Metagenome Family F057189

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057189
Family Type	Metagenome
Number of Sequences	136
Average Sequence Length	62 residues
Representative Sequence	LIDRRTFLAGTGAVLLAAPLAAEAQKSEKMARVGILGIGPAPSPQELAKSVSTNPFWLSM
Number of Associated Samples	114
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.37 %
% of genes near scaffold ends (potentially truncated)	94.85 %
% of genes from short scaffolds (< 2000 bps)	93.38 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.853 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.706 % of family members)
Environment Ontology (ENVO)	Unclassified (31.618 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.176 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 34.09% β-sheet: 0.00% Coil/Unstructured: 65.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF04392	ABC_sub_bind	37.50
PF12867	DinB_2	8.09
PF02518	HATPase_c	3.68
PF13103	TonB_2	1.47
PF00596	Aldolase_II	1.47
PF00106	adh_short	0.74
PF08264	Anticodon_1	0.74
PF00534	Glycos_transf_1	0.74
PF02538	Hydantoinase_B	0.74
PF00903	Glyoxalase	0.74
PF01738	DLH	0.74
PF04577	Glyco_transf_61	0.74
PF02371	Transposase_20	0.74
PF07238	PilZ	0.74
PF02954	HTH_8	0.74
PF00005	ABC_tran	0.74
PF02452	PemK_toxin	0.74
PF07769	PsiF_repeat	0.74
PF11716	MDMPI_N	0.74
PF01548	DEDD_Tnp_IS110	0.74
PF07508	Recombinase	0.74
PF01068	DNA_ligase_A_M	0.74
PF01545	Cation_efflux	0.74
PF01425	Amidase	0.74
PF00300	His_Phos_1	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	37.50
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.47
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.47
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.74
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.74
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.74
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.74
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.74
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.74
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.74
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.85 %
Unclassified	root	N/A	5.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.85 %
Unclassified	root	N/A	5.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.85 %
Unclassified	root	N/A	5.15 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	39.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.44 %
Unclassified	root	N/A	5.15 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	39.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.29 %
Unclassified	root	N/A	5.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	39.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.09 %
Unclassified	root	N/A	5.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	36.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.35 %
Unclassified	root	N/A	5.15 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.03 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.35 %
Unclassified	root	N/A	5.15 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.03 %
Unclassified	root	N/A	5.15 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.21 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.03 %
Unclassified	root	N/A	5.15 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.47 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.74 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100707760	Not Available	2194	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101277769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300000955\|JGI1027J12803_107035013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	656	Open in IMG/M
3300000955\|JGI1027J12803_108204773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	502	Open in IMG/M
3300002907\|JGI25613J43889_10069647	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300004019\|Ga0055439_10281512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	547	Open in IMG/M
3300004022\|Ga0055432_10264225	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300004025\|Ga0055433_10067452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	759	Open in IMG/M
3300004062\|Ga0055500_10066812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300005332\|Ga0066388_101897791	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300005332\|Ga0066388_107020334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300005332\|Ga0066388_107607026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300005339\|Ga0070660_101149971	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	657	Open in IMG/M
3300005345\|Ga0070692_10648325	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005347\|Ga0070668_100608638	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005367\|Ga0070667_101052010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	760	Open in IMG/M
3300005406\|Ga0070703_10084373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1089	Open in IMG/M
3300005436\|Ga0070713_101441779	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005445\|Ga0070708_100557648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1080	Open in IMG/M
3300005468\|Ga0070707_100613101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1051	Open in IMG/M
3300005471\|Ga0070698_101306473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300005518\|Ga0070699_100276491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1504	Open in IMG/M
3300005526\|Ga0073909_10540858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300005536\|Ga0070697_100951544	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300005559\|Ga0066700_10360906	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300005598\|Ga0066706_10572272	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300005718\|Ga0068866_10625711	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	730	Open in IMG/M
3300005764\|Ga0066903_101946455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1127	Open in IMG/M
3300005764\|Ga0066903_102280555	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300005764\|Ga0066903_108960616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
3300005843\|Ga0068860_100250215	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1726	Open in IMG/M
3300005843\|Ga0068860_101216494	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300006031\|Ga0066651_10769129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	521	Open in IMG/M
3300006806\|Ga0079220_11952083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300006854\|Ga0075425_100280874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300006918\|Ga0079216_10734115	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300007004\|Ga0079218_11849255	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300007076\|Ga0075435_101031876	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300009137\|Ga0066709_101260181	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300009148\|Ga0105243_12993384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300009162\|Ga0075423_10657739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1105	Open in IMG/M
3300009174\|Ga0105241_11151467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	732	Open in IMG/M
3300009814\|Ga0105082_1079324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300010043\|Ga0126380_10075391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1931	Open in IMG/M
3300010046\|Ga0126384_12414273	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300010325\|Ga0134064_10034951	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1490	Open in IMG/M
3300010358\|Ga0126370_10703569	Not Available	888	Open in IMG/M
3300010358\|Ga0126370_11202057	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300010359\|Ga0126376_10300846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1395	Open in IMG/M
3300010360\|Ga0126372_10208294	All Organisms → cellular organisms → Bacteria	1636	Open in IMG/M
3300010360\|Ga0126372_11693342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300010360\|Ga0126372_11949791	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300010362\|Ga0126377_11209265	Not Available	826	Open in IMG/M
3300010391\|Ga0136847_11688834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	757	Open in IMG/M
3300010398\|Ga0126383_10745192	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300010398\|Ga0126383_13329037	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300011269\|Ga0137392_11052051	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300011271\|Ga0137393_10380442	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300012096\|Ga0137389_10628334	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300012096\|Ga0137389_11254396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300012189\|Ga0137388_11242118	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012189\|Ga0137388_11469963	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300012201\|Ga0137365_11359369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	502	Open in IMG/M
3300012206\|Ga0137380_10911688	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300012285\|Ga0137370_10587747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300012350\|Ga0137372_10096471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2487	Open in IMG/M
3300012362\|Ga0137361_10466151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1160	Open in IMG/M
3300012363\|Ga0137390_11123239	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012499\|Ga0157350_1058380	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300012685\|Ga0137397_10149661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1728	Open in IMG/M
3300012918\|Ga0137396_10831661	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012944\|Ga0137410_12104239	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	503	Open in IMG/M
3300012948\|Ga0126375_11301246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300012960\|Ga0164301_11640923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300012971\|Ga0126369_11403714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	788	Open in IMG/M
3300012971\|Ga0126369_12266250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	630	Open in IMG/M
3300012971\|Ga0126369_13653099	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300014269\|Ga0075302_1022417	Not Available	1140	Open in IMG/M
3300014321\|Ga0075353_1068879	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300014873\|Ga0180066_1044891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	865	Open in IMG/M
3300014881\|Ga0180094_1097943	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300015359\|Ga0134085_10469682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300016371\|Ga0182034_12013669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300016445\|Ga0182038_10803789	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300018063\|Ga0184637_10294532	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	984	Open in IMG/M
3300018068\|Ga0184636_1225061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300019866\|Ga0193756_1047268	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300020006\|Ga0193735_1185073	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300020199\|Ga0179592_10341404	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300021086\|Ga0179596_10690257	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300021088\|Ga0210404_10418926	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300021090\|Ga0210377_10030214	All Organisms → cellular organisms → Bacteria → Proteobacteria	3879	Open in IMG/M
3300021432\|Ga0210384_11526144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300021560\|Ga0126371_10637879	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1214	Open in IMG/M
3300025916\|Ga0207663_10098239	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300025922\|Ga0207646_10507892	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300025933\|Ga0207706_11200549	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	630	Open in IMG/M
3300025935\|Ga0207709_10519432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	932	Open in IMG/M
3300026298\|Ga0209236_1190282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	791	Open in IMG/M
3300026341\|Ga0257151_1029621	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300026377\|Ga0257171_1010917	Not Available	1485	Open in IMG/M
3300026475\|Ga0257147_1000646	All Organisms → cellular organisms → Bacteria	3119	Open in IMG/M
3300026480\|Ga0257177_1023238	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300026514\|Ga0257168_1048486	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300026514\|Ga0257168_1086509	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300026537\|Ga0209157_1377470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300027651\|Ga0209217_1069292	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1038	Open in IMG/M
3300027654\|Ga0209799_1028446	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300027671\|Ga0209588_1018352	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300027775\|Ga0209177_10153606	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300027846\|Ga0209180_10285633	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300028381\|Ga0268264_10044691	All Organisms → cellular organisms → Bacteria → Proteobacteria	3675	Open in IMG/M
3300028803\|Ga0307281_10264740	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300028884\|Ga0307308_10591905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300031572\|Ga0318515_10114671	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300031720\|Ga0307469_10016545	All Organisms → cellular organisms → Bacteria	3857	Open in IMG/M
3300031720\|Ga0307469_11519520	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300031720\|Ga0307469_11894674	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031880\|Ga0318544_10271299	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	658	Open in IMG/M
3300031949\|Ga0214473_12235696	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300031962\|Ga0307479_10428464	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300031997\|Ga0315278_10548067	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1187	Open in IMG/M
3300032164\|Ga0315283_12025442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300032174\|Ga0307470_11436378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300032180\|Ga0307471_101212061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	919	Open in IMG/M
3300032180\|Ga0307471_102486325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300032180\|Ga0307471_103319254	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032892\|Ga0335081_12091325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	600	Open in IMG/M
3300033004\|Ga0335084_10831646	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300033433\|Ga0326726_11294329	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300033500\|Ga0326730_1058685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	733	Open in IMG/M
3300033814\|Ga0364930_0179909	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300033814\|Ga0364930_0203230	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300034178\|Ga0364934_0172546	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.71%
Host-Associated	Host-Associated	10.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.88%
Plants	Host-Associated → Plants	10.29%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.35%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Marine	Environmental → Aquatic → Marine	2.94%
Sediment	Environmental → Aquatic → Sediment	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Floodplain	Environmental → Terrestrial → Floodplain	2.21%
Peat	Environmental → Terrestrial → Peat	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.56%
Loam	Environmental → Terrestrial → Soil → Loam	13.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.41%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Lake	Environmental → Aquatic → Freshwater → Lake	2.21%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Sand	Environmental → Terrestrial → Soil → Sand	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.41%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.21%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.21%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.21%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.47%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.47%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.47%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.47%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.47%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1007077603	3300000364	Soil	VDRRRFIAGSVTLLATPVAAEAQKSEKIARVGILGLGPTPTPQALAESVATNPFWLAMRRLGW
INPhiseqgaiiFebDRAFT_1012777692	3300000364	Soil	MGAVLLAAPRPAEAQKSEKMARVGVLNIGPAPSPQELAQSVSTNQFRLSL
JGI1027J12803_1070350132	3300000955	Soil	MERRAFLAGTGAVLLATPFAAEAQKSEKVARVGILNIGPAPSPQELAQSVSTNQFWVSMRQLGWVDGQNMVVE
JGI1027J12803_1082047732	3300000955	Soil	MERRAFLAGTGAVLLVTPFAAEAQKSEKMARVGILNIGPPPSPQELAQSVSTNQFWLSMRQLGWVDGQNMVVE
JGI25613J43889_100696471	3300002907	Grasslands Soil	MDRRVFLRALSGGLLAAPLAAEAQKPEKKARVGILNLGSAPSPGELAQSVATNEFWLSMRQLGWV
Ga0055439_102815121	3300004019	Natural And Restored Wetlands	VIDRRALLSGACAVLLAASRAAEAQKTEKKARVGILGIGTAPSPQDLARSVSTNPFWQSMKELGWVDGQNMVVERR
Ga0055432_102642251	3300004022	Natural And Restored Wetlands	MMDRRTFLAGTGAVLLLAPLGAEAQKLEKMARVGILGIGPAPSPQELAQSVSTNPFWLSMRELGWVD
Ga0055433_100674521	3300004025	Natural And Restored Wetlands	VIDRRTFLAGTGVVLLAAPVAAEAQKSQKMARVGILGIGPAPSPQELVKSVSTNPFWLSMREFGWVDGQN
Ga0055500_100668122	3300004062	Natural And Restored Wetlands	MDRRAFLAGTGAVLLAAPRGAEAQKPDKKARVGVLGIGPIPSPQELAKSVATNALWQSMKELGWVDGQNMVV
Ga0066388_1018977912	3300005332	Tropical Forest Soil	MNRRAFVTGLGAVLAAPLAAEAQKSEKTARVGILGLGPVPSPQALATSVSTNPFWISMRQ
Ga0066388_1033798362	3300005332	Tropical Forest Soil	MNRRTFLVVASWSLLAAPRAAEAQEPTKVARVGILSAGPTPSGDELAKSVSTNPLWLSMRQLGWRYGENMIVERRFG
Ga0066388_1070203342	3300005332	Tropical Forest Soil	MNRRMFLGTLAGGLLIAPLATEAQLATKMARVGILNMGPAPTPQELAKSVATNPFWLSMKQLGWVDGQN
Ga0066388_1076070262	3300005332	Tropical Forest Soil	MDRRRFVLGAAAGLVATPLAVHAQKSERSARVGILNIGPRPSPPELAKSIATNRFWLSMRQLG
Ga0070660_1011499711	3300005339	Corn Rhizosphere	MMDRRRFVLTSLAMALAAPLEAEAQKSEKMARVGILGIGPAPNPQELAKSVSTNPFW
Ga0070692_106483252	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKRRGFIGMLAVGLLAAPLPAEAQKSEKMARVGILGIGSVPSPQDLAMSVSTNLFWLSMRQLGWVD
Ga0070668_1006086381	3300005347	Switchgrass Rhizosphere	MDRRVFLSALSGGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSVATNQFWLSMRQLGWVD
Ga0070667_1010520101	3300005367	Switchgrass Rhizosphere	MIDRRAFLAGTGAVLLAAPLAAEAQKSEKKARVGILGLGPTPTPQELAKSVATNPLWLSMRQLGWVDG
Ga0070703_100843731	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VDRRTFIAAVTGGLLAAPLAVEAQKSEKRSRVGILGIGPAPSPLELARS
Ga0070713_1014417791	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDRRVFLGALSGGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSVATNEFWLSMRQLGW
Ga0070708_1005576481	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VERREFVVIVGLALLAAPPAAGAPKSEKMARVGILGAGPVPSPQELAKSVSTNRLWQSMRQLGWV
Ga0070707_1006131012	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDGHHAMERRTFLAMVSGGLLATPLAAEAQKSEKIARVGILGLGPVPSPQ
Ga0070698_1013064732	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRTFLAGTGAVLLAAPLAAEAQKPEKIARVGILGIGPAPSPQELAKSVATNPFWLSMRQLGW
Ga0070699_1002764913	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDRRAFLSTVAGGLLAAPLAAEAQKSEKMARVGILGIGPTPGPQELAKSISTNPFWLSMR
Ga0073909_105408581	3300005526	Surface Soil	MERRAFLAGAGAVLLATSFAAEAQKSEKMARVGILNIGPAPSPQELAQSISTNQFWLSMKQLGWIDGQNMIVE
Ga0070697_1009515442	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MISRRAFIGSVAGGLLAAPLAAKAQRSEKMARVGILGIGTAPSPQELA
Ga0066700_103609062	3300005559	Soil	MDRRTFLAGTGAAFLARPLAAEAQTPEKKPRVGILNIGPTPSPQELARSVSTNPFWRSMRELGWVDG
Ga0066706_105722721	3300005598	Soil	MDRRVFLGALSGGLLAAPLAAEAQKPEKKARVGILNLGSAPGPEELAQSVATNQFW
Ga0068866_106257111	3300005718	Miscanthus Rhizosphere	MDRRRFLVASLAGALAAPLAAGAQKSEQMARVGILGIGPAPSPQELAKS
Ga0066903_1019464551	3300005764	Tropical Forest Soil	MDRRAFIATSASAILAVPFAAEAQKSEKMARVGILGIGPVPSPQDLAKSVSTNPFW
Ga0066903_1022805553	3300005764	Tropical Forest Soil	VKRRAFLGTLTAGLLAAPLATAAQKSEKIARVGILGIGSAPSPQELARSVATNPFWQSMRQLGWVDGQNM
Ga0066903_1089606162	3300005764	Tropical Forest Soil	VISRRAFIATVAGILGAPLVGEAQKSEKMARVGILGFGPVPSPQDLATSVSTNLFWISMRQLGWVDGKNMVVERR
Ga0068860_1002502153	3300005843	Switchgrass Rhizosphere	MIDRRAFLAGTGAVLLAAPLAAEAQKSEKKARVGILGLGPTPTPQELAKSVATNRSGCR*
Ga0068860_1012164942	3300005843	Switchgrass Rhizosphere	MDRRRFLVASLAGALAAPLAAGAQKSEQMARVGILGIGPAPSPQELAKSVSTNPFW
Ga0066651_107691292	3300006031	Soil	VIGRRTFLAGAGAVVLAAPLAVEAQKSEKRVRVGILGIGPAPSPQELARSVSTNRL
Ga0079220_119520831	3300006806	Agricultural Soil	MDRRSFLGTLASGLLAAPLVAEAQKSEKLAHVGILGLGPTPSPQELAKSVSTNPF
Ga0075425_1002808741	3300006854	Populus Rhizosphere	VNRRRFLLTSLAGLATPFVAEAQKSEKMARVGILGFGPVPSPQELAKSVSTNPFWMSMRELGWVDGQN
Ga0079216_107341151	3300006918	Agricultural Soil	MKRRAFIGTLAVGLLAAPLAAEAQKSEKMARVGILGIGPVPSPQELAKSVSTNL
Ga0079218_118492551	3300007004	Agricultural Soil	MKRRAFIGTLAVGLLAAPLAAEAQKSEKMARVGILGIGPVPSPQELAKSVSTNLFWLS
Ga0075435_1010318762	3300007076	Populus Rhizosphere	MMDRRTFLAGTGALFLAVPLAAEAQQSTKVARVGVLGAGPTPSADELAKSVSSNPLWLSMRQLGWRYGENM
Ga0066709_1012601812	3300009137	Grasslands Soil	MAGGLLAAPLAVKAQKSEKLAHVGILGLGPTPSPQELAKSVSTNPFWLSMRQL
Ga0105243_129933842	3300009148	Miscanthus Rhizosphere	MERRAFLAGAGAVLLATPFAAEAQKSEKVARVGILNIGPAPSPQELAQSVSTNQFWLSMRQLGWVDG
Ga0075423_106577394	3300009162	Populus Rhizosphere	MNRRTFLCGLTLGAMAAPLAAVAQKSEKMARVGILGIGPVPSPQDLATSVATNQFWMSMRQLGWIDGQ
Ga0105241_111514671	3300009174	Corn Rhizosphere	MDRRRFLLTSLAGAIIAPLAAEAQKSEKMARVGILGIGPAPSPQELAK
Ga0105082_10793241	3300009814	Groundwater Sand	MMNRRTFLGVLAGSFLAAPLAAEAQKSEKKARVGILGIGTAPSPQELAKSVSTNPF*
Ga0126380_100753911	3300010043	Tropical Forest Soil	VIFRRTFVCALAPGLLAAPLGAEAQQSEKMARVGILGFGPVPSPQDLATSVSTNLFWTSMRQLGWID
Ga0126384_124142732	3300010046	Tropical Forest Soil	MSESTVMDRRTLLAGMGAVLLARPLTADAQKSGKMVHVGILGIGPVPSPQELEKSVSTNPF*
Ga0134064_100349511	3300010325	Grasslands Soil	MAGGLLAAPLAVKAQKSEKLAHVGILGLGPTPSPQELAKSVSTNPFWLSMRQLGWVD
Ga0126370_107035691	3300010358	Tropical Forest Soil	VKRRAFLGTLTAGLLAAPLATAAQKSEKIARVGILGIGSAPSPQELAR
Ga0126370_112020571	3300010358	Tropical Forest Soil	MDRRAFIATSATAILAVPFAAEAQKSEKMARVGILGIGPVPSSEDLAKSVSTNPFWMSM
Ga0126376_103008461	3300010359	Tropical Forest Soil	VISRRAFVASLTGGLLTAPPAAEAQKSERIARVGILGIGSAPSPQEFAWSRTPG
Ga0126372_102082943	3300010360	Tropical Forest Soil	VKRRAFLGTLTAGLLAAPLATAAQKSEKIARVGILGIGSAPSPQELARSVATNPFWQSMRQLGWVDG
Ga0126372_116933421	3300010360	Tropical Forest Soil	MNRRAFVTGLGAVLATPLAAEAQKSEKMARVGILGLGPVPSPQALATSVSTN
Ga0126372_119497912	3300010360	Tropical Forest Soil	VDRRRFLLTSLAGLAAPFAAEAQKSEKMARVGILGYGPVPSPQELAKSVSTNPFWMSMRGLGWVDGQN
Ga0126377_112092652	3300010362	Tropical Forest Soil	MDRRMFMTGLGAVLARPPVAEAQEYTKVARVGVLGAGPNPNADELAKSISTNPLWMAMRQLGW
Ga0136847_116888341	3300010391	Freshwater Sediment	MDRRAFLAGTGAVLLAAPCGAEAQKSEKMARVGILGIGTAPSPQELARSVSTNPFWASMRQLGWVDGQNMVVERRFGESAEQ
Ga0126383_107451923	3300010398	Tropical Forest Soil	MIDRRMFVGTLAGGILATQFAAEAQKPEKMARVGILGLGPVPSPQELAKS
Ga0126383_133290371	3300010398	Tropical Forest Soil	MDRRAFVICLGAVLATPLAVEAQKSEKVVRVGILGAGPTPSREELAKSVSTNPLWLSMRQLGWVDGQNMIVER
Ga0137392_110520512	3300011269	Vadose Zone Soil	MIERRTFLAGTGAVLIGAPLTAEAQKSEKMARVGILGIGPAPSPQELVKSVSTNRFWLSMRETQ*
Ga0137393_103804421	3300011271	Vadose Zone Soil	MDRRAFLDALAACLIAAPLAAEAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMRQL
Ga0137389_106283341	3300012096	Vadose Zone Soil	MDRRVFLSALSGSLLAAPFAAEAQKSEKTARVGILNLGPAPSPEELAQSVS
Ga0137389_112543962	3300012096	Vadose Zone Soil	MNRRTFLCGLTLGPLAAPLAAQAQKSEKLPHVGILGLGPTPSPQELAKSVS
Ga0137388_112421182	3300012189	Vadose Zone Soil	MDRRVFLSALSGSLLAAPFAAEAQKSEKTARVGILNLGPAPSPEELAQSVSTNQFWLSMRQLGWVDGQNMVVERRF
Ga0137388_114699632	3300012189	Vadose Zone Soil	MDRRVFLSALGGSLLAAPLAAEAQKSEKMARVGILNLGTAPSPEELAQSVSTNQFWLSMRQLGWVDGQ
Ga0137365_113593691	3300012201	Vadose Zone Soil	MAGGLLAAPLAAEAQKSEKMARVGILGIGPAPSPQELVKSVSTNPFWLSMRELG
Ga0137380_109116881	3300012206	Vadose Zone Soil	MDRRTFLAGTGAAFLARPLAAEAQKPEKKPRVGILNIGATPSPQELARSVSTNPFWRSMRELGWVDGQNM
Ga0137370_105877471	3300012285	Vadose Zone Soil	MDRRSFLGIVGTGLLTAPLAAEAQKSEKMPRVGILNIGPAPSPQELAMSVATNPFWMSM
Ga0137372_100964711	3300012350	Vadose Zone Soil	MDRRAFLAGTSAVLLAAPLAAEAQKSERMARVGILGIGTAPSPQELAKSVATN
Ga0137384_103201845	3300012357	Vadose Zone Soil	MGGLAGGLLAAPLTAQAQKSEQLAHVGILGLGPTPSPQELAKSVSTNPFWLAMRQLGWVDGQNMVVERRFGES
Ga0137361_104661511	3300012362	Vadose Zone Soil	DRIVDRRTFISGATLGLLATPLAAEAQVSTKVARVGILGAGPTPSPEDLAKSVATNPLWLSMRQLG*
Ga0137390_111232391	3300012363	Vadose Zone Soil	MIERRTFLAGTGAVLIGAPLTAEAQKSEKMARVGILGIGPTPSPEELAQSVSTNQFWLSMRQLGWVDGQNMVVERRFG
Ga0157350_10583801	3300012499	Unplanted Soil	MERRAFLAGAGAVLLATSFAAEAQKSEKMARVGILNIGPAPSPQELAQSISTNQ
Ga0137397_101496611	3300012685	Vadose Zone Soil	MDRRAFIAVIGGGLLAAPLAAEAQKSDKMARVGILGIGPAPSPQELAESISTNPF
Ga0137396_108316612	3300012918	Vadose Zone Soil	MERRAFLAGTGAALLVAPRAAEAQKSEKRARVGILGIGPVPSPQDLAKSVSTNPFWMSMRQLGGVDGQNMVVERRFG
Ga0137410_121042391	3300012944	Vadose Zone Soil	RGAEPARGGGMMSLRAALTVLLVLSLLAAPLAAEAQKSEKTARVGILNLGPAPSPEELAQ
Ga0126375_113012462	3300012948	Tropical Forest Soil	MDRRTFLSTMSGAVLLARPLAADAQKSGKMVHVGILGIGPVPSPQELEKSVSTNPF
Ga0164301_116409231	3300012960	Soil	VIDRRTFLAGTGAVLLAAPLAAEAQKSEKMARVGILGIGPAPSPQELVKSVSTN
Ga0126369_114037142	3300012971	Tropical Forest Soil	MDRRLFIATSASAILAVPLAAQAQKSEKMARVGILGIGPVPSPQELAKSVSTNPF
Ga0126369_122662501	3300012971	Tropical Forest Soil	MSGAVLLARPLAADAQKSGKMVHVGILGIGPVPSAQELEKSVSTNPFW
Ga0126369_136530991	3300012971	Tropical Forest Soil	MTTRRAFLGTLVGGLLAAPAATAAQKSEKIARVGILGIGSAPSPQELAKSVETNPFWQSMRQLGWVDGQNM
Ga0075302_10224171	3300014269	Natural And Restored Wetlands	VIDRRTFLAGTGVVLLAAPVAAEAQKSQKMARVGILGIGPAPSPQELVKSVSTNPFWLSMRE
Ga0075353_10688792	3300014321	Natural And Restored Wetlands	VLDRRAFLAGAGAALLAAPRASEAQKPESGKKARVGILGVGPAPSPQELAKSVATNRFWLSMRDLG
Ga0180066_10448912	3300014873	Soil	LIDRRTFLAGTGAVLLAAPLAAEAQKSEKMARVGILGIGPAPSPQELAKSVSTNPFWLSM
Ga0180094_10979432	3300014881	Soil	MDRRAFLAGTGAVLLAAPRAAEAQKSEKMARVGILGIGPAPSPQELAKSVSTNPFWLSMRELGWVDGQNMVV
Ga0134085_104696821	3300015359	Grasslands Soil	VIDRRTFLAGTGAVLLAAPLAVEAQPARKTARVGVLGVGPTPSLEELARSVSTNPLWLSLREL
Ga0182034_120136692	3300016371	Soil	VICRRAFVAGLTGGLLVAPLATVAQKSEKIARVGILGIGPAPGPQELAKSVATNPFWLSMRQLGWVDGKNMVVERRFGETT
Ga0182038_108037891	3300016445	Soil	MPLAAEAQKPGKVPHMGILGLGPVPTARALAESVSTNPFWQSMRQLGWVDGQTLVVER
Ga0184637_102945322	3300018063	Groundwater Sediment	LAGTGAVLLATPLAAEAQKSAKMARVGILGIGPAPSPQELVKSVSTNPF
Ga0184636_12250611	3300018068	Groundwater Sediment	MRRRAFIGTLAAGLLAVPLAAAAQKSEKMARVGILGIGPAPNPQELAKS
Ga0193756_10472682	3300019866	Soil	MDRRVFLSALSGSLLAAPLAAEAQKSEKTARVGILNLGPAPSPEELAQSVSTNQFWLSMRQLGWVD
Ga0193735_11850731	3300020006	Soil	MDRRVFLSALSGGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSVATNQFWLSMRQLGWVDG
Ga0179592_103414041	3300020199	Vadose Zone Soil	MDRRMFIATLAGGLLAAPLTAGAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMRRLGWV
Ga0179596_106902572	3300021086	Vadose Zone Soil	VINRRAFLAGTGAVLLGAPRTAGAQKSEKKARVGILGIGTAPSPPELAKSVATNPFWLSMRELGWVDGQNMVV
Ga0210404_104189262	3300021088	Soil	MDRRVFLSALSGGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSV
Ga0210377_100302141	3300021090	Groundwater Sediment	MDRRTFLAGTGAVLLAAPRGVEAQKSEKMARVGILGIGPVPSPQELAKSVATNPFWLSM
Ga0210384_115261441	3300021432	Soil	LDRRTFVCALTGGLLAAPLAAEGQKSEKMVRVGILGVGPAPSPQELAMSVSTNPF
Ga0126371_106378792	3300021560	Tropical Forest Soil	VISRRAFVASLTGGLLTAPPAAEAQKSEKIARVGILGIGSAPSPQEFAWSRTPGWVV
Ga0207663_100982393	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VIDRRTFLAGTGAVLLAAPLAAEAQKSVKMARVGILGIGPTPSPQELSKSVSTNPFWISMRELGWID
Ga0207646_105078922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDGHHAMERRTFLAMVSGGLLATPLAAEAQKSEKIARVGILGLGPVPSPQELAKSVSTNP
Ga0207706_112005491	3300025933	Corn Rhizosphere	MDRRRFLLTSLAGVLAVPLDAEAQKSEKMARVGILGIGPAPSPPELAKSVSTNPFWLSMRQLGWVGGQNMVVERR
Ga0207709_105194323	3300025935	Miscanthus Rhizosphere	MDRRRFVLTSLAMALAAPLEAEAQKSEKMARVGILGIGPAPSPQELAKSVSTNPFWLSMR
Ga0209236_11902821	3300026298	Grasslands Soil	MTSVMERRAFLTGTGALLLAAPLAAAAQKSEKLAHVGILGLGPTPSPQELAKSVSTNPFWLSMRQLGWVD
Ga0257151_10296212	3300026341	Soil	MQVDSGHRVMERRTFLGVITGGLLAAPLAAGAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMR
Ga0257171_10109171	3300026377	Soil	MQVDSGHRVMERRTFLGVITGGLLAAPLAAGAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMRQLG
Ga0257147_10006464	3300026475	Soil	MAMQVDSGHRVMERRTFLGVITGGLLAAPLAAGAQKSEKMARVGVLGVGPTPSPEELAKSVSTNP
Ga0257177_10232382	3300026480	Soil	MDRRVFLSALSGSLLAAPFAAEAQKSEKTARVGILNLGPAPSPEELAQSVSTNQFWLSMRQLGWVDGQNMVVER
Ga0257168_10484863	3300026514	Soil	MMDRRAFLDALAACLIAAPLAAEAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMRQL
Ga0257168_10865092	3300026514	Soil	MDRRVFLSALSGGLLAAPLAAEAQKSEKKACVGILNLGSAPSPEELAQSV
Ga0209157_13774702	3300026537	Soil	VIDRRTFLAGTGAVLLAAPLAVEAQPPRKTARVGVLGVGPTPSLEELARSVSTNPLWLSL
Ga0209217_10692921	3300027651	Forest Soil	VVNRRVFLGTLAGSLLAAPLAAEAQKSEKMARVGILNLGPVPSREELAQSVSTNQFWLSMRQLGWVDGKT
Ga0209799_10284462	3300027654	Tropical Forest Soil	MGVLTGGLLAAPLANAAQKSEKIARVGILGIGSAPSPQELAKSVATNPFWLSMRQLGW
Ga0209588_10183524	3300027671	Vadose Zone Soil	MAMQVDSGHRVMERRTFLGVITGGLLAAPLAAGAQKSEKMARVGVLGVGPTPSPEELAKSVSTNPLWLSMRQLG
Ga0209177_101536061	3300027775	Agricultural Soil	MDRRVFLSALSAGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSVATNEFWL
Ga0209180_102856332	3300027846	Vadose Zone Soil	MISRRAFINTLASGLLAAPLAAEAQKSEKMARVGILGIGTAPTPQELAKSVATNPFWLS
Ga0268264_100446917	3300028381	Switchgrass Rhizosphere	MSRFCDTTPLMDRRRFVLTSLAMALAAPLEAEAQKSEKMARVGILGIGPAPNPQELAKSVSTNPFWLSMRQL
Ga0307281_102647402	3300028803	Soil	VITRRAFLGTVAGSLLASPLAAEAQKSEKMARVGILGVGPTPSPQELAKSVSTNRFWLSMRQLGWVEGQNV
Ga0307308_105919051	3300028884	Soil	MNRRAFLSALSGSLLTAPIAAEAQKSEKMARVGILGIGPAPNPQELAKSVSTNPFWLSMRQLGWVDGQNMVV
Ga0318515_101146711	3300031572	Soil	VICRRAFVAGLTGGLLVAPLATVAQKSEKIARVGILGIGPAPGPQELAK
Ga0307469_100165451	3300031720	Hardwood Forest Soil	MIDRRAFLAGTGAVLLAAPLAAEAQKSEKKARVRILGLGPTPTPQELAKSVATNPLWLSMRQLGWVDGQ
Ga0307469_115195202	3300031720	Hardwood Forest Soil	MERRTFLASTCAVLLAAPFAAHAQKSGKTARVGVLNIGPAPSPQELAQSVSTNQFWL
Ga0307469_118946742	3300031720	Hardwood Forest Soil	VDRRTFLAGTGAVLLAAPLAAEAQKSVKMARVGILGIGPTPSPQELAKSVSTNPFWISMRELG
Ga0318544_102712992	3300031880	Soil	VICRRAFVAGLTGGLLVAPLATVAQKSEKIARVGILGIGPAPGPQELAKSVATNPFWLSMRQLGWVDGKNM
Ga0214473_122356961	3300031949	Soil	MDRRAFIVGGVGVLAAPFAAGAQESGKIARVGILGIGPSPSPQELAKSVSANEFWRSMRQLGWVDG
Ga0307479_104284641	3300031962	Hardwood Forest Soil	MDRRVFLSALSGGLLAAPLAAEAQKSEKKARVGILNPGSAPSPEELAQSVATNQFWL
Ga0315278_105480672	3300031997	Sediment	VIDRRAFLAGTGAVLLAAPRAAEAQKSEKKARVGILGIGTAPSPQELARSVSTNPFWASM
Ga0315283_120254421	3300032164	Sediment	LIDRRAFLAGTGTVLLAVARAAEAQKSEKMARVGILGVGSVPSPQELAKSVSTNPFWLSMRQLGWVDGQNMVV
Ga0307470_114363781	3300032174	Hardwood Forest Soil	MDRRGFLAGVGAILLAAPRIAEAQKSEKKARVGILNLGSAPSPEELAQSVA
Ga0307471_1012120611	3300032180	Hardwood Forest Soil	VIDRRVFVGTLAGGILATQFAAEAQKPEKMARVGILGLGPVPSPQELAKSVATNPFWMSMRELGWVDGQNMVVER
Ga0307471_1024863251	3300032180	Hardwood Forest Soil	VDRRAFLAGTGVVLLTVPLVAEAQKSEKKARMGILGIGPAPSPQELARSVST
Ga0307471_1033192542	3300032180	Hardwood Forest Soil	MDRRVFLSALSGGLLAAPLAAEAQKSEKKARVGILNLGSAPSPEELAQSVATN
Ga0335081_120913251	3300032892	Soil	MKPRAVLLLALTLGLLTAPLASEAQQAGKMPHVGILGIGPTPGPQELAKSVSTNPF
Ga0335084_108316461	3300033004	Soil	VSTRRSFIGALAGGLLAAPRALEAQPARKTARVGVLGVGPTPSPQELARSVSTNPLWL
Ga0326726_112943291	3300033433	Peat Soil	LLDRRTFLAGTGAVILTAPLAVEAQKSEKVARVGILGIGPAPSPQELAKSVSTNPFWLSMREL
Ga0326730_10586851	3300033500	Peat Soil	MERRVFIAAVTGGLLATPFAAEAQKSEKMPRVGILGIGPAPSPPELAKSVATNRFWLSMRDLG
Ga0364930_0179909_3_188	3300033814	Sediment	MDRRAFLAGSGAVLLASPRAVEAQKSEKKARVGILGIGPAPSPQELAKSVSTNPFWLSMREL
Ga0364930_0203230_480_671	3300033814	Sediment	MIDRRTFLAGTGAVLLAAPRAAEAQKSEKMARVGILGIGPAPSPQELAKSVSTNPFWLSMRQLG
Ga0364934_0172546_1_216	3300034178	Sediment	MIKRRAFIVGGVAALATPLAAGARESDKIARVGILGIGPSPSRQELAKSVSANEFWLSMRQLGWVDGQNMVV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F057189

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences