Metagenome / Metatranscriptome Family F057640

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057640
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	55 residues
Representative Sequence	MFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTLAENEEWMAVHLDK
Number of Associated Samples	115
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.62 %
% of genes near scaffold ends (potentially truncated)	81.62 %
% of genes from short scaffolds (< 2000 bps)	91.91 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.206 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.382 % of family members)
Environment Ontology (ENVO)	Unclassified (27.941 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.294 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.88% β-sheet: 0.00% Coil/Unstructured: 45.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d3t9ja_	3t9j	0.87455
a.25.1.0: automated matches	d4a25a_	4a25	0.86346
a.25.1.9: Rv2844-like	d2ib0a1	2ib0	0.85834
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.8558
a.24.22.1: Nickel-containing superoxide dismutase, NiSOD	d1t6ua_	1t6u	0.85228

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF13439	Glyco_transf_4	3.68
PF00166	Cpn10	1.47
PF00872	Transposase_mut	1.47
PF13545	HTH_Crp_2	0.74
PF08379	Bact_transglu_N	0.74
PF07452	CHRD	0.74
PF13701	DDE_Tnp_1_4	0.74
PF00534	Glycos_transf_1	0.74
PF12706	Lactamase_B_2	0.74
PF09361	Phasin_2	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	1.47
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.47
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.21 %
Unclassified	root	N/A	22.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.21 %
Unclassified	root	N/A	22.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.21 %
Unclassified	root	N/A	22.79 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.59 %
Unclassified	root	N/A	22.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.85 %
Unclassified	root	N/A	22.79 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	58.82 %
Unclassified	root	N/A	22.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.35 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.21 %
Unclassified	root	N/A	22.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.74 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.21 %
Unclassified	root	N/A	22.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.88 %
Defluviicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus	0.74 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.21 %
Unclassified	root	N/A	22.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.62 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.15 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.74 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.21 %
Unclassified	root	N/A	22.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	6.62 %
Bradyrhizobium sp. 174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	5.15 %
Rhizobium mongolense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	0.74 %
Defluviicoccus vanus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1032621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300000787\|JGI11643J11755_11475825	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300001661\|JGI12053J15887_10210489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	984	Open in IMG/M
3300002245\|JGIcombinedJ26739_100127423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2401	Open in IMG/M
3300004114\|Ga0062593_103366686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300004153\|Ga0063455_101087070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	589	Open in IMG/M
3300004643\|Ga0062591_102407285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300005093\|Ga0062594_100116436	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300005178\|Ga0066688_10177839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300005328\|Ga0070676_11164621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	585	Open in IMG/M
3300005354\|Ga0070675_100390548	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300005437\|Ga0070710_10171606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1352	Open in IMG/M
3300005440\|Ga0070705_101828876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300005444\|Ga0070694_101031500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	684	Open in IMG/M
3300005467\|Ga0070706_101018308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300005546\|Ga0070696_101643625	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005555\|Ga0066692_10095119	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300005559\|Ga0066700_10228721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1294	Open in IMG/M
3300005587\|Ga0066654_10658728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300006028\|Ga0070717_10572379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1024	Open in IMG/M
3300006032\|Ga0066696_10922902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300006058\|Ga0075432_10295249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300006172\|Ga0075018_10501583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300006173\|Ga0070716_100578147	Not Available	842	Open in IMG/M
3300006175\|Ga0070712_100190831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1603	Open in IMG/M
3300006175\|Ga0070712_100387614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1151	Open in IMG/M
3300006175\|Ga0070712_100439527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300006175\|Ga0070712_101373977	Not Available	616	Open in IMG/M
3300006175\|Ga0070712_101808602	Not Available	535	Open in IMG/M
3300006603\|Ga0074064_10005016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300006797\|Ga0066659_10219172	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300006797\|Ga0066659_11544224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300006845\|Ga0075421_101104536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	891	Open in IMG/M
3300006845\|Ga0075421_101880155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300006845\|Ga0075421_102515579	Not Available	536	Open in IMG/M
3300006854\|Ga0075425_100919564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300006854\|Ga0075425_102122159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300006871\|Ga0075434_101247989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	755	Open in IMG/M
3300006880\|Ga0075429_100534408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Defluviicoccus → Defluviicoccus vanus	1027	Open in IMG/M
3300006903\|Ga0075426_10578420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	838	Open in IMG/M
3300006904\|Ga0075424_101395629	Not Available	744	Open in IMG/M
3300006904\|Ga0075424_101534761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300006904\|Ga0075424_102229677	Not Available	576	Open in IMG/M
3300006904\|Ga0075424_102256393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300006914\|Ga0075436_101274212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300007076\|Ga0075435_100774738	Not Available	835	Open in IMG/M
3300007255\|Ga0099791_10402815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300007255\|Ga0099791_10476426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300007258\|Ga0099793_10198610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	961	Open in IMG/M
3300007788\|Ga0099795_10422913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	609	Open in IMG/M
3300009011\|Ga0105251_10446799	Not Available	599	Open in IMG/M
3300009012\|Ga0066710_103130901	Not Available	638	Open in IMG/M
3300009038\|Ga0099829_11010137	Not Available	690	Open in IMG/M
3300009094\|Ga0111539_11326282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	835	Open in IMG/M
3300009100\|Ga0075418_10771153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1038	Open in IMG/M
3300009143\|Ga0099792_10782628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300009147\|Ga0114129_11176047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	956	Open in IMG/M
3300009147\|Ga0114129_12057968	Not Available	689	Open in IMG/M
3300009157\|Ga0105092_10733616	Not Available	576	Open in IMG/M
3300009545\|Ga0105237_12281410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300009553\|Ga0105249_12106279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300010159\|Ga0099796_10226619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300010358\|Ga0126370_10414747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1111	Open in IMG/M
3300010397\|Ga0134124_11118161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	805	Open in IMG/M
3300010399\|Ga0134127_13264878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300010999\|Ga0138505_100015660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300011271\|Ga0137393_11391253	Not Available	591	Open in IMG/M
3300012189\|Ga0137388_11136313	Not Available	718	Open in IMG/M
3300012198\|Ga0137364_11335860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	533	Open in IMG/M
3300012200\|Ga0137382_10723705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300012202\|Ga0137363_11355249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300012203\|Ga0137399_10246111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1465	Open in IMG/M
3300012206\|Ga0137380_11157705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300012349\|Ga0137387_10352978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300012354\|Ga0137366_10216564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1427	Open in IMG/M
3300012355\|Ga0137369_10902799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300012355\|Ga0137369_11126390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300012356\|Ga0137371_10405613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1057	Open in IMG/M
3300012357\|Ga0137384_10803364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	761	Open in IMG/M
3300012582\|Ga0137358_10786284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300012923\|Ga0137359_11285400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	620	Open in IMG/M
3300012924\|Ga0137413_11537035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300012957\|Ga0164303_10745436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300012958\|Ga0164299_10897322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	643	Open in IMG/M
3300012960\|Ga0164301_11518954	Not Available	552	Open in IMG/M
3300012961\|Ga0164302_10101622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1590	Open in IMG/M
3300012985\|Ga0164308_12241823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300012986\|Ga0164304_11550003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300012987\|Ga0164307_10496172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300012988\|Ga0164306_10500110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	935	Open in IMG/M
3300014325\|Ga0163163_11254109	Not Available	804	Open in IMG/M
3300014968\|Ga0157379_10859344	Not Available	859	Open in IMG/M
3300014969\|Ga0157376_12432438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300014969\|Ga0157376_12521060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300015371\|Ga0132258_11480170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	1715	Open in IMG/M
3300015371\|Ga0132258_12170347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300015371\|Ga0132258_13931953	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300015372\|Ga0132256_101840549	Not Available	713	Open in IMG/M
3300015374\|Ga0132255_102075787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300015374\|Ga0132255_103519299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300015374\|Ga0132255_104412636	Not Available	596	Open in IMG/M
3300016404\|Ga0182037_10092324	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300016422\|Ga0182039_12272209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	501	Open in IMG/M
3300018077\|Ga0184633_10561593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300018433\|Ga0066667_11267501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300020002\|Ga0193730_1103148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	793	Open in IMG/M
3300022898\|Ga0247745_1057217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300025899\|Ga0207642_10385449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	835	Open in IMG/M
3300025906\|Ga0207699_10505503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	873	Open in IMG/M
3300025915\|Ga0207693_10296969	Not Available	1266	Open in IMG/M
3300025916\|Ga0207663_10548913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300025922\|Ga0207646_11160687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300025931\|Ga0207644_10081516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2391	Open in IMG/M
3300026331\|Ga0209267_1235124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	660	Open in IMG/M
3300026490\|Ga0257153_1055726	Not Available	806	Open in IMG/M
3300026538\|Ga0209056_10522126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300026547\|Ga0209156_10181801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1009	Open in IMG/M
3300027568\|Ga0208042_1162376	Not Available	558	Open in IMG/M
3300027738\|Ga0208989_10149342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300027909\|Ga0209382_11235682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300028379\|Ga0268266_10123900	All Organisms → cellular organisms → Bacteria	2303	Open in IMG/M
3300028536\|Ga0137415_10081700	All Organisms → cellular organisms → Bacteria → Proteobacteria	3090	Open in IMG/M
3300028712\|Ga0307285_10015191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1711	Open in IMG/M
3300028802\|Ga0307503_10427496	Not Available	698	Open in IMG/M
3300031152\|Ga0307501_10237026	Not Available	537	Open in IMG/M
3300031897\|Ga0318520_10700083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	633	Open in IMG/M
3300032180\|Ga0307471_102062358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300032180\|Ga0307471_103149212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300032205\|Ga0307472_102094599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300034643\|Ga0370545_038156	Not Available	892	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.85%
Host-Associated	Host-Associated	30.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.65%
Plants	Host-Associated → Plants	30.15%
Aquatic	Environmental → Aquatic	2.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Sediment	Environmental → Aquatic → Sediment	1.47%
Freshwater	Environmental → Aquatic → Freshwater	0.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.74%
Roots	Host-Associated → Plants → Roots	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.85%
Loam	Environmental → Terrestrial → Soil → Loam	14.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.74%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.44%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.21%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.47%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.47%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10326213	2228664022	Soil	FSAEQYRAKAAEFRALLTNIRRSPNETSEFRNLEQTYTTLAENEEWMAI
JGI11643J11755_114758251	3300000787	Soil	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKPGDDG
JGI12053J15887_102104892	3300001661	Forest Soil	MFTSQQYRAKAAEFRLRLADMPCSPNETREFRDLEHTYTTLAENEEWLALHADQTIQPDIRTTAL*
JGIcombinedJ26739_1001274236	3300002245	Forest Soil	MFTAEQYRAKAAEFRAFLGNAPRSPTETREFRHLEQIYTTLAENEEWMAVNID
Ga0062593_1033666862	3300004114	Soil	MFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTLAENEEWMA
Ga0063455_1010870701	3300004153	Soil	MFTAEQYRAKAAEFNALLANTPRSPNETNEFRSLAQTYTTLADDEEWVA
Ga0062591_1024072851	3300004643	Soil	MFTAEQYRAKAAEFNALLANTPRSPSETNELRNLAQVYTTLAENEEWMAVHVDK
Ga0062594_1001164364	3300005093	Soil	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAV
Ga0066688_101778395	3300005178	Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKT
Ga0070676_111646212	3300005328	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHL
Ga0070675_1003905482	3300005354	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLD
Ga0070710_101716061	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRALLTNRPRSPNETKEFRDLEQTYTTLAENEEWMAVNVDKAIQR*
Ga0070705_1018288761	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDR
Ga0070694_1010315001	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTRLAENEEWM
Ga0070706_1010183082	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFSAERYRAKAAEFRALLMNIPRSSNETSELRNLEQTYATLAENEEWMAINIDKTVGAGL
Ga0070696_1016436251	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VFTCEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMA
Ga0066692_100951195	3300005555	Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTRLAENEEWMAVNIDKTIQR
Ga0066700_102287214	3300005559	Soil	MFTAEQYRAKAAEFRTFLTNTPRSPNETREFRDLEQTYTTLSENEEWMAVHIDKT
Ga0066654_106587282	3300005587	Soil	VCSRLPWIRARQMFTAERFRAKAAEFRALLTSIARSPNETREFLDLEQTYTTLAENEEWM
Ga0070717_105723792	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLPPAVERACQMFTAEQFRAKAAEFRALLTNTAPSPNETREFRDLEQTYTTLAENE
Ga0066696_109229022	3300006032	Soil	MFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEEWMAGH
Ga0075432_102952491	3300006058	Populus Rhizosphere	MFTAEQYRAKAAEFNAFLANSPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDR
Ga0075018_105015832	3300006172	Watersheds	VLLLATERACQMFTAEQYRAKAAEFRTLLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQ
Ga0070716_1005781473	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SNQMFSATQYRAKAAEFKVLLTNTLLSPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREEAPL*
Ga0070712_1001908311	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEEWMA
Ga0070712_1003876143	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VHPPAIERVCQMFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEW
Ga0070712_1004395271	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VLPPAVERACQMFTAEQFRAKAAEFRALLTNTARSPNETREFRDLEQTYTTLAENEEWMEVH
Ga0070712_1013739771	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFSATQYRAKAAEFKALLTSTLLSPNEISEFRNLEQTYTSLADNEEWMTINIGKRVQRGEDREET
Ga0070712_1018086021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GFTALLTNTLLSPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREEAPL*
Ga0074064_100050162	3300006603	Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYDNRT
Ga0066659_102191721	3300006797	Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQR
Ga0066659_115442241	3300006797	Soil	AKAAEFRALLTSMPRSPNETSEFRKLEQTYTTLAENEEWMAINIGKTVQRGNQP*
Ga0075421_1011045361	3300006845	Populus Rhizosphere	MFTAEQYRAKAAEFRARLTNTPRSPNETKEFRDLEQSYTRLAENEEWMAVNIDKTIQPGENDNS
Ga0075421_1018801551	3300006845	Populus Rhizosphere	MFSAEQYRAKAAEFRALLTITPRSPSETSELRNLEQTYTTLAENQEWMAANIDKTVQ
Ga0075421_1025155791	3300006845	Populus Rhizosphere	MFTSQQYRAKAAAFRAFLANPSRSPDQTKEFRRLEQTYTTLAENEEWM
Ga0075425_1009195641	3300006854	Populus Rhizosphere	AEQYRAKAAEFRALLTNRPRSPNETKEFRDLEQTYTTLAENEEWMAVNVDKAIQR*
Ga0075425_1021221592	3300006854	Populus Rhizosphere	KYRAKAAEFRALLTNMPLSSNETSEFRNLEQTYTTLAENEEWMAVNNGKTVQRGENRDDAPL*
Ga0075434_1006262242	3300006871	Populus Rhizosphere	VLPPAGERACQMFTADRFRAKAAEFRALLTNIARSPNETREFQDLER
Ga0075434_1012479892	3300006871	Populus Rhizosphere	MFSADQYRVKAAEFRALLMNIPRSSNETNELRNLEQTYTTLAENEEWMAVNNGKTVQRGENRDDTPL*
Ga0075429_1005344083	3300006880	Populus Rhizosphere	MFSAEQYRAKAAEFRALLTITPRSPSETSELRNLEQTYTTLAENQE
Ga0075426_105784201	3300006903	Populus Rhizosphere	MFTADQFRAKAAEFRAMLTNIARSPNETREFQDLERTYTTLAENEEWMAVHIDKT
Ga0075424_1013956292	3300006904	Populus Rhizosphere	MFSATQYRAKAAEFKALLTSTLLSPNEISEFRNLEQTYTSLAENEEWMTINI
Ga0075424_1015347611	3300006904	Populus Rhizosphere	MFTAEQFRAKAAEFRALLTNMARSPNETREFRDLEQTYTTLAENEEW
Ga0075424_1022296771	3300006904	Populus Rhizosphere	MFSATQFRAKAAEFRTLLTETACSPNETKEFSDLEQTYTVLAENEEWMAVHIDQ
Ga0075424_1022563931	3300006904	Populus Rhizosphere	MFSARQYRAKAAEFRALLTGTPRSWNETKELQNLQQTYTTLAENEEWITANIDKTIQRERNRDTVLSC*
Ga0075436_1012742121	3300006914	Populus Rhizosphere	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRDLERIYTRLAENEEWMAVHIDKTIQ
Ga0075435_1007747382	3300007076	Populus Rhizosphere	MFSATQYRAKAAGFTALLTNTLLSPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREEAPL*
Ga0099791_104028153	3300007255	Vadose Zone Soil	MFSAEQYRAKAAEFRALLMNIPRSSNEASELRNLEQTYATLAENEEWMA
Ga0099791_104764261	3300007255	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTLAENEEWMAVHL
Ga0099793_101986101	3300007258	Vadose Zone Soil	MFTTEQYRAKAAEFRAFLASTPRSPNETREFRHLEQIYTTLAENEEWLAVHIDKTIQRER
Ga0099795_104229133	3300007788	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLASTPRSPNETREFRHLEQIYTTLAENEEWLAVHID
Ga0105251_104467992	3300009011	Switchgrass Rhizosphere	MFSATQYRAKAAEFKALLTSTLLAPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREEAPL*
Ga0066710_1031309011	3300009012	Grasslands Soil	MFAAEQYQAKAAEYRALLTNRPRTPNETQEFSDLDQNFTTLADIEDWIAFKFD
Ga0099829_110101371	3300009038	Vadose Zone Soil	MFSAGQYRAKAAELTALLTSTPRSSNETSELRNLEQTYTTLADNEDWMAINIDRTIRRRKNR
Ga0111539_113262822	3300009094	Populus Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWM
Ga0075418_107711533	3300009100	Populus Rhizosphere	MFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKT
Ga0099792_107826282	3300009143	Vadose Zone Soil	MFSAEQYRAKVAEYTALLASMPRSPNETSEFRNLEQTYTTLADNEEWMTINIGKTVRQR
Ga0114129_111760471	3300009147	Populus Rhizosphere	MFTAEQYRAKAAEFTALLTNTPRSQKETSEFRDLEQTYTTLAENEEWMAVHLDKTIQRRKNSENR
Ga0114129_120579681	3300009147	Populus Rhizosphere	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEE
Ga0105092_107336161	3300009157	Freshwater Sediment	MFSSEPYRAKAAEFRDLLANAPDSPDEAREFRNLERTYTTLAENEE
Ga0105237_122814102	3300009545	Corn Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYRRLRENEEWMAVHLDRTIQRRK
Ga0105249_121062791	3300009553	Switchgrass Rhizosphere	MFTAEQYRAKAAEFSPFLANTPRSPNETSEFRNLAQTYTTPTDSEE*
Ga0099796_102266191	3300010159	Vadose Zone Soil	MFSAEQYRAKVAEYTALLASMPRSPNETSEFRNLEQTYTTLADNEEWMTINIGKTVRQRRNLDNRTGLDDDEA
Ga0126370_104147472	3300010358	Tropical Forest Soil	MFAAEQYRAKAAEFRAFLTNTPRSPNEMREFLDLEQTYTTLAENEEWMGSPYR*
Ga0134124_111181611	3300010397	Terrestrial Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRK
Ga0134127_132648781	3300010399	Terrestrial Soil	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVH
Ga0138505_1000156601	3300010999	Soil	MFSAGQYRAKAAEFTALLPDTPRSPNETREFRDLEMTYTTLAENEEWMAVHLLPSLRKKSKF*
Ga0137393_113912532	3300011271	Vadose Zone Soil	MFSAGQYRAKAAELTALLTSTPRSSNETSELRNLEQTYTTL
Ga0137388_111363131	3300012189	Vadose Zone Soil	MFSAGQYRAKAAELTALLTSTPRSSNETSELRNLEQTY
Ga0137364_113358601	3300012198	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTRLAENEEW
Ga0137382_107237052	3300012200	Vadose Zone Soil	MFTAEQFRAKAAEFRALLTNTARSPNETREFRDLEQTYTTLAKNEEWMKVHTR*
Ga0137363_113552492	3300012202	Vadose Zone Soil	MFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEEWMAVHIDKT
Ga0137399_102461111	3300012203	Vadose Zone Soil	MFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEEWMAVHIDKTIQRRKNY
Ga0137380_111577051	3300012206	Vadose Zone Soil	MSFAEQYRAKAAEFRALLTNTPRSPKETSEFRDLEQTYTTLAENE
Ga0137387_103529781	3300012349	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQ
Ga0137366_102165643	3300012354	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTLAENEEWMAVHLDK
Ga0137369_109027991	3300012355	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLTNTPRSPNETREFRDLEQTYTTL
Ga0137369_111263901	3300012355	Vadose Zone Soil	VQLFTAEQYRAKAAEFRTFLTNTPRSPNETREFRDLEQTYTTL
Ga0137371_104056132	3300012356	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTLAENEEWMAVHLDKTIQR
Ga0137384_108033643	3300012357	Vadose Zone Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDRTV
Ga0137358_107862841	3300012582	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETKEFRDLEQTYTTLAENEEWMAVHIDKTTQRRKNYD
Ga0137359_112854003	3300012923	Vadose Zone Soil	MFTTEQYRAKAAEFRAFLANTPRSPNETREFRHLERVYTRLAENEEWMAVNI
Ga0137413_115370351	3300012924	Vadose Zone Soil	MFTAEQYRAKAAEFRAFLTNTPRSPKETKEFRDLEQTYTTLAENEEWMAVHIDKTTQRRK
Ga0164303_107454363	3300012957	Soil	MFTAEQYRTKAAEFRAFLANTPRSPNETREFRHLEQVYTTLAENEEWLAVHIDKTIQRRENDD
Ga0164299_108973221	3300012958	Soil	MFTAEQYRAKAAEFNSFLANTPRSPNETSEFRNRAQTYTTLAENEEWMAVHLDRTV
Ga0164301_115189542	3300012960	Soil	MFSATQYRAKAAEFKALLTSTLLSPNEISELRNLEQTYTSLAENEEWMTINIGKRVQRGEDREETPL*
Ga0164302_101016224	3300012961	Soil	MFTAEQYRAKAAEFNAFLANSPRSLNETSEFRNLAQTYTTLAENEEWMAVHLDRT
Ga0164308_122418231	3300012985	Soil	QMFTAEQFRAKAAEFRALLTNTAPSPNETREFRNLEQTYTTLAENEEWLAVHIDNDSTERE*
Ga0164304_115500031	3300012986	Soil	MFTAQQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYTTLAENEEWMAVHIDKTTQR
Ga0164307_104961721	3300012987	Soil	MFTAEQYRAKAAEFRARLTDTLRSPTETKEFRDLEQTYTKLAENEEWMA
Ga0164306_105001102	3300012988	Soil	MFTAEQYRAKAAEFRALLTNTSRSPNETSEFRDLEQTYTTLAEN
Ga0163163_112541093	3300014325	Switchgrass Rhizosphere	MFSATQYRAKAAEFKALLTSTLLSPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREESPL*
Ga0157379_108593442	3300014968	Switchgrass Rhizosphere	MFSATQYRAKAAEFKALLTSTLLAPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREESPL*
Ga0157376_124324382	3300014969	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNAFLANTPRSPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRR
Ga0157376_125210602	3300014969	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPSSLTETNELRNLAQVYTTLAENEEWMAVHVDKTVRRK
Ga0132258_114801701	3300015371	Arabidopsis Rhizosphere	MFSAAQYRTKAAEFRALLTSIPRSQNETREFRNLERTYTTLAENEEWMSVNIDKIIAPPR
Ga0132258_121703472	3300015371	Arabidopsis Rhizosphere	MFTAKKYRAKAAEFRAFLTDKLRSPSEMTEFRDLERTYTTLAENEEWM
Ga0132258_139319531	3300015371	Arabidopsis Rhizosphere	MSSSEPFRAKAAEFRDLLAKALHSPNEASGLRDLERTYTTLAENEEWMATH
Ga0132256_1018405492	3300015372	Arabidopsis Rhizosphere	MFSATQYRAKAAEFKALLTSTLLSPNEISEFRNLEQTYTSLAENEEWMTINIGKRVQRGEDREETPL*
Ga0132257_1046129171	3300015373	Arabidopsis Rhizosphere	VLPPAGERACQMFTADRFRAKAAEFRALLTNIARSPNETREFQDLERT
Ga0132255_1020757871	3300015374	Arabidopsis Rhizosphere	MFCAEQHRTKAAEFRALLMNIRRSSNETSELRSLEQTYTTLAENEEWMAIN
Ga0132255_1035192992	3300015374	Arabidopsis Rhizosphere	MFSADQYRVKAAEFRALLMNIPRSSNETNELRNLEQTYTTLAENEEWMA
Ga0132255_1044126361	3300015374	Arabidopsis Rhizosphere	MFSAEQYRAKAAEFRALLANIPRSPNETSEFRNLEQMYTTLAENEENGDEY*
Ga0182037_100923241	3300016404	Soil	MFTAEQYRVKAAEFRAFLANTPRSPNETREFRDLERIYTRLAENEEWM
Ga0182039_122722091	3300016422	Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRDLERIYTRLAENEEWMA
Ga0184633_105615931	3300018077	Groundwater Sediment	MFTAEQYRVKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQRRKHGNE
Ga0066667_112675011	3300018433	Grasslands Soil	MFTAERFRAKAAEFRALLTNIARSPNETREFLDLEQTYTTLAENEEWMAVHINKMIQRRKNYD
Ga0193730_11031481	3300020002	Soil	MFTAEQYRAKAAEFNAFLANTPRLPNETSEFRNLAQTYTTLAENEEWMAVHLDRTVQRRKHGDDG
Ga0247745_10572172	3300022898	Soil	MFTAEQYRAKAAEFSPFLANTPRSPNETSEFRNLAQTYTTPTDSEE
Ga0179591_10496415	3300024347	Vadose Zone Soil	VLWPAGDKAYQMFTAEQYRAKAAEFRALLTNTPRSPNETREFRDLEQTYTRLAE
Ga0207642_103854491	3300025899	Miscanthus Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRT
Ga0207699_105055032	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VLPPAVERACQMFTAEQYRAKAAEFRASLTNTPRSPNETREFRDLEQTYTTLAENE
Ga0207693_102969693	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MFSATQYRAKAAEFKALLTSTLLSPNEISEFRNLEQTYTSLAENEEWMTINIDKRIQRREDREEAPL
Ga0207663_105489131	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRARLTDTLRSPNETKEFRDLEQTYTKLAENEEWMAVNFD
Ga0207646_111606871	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERIYTTLAENEEWMAVHIDKTIQRGENYDNRA
Ga0207644_100815161	3300025931	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTVQRRKHGDD
Ga0209267_12351241	3300026331	Soil	MFTAEQYRAKAAEFRTFLANTPRSPNETREFRHLERIYTTLAENEEWM
Ga0257153_10557262	3300026490	Soil	MFSAEQYRAKAAEFRALLMNIPRSSNEASELRNLEQTYATLAENEEWM
Ga0209056_105221262	3300026538	Soil	MFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEEWMAVHTDKRIPRRKNYD
Ga0209156_101818013	3300026547	Soil	MFTADQFRAKAAEFRALLTNVARSPNETREFRDLEQTYTTLAENEEWMAVHIDKTIQRRKNYD
Ga0208042_11623762	3300027568	Peatlands Soil	MYTAEQYRARAAEYRELLANSRSLDETKELRNLEQTYTT
Ga0208989_101493421	3300027738	Forest Soil	MFSAEQYRAKAAEFRTLLTNMRRSPNETSEFRNLEQTYTTLAENEEWMAINIDKTIQQREDLDNRTSP
Ga0209382_112356822	3300027909	Populus Rhizosphere	MFTAEQYRAKAAEFRARLTNTPRSPNETKEFRDLEQSYTRLAENEEWMAVNIDKTI
Ga0268266_101239003	3300028379	Switchgrass Rhizosphere	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRKLAQTYTTLAENEEWMAVHLDRTIQRRKHGDD
Ga0137415_100817004	3300028536	Vadose Zone Soil	MFTTEQYRAKAAEFRAFLANTPRSPNETREFRHLERVYTRLAENEEWMAVNIDKTIQPAFTG
Ga0307285_100151913	3300028712	Soil	MFTAEQYRAKAAEFNALLANTPRSPNETSEFRNLAQTYTTLAENEDWIAVHLDRTVQ
Ga0307311_102011941	3300028716	Soil	VLPPAVERACQMFTAEQYRAKAAEFRAFLTNTPRSPKETREFRDLEQTYT
Ga0307503_104274961	3300028802	Soil	MFSAEQYRAKVAEYTALLASMPRSPNETSEFRNLEQTYTTLADN
Ga0307277_104788361	3300028881	Soil	VLPLARERACQMFTAQQYRAKAAEFRAFLTNTSRSPNETREFRDLEMTY
Ga0307501_102370261	3300031152	Soil	MFSAEQYRAKAAEYAALLTHFPRSPNETREFRNLEQTYTTLAENEEWIAINIGKTVRRR
Ga0307469_112711732	3300031720	Hardwood Forest Soil	VLPLATERACQMFTAEQYRAKAAEFRAFLTNTSRSPNETSEFRDLEQTYTTL
Ga0318520_107000831	3300031897	Soil	MFTAEQYRAKAAEFRAFLANTPRSPNETREFRHLERVYTRLAENEEWMA
Ga0307471_1020623581	3300032180	Hardwood Forest Soil	CASVLPRATGKDLSMFSAEKYRAKAAEFRALLANMPLSSNETSEFRNLEQTYTTLAENEEWMAVNNGKTVQRGENRDDAPL
Ga0307471_1031492121	3300032180	Hardwood Forest Soil	MFTAEQFRAKAAEFRALLTNITRSPNETREFRDLEQTYTTLAENEEWMAAHIDTTIKRRKNYD
Ga0307472_1020945991	3300032205	Hardwood Forest Soil	VLPPAVERACQMFTAEQFRAKAAEFRALLTNIARSPNETREFRDLEQTYTTLAENEE
Ga0370545_038156_1_126	3300034643	Soil	MFSAGQYRAKAAEFTTLLADTPRSPNETSELRNLEQTYTTLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057640

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences