Metagenome / Metatranscriptome Family F057482

Basic Information
Family ID	F057482
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	54 residues
Representative Sequence	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPS
Number of Associated Samples	108
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.48 %
% of genes near scaffold ends (potentially truncated)	13.97 %
% of genes from short scaffolds (< 2000 bps)	15.44 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Unclassified (97.794 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (22.794 % of family members)
Environment Ontology (ENVO)	Unclassified (21.324 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.588 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.84% β-sheet: 0.00% Coil/Unstructured: 44.16%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF06897	DUF1269	11.76
PF00211	Guanylate_cyc	2.21
PF00296	Bac_luciferase	0.74
PF00581	Rhodanese	0.74
PF14104	DUF4277	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG4803	Uncharacterized membrane protein	Function unknown [S]	11.76
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.21
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.74

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.79 %
All Organisms	root	All Organisms	2.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.79 %
cellular organisms	root	All Organisms → cellular organisms	2.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.79 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.47 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11582321	Not Available	973	Open in IMG/M
3300004803\|Ga0058862_11178881	Not Available	545	Open in IMG/M
3300005093\|Ga0062594_100362331	Not Available	1146	Open in IMG/M
3300005294\|Ga0065705_10201747	Not Available	1418	Open in IMG/M
3300005332\|Ga0066388_105054442	Not Available	670	Open in IMG/M
3300005445\|Ga0070708_100653191	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	991	Open in IMG/M
3300006844\|Ga0075428_101901730	Not Available	618	Open in IMG/M
3300006871\|Ga0075434_100643475	Not Available	1079	Open in IMG/M
3300010043\|Ga0126380_10776189	Not Available	781	Open in IMG/M
3300010046\|Ga0126384_11341617	Not Available	665	Open in IMG/M
3300010047\|Ga0126382_10325139	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1166	Open in IMG/M
3300010127\|Ga0127489_1003007	Not Available	523	Open in IMG/M
3300010130\|Ga0127493_1060525	Not Available	504	Open in IMG/M
3300010366\|Ga0126379_12325201	Not Available	636	Open in IMG/M
3300012948\|Ga0126375_10373297	Not Available	1021	Open in IMG/M
3300026118\|Ga0207675_100439427	Not Available	1291	Open in IMG/M
3300026118\|Ga0207675_102433408	Not Available	535	Open in IMG/M
3300027873\|Ga0209814_10095185	Not Available	1261	Open in IMG/M
3300027873\|Ga0209814_10359808	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300031912\|Ga0306921_10473647	Not Available	1458	Open in IMG/M
3300032059\|Ga0318533_11435537	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.38%
Host-Associated	Host-Associated	31.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.65%
Plants	Host-Associated → Plants	30.88%
Aquatic	Environmental → Aquatic	0.74%
Human	Host-Associated → Human	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.62%
Sediment	Environmental → Aquatic → Sediment	0.74%
Digestive System	Host-Associated → Human → Digestive System	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.26%
Loam	Environmental → Terrestrial → Soil → Loam	11.03%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.74%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.74%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.74%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	22.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.47%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.74%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010071	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010079	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010111	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010120	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010123	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010127	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030552	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030634	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030917	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034673	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_115823212	3300000890	Soil	MRHYYVAQAMVGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITG
Ga0062592_1007070901	3300004480	Soil	MRQHYVSKAMVGGLLGTLLQTIVVYGVAPMLAGQAMDVATLLER
Ga0062592_1018345272	3300004480	Soil	MEGDPMRPDDVAKAMGGGLLGTLVQTIMVYGLAPLIAGQSTDVAALTGH
Ga0066395_106067571	3300004633	Tropical Forest Soil	MRPQYVAKAIVGGLLGTLLQTIMVYGVAPVMAGQSMDIAAM
Ga0058862_111788811	3300004803	Host-Associated	MRQHYVAKAMVGGLLGTLLQTIMVYGVAPIMAGQSVDAAAMLEHSCA
Ga0062594_1003623311	3300005093	Soil	MRPDDVAKAMGGGLLGTLVQTIMVYGLAPLIAGQSTDVAALTGHADAPSLLAHLLSGSVLFPLGY
Ga0066679_104874661	3300005176	Soil	MRQYYVAKAMGGGLLGTLLQTIMVYGVAPMLAGQSMDVAAITGHACA
Ga0065704_100630262	3300005289	Switchgrass Rhizosphere	MQQHFVAKAMIGGLLGTLLQTIAVYGVSPIMTGDAMHVAILLERSCTPDMLAHLLSGGV
Ga0065704_106814732	3300005289	Switchgrass Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVIFPLG
Ga0065705_102017471	3300005294	Switchgrass Rhizosphere	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGA
Ga0065705_105735031	3300005294	Switchgrass Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVIFP
Ga0065705_109783272	3300005294	Switchgrass Rhizosphere	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSV
Ga0066388_1017717233	3300005332	Tropical Forest Soil	MRHYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDVVAITG
Ga0066388_1022578422	3300005332	Tropical Forest Soil	MRQHYVAKAMVGGLLGTLLQTIMVYGVAPMMAGPPMNVAAMLGASCAPGMLVHLLSGGVIFP
Ga0066388_1037610043	3300005332	Tropical Forest Soil	MGREHMRQYYVAKAMGGGLLGTLLQTIMVYSVAPMLAGQSMDVAAITGHACAPSLLAHL
Ga0066388_1050544423	3300005332	Tropical Forest Soil	MRQHYVAKAMVGGLLGTVLQTIMVYGVIPMMAGQSIDGAVLLEHFCAPGMLV
Ga0070691_109145541	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVH
Ga0070705_1012075161	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGQSMDVAAITG
Ga0070708_1006531913	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRQHYVAKAMVGGLLGTLLQTIMVYGVAPIMAGQSVDVAAVLEH
Ga0070695_1009592131	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHAC
Ga0070696_1014635691	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTLMVYGVAPLIAGPSMAGAA
Ga0068859_1015902332	3300005617	Switchgrass Rhizosphere	MQPYDVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHACAPSLLAHLLSG
Ga0066903_1034831351	3300005764	Tropical Forest Soil	MRQYYVAKAMVGGLLGTLLQTIMVYGVAPMLAGQSMDVAA
Ga0066903_1042226083	3300005764	Tropical Forest Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLL
Ga0066903_1062853293	3300005764	Tropical Forest Soil	MRPYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHAC
Ga0066903_1082800501	3300005764	Tropical Forest Soil	MRQHYAAKAMVGGLLGTLLQTIMVYGVAPMMVGQSMDIAAILRPSCAPGMLVHLLSGGVIFP
Ga0075417_100529091	3300006049	Populus Rhizosphere	MRPYDVAKAMGGGLVGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGY
Ga0075432_105517932	3300006058	Populus Rhizosphere	MRPYDVAKAMGGGLVGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGYVWLSSRAF
Ga0075422_104233301	3300006196	Populus Rhizosphere	MRQYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDGVAITGHPCAPSLLAHLLSGSVIFPL
Ga0066660_104262443	3300006800	Soil	MRQYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHACAPSLLARLL
Ga0075428_1012228441	3300006844	Populus Rhizosphere	MRPYDVAMAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACA
Ga0075428_1019017301	3300006844	Populus Rhizosphere	MRQHYVAKAMVGGLLGTVLQTIMVYGVIPMMAGQSIDGAVLQEYFCAPSMLVHLLS
Ga0075428_1020188581	3300006844	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACA
Ga0075421_1011550631	3300006845	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSG
Ga0075430_1007553813	3300006846	Populus Rhizosphere	MRPYDVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDGVAITGH
Ga0075431_1016357032	3300006847	Populus Rhizosphere	MRPYDVAKAMVGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAP
Ga0075433_104043421	3300006852	Populus Rhizosphere	MRPYDVAKAMGGGLVGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFP
Ga0075420_1012954001	3300006853	Populus Rhizosphere	MRQYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDGAAITGHACAPSLLAHLLSGSVIFPLGYVW
Ga0075425_1017631592	3300006854	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGYV
Ga0075434_1006434753	3300006871	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTLMVYGVAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGYVWLSS
Ga0075429_1009151161	3300006880	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLL
Ga0075429_1013165542	3300006880	Populus Rhizosphere	MRHHDVAKAMGGGLLGTLLQTLMVYGVVPLLAGQSITVAVLREHACAPGLLAHLLSGGVLFPLGYLW
Ga0075424_1019022561	3300006904	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAIT
Ga0075436_1006060752	3300006914	Populus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVIFPL
Ga0099828_101666231	3300009089	Vadose Zone Soil	MRQHYVAKAMVGGLLGTLLQTIMVYGMAPMIAGQSMDMA
Ga0111539_106889753	3300009094	Populus Rhizosphere	MRQYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDGVAITGHPCAPSLL
Ga0111539_133823992	3300009094	Populus Rhizosphere	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLL
Ga0075418_109717021	3300009100	Populus Rhizosphere	MEREPMRPYDVAKAMGGGLVGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGYVWL
Ga0075418_125169892	3300009100	Populus Rhizosphere	MEGEHMQQHYVTKAMVGGLLGTLLQTITVYGVAPMMAGQ
Ga0114129_113385641	3300009147	Populus Rhizosphere	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVH
Ga0114129_114234801	3300009147	Populus Rhizosphere	MEGEQMRPSDVAKAMGGGLLGTLVQTIMVYGVAPLLAGPSMAGAAITGHACAPSLLVH
Ga0111538_106489801	3300009156	Populus Rhizosphere	MEGDPMRPDDVAKAMGGGLLGTLVQTIMVYGLAPLIAGQSTDVAALTGHADAPSLLTHLLSGSVLFPLGYVWLSSRA
Ga0111538_117944191	3300009156	Populus Rhizosphere	MGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSL
Ga0111538_121629003	3300009156	Populus Rhizosphere	MRPYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMD
Ga0111538_131815862	3300009156	Populus Rhizosphere	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGH
Ga0075423_107787931	3300009162	Populus Rhizosphere	MEGEHMRPYNVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHTCAPSLLAHLLSGSVIFPLGY
Ga0126374_112694012	3300009792	Tropical Forest Soil	MRHYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGPSMDVVAITGHACAPSLLAHL
Ga0126374_113901101	3300009792	Tropical Forest Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAIMGHACAPSLLVHLLSGSVLFPLGYVW
Ga0126374_117048152	3300009792	Tropical Forest Soil	MRPSDVAKAMGGGLLGTLVQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVLFPLGYVWLS
Ga0126380_107761893	3300010043	Tropical Forest Soil	MQQHDVAKAMGGGLLGTVLQTIVVYGVIPMLAGQS
Ga0126384_104987601	3300010046	Tropical Forest Soil	MRPYYVAKAMVGGLLGTLLQTLMIYGVAPMIAGHSIDVAAITGHACAPSLLAHLLSGSVIFPLG
Ga0126384_113416171	3300010046	Tropical Forest Soil	MVGGLLGTVLQTIMVYGVIPMMAGQSIDGAVLLEHFCAPGMLVHLLSGG*
Ga0126382_103251391	3300010047	Tropical Forest Soil	MEEEHMRQHYVAKAMVGGLLGTVLQTIMVYGVIPMMAGQSIDGAVLLEHF
Ga0127477_1411521	3300010071	Grasslands Soil	MRQHYVAKAMVGGLLGTLLQTITVYGVAPMMAGQSMDMGGLLEHFYAP
Ga0127436_1226162	3300010079	Grasslands Soil	MRQHDVAKAMVGGLLGTLLQTIMVYGVAPVMAGHAMNMAVL
Ga0127501_11081651	3300010097	Grasslands Soil	MEREHMRQYYVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLL
Ga0127491_10320361	3300010111	Grasslands Soil	MRQHDVAKAMVGGLLGTLLQTIMVYGVAPIMAGQSMDVGGLLEHFCAPGMLAHLLSG
Ga0127451_10576301	3300010120	Grasslands Soil	MEGEHMRQHYVAKAMVGGLLGTLLQTIMVYGVAPMMAGQSINGAALLEHFCA
Ga0127479_11738151	3300010123	Grasslands Soil	MRQHDVAKAMVGGLLGTLLQTIMVYGVAPIMAGQFMDVGGLLEHFCAPGMLAHLLSGGGDLPAGVYIAI
Ga0127489_10030071	3300010127	Grasslands Soil	MRQHYVAKAMVGGLLGTLLQTIMVYGVAPMMAGHSVNVAVLLEHS
Ga0127493_10605251	3300010130	Grasslands Soil	MEGEHMRQHYVAKAMVGGLLGTLLQTLMVYGVAPVMAGHALNMAVLLERSCAPGLLAHLLSGGV
Ga0127464_10403021	3300010139	Grasslands Soil	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVPLLSGSVLFP
Ga0127456_11314503	3300010140	Grasslands Soil	MRQYYVAKAMGGGLLGTLLQTIMVYGVAPMITGQSMDVAAITGHACA
Ga0127483_11230311	3300010142	Grasslands Soil	MEGEHMRQHYVAKAMVGGLLGTLLQTITVYGVAPMIAGQSIDGAVL
Ga0126370_107466281	3300010358	Tropical Forest Soil	MRPYYVAKAMVGGLLGTLLQTIMVYGVAPMITGQSMDVVAITGHACAPS
Ga0126376_110275832	3300010359	Tropical Forest Soil	MRPYDVAKAMGGGLLGTLLQTLMVYGVAPLIAGPSMAGAAITGHACAPSLLGHLLSGSVLFPLGYVWLS
Ga0126376_112377153	3300010359	Tropical Forest Soil	MEREHMRPYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQAMDVAAITRHACAPSLLVH
Ga0126377_126534921	3300010362	Tropical Forest Soil	MEGEHMRPYYVAKAMGGGLLGALLQTIMVYGVAPMIAGQSMDIAAITGHACAPSLLARLLSGSVIFPLGY
Ga0126379_123252011	3300010366	Tropical Forest Soil	MEGEHMRQHNVAKAMVGGLLGTLLQTITVYGVAPMMAGQSMDVVALLEH
Ga0134128_113783571	3300010373	Terrestrial Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVLFPLGY
Ga0126383_116162192	3300010398	Tropical Forest Soil	MVGGLLGTLLQTITVYSVAPMMAGQPMDVAALLEHFCA
Ga0137327_11398571	3300012173	Soil	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMVGAAITGHACAPS
Ga0137363_109363781	3300012202	Vadose Zone Soil	MVGGLLGTLLQPIMVYGVAPIMAGQSMDMGGLLEHFYAPGMLAHLLSGGVIFPLGY
Ga0137380_116423561	3300012206	Vadose Zone Soil	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGVAITGHACTP
Ga0137387_110043322	3300012349	Vadose Zone Soil	MEGKYMQQHYVAKAMVGGLLGTLLQTLMVYGVAPVMAGH
Ga0137386_106276391	3300012351	Vadose Zone Soil	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVIFPLGYVWLS
Ga0137371_101367461	3300012356	Vadose Zone Soil	MEREHMRQYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHACAPSLLARLL
Ga0137360_105286482	3300012361	Vadose Zone Soil	MRPHDVATAMVGGLLGTLLQTIMVYGVAPVMAGQSRN
Ga0134035_10058852	3300012391	Grasslands Soil	MRQHYVAKAIVGGLLGTLLQTITVYGVAPMMAGQSMDMGGLL
Ga0134052_10235441	3300012393	Grasslands Soil	MEREHMRQYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAI
Ga0134061_10456202	3300012399	Grasslands Soil	MRQHYVTKAMVGGLLGTLLQTIMVYGVAPMMAGQPINVAVLLEHSCAPG
Ga0134055_13807093	3300012401	Grasslands Soil	MRQYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHACAPSLL
Ga0137397_105686282	3300012685	Vadose Zone Soil	MRGRKNMEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGQSMAGAAITGHACAPSLLVHLLSGSVIF
Ga0137397_109383102	3300012685	Vadose Zone Soil	MRYHDVAKVMGGGLLGTLLQTLMVYGVVPVLAGQSITVAVLREHACAPGLLAHLLSGGVLFPLG
Ga0137359_114309421	3300012923	Vadose Zone Soil	MEGEHMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACA
Ga0126375_103732971	3300012948	Tropical Forest Soil	MEGEHMRQHYVAKAMVGGLLGTLLQTITVYGVAPMMAGQSMDVAALLEHFYAPSMLVHLLSG
Ga0126375_112953982	3300012948	Tropical Forest Soil	MEGEPMRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMA
Ga0126369_128727781	3300012971	Tropical Forest Soil	MRQHYAAKAMVGGLLGTLLQTIMVYGVAPMMVGQSMDIAAILRPS
Ga0163162_110434191	3300013306	Switchgrass Rhizosphere	MEGEHMRQHYVAKAMVGGLLGTLLQTIMVYGVAPMMAGQSMNVAAMLGSSCAPGML
Ga0134075_102437391	3300014154	Grasslands Soil	MRQYYVAKAMGGGLLGMLLQTIMVYGVAPMIAGQSM
Ga0179585_10939161	3300021307	Vadose Zone Soil	MQQHYVAKAMVGGLLGTLLQTLMVYGVAPVMAGHAMNVE
Ga0207643_102539871	3300025908	Miscanthus Rhizosphere	MRPDDVAKAMGGGLLGTLVQTIMVYGLAPLIAGQSTDVAALTGHADAPSL
Ga0207686_117058431	3300025934	Miscanthus Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLS
Ga0207689_115400391	3300025942	Miscanthus Rhizosphere	MRPDDVAKAMGGGLLGTLVQTIMVYGLAPLIAGQSTDVAALTGHADAPSLLAHLLSGSVLFPLGYVWLS
Ga0207703_119660471	3300026035	Switchgrass Rhizosphere	MRHYYVAQAIVGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLAHLLSGSVIFPLG
Ga0207675_1004394271	3300026118	Switchgrass Rhizosphere	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIARPSMAGAAITGHACAPSLLVHLLSGSVIFPLG
Ga0207675_1024334081	3300026118	Switchgrass Rhizosphere	MRQHYVAKAMVGGLLGTVLQTIMVYGVIPMMAGQSIDGAVLQEHF
Ga0209180_102235181	3300027846	Vadose Zone Soil	MRQHYVAKAMVGGLLGTLLQTIMVYGMAPMMAGQSMDVAA
Ga0209814_100951851	3300027873	Populus Rhizosphere	MRPYDVAKAMGGGLVGTLLQTIMVYGAAPLIAGPSMAGAALTGHACAPSLLVHLLSGSVLFPLGYVGCRPEPSLDH
Ga0209814_103598083	3300027873	Populus Rhizosphere	MRPYYVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDIAAITGHACAPS
Ga0209465_106454371	3300027874	Tropical Forest Soil	MRQSYVAKTMVGGLLGTLLQTIMVYGVAPMIAGQSMDVAAITGHA
Ga0209382_111326921	3300027909	Populus Rhizosphere	MRPYDVAMAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSL
Ga0247824_110270122	3300028809	Soil	MRQHVVAKAMIGGLLGTLLQTIAVYGVSPIMTGDAMHVAILLERSCTPDMLAHLLSGGVI
Ga0247827_111587111	3300028889	Soil	MRPYDVAKAMVGGLLGTLLQTIMVYGVAPMIAGQSMDGVAITGHA
Ga0247654_11351121	3300030552	Soil	MRPDDVAKAMGGGLLGTLVQTSMVYGVAPLIAGQSMDVAALTGHADASSLLAHLLSGSVLFPL
Ga0247636_103338402	3300030634	Soil	MRPYDVAKAMGGGLLGTLLQTIMIYGVAPLIAGPAMAGAAITGHACAPS
Ga0075382_116392082	3300030917	Soil	MRPDDVAKAMGGGLLGTLVQTIMVYGVAPLITGPSLAGAAITGHACAPSLLVHLLSGSVLFPLGYVWLS
Ga0073996_108312511	3300030998	Soil	MQQHYVAKAMVGGLLGTLLQTLMVYGVAPVMAGHAMNVEVLLEHSCAPGMLAHLLSEEEKNKEK
Ga0310887_107183142	3300031547	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSV
Ga0306923_120497571	3300031910	Soil	MRLYYVTKAMVGGLLGTLLQTIMVYGVSPMIAGQSMDVAAITG
Ga0306921_104736471	3300031912	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGAAPLIAGPSMAGAALTG
Ga0306922_121017761	3300032001	Soil	MRQHYVAKAMVGGLLGTLLQTLMVYGVAPMMAGQSIDGAVLLEHFCAPGMLAHLLSGGVI
Ga0307416_1010993083	3300032002	Rhizosphere	NMEGEHMRLYDVAKAMVGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHAQTSP
Ga0318533_114355373	3300032059	Soil	MRQYYVAKAMGGGLLGTLLQTIMVYGVAPMIAGQSMD
Ga0306924_112923561	3300032076	Soil	MRPYDVAKAMGGGLLGTLLQTLMVYGVAPLIAGPSMAGAAI
Ga0310895_101716792	3300032122	Soil	MRHNSVAKAIVGGLLGTLLQTIMVYGVAPMMAGQSMNVAAMLGHSCAPGILVHLLSGG
Ga0307472_1025353981	3300032205	Hardwood Forest Soil	MRPSDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAALTGHACAPSLLVHL
Ga0370548_039868_209_451	3300034644	Soil	MEGEHMRPYDVAKAMGGGLLGALLQTIMVYGVAPLIAGPSMAGVAITGHACTPSLLVHLLSGSVIFPLGGCPRKPQMSSR
Ga0314781_106456_2_202	3300034660	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSTAGAAITGHACAPSLLVHLLSGSVIFPLGYIW
Ga0314781_147478_3_161	3300034660	Soil	MRPSDVAKAMGGGLLGTLVQTIIVYGVAPLLAGPSMAGAAITGHACAPSLLVH
Ga0314782_133882_1_219	3300034661	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGSVIFPLGYVWLSSRAF
Ga0314786_124666_1_207	3300034664	Soil	MRLYDMAKAMGGGLLGTLLQTIMVYGVAPLIAGPSTAGAAITGHACAPSLLAHLLSGSVIFPLGYVWLS
Ga0314792_253787_1_147	3300034667	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPS
Ga0314795_130809_372_527	3300034670	Soil	MRPYDMAKAMGGGLLGTLLQTIMVYGVAPLIAGPSTAGAAITGHACAPSLLV
Ga0314797_146361_2_202	3300034672	Soil	MRPYDMAKAMGGGLLGTLLQTIMVYGVAPLIAGPSTAGAAITGHACAPSLLVHLLSGSVIFPLGYIW
Ga0314798_142976_1_174	3300034673	Soil	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIAGPSMAGAAITGHACAPSLLVHLLSGS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign