Metagenome / Metatranscriptome Family F057262

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	64 residues
Representative Sequence	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Number of Associated Samples	108
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.91 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	72.06 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.971 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.147 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 19.57% Coil/Unstructured: 55.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF09391	DUF2000	12.50
PF00072	Response_reg	3.68
PF00581	Rhodanese	2.94
PF00248	Aldo_ket_red	2.94
PF12833	HTH_18	2.21
PF09900	DUF2127	2.21
PF00106	adh_short	1.47
PF09335	SNARE_assoc	1.47
PF01355	HIPIP	1.47
PF13561	adh_short_C2	0.74
PF13493	DUF4118	0.74
PF04542	Sigma70_r2	0.74
PF06912	DUF1275	0.74
PF07485	DUF1529	0.74
PF07080	DUF1348	0.74
PF03243	MerB	0.74
PF00529	CusB_dom_1	0.74
PF02518	HATPase_c	0.74
PF00165	HTH_AraC	0.74
PF13419	HAD_2	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.47
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.47
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.47
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.74
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.74
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.74
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	0.74
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.74
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.97 %
Unclassified	root	N/A	11.03 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.53 %
Unclassified	root	N/A	11.03 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.47 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.74 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	5.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.47 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.74 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.47 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.74 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	1.47 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.74 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.21 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1.47 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.74 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG04H2V67	Not Available	514	Open in IMG/M
2088090014\|GPIPI_17245412	All Organisms → cellular organisms → Bacteria	5024	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2060642	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300000443\|F12B_12045803	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300002914\|JGI25617J43924_10109901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	979	Open in IMG/M
3300004114\|Ga0062593_102683995	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300004156\|Ga0062589_100773918	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300004463\|Ga0063356_100024508	All Organisms → cellular organisms → Bacteria	5711	Open in IMG/M
3300005294\|Ga0065705_10347251	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300005343\|Ga0070687_100018689	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
3300005356\|Ga0070674_101126839	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005365\|Ga0070688_101066937	Not Available	644	Open in IMG/M
3300005406\|Ga0070703_10053327	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300005434\|Ga0070709_10015933	All Organisms → cellular organisms → Bacteria → Proteobacteria	4281	Open in IMG/M
3300005440\|Ga0070705_100040735	All Organisms → cellular organisms → Bacteria → Proteobacteria	2644	Open in IMG/M
3300005444\|Ga0070694_101085997	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300005444\|Ga0070694_101431921	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005445\|Ga0070708_100584024	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005445\|Ga0070708_101431175	Not Available	644	Open in IMG/M
3300005458\|Ga0070681_11472224	Not Available	605	Open in IMG/M
3300005467\|Ga0070706_100031197	All Organisms → cellular organisms → Bacteria → Proteobacteria	4915	Open in IMG/M
3300005467\|Ga0070706_101375316	Not Available	646	Open in IMG/M
3300005471\|Ga0070698_100110965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2707	Open in IMG/M
3300005471\|Ga0070698_100179391	All Organisms → cellular organisms → Bacteria → Proteobacteria	2056	Open in IMG/M
3300005471\|Ga0070698_100341059	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300005529\|Ga0070741_10013174	All Organisms → cellular organisms → Bacteria	14692	Open in IMG/M
3300005536\|Ga0070697_100069950	All Organisms → cellular organisms → Bacteria	2876	Open in IMG/M
3300005549\|Ga0070704_100031094	All Organisms → cellular organisms → Bacteria → Proteobacteria	3586	Open in IMG/M
3300005549\|Ga0070704_100207674	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1585	Open in IMG/M
3300005842\|Ga0068858_100235603	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300005843\|Ga0068860_100315441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1534	Open in IMG/M
3300005878\|Ga0075297_1029841	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300006755\|Ga0079222_11485108	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300006852\|Ga0075433_10476637	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300006852\|Ga0075433_10880060	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300006854\|Ga0075425_100274809	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300006854\|Ga0075425_100449299	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300006854\|Ga0075425_100466308	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300006871\|Ga0075434_100271869	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300007255\|Ga0099791_10407639	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300009038\|Ga0099829_10012041	All Organisms → cellular organisms → Bacteria	5656	Open in IMG/M
3300009038\|Ga0099829_10315005	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300009038\|Ga0099829_10801855	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300009090\|Ga0099827_10892101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	770	Open in IMG/M
3300009147\|Ga0114129_10009471	All Organisms → cellular organisms → Bacteria	13882	Open in IMG/M
3300010362\|Ga0126377_10321691	Not Available	1533	Open in IMG/M
3300010399\|Ga0134127_10221751	All Organisms → cellular organisms → Bacteria → Proteobacteria	1772	Open in IMG/M
3300010400\|Ga0134122_12721699	Not Available	547	Open in IMG/M
3300010401\|Ga0134121_11206405	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300011269\|Ga0137392_10006387	All Organisms → cellular organisms → Bacteria	7536	Open in IMG/M
3300011269\|Ga0137392_10366842	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300011270\|Ga0137391_10009648	All Organisms → cellular organisms → Bacteria	7657	Open in IMG/M
3300012096\|Ga0137389_10118425	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300012202\|Ga0137363_10102447	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300012205\|Ga0137362_10704563	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300012362\|Ga0137361_10351195	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300012685\|Ga0137397_10023701	All Organisms → cellular organisms → Bacteria	4334	Open in IMG/M
3300012685\|Ga0137397_10028360	All Organisms → cellular organisms → Bacteria → Proteobacteria	3973	Open in IMG/M
3300012685\|Ga0137397_10215695	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300012917\|Ga0137395_11049162	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300012918\|Ga0137396_10540380	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300012922\|Ga0137394_10035474	All Organisms → cellular organisms → Bacteria	4074	Open in IMG/M
3300012930\|Ga0137407_10168637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1947	Open in IMG/M
3300014325\|Ga0163163_10237436	All Organisms → cellular organisms → Bacteria	1872	Open in IMG/M
3300014497\|Ga0182008_10753810	Not Available	561	Open in IMG/M
3300014745\|Ga0157377_10529223	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300015052\|Ga0137411_1284483	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300015241\|Ga0137418_10606754	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300017997\|Ga0184610_1129701	Not Available	817	Open in IMG/M
3300018000\|Ga0184604_10270030	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300018028\|Ga0184608_10199859	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300018053\|Ga0184626_10000280	All Organisms → cellular organisms → Bacteria	14792	Open in IMG/M
3300018066\|Ga0184617_1079815	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300018071\|Ga0184618_10180090	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M
3300018071\|Ga0184618_10397962	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300018422\|Ga0190265_10672090	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300018422\|Ga0190265_10897088	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300018429\|Ga0190272_10935435	All Organisms → cellular organisms → Bacteria → Proteobacteria	818	Open in IMG/M
3300018429\|Ga0190272_12550627	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300019789\|Ga0137408_1129723	All Organisms → cellular organisms → Bacteria	1461	Open in IMG/M
3300019789\|Ga0137408_1197438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2188	Open in IMG/M
3300019878\|Ga0193715_1108248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300019882\|Ga0193713_1034812	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300019882\|Ga0193713_1157293	Not Available	606	Open in IMG/M
3300019883\|Ga0193725_1126893	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300020004\|Ga0193755_1014044	All Organisms → cellular organisms → Bacteria	2636	Open in IMG/M
3300020004\|Ga0193755_1154358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	694	Open in IMG/M
3300020021\|Ga0193726_1163899	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300020070\|Ga0206356_10849435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1549	Open in IMG/M
3300020170\|Ga0179594_10191149	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300021073\|Ga0210378_10016959	All Organisms → cellular organisms → Bacteria → Proteobacteria	2968	Open in IMG/M
3300021344\|Ga0193719_10082127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1401	Open in IMG/M
3300021344\|Ga0193719_10206696	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300021432\|Ga0210384_10090397	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300021432\|Ga0210384_11786982	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300021445\|Ga0182009_10000066	All Organisms → cellular organisms → Bacteria	16059	Open in IMG/M
3300022534\|Ga0224452_1012870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2226	Open in IMG/M
3300025885\|Ga0207653_10019448	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300025910\|Ga0207684_10030112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4621	Open in IMG/M
3300025910\|Ga0207684_10211011	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300025910\|Ga0207684_10699597	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300025915\|Ga0207693_10703169	Not Available	783	Open in IMG/M
3300025917\|Ga0207660_10261363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1369	Open in IMG/M
3300025918\|Ga0207662_10028862	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
3300025931\|Ga0207644_10206370	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300025972\|Ga0207668_10284262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1358	Open in IMG/M
3300025972\|Ga0207668_11219083	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300026035\|Ga0207703_11530827	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300026095\|Ga0207676_11969825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	583	Open in IMG/M
3300026285\|Ga0209438_1000107	All Organisms → cellular organisms → Bacteria	21294	Open in IMG/M
3300026285\|Ga0209438_1061912	All Organisms → cellular organisms → Bacteria → Proteobacteria	1230	Open in IMG/M
3300026304\|Ga0209240_1024492	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300026320\|Ga0209131_1006032	All Organisms → cellular organisms → Bacteria	7798	Open in IMG/M
3300026345\|Ga0257148_1020442	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300026351\|Ga0257170_1054850	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300026361\|Ga0257176_1012091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1153	Open in IMG/M
3300026374\|Ga0257146_1001319	All Organisms → cellular organisms → Bacteria → Proteobacteria	4191	Open in IMG/M
3300026489\|Ga0257160_1035589	Not Available	834	Open in IMG/M
3300026508\|Ga0257161_1066621	Not Available	735	Open in IMG/M
3300027787\|Ga0209074_10037690	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300028047\|Ga0209526_10406505	All Organisms → cellular organisms → Bacteria → Proteobacteria	903	Open in IMG/M
3300028673\|Ga0257175_1042964	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300028716\|Ga0307311_10197738	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300028791\|Ga0307290_10204528	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300028819\|Ga0307296_10205324	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300028828\|Ga0307312_10411529	Not Available	889	Open in IMG/M
3300031720\|Ga0307469_10039767	All Organisms → cellular organisms → Bacteria	2843	Open in IMG/M
3300031720\|Ga0307469_10075103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2261	Open in IMG/M
3300031740\|Ga0307468_101279402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	666	Open in IMG/M
3300031820\|Ga0307473_10243842	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300032017\|Ga0310899_10538036	Not Available	578	Open in IMG/M
3300032174\|Ga0307470_10376260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300032180\|Ga0307471_100100983	All Organisms → cellular organisms → Bacteria	2618	Open in IMG/M
3300032180\|Ga0307471_102462628	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300032205\|Ga0307472_100018626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3737	Open in IMG/M
3300032770\|Ga0335085_10744003	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.03%
Host-Associated	Host-Associated	13.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Plants	Host-Associated → Plants	13.97%
Aquatic	Environmental → Aquatic	6.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.56%
Sediment	Environmental → Aquatic → Sediment	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.68%
Freshwater	Environmental → Aquatic → Freshwater	0.74%
Roots	Host-Associated → Plants → Roots	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.09%
Loam	Environmental → Terrestrial → Soil → Loam	19.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.74%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.15%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.15%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.21%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.47%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.47%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.74%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005878	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_03971410	2067725004	Soil	MRKRLPLNPSGRITDVKTFRWVIAGLAMLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDGVISTCLDPGP
GPIPI_03102840	2088090014	Soil	VKTFWWVLAGLAVLVIVLSVEVMGRTRPSPGCTSSVVIARGSHGETVECVCVDGVLATCFHPGP
ICChiseqgaiiDRAFT_20606422	3300000033	Soil	VKTFWWVLAGLAVLVIVLSVEVMGRTRPSPGCTSSVVIARGSHGETVECVCVDGVLATCFHPGP*
F12B_120458034	3300000443	Soil	VVKTFGWILAGLLLLALGLAVHVMGRTRPSRDCTSSVVIARGPHGQPVECVCVDGVIATCFNPGP*
JGI25617J43924_101099011	3300002914	Grasslands Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGA
Ga0062593_1026839952	3300004114	Soil	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0062589_1007739183	3300004156	Soil	MKLFWYVLAGLGLLVIALGVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0063356_1000245084	3300004463	Arabidopsis Thaliana Rhizosphere	MRKRLPLNPSGRITDVKTFRWVIAGLAMLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDRVISTCFDPGP*
Ga0065705_103472513	3300005294	Switchgrass Rhizosphere	MLGWVLTGLLLLVVVLAIQVMGRTRSVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0070687_1000186895	3300005343	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSSVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0070674_1011268391	3300005356	Miscanthus Rhizosphere	MKLFWYVLAGLGLLVIALAVGVEWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0070688_1010669372	3300005365	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCV
Ga0070703_100533272	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VKIFWCVMAGLVLLGGVLALRVTGRPRPSPDCASSVVIVHGPHGEAVECVCIGGTVSTCFDPGP*
Ga0070709_100159333	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKVFWCVMAGLLVLTLLLALRVTGRPRAGADCASSVVIVHGPHGEPVECVCVGGAISTCFAPGP*
Ga0070705_1000407352	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0070694_1010859971	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VKTFWWPLAGLVLLAMVLAAFVMARARPTPDCTSSVVMGRGPHGEPVECVCVGGTISTCFGPGP*
Ga0070694_1014319211	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0070708_1005840242	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIVHRPHGEPIECVCIGGAVSTCFDPGP*
Ga0070708_1014311752	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LEDAVKIFWCVMAGLVLLGGVLALRVTGRPRPSPDCASSVVIVHGPHGEAVECVCIGGTVSTCFDPGP*
Ga0070681_114722241	3300005458	Corn Rhizosphere	MRKRLPLNPSGRITDVKTFRWVIAGLAMLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDGVISTCLDPGP*
Ga0070706_1000311979	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKVFWCVMAGLLVLTLLLALRVTGRPRAAADCTSSVVIVHGPHGEPVECVCVGGAISTCFAPGP*
Ga0070706_1013753161	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAEAPRHLEDAVKIFWCVMAGLVLLGGVLALRVTGRPRPSPDCASSVVIVHGPHGEAVECVCIGGTVSTCFDPGP*
Ga0070698_1001109653	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VKPFWWILTVLVLLVTVLALRVTRTPPSSDCASSVRIVRGPHGEPVECVCVGGTLSTCFDPGP*
Ga0070698_1001793912	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVIIVHRPHGEPIECVCIGGAVSTCFDPGP*
Ga0070698_1003410591	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VKTFWWPLAGLVLLAMVLAVYVMARTRPSPDCTSSVVMGRGPHGEPVECICVGGTISTCFGPGP*
Ga0070741_100131745	3300005529	Surface Soil	MKLFWYMLAGLGLLVIALAVGVARRPPPARDCASSVVITRGPHGGPVECVCVNGAISTCFEPGP*
Ga0070697_1000699502	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VKTFWWPLAGLVLLAMVLAVYVMARTRPSPDCTSSVVMGRGPHGEPVECVCVGGTISTCFGPGP*
Ga0070704_1000310942	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLTWVVTGLVLLAMALAMQVMGRTRSVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0070704_1002076743	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VVKTFGWILAGLLLLALGLAVHVMGRTRPSHDCTSSVVIARGPHGQPVECVCVDGVIATCFNPGP*
Ga0068858_1002356031	3300005842	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHAEPVECVCVNGTVSTCF
Ga0068860_1003154412	3300005843	Switchgrass Rhizosphere	VVKTFGWILAGLLLLALGLAVHVMGRTRPSHDCASSVVIARGPHGQPVECVCVDGVIATCFNPGP*
Ga0075297_10298411	3300005878	Rice Paddy Soil	VTRLLWWWLLTGLALVVTVLAVGVTWRPRSSPDCAGRIVIGRGPHGEPIECVCVGGTISTCFEPGP*
Ga0079222_114851082	3300006755	Agricultural Soil	MKLFWYVLTGLALLVVALAVGVARRPAPGRDCTSSVIIGRGPHGQAVECVCVNGTVSTCFEPGP*
Ga0075433_104766373	3300006852	Populus Rhizosphere	MKVFWCVMAGLLVLTLLLALRVTGRPRAGADCTSSVIMLHGPHGEPVECVCVAGAISTCFAPGP*
Ga0075433_108800603	3300006852	Populus Rhizosphere	VLTLLLALRVTGRPRAAADCTSSVVIVHGPHGEPVECVCVGGAISTCFVPGP*
Ga0075425_1002748091	3300006854	Populus Rhizosphere	VKTFWWVLAGLAVLVIVLSVQVMGRTRPSPGCTSSVVIARGSHGEPVECVCVDGVLATCFHPGP*
Ga0075425_1004492993	3300006854	Populus Rhizosphere	MKVFWCVMAGLVVLTLLLALRVTGRPRAAADCTSSVVIVHGPHGEPVECVCVGGAISTCFVPGP*
Ga0075425_1004663081	3300006854	Populus Rhizosphere	KLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSSVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0075434_1002718691	3300006871	Populus Rhizosphere	VKTFWWVLAGLAVLVIVLSVQVIGRTRPSPGCTSSVVIARGSHGEPVECVCVEGVLATCFHPGP*
Ga0099791_104076392	3300007255	Vadose Zone Soil	VKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0099829_100120416	3300009038	Vadose Zone Soil	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPIECVCVEGVISTCFDPGP*
Ga0099829_103150052	3300009038	Vadose Zone Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP*
Ga0099829_108018551	3300009038	Vadose Zone Soil	VKLFWWILTGLVLLVVVLSMPVLWRTRSSPDCTSNVVIVRGPHGEPAECVCVGGTIATCFDPGP*
Ga0099827_108921012	3300009090	Vadose Zone Soil	MLAWVVMGLVLLAMALAMQVMGRTRAVPGCTSSVVIGHGPRGEPVECVCVEGVISTCFDPGP*
Ga0114129_1000947120	3300009147	Populus Rhizosphere	MLGWVLTGLALLVVVLGIQVMGRPRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0126377_103216914	3300010362	Tropical Forest Soil	MKIFWYVLAGLGLLVIALAVGVAWRPAPSRDCASSVVIGRGPHGEAVECVCVNGTVSTCFEPGP*
Ga0134127_102217515	3300010399	Terrestrial Soil	VAPVVAMRKRLPLNPSGRITDVKTFRWVIAGLAMLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDGVISTCLDPGP*
Ga0134122_127216991	3300010400	Terrestrial Soil	VKTFWWVLAGLAILVGALAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDGVISTCFDPGP*
Ga0134121_112064052	3300010401	Terrestrial Soil	VKIFWCVMAGLILLVGALALRVTGRPRPSPDCASSVVIVPGPHGQPVECVCIGGTVSTCFDPGP*
Ga0137392_100063878	3300011269	Vadose Zone Soil	VRLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP*
Ga0137392_103668421	3300011269	Vadose Zone Soil	PTSWPSSGLSEDAVKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0137391_100096488	3300011270	Vadose Zone Soil	MAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP*
Ga0137389_101184251	3300012096	Vadose Zone Soil	LCEDAVKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP*
Ga0137363_101024472	3300012202	Vadose Zone Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPFECVCIGGAVSTCFDPGP*
Ga0137362_107045633	3300012205	Vadose Zone Soil	VKLFWCVMAGLVLLVGALALRVTGRPRPSPDCASSVVIGRGPHGEPFECVCIGGAVSTCFDPGP*
Ga0137361_103511952	3300012362	Vadose Zone Soil	VKLFWCVMAGLVLLVGALALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0137397_100237017	3300012685	Vadose Zone Soil	MKTLGWVLTGLVLLVVVLAMQVMGRTRSMSGCTSSVVICRGPRGEPVECICVEGVVSTCFDSGP*
Ga0137397_100283608	3300012685	Vadose Zone Soil	VKILGWVLAGLLLLVMVLAMQVMGRSRAVPGCTSSVVTGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0137397_102156955	3300012685	Vadose Zone Soil	WPSSGLCEDAVKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0137395_110491621	3300012917	Vadose Zone Soil	MKPFWWILTGLVLLVVVLSVPVMWPPRPSPDCTSNVVIVRGPHGEAAECVCVGGTTSTCFNPDP*
Ga0137396_105403803	3300012918	Vadose Zone Soil	LLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP*
Ga0137394_100354747	3300012922	Vadose Zone Soil	MKTLGWVLTGLVLLVVVLAMQVMGRTRSMSGCTSSVVIGKGPRGEPVECVCVEGVVSTCFDPGP*
Ga0137407_101686372	3300012930	Vadose Zone Soil	VKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFEPGP*
Ga0163163_102374361	3300014325	Switchgrass Rhizosphere	GLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNWTVSTCFEPGP*
Ga0182008_107538101	3300014497	Rhizosphere	MKLFWYVLAGLGLLVIALGVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGMVLTCFEPGP*
Ga0157377_105292231	3300014745	Miscanthus Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSCDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP*
Ga0137411_12844831	3300015052	Vadose Zone Soil	ILGWVLGGLLLLVMVLAMQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP*
Ga0137418_106067543	3300015241	Vadose Zone Soil	LVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP*
Ga0184610_11297012	3300017997	Groundwater Sediment	LAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPNGEPVECVCVEGVISTCFDPGP
Ga0184604_102700302	3300018000	Groundwater Sediment	VKILGWVLGGLLLLVMVLAMQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0184608_101998592	3300018028	Groundwater Sediment	VKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0184626_100002809	3300018053	Groundwater Sediment	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0184617_10798151	3300018066	Groundwater Sediment	ERASRIEDGSGRGEEGPRGLPPGPLVPVRMLGWVLTGLLLLVVVLAIQVMGRPRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0184618_101800902	3300018071	Groundwater Sediment	VKILGWVLGGLLLLVMVLAMQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVAGVISTCFDPGP
Ga0184618_103979622	3300018071	Groundwater Sediment	VKTFWWPLAGLVLLAMVLAVYVMARTRPSPDCTSSVVMGRGPHGEPVECVCVGGTISTCFGPGP
Ga0190265_106720902	3300018422	Soil	VKTLWWVLAGLGLLVLVLAMQVMGRTRSVPGCSSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0190265_108970882	3300018422	Soil	VKPFWWILTGLVLLVIVLSVPVMWWTQASPDCTSTVVIVRGPHGEPVECVCVGGTLSTCFDPGP
Ga0190272_109354352	3300018429	Soil	VKTFWWVLAGLAVLVVVLAVQVMGRTHPSPGCTSSVVIGRGPNGEPIECVCVEGVISTCFDPGP
Ga0190272_125506272	3300018429	Soil	VKTFWWVLAGLAFLGVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPVECICVDGVVATCFHPGP
Ga0137408_11297231	3300019789	Vadose Zone Soil	GPLSPVKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFEPGP
Ga0137408_11974382	3300019789	Vadose Zone Soil	VKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFEPGP
Ga0193715_11082482	3300019878	Soil	GLSPGPLSPVKILGWVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0193713_10348122	3300019882	Soil	MKTLGWVLTGLVLLVMVLAMQVMGRTRPVPGCTSTVVIGQGPRGEPVECVCVEGVVSTCFDPGP
Ga0193713_11572932	3300019882	Soil	VKIFWCVMAGLVLMVGVLALRVTGRPRPSPDCASSVVIVHGPHGEPVECVCIGGTVSTCFDPGP
Ga0193725_11268932	3300019883	Soil	TFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPIECVCVEGVISTCFDPGP
Ga0193755_10140443	3300020004	Soil	VKTFWWPLAGLVLLAMVLAVYVMARTRPSPDCTSSVVMGRGPHGEPVECVCIGGTISTCFGPGP
Ga0193755_11543582	3300020004	Soil	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPIECVCVEGVISTCFDPGP
Ga0193726_11638992	3300020021	Soil	MKIFWFVMAGLIVLTGVLALRVTGRPRPSADCASSVVIVQGPHGQPVECVCIGGTVSTCFDPGP
Ga0206356_108494355	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0179594_101911493	3300020170	Vadose Zone Soil	LSPVKILGWVLAGLLLLVMVLAMQVMGRSRAVPGCTSSVVTGRGPHGEPVECVCVEGVISTCFDPGP
Ga0210378_100169593	3300021073	Groundwater Sediment	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPQGEPIECVCVEGVISTCFDPGP
Ga0193719_100821273	3300021344	Soil	MKTLGWVLTGLVLLVMVLAMQVMGRTRPVHGCTSTVVIGQGPRGEPVECVCVEGVVSTCFDPGP
Ga0193719_102066961	3300021344	Soil	ALLVGVLGVQVMGRTRPSAGCTSSVVIVRGPHGEPVECVCFDGVVSTCFHPGP
Ga0210384_100903973	3300021432	Soil	VKSFWWILTGLVLLVVVLSVPVMWRPRPSRDCTSNVVIVRGPHSEPVECVCVGGTVSTCFDPGP
Ga0210384_117869821	3300021432	Soil	VKLFWCVMAGLVLLVGALALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFEPGP
Ga0182009_1000006615	3300021445	Soil	MKLFWYVLAGLGLLVIALGVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0224452_10128702	3300022534	Groundwater Sediment	VKTFWWLLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPGGEPVECVCVEGVISTCFDPGP
Ga0207653_100194483	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VKIFWCVMAGLVLLGGVLALRVTGRPRPSPDCASSVVIVHGPHGEAVECVCIGGTVSTCFDPGP
Ga0207684_100301122	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP
Ga0207684_102110112	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIVHRPHGEPIECVCIGGAVSTCFDPGP
Ga0207684_106995972	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKVFWCVMAGLLVLTLLLALRVTGRPRAAADCTSSVVIVHGPHGEPVECVCVGGAISTCFAPGP
Ga0207693_107031691	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKVFWCVMAGLLVLTLLLALRVTGRPRAGADCASSVVIVHGPHGEPVECVCVGGAISTC
Ga0207660_102613633	3300025917	Corn Rhizosphere	MRKRLPLNPSGRITDVKTFRWVIAGLAMLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGAPVECVCVDRVISTCFDPGP
Ga0207662_100288625	3300025918	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSSVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0207644_102063705	3300025931	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALALGVAWRPAPSRDCTSSVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0207668_102842624	3300025972	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALGVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCF
Ga0207668_112190833	3300025972	Switchgrass Rhizosphere	GLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0207703_115308271	3300026035	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTAIIGRGPHGEPVECVCVNGTVSTCF
Ga0207676_119698252	3300026095	Switchgrass Rhizosphere	MKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCF
Ga0209438_100010718	3300026285	Grasslands Soil	MKTLGWVLTGLVLLVVVLAMQVMGRTRSMSGCTSSVVIGRGPRGEPVECVCVEGVVSTCFDSGP
Ga0209438_10619123	3300026285	Grasslands Soil	VKILGWVLGGLLLLVMVLAMQVMGRSRAVPGCTSSVVIGRGLHGEPVECVCVEGVISTCFDPGP
Ga0209240_10244925	3300026304	Grasslands Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIAHGPHGEPIECVCIGGAVSTCFDPGP
Ga0209131_10060329	3300026320	Grasslands Soil	MKTLGWVLTGLVLLVVVLAMQVMGRTRSMSGCTSSVVIGKGPRGEPVECVCVEGVVSTCFDPGP
Ga0257148_10204422	3300026345	Soil	FWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPG
Ga0257170_10548502	3300026351	Soil	VKTFWWVLAGLAVLVVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPIECVCVEGVISTCF
Ga0257176_10120911	3300026361	Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCF
Ga0257146_10013198	3300026374	Soil	VKLFWCVMAGLVLLVSVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP
Ga0257160_10355892	3300026489	Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECMCIGGAVSTCFDPGP
Ga0257161_10666212	3300026508	Soil	VKIFWCVMAGLILLTGVLALRVTGRPRPSPDCASSVVIVPGPHGQPVECVCIGGTVSTCFDPGP
Ga0209074_100376904	3300027787	Agricultural Soil	SMKLFWYVLAGLGLLVIALAVGVAWRPAPSRDCTSTVIIGRGPHGEPVECVCVNGTVSTCFEPGP
Ga0209526_104065052	3300028047	Forest Soil	VKIFWFVMAGLILMVGVLALRVTGRPRPSADCTSSVIIAPGPHGRPVECVCIGGTVSTCFDPGP
Ga0257175_10429641	3300028673	Soil	PTSWPSCGLSEDAVKLFWCVMAGLVLLVGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP
Ga0307311_101977382	3300028716	Soil	WVLGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0307290_102045281	3300028791	Soil	LGGLLLLVMVLAIQVMGRSRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0307296_102053242	3300028819	Soil	VKILGWVLGGLLLLVVVLAIQVMGRPRAVPGCTSSVVIGRGPHGEPVECVCVEGVISTCFDPGP
Ga0307312_104115292	3300028828	Soil	VWTVKTFWWVLAGLALLVGVLGVQVMGRTRPSAGCTSSVVIVRGPHGEPVECVCFDGVVSTCFHPGP
Ga0307469_100397677	3300031720	Hardwood Forest Soil	PRSDAWPRPRASSPRAILEDAVKIFWCVMAGLVLLGGVLALRVTGRPRPSPDCASSVVIVHGPHGEAVECVCIGGTVSTCFDPGP
Ga0307469_100751035	3300031720	Hardwood Forest Soil	MKTLGWVLTGLVLLVMVLGMQVMGRTRPVPGCTSSVVIGQGPRGEPVECVCVEGVVSTCFDPGP
Ga0307468_1012794022	3300031740	Hardwood Forest Soil	VKPLAWVLTGLVLLVLVLAMQVMGRTRALPGCTSSVVIGHGPRGEPVECVCVEGVVSTCFDPGP
Ga0307473_102438423	3300031820	Hardwood Forest Soil	VKLFWCVMAGLVLLVGVLALRVTGRPRPSLDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP
Ga0310899_105380361	3300032017	Soil	VVKTFGWILAGLLLVALGLAVHVMGRTRPSRDCTSSVVIARGPHGQPVECVCVDGVIATCFNPGP
Ga0307470_103762604	3300032174	Hardwood Forest Soil	VKTLAWVLTGLVLLVMVLAMQVMGRTRALPGCTSSVVIGHGPRGEPVECVCVEGVVSTCFDPGP
Ga0307471_1001009833	3300032180	Hardwood Forest Soil	VKTLAWVLTGLVLLVMVLAMQVMGRTRPLPGCTSSVVIGHGPRGELVECVCVEGVVSTCFDPGP
Ga0307471_1024626281	3300032180	Hardwood Forest Soil	VKTFWWVLAGLAMLAVVLAVQVMGRTRPSPGCTSSVVIGRGPHGEPVECVCVDGVVSTCFEPGP
Ga0307472_1000186268	3300032205	Hardwood Forest Soil	VKLFWCVMAGLVLLMGVLALRVTGRPRPSPDCASSVVIGRGPHGEPVECVCIGGAVSTCFDPGP
Ga0335085_107440032	3300032770	Soil	MKPFWWTLTGLALLVMVLAVPVMWRTRPSPDCTSNVVIVRGPHGEPAECVCVGGALSTCFDPGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences