Metagenome / Metatranscriptome Family F057699

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057699
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	104 residues
Representative Sequence	MSKAQRFRLRLFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Number of Associated Samples	110
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	25.19 %
% of genes near scaffold ends (potentially truncated)	47.06 %
% of genes from short scaffolds (< 2000 bps)	93.38 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.559 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (28.676 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.206 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.19% β-sheet: 0.00% Coil/Unstructured: 25.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF02735	Ku	12.50
PF03703	bPH_2	3.68
PF11272	DUF3072	2.94
PF07043	DUF1328	0.74
PF05168	HEPN	0.74
PF02311	AraC_binding	0.74
PF04226	Transgly_assoc	0.74
PF06803	DUF1232	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	12.50
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	3.68
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	3.68
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.74
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.74
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.74
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.74
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
All Organisms	root	All Organisms	40.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
cellular organisms	root	All Organisms → cellular organisms	40.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	5.15 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.21 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %
Terasakiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.41 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.21 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.47 %
Terasakiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.15 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.41 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.47 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.47 %
Terasakiella pusilla	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.56 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.15 %
Bradyrhizobium sp. LMTR 3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	4.41 %
Mesorhizobium sp. B2-1-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-1-8	1.47 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.47 %
Terasakiella pusilla	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	0.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_14116551	Not Available	507	Open in IMG/M
3300000955\|JGI1027J12803_105365190	Not Available	782	Open in IMG/M
3300000956\|JGI10216J12902_102626818	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300004114\|Ga0062593_100627026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1032	Open in IMG/M
3300004114\|Ga0062593_100757700	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300004114\|Ga0062593_101038320	Not Available	844	Open in IMG/M
3300004114\|Ga0062593_101601051	Not Available	707	Open in IMG/M
3300004463\|Ga0063356_102907974	Not Available	738	Open in IMG/M
3300004480\|Ga0062592_101374016	Not Available	671	Open in IMG/M
3300004643\|Ga0062591_101001702	Not Available	795	Open in IMG/M
3300004643\|Ga0062591_101354584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300005329\|Ga0070683_101483208	Not Available	652	Open in IMG/M
3300005331\|Ga0070670_100183193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1818	Open in IMG/M
3300005332\|Ga0066388_100420448	Not Available	1980	Open in IMG/M
3300005332\|Ga0066388_103556797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	795	Open in IMG/M
3300005332\|Ga0066388_105185705	Not Available	661	Open in IMG/M
3300005332\|Ga0066388_106410825	Not Available	593	Open in IMG/M
3300005338\|Ga0068868_102007788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	549	Open in IMG/M
3300005339\|Ga0070660_100324675	Not Available	1265	Open in IMG/M
3300005347\|Ga0070668_101408429	Not Available	636	Open in IMG/M
3300005367\|Ga0070667_101767766	Not Available	582	Open in IMG/M
3300005434\|Ga0070709_10753836	Not Available	761	Open in IMG/M
3300005437\|Ga0070710_10675613	Not Available	726	Open in IMG/M
3300005457\|Ga0070662_100050992	All Organisms → cellular organisms → Bacteria	2986	Open in IMG/M
3300005466\|Ga0070685_10444099	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005543\|Ga0070672_101041088	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300005544\|Ga0070686_101021647	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005545\|Ga0070695_100677391	Not Available	816	Open in IMG/M
3300005547\|Ga0070693_100199769	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300005548\|Ga0070665_101005020	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300005549\|Ga0070704_100531611	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300005549\|Ga0070704_100645781	Not Available	934	Open in IMG/M
3300005563\|Ga0068855_101329628	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005618\|Ga0068864_101733492	Not Available	629	Open in IMG/M
3300005764\|Ga0066903_102903908	Not Available	929	Open in IMG/M
3300005764\|Ga0066903_104793605	Not Available	719	Open in IMG/M
3300005764\|Ga0066903_107230910	Not Available	574	Open in IMG/M
3300005764\|Ga0066903_107463560	Not Available	564	Open in IMG/M
3300005844\|Ga0068862_100690617	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005937\|Ga0081455_10350924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1041	Open in IMG/M
3300006049\|Ga0075417_10234813	Not Available	876	Open in IMG/M
3300006058\|Ga0075432_10610096	Not Available	500	Open in IMG/M
3300006163\|Ga0070715_10779879	Not Available	578	Open in IMG/M
3300006173\|Ga0070716_100856190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	708	Open in IMG/M
3300006173\|Ga0070716_101215650	Not Available	606	Open in IMG/M
3300006175\|Ga0070712_100270669	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300006845\|Ga0075421_101887927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	640	Open in IMG/M
3300006854\|Ga0075425_100444426	All Organisms → cellular organisms → Bacteria → Proteobacteria	1493	Open in IMG/M
3300006854\|Ga0075425_100688631	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300006871\|Ga0075434_100454779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1302	Open in IMG/M
3300006904\|Ga0075424_100445389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1382	Open in IMG/M
3300006904\|Ga0075424_102147800	Not Available	588	Open in IMG/M
3300007076\|Ga0075435_101478544	Not Available	596	Open in IMG/M
3300009098\|Ga0105245_10717317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1034	Open in IMG/M
3300009098\|Ga0105245_11719794	Not Available	680	Open in IMG/M
3300009101\|Ga0105247_10050832	All Organisms → cellular organisms → Bacteria	2551	Open in IMG/M
3300009156\|Ga0111538_10944703	Not Available	1091	Open in IMG/M
3300009162\|Ga0075423_11458837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	733	Open in IMG/M
3300009162\|Ga0075423_11952960	Not Available	635	Open in IMG/M
3300009174\|Ga0105241_10209019	All Organisms → cellular organisms → Bacteria → Proteobacteria	1634	Open in IMG/M
3300009176\|Ga0105242_10253394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1587	Open in IMG/M
3300009177\|Ga0105248_10214990	All Organisms → cellular organisms → Bacteria	2166	Open in IMG/M
3300009177\|Ga0105248_10632017	Not Available	1208	Open in IMG/M
3300009545\|Ga0105237_10138460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-1-8	2429	Open in IMG/M
3300009792\|Ga0126374_11245182	Not Available	598	Open in IMG/M
3300010358\|Ga0126370_10115209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1893	Open in IMG/M
3300010359\|Ga0126376_10975938	Not Available	845	Open in IMG/M
3300010360\|Ga0126372_10789819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	939	Open in IMG/M
3300010361\|Ga0126378_11901954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300010361\|Ga0126378_12773340	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_12107158	Not Available	666	Open in IMG/M
3300010371\|Ga0134125_10412304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1498	Open in IMG/M
3300010371\|Ga0134125_10682832	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300010376\|Ga0126381_100636800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1520	Open in IMG/M
3300010397\|Ga0134124_10854634	Not Available	913	Open in IMG/M
3300010398\|Ga0126383_10331661	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300010398\|Ga0126383_12736626	Not Available	576	Open in IMG/M
3300010398\|Ga0126383_13246315	Not Available	531	Open in IMG/M
3300010399\|Ga0134127_10281931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1591	Open in IMG/M
3300012212\|Ga0150985_111876765	Not Available	603	Open in IMG/M
3300012469\|Ga0150984_104589996	Not Available	786	Open in IMG/M
3300012903\|Ga0157289_10140066	Not Available	736	Open in IMG/M
3300012910\|Ga0157308_10124304	Not Available	792	Open in IMG/M
3300012911\|Ga0157301_10382026	Not Available	540	Open in IMG/M
3300012971\|Ga0126369_10837643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1003	Open in IMG/M
3300012971\|Ga0126369_11874649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300013102\|Ga0157371_11606840	Not Available	509	Open in IMG/M
3300013104\|Ga0157370_11884252	Not Available	536	Open in IMG/M
3300013105\|Ga0157369_11597878	Not Available	663	Open in IMG/M
3300014745\|Ga0157377_10267123	Not Available	1115	Open in IMG/M
3300015374\|Ga0132255_103518237	Not Available	666	Open in IMG/M
3300016270\|Ga0182036_11050334	Not Available	673	Open in IMG/M
3300016341\|Ga0182035_11901698	Not Available	540	Open in IMG/M
3300016371\|Ga0182034_11270345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	642	Open in IMG/M
3300016387\|Ga0182040_10683159	Not Available	838	Open in IMG/M
3300016422\|Ga0182039_12018467	Not Available	531	Open in IMG/M
3300016445\|Ga0182038_10936726	Not Available	765	Open in IMG/M
3300019356\|Ga0173481_10019975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-1-8	2027	Open in IMG/M
3300019361\|Ga0173482_10022237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1816	Open in IMG/M
3300019361\|Ga0173482_10118377	All Organisms → cellular organisms → Bacteria → Proteobacteria	988	Open in IMG/M
3300020080\|Ga0206350_11090698	Not Available	693	Open in IMG/M
3300021560\|Ga0126371_10548049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	1306	Open in IMG/M
3300021560\|Ga0126371_11238638	Not Available	881	Open in IMG/M
3300021560\|Ga0126371_13245301	Not Available	550	Open in IMG/M
3300022467\|Ga0224712_10320064	Not Available	729	Open in IMG/M
3300023072\|Ga0247799_1015983	Not Available	1119	Open in IMG/M
3300023261\|Ga0247796_1009672	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300025313\|Ga0209431_10303829	Not Available	1248	Open in IMG/M
3300025900\|Ga0207710_10110484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1305	Open in IMG/M
3300025901\|Ga0207688_10587099	Not Available	702	Open in IMG/M
3300025914\|Ga0207671_10109445	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300025915\|Ga0207693_10141424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1892	Open in IMG/M
3300025915\|Ga0207693_10900010	Not Available	679	Open in IMG/M
3300025916\|Ga0207663_10406517	Not Available	1042	Open in IMG/M
3300025923\|Ga0207681_11669480	Not Available	533	Open in IMG/M
3300025939\|Ga0207665_11016327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	660	Open in IMG/M
3300025940\|Ga0207691_11167443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	639	Open in IMG/M
3300025949\|Ga0207667_11706022	Not Available	596	Open in IMG/M
3300025961\|Ga0207712_10583761	Not Available	965	Open in IMG/M
3300025972\|Ga0207668_10691604	Not Available	896	Open in IMG/M
3300025981\|Ga0207640_11018375	Not Available	729	Open in IMG/M
3300026067\|Ga0207678_10187212	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300026095\|Ga0207676_12597258	Not Available	503	Open in IMG/M
3300027657\|Ga0256865_1198219	Not Available	534	Open in IMG/M
3300031719\|Ga0306917_10520144	Not Available	935	Open in IMG/M
3300031736\|Ga0318501_10197710	Not Available	1051	Open in IMG/M
3300031833\|Ga0310917_10201815	Not Available	1330	Open in IMG/M
3300031912\|Ga0306921_11414402	Not Available	764	Open in IMG/M
3300031945\|Ga0310913_10094172	Not Available	2017	Open in IMG/M
3300031946\|Ga0310910_10104888	Not Available	2105	Open in IMG/M
3300031947\|Ga0310909_10804944	Not Available	776	Open in IMG/M
3300032035\|Ga0310911_10328451	Not Available	882	Open in IMG/M
3300032065\|Ga0318513_10571035	Not Available	554	Open in IMG/M
3300032076\|Ga0306924_10406748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1558	Open in IMG/M
3300032261\|Ga0306920_102015049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.50%
Host-Associated	Host-Associated	37.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Plants	Host-Associated → Plants	37.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.65%
Loam	Environmental → Terrestrial → Soil → Loam	19.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.21%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.47%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.47%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.47%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027657	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 HiSeq	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_141165511	3300000363	Soil	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILSFSFLLILALVVYGLFRAAGSFLERLNGISLAAHSILHTNYGKARTQTYESTPAITSSMMGHIQ*
JGI1027J12803_1053651902	3300000955	Soil	MLSCDGGGAFMGKAQTFKLVFIYGAVFVLGAAYGLFQHRRDAIDWFTDSLPLIDEILPFSLLIILALVLIGLLRGAASVLETLNGISLAAHSTLHTNYGKARL*
JGI10216J12902_1026268182	3300000956	Soil	MQSKALRFRLVLLYGAIAVLGAAYGVFEQPQAFDRLANTMRQSLPLMKEMLPFSFLLILALVVCGLFRAVGLVLERLNGVSIAAHSSRHTNYGKAWKQTV*
Ga0062593_1006270261	3300004114	Soil	MGKAQTFKLVFIYGAVFVLGAAYGLFEHRRDAIDWFTDSLPLIDEILPFSLLIILALVLIGLLRGAASVLETLNGISLAAHSTLHTNYGKARL*
Ga0062593_1007577002	3300004114	Soil	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0062593_1010383201	3300004114	Soil	MSKAQRFWLGLLYGAMAILGAAYGVFEQQQAIDRLTHSMKEISLPFMKEILPFFFLLILALVVYGSFRAARSVFERLHGVSLAAHNTLHTNYGKAWKQIV*
Ga0062593_1016010512	3300004114	Soil	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0063356_1029079741	3300004463	Arabidopsis Thaliana Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKG
Ga0062592_1013740161	3300004480	Soil	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAIFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGPHTNSVITSS*
Ga0062591_1010017021	3300004643	Soil	MLMGKAQTFKLVFIYGAVFVLGAAYGLFEHRRDAIDWFTDSLPLIDEILPFSLLIILALVLIGLLRGAASVLETLNGISLAAHSTLHTNYGKARL*
Ga0062591_1013545841	3300004643	Soil	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQT
Ga0070683_1014832081	3300005329	Corn Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNA
Ga0070670_1001831935	3300005331	Switchgrass Rhizosphere	MAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0066388_1004204483	3300005332	Tropical Forest Soil	MSKEQRFLLGLVYCAVFVLGATYGFLGHQKQAVDWLTYSLPLIKEILPFFLLLILAWVIYGLFRAAGSVLKSLNGVSLAAHSILHTNYGKARTQTV*
Ga0066388_1035567971	3300005332	Tropical Forest Soil	MSKEQRFRLGLLYSAIAVLGAAYGIFEQPQAIDRLANSMKQSLLLMKEMLPSALLLILALLVYGLFRTAGSVLERLNGVSIAAHSSLHTNYGKARKQIV*
Ga0066388_1051857052	3300005332	Tropical Forest Soil	MSKAQRFPLGLLYGAIALLGAAYGVLEQPQAIDRFANSMNGVWLPLMKEILPFSLLLILALVVYGLFRAASSVRELLNGASLAALGSLQTNLRLRR*
Ga0066388_1064108252	3300005332	Tropical Forest Soil	AQVNKTCSPNVLCFPSWGWGAFLSRAERFRLGLVYGAVFILGATYGIFEHQKQAIDWLTDSLPLIKEMLPFFLLLILALVVNGLFRAAGSVLERLNGVSVAAHSILHTNYGKARTQTV*
Ga0068868_1020077881	3300005338	Miscanthus Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTV*
Ga0070660_1003246752	3300005339	Corn Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVLFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070668_1014084291	3300005347	Switchgrass Rhizosphere	MLPLGGKFMAKPQGVQLGLLYSAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070667_1017677661	3300005367	Switchgrass Rhizosphere	MLTLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070709_107538361	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0070710_106756131	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAKPQGVQLGLLYGAVFVLGAASAVFEHQKTAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070711_1002154213	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070662_1000509927	3300005457	Corn Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKART
Ga0070685_104440991	3300005466	Switchgrass Rhizosphere	QNMLAYMLCFPPVELGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070672_1010410881	3300005543	Miscanthus Rhizosphere	MLPPVGLGDGFMSKTQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070686_1010216471	3300005544	Switchgrass Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTY
Ga0070695_1006773913	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VRGDLDQDRPSTSKPRQRAMLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070693_1001997691	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	AMLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070665_1010050201	3300005548	Switchgrass Rhizosphere	GVMGKAQRFRLALLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070704_1005316112	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	IAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0070704_1006457812	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVLFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0068855_1013296282	3300005563	Corn Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSM
Ga0068864_1017334921	3300005618	Switchgrass Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0066903_1029039082	3300005764	Tropical Forest Soil	MGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0066903_1047936051	3300005764	Tropical Forest Soil	MLCFPFQLGGTFMSKAQRFPLGLLYGAIALLGAAYGVLEQPQAIDRFANSMNGVWLPLMKEILPFSLLLILALVVYGLFRAAGSVLERLNGVSIAAHSSLHTNYGKAWKQTV*
Ga0066903_1072309102	3300005764	Tropical Forest Soil	MQSKAQRFRLVLLYGAIAVVGAAYGVFEQPQAIDRLANTMRQSLPLMKEMLPFSFLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGK
Ga0066903_1074635602	3300005764	Tropical Forest Soil	MSKTQRFRLGLLYGAIAVLGAAYSIFEQPQAIDGLANSIKQSVPLTKEMLPFSLLLILALVVYGLFRAVGSILERLNGVSIAAHSSRHTNYGKAWKQTV*
Ga0068862_1006906171	3300005844	Switchgrass Rhizosphere	MSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0081455_103509241	3300005937	Tabebuia Heterophylla Rhizosphere	MLARLRGHESMSTAQRFRLGLFYAAIPVLGAAYGLFEQGVFEQQRSIDWLTYSMKELAPLSLPLILALVVYGLFRAAGLALERINGVSLAAHAT
Ga0075417_102348132	3300006049	Populus Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVHFHDCSAKG*
Ga0075432_106100961	3300006058	Populus Rhizosphere	MVRWLYWVPLMGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSLLLILALVVYGLFRAAGSVLERLNGIPLAAHSTLHTNYGKARTQTV*
Ga0070715_107798791	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	PAPNGTSPSRSCMTNRVLDLEPPPGRPTQRAMLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0070716_1008561902	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQT
Ga0070716_1012156502	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLGGKFMAKPVQLGLLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTN
Ga0070712_1002706692	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILSLVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0075421_1018879272	3300006845	Populus Rhizosphere	MVRWLYWVPLMGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSLLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQ
Ga0075425_1004444263	3300006854	Populus Rhizosphere	MSKAQRFRWLGLLYGAMAVLGAAYGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSLLLILALVVYGLFRAAGSVLERLNGVSIAAHSSLHTNYGKARKHIV*
Ga0075425_1006886312	3300006854	Populus Rhizosphere	MSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYSLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0075434_1004547791	3300006871	Populus Rhizosphere	AMAVLGAAYGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSLLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTV*
Ga0075424_1004453891	3300006904	Populus Rhizosphere	HDANSNLHKTRFQAQVNKTQLGGSMSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0075424_1021478002	3300006904	Populus Rhizosphere	LGLVYGAVFVSGAAYGLFEHQSDAIDWFTDSLPLIDEILPFSLLIILALVLIGLLRGAASVLETLNGISLAAHSTLHTNYGKARL*
Ga0075435_1014785442	3300007076	Populus Rhizosphere	SSKQANLANVLCFPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0105245_107173171	3300009098	Miscanthus Rhizosphere	SKPRQRAMLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNCGKGTHTNSVITSS*
Ga0105245_117197942	3300009098	Miscanthus Rhizosphere	QWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0105247_100508328	3300009101	Switchgrass Rhizosphere	VFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0111538_109447032	3300009156	Populus Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTVVVFGLYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0075423_114588372	3300009162	Populus Rhizosphere	MSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDCLTDSMKEISLPFMKEILPFSLLLILALVVYSLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0075423_119529601	3300009162	Populus Rhizosphere	IFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0105241_102090193	3300009174	Corn Rhizosphere	LPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0105242_102533941	3300009176	Miscanthus Rhizosphere	AVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0105248_102149903	3300009177	Switchgrass Rhizosphere	MLPLGGKFMAKPVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0105248_106320172	3300009177	Switchgrass Rhizosphere	MSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYATARTQTYESTPAITSSMMGHIQ*
Ga0105237_101384602	3300009545	Corn Rhizosphere	MSKAQWLGLLYGAIAVLGAAYAVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0126374_112451821	3300009792	Tropical Forest Soil	MPSKARTFRLVLLYGAIAVLGAAYGIFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKAWKQTV*
Ga0126370_101152091	3300010358	Tropical Forest Soil	VLLFGGIAVLGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAAGSVLERLNGVSVAAHSTLHTNYGKARTQTA*
Ga0126376_109759382	3300010359	Tropical Forest Soil	MLPLQLGGAFMQSKAQRFRLGLLYGAIALLGAAYGVFEQPQAIDRLSNSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSLHTNYGKARKQIM*
Ga0126372_107898191	3300010360	Tropical Forest Soil	AYGVLQQPQAIDRFANSMHGVWLPLMKEILPFSLLLILALAVYGLFRAAGSVLERLNGVSIAAHSSRHTNYGKARKQTV*
Ga0126378_119019542	3300010361	Tropical Forest Soil	MLAKCYASAPVEGLMPSKARTFRLVLLYGAIAVLGAAYGVFEQPQAIDRLANSMKQSLSLMKEMLPFSLLLILALVVYGLAVGLVLERLNGVSIAAHSSCHTNYGKAWKQT
Ga0126378_127733401	3300010361	Tropical Forest Soil	GPEKLKHKMNKTCSPNAMLPLQLGGAFMQSKAQRFRLGLLYGAIALLGAAYGVLEQPQAIDRFANSMNGVWLPLMKETLPFSLLLILALVVYGLFRAAGSVLERLNGVSIAAHSSLHTNYGKARKHIV*
Ga0126379_121071582	3300010366	Tropical Forest Soil	ARGRHNSNSNYTKRIRIWRRKAQAQDEQNMLAKCYASAPVGGAFMQSKAQRFRLVLLYGAIAVLGAAYGIFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKARKQTV*
Ga0134125_104123043	3300010371	Terrestrial Soil	MLPLGGKFMAKPQGGQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVLFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0134125_106828321	3300010371	Terrestrial Soil	MSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGNIK
Ga0126381_1006368002	3300010376	Tropical Forest Soil	MLCFRSSWGGVHAKQSATFRLVLLYGAIAVLGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKAWKQTV*
Ga0134124_108546341	3300010397	Terrestrial Soil	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHRNYGKGTHTNSVITSS*
Ga0126383_103316613	3300010398	Tropical Forest Soil	MSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV*
Ga0126383_127366261	3300010398	Tropical Forest Soil	KAQAQDEQNMFAKCYASAPVGGAFMQSKAQRFRLVLLYGAIAVLGAAYGIFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKAWKQTV*
Ga0126383_132463151	3300010398	Tropical Forest Soil	MSKTQRFRLGLLYGAIAVLGAAYGVFEQPPAIDRLATSMKQSLPLMKEMLPVFLLLILALVVYGLFRVAGSVLERLNGVSIAAHSSRHTNYGKAW
Ga0134127_102819311	3300010399	Terrestrial Soil	MSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAANSVLERLNGISLAAHSTLHTNYGKAGTQTV*
Ga0150985_1118767652	3300012212	Avena Fatua Rhizosphere	VLNCAAGERGHIMSTAQRFRLGLLYAAMAVLGAAYGVFEQQQAIDWLTDSMKDVSLPLMKEILPLSLPLILALVVYCLFRAARSVLERLNGVSLAAHATLHTNYGKAS*
Ga0150984_1045899961	3300012469	Avena Fatua Rhizosphere	MAVLGAAYGVFEQQQAIDWLTDSMKDVSLPLMKEILPLSLPLILALVVYCLFRDARSVLERLNGVSLAAHATLHTNYGKAS*
Ga0157289_101400661	3300012903	Soil	GAMAVFGAAYGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0157308_101243041	3300012910	Soil	LYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0157301_103820261	3300012911	Soil	TLAARQTHSWLEGSEPRQVLCFPWGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKRTHTNSVITSS*
Ga0126369_108376433	3300012971	Tropical Forest Soil	AIAVLGAAYGVFKQPEAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKARKQTV*
Ga0126369_118746492	3300012971	Tropical Forest Soil	CRLGLLYGAIAAWCRIWGVYEQRGTIDWLADFMKQVSLLLLKEIFPFSLLLIFALVVYGLFRAAASVLERLNGISLAAHSTLHTNYRKARTYTV*
Ga0157371_116068401	3300013102	Corn Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKTAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0157370_118842521	3300013104	Corn Rhizosphere	HAMLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ*
Ga0157369_115978781	3300013105	Corn Rhizosphere	AMLPLGGKFMAKPQGVQLGLLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0157377_102671231	3300014745	Miscanthus Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDSVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS*
Ga0132255_1035182371	3300015374	Arabidopsis Rhizosphere	MSKAQRFRWLGLLYGAMAVLGAAYGVFEQQHAVDRLTNSMKEVSLPLIKEILPFSLLLILALVVYGLFRAAGSVLERLNGISLAALSTLHTNHGKARTQTV*
Ga0182036_110503341	3300016270	Soil	KPKARARFMPSKARTFRLVLLYGGIAVLGAAYGIFQQPQAIDKLANSTKQSLPLMKEMLPFSLLLILALVGYGLFRAVRSVREQLNGASLAALGSLQTNLRLRR
Ga0182035_119016981	3300016341	Soil	SVLCFPLRGAFMQSEAQRFWLVLLYGAIAVLGAAYGVFAQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKARKQTV
Ga0182034_112703452	3300016371	Soil	PSAVRGAFMSTAQRFRLGLLYGAIAVLGAAYGVFEQPQAIGRLANSMRQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKAQKQTV
Ga0182040_106831593	3300016387	Soil	MPSKARTFRLVLLYGAIAVLGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVGYGLFRAVRSVREQLNGASLAALGSLQTNLRLRR
Ga0182039_120184671	3300016422	Soil	MLAKCYASAPVGGFMPSKARTFRLVLLYGAIAVLGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVGYGLFRAVRSVREQLNGASLAALGSLQTNLRLRR
Ga0182038_109367262	3300016445	Soil	MSKAQRFRLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTG
Ga0173481_100199753	3300019356	Soil	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHI
Ga0173482_100222374	3300019361	Soil	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0173482_101183771	3300019361	Soil	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTV
Ga0206350_110906981	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	LLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0126371_105480491	3300021560	Tropical Forest Soil	MPSKARTFRLVLLYGAIAVVGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKARKQTV
Ga0126371_112386382	3300021560	Tropical Forest Soil	MGKAQRFRLGLVYGAIAVLGAAYGIFQHQQAIDWVTDSMKGLSLPLIKEASPFCLLLILALVIYGLFRVAGSLLEWLNGISLAAHNTLHTNYGKAR
Ga0126371_132453011	3300021560	Tropical Forest Soil	MSKTQRFRLGLLYGAIAVLGAAYSIFEQPQAIDRLANSMKQSLPLMKEMLPSALLLILALLVYGLFRTAGSVLERLNGVSIAAHSSLHTNYGIGNK
Ga0224712_103200642	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	AVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0247799_10159833	3300023072	Soil	LGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ
Ga0247796_10096722	3300023261	Soil	MSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTYESTPAITSSMMGHIQ
Ga0209431_103038294	3300025313	Soil	MTTAQRFRLGLFFAAMPVLGAAYGVFEQQRAIDSLTHSIKEVMPWLIYSMKEVVLLSLPLILALVVYGLFHAAGSVLERLNGVSLAAHATLHVNYGKASPTPTV
Ga0207710_101104843	3300025900	Switchgrass Rhizosphere	LLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ
Ga0207688_105870991	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQ
Ga0207671_101094453	3300025914	Corn Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYAVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHI
Ga0207693_101414242	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLPPVGLGDGFMSKAQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILSLVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHI
Ga0207693_109000101	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTSVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207663_104065171	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RGAFMSKAQRFWLGLFYGAVFALGAAYGIFEHQKQAIDWLTDSLPLIKEILPFSLLVILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHIQ
Ga0207681_116694801	3300025923	Switchgrass Rhizosphere	PLGGKFMAKPVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVLFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207665_110163273	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSKAQKFLLALLYGAMPVLGAAYGLFEQPQAIDWLTDSMKEISLPFMKEILPFSLLLILALVVYGLFRAAGSVLEWLNGVSLAAHSTLHTNYGKARTQTV
Ga0207691_111674432	3300025940	Miscanthus Rhizosphere	MLPPVGLGDGFMSKTQWLGLLYGAIAVLGAAYGVFGHQHAVADSMKEVSLPLIKEILPFSFLLILALVVYGLFRAAGSVLERLNGISLAAHSTLHTNYGKARTQTYESTPAITSSMMGHI
Ga0207667_117060222	3300025949	Corn Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKTAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207712_105837612	3300025961	Switchgrass Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207668_106916041	3300025972	Switchgrass Rhizosphere	DFPRLIVRGDLDQDRPSTSKPRQRAMLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207640_110183751	3300025981	Corn Rhizosphere	DQDRPSTSKPRQRAMLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0207678_101872122	3300026067	Corn Rhizosphere	MLPLGGKFMAKPQGVQLGLLYGAVFVLGAASAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNCGKGTHTNSVITSS
Ga0207676_125972581	3300026095	Switchgrass Rhizosphere	LLYGAVFVLGAVSAVFEHQKEAIDWVTDSLPLIEEILPFSLLLMLTLVVFALYRAAGSVLERLNGISLAAHNALHTNYGKGTHTNSVITSS
Ga0256865_11982192	3300027657	Soil	TMTTAQRFRLGLFFAAMPVLGAAYGVFEQQRAIDSLTHSIKEVMPWLIYSMKEVVLLSLPLILALVVYGLFHAAGSVLERLNGVSLAAHATLHVNYGKASPTPTV
Ga0306917_105201442	3300031719	Soil	MSKAQRFRLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0318501_101977102	3300031736	Soil	VFILGAGYGVFEHQKQAIDWLTHSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0310917_102018153	3300031833	Soil	MSKAQRFRLRLFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0306921_114144021	3300031912	Soil	MSKAQRFRLRLFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTG
Ga0310913_100941724	3300031945	Soil	MSKAQRFRLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLLKEILPFFLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0310910_101048884	3300031946	Soil	MSKAQRFRLRLFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLLKEILPFFLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTG
Ga0310909_108049441	3300031947	Soil	GGAFMSKAQKFRLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0310911_103284511	3300032035	Soil	RLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLLKEILPFFLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0318513_105710351	3300032065	Soil	AQRFRLGFFYGAVFILGAAYGVFEHQKQAIDWLTDSLPLIKEILPFSLLLILALVVYGLFRAAGLVLERLNGISLAAHSALHTNYGKARTQTV
Ga0306924_104067481	3300032076	Soil	MPSKARTFRLVLLYGGIAVLGAAYGIFEQPQAIDKLANSTKQSLPLMKEMLPFSLLLILALVGYGLFRAVRSVREQLNGASLAALGSLQTNLRLRR
Ga0306920_1020150492	3300032261	Soil	MPSKARTFRLVLLYGAIAVLGAAYGVFEQPQAIDRLANSMKQSLPLMKEMLPFSLLLILALVVYGLFRAVGLVLERLNGVSIAAHSSRHTNYGKARKQTV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057699

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences