Basic Information | |
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Family ID | F056568 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 137 |
Average Sequence Length | 45 residues |
Representative Sequence | TINAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Number of Associated Samples | 114 |
Number of Associated Scaffolds | 137 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 3.65 % |
% of genes from short scaffolds (< 2000 bps) | 2.19 % |
Associated GOLD sequencing projects | 110 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.38 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (98.540 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (32.847 % of family members) |
Environment Ontology (ENVO) | Unclassified (62.774 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (69.343 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 25.68% β-sheet: 10.81% Coil/Unstructured: 63.51% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
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Pfam ID | Name | % Frequency in 137 Family Scaffolds |
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PF10124 | Mu-like_gpT | 41.61 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 98.54 % |
All Organisms | root | All Organisms | 1.46 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300003431|JGI25913J50563_1009483 | Not Available | 1736 | Open in IMG/M |
3300008267|Ga0114364_1004913 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 6895 | Open in IMG/M |
3300025426|Ga0208739_1014324 | Not Available | 1474 | Open in IMG/M |
3300027708|Ga0209188_1068692 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1507 | Open in IMG/M |
3300027798|Ga0209353_10027078 | Not Available | 2677 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 32.85% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 8.76% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 7.30% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 7.30% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 6.57% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 4.38% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 4.38% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 3.65% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 2.92% |
Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 2.92% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 2.92% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 2.19% |
Freshwater And Sediment | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment | 1.46% |
Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 1.46% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 1.46% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.73% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater | 0.73% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater | 0.73% |
Anoxic Zone Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater | 0.73% |
Lake Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment | 0.73% |
Aquatic | Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic | 0.73% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 0.73% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.73% |
Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 0.73% |
Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 0.73% |
Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 0.73% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.73% |
Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.73% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000101 | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 | Environmental | Open in IMG/M |
3300000203 | Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion | Environmental | Open in IMG/M |
3300002408 | Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) | Environmental | Open in IMG/M |
3300003393 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD | Environmental | Open in IMG/M |
3300003431 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN | Environmental | Open in IMG/M |
3300003797 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 | Environmental | Open in IMG/M |
3300003827 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 | Environmental | Open in IMG/M |
3300004763 | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300004790 | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300004836 | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005419 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005580 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF | Environmental | Open in IMG/M |
3300005582 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF | Environmental | Open in IMG/M |
3300006104 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 | Environmental | Open in IMG/M |
3300006637 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA | Environmental | Open in IMG/M |
3300006928 | Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG | Environmental | Open in IMG/M |
3300007234 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA | Environmental | Open in IMG/M |
3300007541 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG | Environmental | Open in IMG/M |
3300007542 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG | Environmental | Open in IMG/M |
3300008267 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR | Environmental | Open in IMG/M |
3300008450 | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs | Environmental | Open in IMG/M |
3300009081 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 | Environmental | Open in IMG/M |
3300009158 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG | Environmental | Open in IMG/M |
3300009529 | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG | Environmental | Open in IMG/M |
3300010885 | northern Canada Lakes Co-assembly | Environmental | Open in IMG/M |
3300012012 | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m | Environmental | Open in IMG/M |
3300012739 | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES028 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012741 | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES014 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012778 | Freshwater microbial communities from Lake Croche, Canada - C_130208_E_mt (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012785 | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES011 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300012967 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300013130 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2 | Environmental | Open in IMG/M |
3300013295 | northern Canada Lakes metatranscriptome co-assembly | Environmental | Open in IMG/M |
3300013372 | Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs | Environmental | Open in IMG/M |
3300015050 | Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D | Environmental | Open in IMG/M |
3300017700 | Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D | Environmental | Open in IMG/M |
3300017701 | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N | Environmental | Open in IMG/M |
3300017716 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D | Environmental | Open in IMG/M |
3300017722 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N | Environmental | Open in IMG/M |
3300017747 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N | Environmental | Open in IMG/M |
3300017754 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D | Environmental | Open in IMG/M |
3300017761 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N | Environmental | Open in IMG/M |
3300017777 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N | Environmental | Open in IMG/M |
3300017778 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D | Environmental | Open in IMG/M |
3300017780 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N | Environmental | Open in IMG/M |
3300017784 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N | Environmental | Open in IMG/M |
3300017785 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N | Environmental | Open in IMG/M |
3300018080 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG | Environmental | Open in IMG/M |
3300019783 | Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N | Environmental | Open in IMG/M |
3300019784 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D | Environmental | Open in IMG/M |
3300020141 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 | Environmental | Open in IMG/M |
3300020172 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 | Environmental | Open in IMG/M |
3300020179 | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m | Environmental | Open in IMG/M |
3300020498 | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020529 | Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020530 | Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020536 | Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300020556 | Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
3300021137 | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion | Environmental | Open in IMG/M |
3300021140 | Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion | Environmental | Open in IMG/M |
3300021519 | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m | Environmental | Open in IMG/M |
3300021961 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D | Environmental | Open in IMG/M |
3300021962 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D | Environmental | Open in IMG/M |
3300021963 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D | Environmental | Open in IMG/M |
3300022053 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2) | Environmental | Open in IMG/M |
3300022179 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N | Environmental | Open in IMG/M |
3300022190 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N | Environmental | Open in IMG/M |
3300022198 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) | Environmental | Open in IMG/M |
3300022407 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D | Environmental | Open in IMG/M |
3300022543 | Indian_combined assembly | Environmental | Open in IMG/M |
3300023179 | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 | Environmental | Open in IMG/M |
3300024289 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h | Environmental | Open in IMG/M |
3300024573 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300024866 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300025339 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes) | Environmental | Open in IMG/M |
3300025357 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes) | Environmental | Open in IMG/M |
3300025389 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes) | Environmental | Open in IMG/M |
3300025426 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes) | Environmental | Open in IMG/M |
3300025450 | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes) | Environmental | Open in IMG/M |
3300025687 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
3300025818 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025843 | Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes) | Environmental | Open in IMG/M |
3300027563 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
3300027581 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes) | Environmental | Open in IMG/M |
3300027656 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes) | Environmental | Open in IMG/M |
3300027679 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes) | Environmental | Open in IMG/M |
3300027708 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027732 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes) | Environmental | Open in IMG/M |
3300027763 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027777 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027798 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
3300027805 | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) | Environmental | Open in IMG/M |
3300027808 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes) | Environmental | Open in IMG/M |
3300028085 | Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300029349 | Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103 | Environmental | Open in IMG/M |
3300029933 | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2 | Environmental | Open in IMG/M |
3300030294 | II_Fen_E3 coassembly | Environmental | Open in IMG/M |
3300031707 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20 | Environmental | Open in IMG/M |
3300031787 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 | Environmental | Open in IMG/M |
3300031999 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 | Environmental | Open in IMG/M |
3300032053 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 | Environmental | Open in IMG/M |
3300032092 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 | Environmental | Open in IMG/M |
3300032116 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 | Environmental | Open in IMG/M |
3300032156 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 | Environmental | Open in IMG/M |
3300032275 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom | Environmental | Open in IMG/M |
3300032516 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 | Environmental | Open in IMG/M |
3300033233 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom | Environmental | Open in IMG/M |
3300033557 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B | Environmental | Open in IMG/M |
3300033816 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 | Environmental | Open in IMG/M |
3300034012 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 | Environmental | Open in IMG/M |
3300034066 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 | Environmental | Open in IMG/M |
3300034071 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110 | Environmental | Open in IMG/M |
3300034105 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127 | Environmental | Open in IMG/M |
3300034112 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_102126102 | 3300000101 | Marine | AAGATSVTINAAIAVPGSVTAIPASSTIVFTQFPEVLVKLNFAIHSYQDATAV* |
TB18AUG2009E_0139072 | 3300000203 | Freshwater | ITISAAVAVPGGVTAIPSGSTIVFTNYPEILVKFNQGTHGYYYPVTV* |
B570J29032_1092811682 | 3300002408 | Freshwater | LNAAVAVPGGVTAIPSASTIVFTVYPEVLVKANLLVHAYYSSTSGQ* |
JGI25909J50240_11243411 | 3300003393 | Freshwater Lake | SVAAAAGATTVTINSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV* |
JGI25913J50563_10094834 | 3300003431 | Freshwater Lake | TTVTINSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV* |
Ga0007846_10069241 | 3300003797 | Freshwater | AISAGATSGTLNVAPAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV* |
Ga0007880_10088361 | 3300003827 | Freshwater | APAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV* |
Ga0007746_13976141 | 3300004763 | Freshwater Lake | ATSVTINSTIAVPGSVTAIPSASTIVFTQYPEMLVKLNFGTHSYYTATAV* |
Ga0007758_113629572 | 3300004790 | Freshwater Lake | VPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA* |
Ga0007759_101689672 | 3300004836 | Freshwater Lake | IAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA* |
Ga0068883_15417372 | 3300005419 | Freshwater Lake | AGDTSITLNAAIAVPGSVVAIPASSTVIFTIYRELLVKLNVLTHGYYSSVTA* |
Ga0049083_101131201 | 3300005580 | Freshwater Lentic | VTINSAIAVPGSVVAIPASSTIVFTQYPEVLVKFNQALHGYYSATGA* |
Ga0049080_101818432 | 3300005582 | Freshwater Lentic | VTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA* |
Ga0049080_102365221 | 3300005582 | Freshwater Lentic | SAIAVPGSVVAIPSSSTIVFIQYPEVLVKFNQALHGYYSATGA* |
Ga0007882_100469341 | 3300006104 | Freshwater | PGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV* |
Ga0075461_101609251 | 3300006637 | Aqueous | SVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA* |
Ga0098041_11297481 | 3300006928 | Marine | SAIAVPGSVTAIPADSTILFREYPEVLVKLNFEIHSYQDATAV* |
Ga0075460_101717841 | 3300007234 | Aqueous | IAVPGSVTAIPAASTVVFTIYRELLVKINVLTHGYYSSVTA* |
Ga0099848_12747242 | 3300007541 | Aqueous | DTSITLNAAIAVPGSVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA* |
Ga0099846_11434151 | 3300007542 | Aqueous | TLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA* |
Ga0114364_10049131 | 3300008267 | Freshwater, Plankton | VTTAAAAAATSVTINATIAVPGSVTAIPSASTIVFTQFPEVLVKFNQALHGYYSATGA* |
Ga0114364_11304161 | 3300008267 | Freshwater, Plankton | VTTAAAAAATSVTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA* |
Ga0114880_11316932 | 3300008450 | Freshwater Lake | PGSVTAIPSASTILFTQYPEMLVKLNFGTHSYYTATAV* |
Ga0105098_106847402 | 3300009081 | Freshwater Sediment | IAAPGSVVAIPSSSTIVFTVYRELLVKVNVLTHGYYSSVTA* |
Ga0114977_105351791 | 3300009158 | Freshwater Lake | AGATTVTINAAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA* |
Ga0114919_102624902 | 3300009529 | Deep Subsurface | FVDTAAAAGATSITLNAAIAVPGSVVAIPAASTVVFTIYRELLVKINLLTHGYYSSATA* |
Ga0133913_101290211 | 3300010885 | Freshwater Lake | NSGGYAAGTTSIAINAAIAVPGSVTAIPSSSTIVFTSYPEVLVKINFGIHNYYAA* |
Ga0153799_10577832 | 3300012012 | Freshwater | AATSVTINSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA* |
Ga0157540_1550762 | 3300012739 | Freshwater | AIAVPGSVTAIPSSSTIVFTQFPEVLVKLNQGLHGYYSATGA* |
Ga0157529_1637031 | 3300012741 | Freshwater | VTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA* |
Ga0138269_13713443 | 3300012778 | Freshwater Lake | SVTIDSAIAVPGSVTAIPSSSTVVFTVYNEILVKVNLLVHGYYSSATA* |
Ga0157528_1222301 | 3300012785 | Freshwater | VTAIPSSSTIVFTQFPEVLVKLNQGLHGYYSATGA* |
Ga0129343_14160751 | 3300012967 | Aqueous | NAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA* |
(restricted) Ga0172363_108433132 | 3300013130 | Sediment | SFLPISYAAGSTSLVLNAAIAAAGVTSIPSGATVVFTVYPEILVKANLLVHAYYSSTSGQ |
Ga0170791_149239272 | 3300013295 | Freshwater | VPGSVTAIPSSSTVVFTQYPELLVKLNFGTHSYYTGTAV* |
Ga0177922_102236212 | 3300013372 | Freshwater | PGSVTAIPSSSTIVFTQYPEVLVKFNQALHGYYSATGA* |
Ga0181338_10459991 | 3300015050 | Freshwater Lake | PGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA* |
Ga0181339_100143710 | 3300017700 | Freshwater Lake | NSAIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181364_10083073 | 3300017701 | Freshwater Lake | VTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181364_10225192 | 3300017701 | Freshwater Lake | AIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181364_10745462 | 3300017701 | Freshwater Lake | VTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181350_10713801 | 3300017716 | Freshwater Lake | AVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181350_11054941 | 3300017716 | Freshwater Lake | VTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181350_11635751 | 3300017716 | Freshwater Lake | SAAATSVTINSAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0181347_10521731 | 3300017722 | Freshwater Lake | AATSVTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0181352_10883631 | 3300017747 | Freshwater Lake | GSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181344_11759672 | 3300017754 | Freshwater Lake | AVAGATSVTLNAAIAVPGSVVAIPAASTIIFTVYPEVLVKINLLTHGYYSSATA |
Ga0181356_10629392 | 3300017761 | Freshwater Lake | AIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0181356_12306252 | 3300017761 | Freshwater Lake | SVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181357_10984702 | 3300017777 | Freshwater Lake | PGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181349_10938762 | 3300017778 | Freshwater Lake | TINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA |
Ga0181346_10747083 | 3300017780 | Freshwater Lake | INSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA |
Ga0181346_10931682 | 3300017780 | Freshwater Lake | VPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181346_11008022 | 3300017780 | Freshwater Lake | TINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0181348_11367122 | 3300017784 | Freshwater Lake | AVPGSVVAIPASSTIVFTQFPEVLVKFNQSLHGYYSATGA |
Ga0181348_13122211 | 3300017784 | Freshwater Lake | IDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTD |
Ga0181355_13665662 | 3300017785 | Freshwater Lake | TSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0180433_103305481 | 3300018080 | Hypersaline Lake Sediment | TVELNAAIAVPGGVTAIPAASTIVFTVYPEVLVKANLLVHAYYSSTSGQ |
Ga0181361_1060251 | 3300019783 | Freshwater Lake | GSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0181359_10300144 | 3300019784 | Freshwater Lake | AIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0211732_13695582 | 3300020141 | Freshwater | AGATTVTINSAIAVPGSVTAIPSASTIVFTQYPEMLVKLNFGTHSYYTATAV |
Ga0211729_1080042217 | 3300020172 | Freshwater | AGATTVELNAAIAVPGGVTTIPSASTIVFTVYPEVLVKANLLVHAYYSSTSGQ |
Ga0194134_103108942 | 3300020179 | Freshwater Lake | SVTINAAIDVPGSVTAIPASSTIIFTIYRELLVKLNVLTHGYYSSVTA |
Ga0208050_10161421 | 3300020498 | Freshwater | NSAIAVPGSVTAIPAASTIVFTQYPEMLVKLNFGTHSYYTGTAV |
Ga0208233_10430681 | 3300020529 | Freshwater | TLNAAIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0208235_10057444 | 3300020530 | Freshwater | VPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0207939_10245201 | 3300020536 | Freshwater | GDTSLTLNAAIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0208486_10121203 | 3300020556 | Freshwater | AIAVPGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0214165_10990421 | 3300021137 | Freshwater | NVAVNVPGSITAIPSASTILFTMYPEVLVKINFGIHEYYTATAV |
Ga0214168_10795782 | 3300021140 | Freshwater | AAPTTAFAAGSTLVFTQYPEVLVKFNFGYHGYYSATAV |
Ga0194048_101803141 | 3300021519 | Anoxic Zone Freshwater | AAAAGALSVTINATIAVPGSVTAIPAASTIVFTVYPEILVKTNLLIHGYYSSATA |
Ga0222714_104524662 | 3300021961 | Estuarine Water | NVAVAVPGSVTDIPAASTVIVTMYPEVLVKLNFAVHSYYTATAV |
Ga0222713_102682221 | 3300021962 | Estuarine Water | VTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA |
Ga0222712_101993423 | 3300021963 | Estuarine Water | INAAIDVPGSVTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA |
Ga0222712_103077902 | 3300021963 | Estuarine Water | AIAVPGSVVAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0212030_10665112 | 3300022053 | Aqueous | VDTAAAAGDTSITLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0181353_10974771 | 3300022179 | Freshwater Lake | VPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181354_11658222 | 3300022190 | Freshwater Lake | TIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0181354_11875761 | 3300022190 | Freshwater Lake | TAASAAATSVTINSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA |
Ga0181354_12181651 | 3300022190 | Freshwater Lake | TINVAIAVPGSVVAIPASSTIIFTQFPEVLVKFNQALHGYYSATGA |
Ga0181354_12475251 | 3300022190 | Freshwater Lake | ATSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0196905_10796752 | 3300022198 | Aqueous | SITLNAAVAVPGGVTAIPASSTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0181351_11666782 | 3300022407 | Freshwater Lake | STINSAIAVPGSVTAIPSSSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0181351_11920781 | 3300022407 | Freshwater Lake | NATSVTINSAIAVPGSVVAIPASSTIVFTQFPEVLVKLNQALHGYYSATGA |
Ga0181351_12225832 | 3300022407 | Freshwater Lake | AATSVTINSAIAVPGSVVAIPASSTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0212119_10853541 | 3300022543 | Freshwater | NSAIAVPGSVTAIPSASTILFTQYPEMLVKLNFGTHSYYTATAV |
Ga0214923_105453041 | 3300023179 | Freshwater | AVPGSVVAIPSGSTIVFTQYPEVLVKFNQGQHAYYSATAMA |
Ga0255147_10483442 | 3300024289 | Freshwater | SAIAVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV |
Ga0256337_10201084 | 3300024573 | Freshwater | AIAVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV |
Ga0255272_10100087 | 3300024866 | Freshwater | AVPGGVTAIPSSSTIVFTQYPEVLVKLNFGTHSYYTGTAV |
Ga0208502_10192031 | 3300025339 | Freshwater | VPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV |
Ga0208383_10159141 | 3300025357 | Freshwater | GVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV |
Ga0208257_10189272 | 3300025389 | Freshwater | VAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV |
Ga0208739_10143243 | 3300025426 | Freshwater | SGTLNVAPAVPGGVTAIPSASTIVFTNYPEVLVKLNFGIHEYYTATAV |
Ga0208744_11046812 | 3300025450 | Freshwater | NVPGSVTAIPSASTIIFTMYPEVLVKINFGLHEYYNATAV |
Ga0208019_11745471 | 3300025687 | Aqueous | TAAAAGDTSITLNAAIAVPGSVTAIPSASTVVFTVYPEILVKINVLTHGYYSSVTA |
Ga0208542_11270921 | 3300025818 | Aqueous | IAVPGSVTAIPAASTVVFTIYRELLVKINVLTHGYYSSVTA |
Ga0209182_102107681 | 3300025843 | Lake Sediment | INAAIAVPPSVVAIPAGSTIVFTQYPEVFCKVQFGAHSYYTATGA |
Ga0209552_11984361 | 3300027563 | Freshwater Lake | TINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0209651_12058721 | 3300027581 | Freshwater Lake | NSAIAVPGSVTAIPSASTIVFIQYPEVLVKLNQGLHGYYSATGA |
Ga0209357_10791802 | 3300027656 | Freshwater Lake | TINAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0209769_11413682 | 3300027679 | Freshwater Lake | AAATSVTINATIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0209188_10686923 | 3300027708 | Freshwater Lake | IAVPGSVTAIPSSSTVVFTVYNEILVKVNLLVHGYYSSATA |
Ga0209442_10984222 | 3300027732 | Freshwater Lake | PGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0209088_102972222 | 3300027763 | Freshwater Lake | PGSVVAIPSSSTIVFTQYPEVLVKFNQGQHEYYSATAMA |
Ga0209829_102301432 | 3300027777 | Freshwater Lake | AIAVPGSVTAIPSGSTIVFTMYPEVLVKFNQGTHGYYYPVAV |
Ga0209353_100270781 | 3300027798 | Freshwater Lake | INSAIAVPGSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0209353_100477171 | 3300027798 | Freshwater Lake | FVTVAAAAGDTSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0209229_100446681 | 3300027805 | Freshwater And Sediment | AGDTSVTINAAIAVPGSVTAIPAASSIVFTVYRELLVKLNVLTHGYYSSVTA |
Ga0209229_102422841 | 3300027805 | Freshwater And Sediment | AASAGATTVELNAAVAVPGGVTAIPASSTIVFTVYPEVLVKANLLVHAYYSSTSGQ |
Ga0209354_100878652 | 3300027808 | Freshwater Lake | AAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0255255_10234212 | 3300028085 | Freshwater | SVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0238435_1045633 | 3300029349 | Freshwater | FVATAASAGATSVTLNAAIAVPGSVVAIPSASTIVFTQYPEILVKMNLLVHGYYSSATA |
Ga0119945_10138282 | 3300029933 | Aquatic | GSVTAIPSGATIIFTIYRELLVKLNVLTHGYYSSVTA |
Ga0311349_117623952 | 3300030294 | Fen | IAVPGSITAIPSSSTIVFTSYPEVLVKINFGIHNYYAA |
Ga0315291_108835611 | 3300031707 | Sediment | GSVTAIPSASTIIFTQYPEMKVKLNFGTHSYYTATAV |
Ga0315900_106495061 | 3300031787 | Freshwater | AAATSVTINSAIAVPGSVTAIPSASTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0315274_108638442 | 3300031999 | Sediment | TTVTLNAAIAVPGSVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0315274_116568992 | 3300031999 | Sediment | VTINAAIAVPGSVTAIPSASTIIFTQYPEMKVKLNFGTHSYYTATAV |
Ga0315284_106672301 | 3300032053 | Sediment | AVPGSVVAIPASSTIVFTQYPEVLVKFNQALHGYYSATGA |
Ga0315284_107832512 | 3300032053 | Sediment | IAVPGSVTSIPAASTIVFTQYPEVKVKFDFGFHAYYAA |
Ga0315905_101223385 | 3300032092 | Freshwater | VTTAASAAATSVTINSAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0315905_103703163 | 3300032092 | Freshwater | SEIPSGATIVFTQYTEALVKLNFSQHQYYNATAVNAS |
Ga0315903_107295701 | 3300032116 | Freshwater | AAAAGDTSVTINAAVAVPGGVTSIPSASTIVFTQYPEVLIKLNFGTHSYYTGTGV |
Ga0315295_120285101 | 3300032156 | Sediment | GSVVAIPASSTIVFTQFPEVLVKFNQALHGYYSATGA |
Ga0315270_108318441 | 3300032275 | Sediment | GSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0315273_117178792 | 3300032516 | Sediment | ATTVTINAAIAVPGSVTAIPIASTIIFTQYPEMKVKLNFGTHSYYTATAV |
Ga0334722_111399711 | 3300033233 | Sediment | SVTINAAIAVPGSVVAIPSASTIVFTQYPEVLVKLNQALHGYYSATGA |
Ga0316617_1023509022 | 3300033557 | Soil | LNAAIAVPGGVTAIPSSSTVVFTVYPEILVKMNLLVHGYYSSTTA |
Ga0334980_0014374_3257_3418 | 3300033816 | Freshwater | AAGDTSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0334986_0231369_875_1015 | 3300034012 | Freshwater | TINSAIAVPGGITAIPAASTILFTQYPEMLVKLNFGTHSYYTGTAV |
Ga0334986_0548284_404_541 | 3300034012 | Freshwater | MNAAIAVPGSVTAIPSSSTVIFTVFPEILVKVNLLVHGYYSSATA |
Ga0335019_0475309_1_177 | 3300034066 | Freshwater | VSAAAAAGATTVTINSAIAVPGGITAIPAASTILFTQFPEMLVKLNFGTHSYYTGTAV |
Ga0335028_0050914_2660_2809 | 3300034071 | Freshwater | NSVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
Ga0335035_0170679_1192_1359 | 3300034105 | Freshwater | AASAAATSVTINSAIAVPGAVTAIPSASTIVFTQYPEVLVKLNQGLHGYYSATGA |
Ga0335035_0652698_430_546 | 3300034105 | Freshwater | PGSVTAIPSASTVVFTIYRELLVKLNVLTHGYYSSVTA |
Ga0335066_0067661_2184_2330 | 3300034112 | Freshwater | SVTINAAIDVPGSVTAIPSASTIVFTTFPELLVKLNVLTHGYYSSVTA |
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