ga0132256_1021536281	3300015372	Arabidopsis Rhizosphere	MKLPPNIEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPF
Ga0132257_1036231292	3300015373	Arabidopsis Rhizosphere	MNLPPEIQFLEDVRLVIYRPRGVVDEASLNRAIAALSDLEATLK
Ga0182036_104188293	3300016270	Soil	MNLSPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKL
Ga0182033_116078261	3300016319	Soil	VKLSPEIEFHEDIRLLVWRPRGLLDEAAINKILSALEDLEA
Ga0182033_120192031	3300016319	Soil	MKLPPEIQFYEDIRLLVYRPRGLIDEAAVNKIVSVIEEIEAATQEPFNR
Ga0182040_105909542	3300016387	Soil	MKLPPEIEFHEDIRLLIYRPRGLLNEAAINRVLGALEDLEAK
Ga0182037_112074361	3300016404	Soil	MKLPPDIEFHEDIRLLIYRPKGLINEPEINRVIGIIEGIEAASQQPF
Ga0182039_102260851	3300016422	Soil	MKLLQEIEFHEDIRLFIYKPRGLIDEAAMNEVIGVIEDLEAKLQEPFNRF
Ga0182039_116413352	3300016422	Soil	MKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLSALED
Ga0182038_114014172	3300016445	Soil	MKLPPDVEFHEDIHLFIHRPHGLLNEATINQVVSALGDLEAKLQ
Ga0134074_13714202	3300017657	Grasslands Soil	MKLPPDVQFHKNARLLVYRPRGLLNESAINKVLSALEDLEAELQEPFNRF
Ga0184621_100353161	3300018054	Groundwater Sediment	MKLPPEVQFHEDIRLLIYRPKGLINEAEINRVIGVIEGI
Ga0066655_107708562	3300018431	Grasslands Soil	MKLPPEIQFHEDIRLLIYRPRGLIDEVAINKVTSVIEQL
Ga0066655_109503191	3300018431	Grasslands Soil	MTLPSDIEFHEDIRLFIYRPRGLIDEAALKKAISVLEDLEAKSQEP
Ga0066667_107218752	3300018433	Grasslands Soil	MKLPPDIQFHEDIRLLVWRPRGLIDEAAINKVISVIEDLEAATQE
Ga0193744_10854942	3300019874	Soil	MKLPPDVEFHEDIRLFVYRPRGSIDEAAINKITSVIEDLE
Ga0193722_11013593	3300019877	Soil	MTLPPDIQFYHDIRLLIYRPRGLIDQAAINKITSVIEDL
Ga0193713_11023332	3300019882	Soil	MILPPDIEFHQDIRLLIYRPKGLINEAEINRVIGVIEGIEAASQE
Ga0193725_11346802	3300019883	Soil	MKLPPDIEFHQDIRLLIYRPKGLINEAEINRVIGVIEGIEAGTQEPFN
Ga0193735_11406222	3300020006	Soil	MKLASDVEFHEDIRLLIYRPRGLIDEPAIKKVASVLE
Ga0126371_107097192	3300021560	Tropical Forest Soil	MKLAPHLEFHEDVRLLVWRPLGLLDDAALNKVLNALEDLE
Ga0137417_13577141	3300024330	Vadose Zone Soil	MKLPPEVEFHQDIPLLIYRPRGLIGEVALNNVISVIEELEAATQEPLIDSPIAGSR
Ga0207684_105179893	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTLPPDVQFHADIRLLVYRPRGLIDEAAINKVISVIEDL
Ga0207701_110542551	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKLSPDIEFHQDIRLLIYRPKGVINEAEINRVIGVI
Ga0207701_110676321	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKLPPDIEFHQDIRLLIYRPKGVINEAEINRVIGVI
Ga0207670_104257161	3300025936	Switchgrass Rhizosphere	MKGNPMKLPPEIEFHQDIRLLIYRPRGLIDETAINNT
Ga0207677_111468202	3300026023	Miscanthus Rhizosphere	MKLPPEIEFHQDIRLLIYRPRGLIDETAINNTISVIEELEAAI
Ga0207702_123269921	3300026078	Corn Rhizosphere	MKLPPDIEFHEDIRLLIYRPRGLVNEAAINKVLTALEDL
Ga0179587_107730982	3300026557	Vadose Zone Soil	MKLPPDIEFHEDLRVLIYRPKGLINEAEINRVIGVIEGIEAASQQP
Ga0209488_104404423	3300027903	Vadose Zone Soil	MKLLPEIEFHDDIRLLIYRPRGVLNEAAINKVLSAVEDLEAKLQEPF
Ga0307282_101559853	3300028784	Soil	MKLPPDIQFHHDIRLLIYRPRGLIDQAAINKITSVIEDLEAAT
Ga0170834_1037675932	3300031057	Forest Soil	MKLPPDIQFQEDIRLLLWRPRGLLNEPAINKILGALEDLEAKLQEPF
Ga0170824_1064243151	3300031231	Forest Soil	MTPLPDIEFHEDVRLLIYRPRGLIDEAAVNKIISV
Ga0170824_1121516001	3300031231	Forest Soil	MKLPPEIQFHQDIRLFVYRPHGLLNEAAFNKVLGALEDLEAKLQEPFNR
Ga0170820_133687601	3300031446	Forest Soil	MKLPPEIEFHQDIRLLIYRPRGLIDEAAVNKIISVIEEIEAATQ
Ga0170820_178755141	3300031446	Forest Soil	MTPLPDIEFHEDVRLLIYRPRGLIDEAAVNKIISVIEEIEA
Ga0307469_119828741	3300031720	Hardwood Forest Soil	MNLPPDIEFHEDFRLLIYRPKGLINEAEINRVIGVIE
Ga0307468_1020636801	3300031740	Hardwood Forest Soil	MKLLPEIEFHEDIRLLVYRPRGLIDETAVKKVISVLEDLEAK
Ga0307468_1022826971	3300031740	Hardwood Forest Soil	MKLPPEVEFHEDIRLLIYRPKGLINEAEINRVIGVIEGI
Ga0306921_106576711	3300031912	Soil	VKLSPEIEFHEDIRLLVWRPRGLLDEAAINKILSALEDLE
Ga0306921_111802093	3300031912	Soil	MKLPPEIEFHEDIRLLIYRPRGLLNEAAINKVLSA
Ga0306921_115331121	3300031912	Soil	MKLLPGIEFHEDIRLLIYKPHGLINEAAMNEVIGVIEDLEAKLQEPFNRFADTVAADEV
Ga0310916_104933862	3300031942	Soil	MKLPPDIEFHEDIRLLIYRPKGLINEPEINRVIGIIEGIEAASQQPFN
Ga0310916_105184123	3300031942	Soil	MNKMNLPADVQFYEDVRLLVWRPRGLIDDAAINKILSALEDLE
Ga0306926_100492935	3300031954	Soil	VKLPPEIQFHEDIRLLVWRPRGLLDEAAINKILSALED
Ga0306926_105923844	3300031954	Soil	MNLSPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRF
Ga0306922_100396861	3300032001	Soil	VKLPPEIQFHEDIRLLVWRPRGLLDEAAINKILSAL
Ga0306922_109151501	3300032001	Soil	MKLPPEIEFHEDIRLLIYRPRGLIDEAEINRVIGVIEGIEA
Ga0306924_117250501	3300032076	Soil	LYTHLYTQVKLSPEIEFHEDIRLLVWRPRGLLDEAAINKILS
Ga0306924_123919681	3300032076	Soil	MKLPPDLEFHEDIRLLVYRPKAVINEAEINRVIGVI
Ga0307471_1003092623	3300032180	Hardwood Forest Soil	MSSVVGMNKMKLSPDLEFDEDIRLLIYRPRGLLNEAAFNKVISAVENLEAKLQEPF
Ga0307472_1016371181	3300032205	Hardwood Forest Soil	MKLPPDIEFHEDIRLLIYKPHGLIDEAAINEVIGVIEDLEAKLQAPFNRFADT
Ga0306920_1015507432	3300032261	Soil	MKLPPDIEFHEDIRLLIYRPKGLINEPEINRVIGII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F056163

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences