NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F058018

Metagenome / Metatranscriptome Family F058018

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F058018
Family Type Metagenome / Metatranscriptome
Number of Sequences 135
Average Sequence Length 57 residues
Representative Sequence MSPPGLSPGVQSIGDKQRALQQGLADKDKRHILQKLTQIGGVQRYKDELRQALAGT
Number of Associated Samples 118
Number of Associated Scaffolds 135

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.26 %
% of genes near scaffold ends (potentially truncated) 75.56 %
% of genes from short scaffolds (< 2000 bps) 91.11 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.778 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(27.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.259 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.43%    β-sheet: 0.00%    Coil/Unstructured: 53.57%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 135 Family Scaffolds
PF01609DDE_Tnp_1 6.67
PF08388GIIM 2.22
PF08028Acyl-CoA_dh_2 1.48
PF02397Bac_transf 1.48
PF12762DDE_Tnp_IS1595 1.48
PF01425Amidase 1.48
PF08401ArdcN 0.74
PF00582Usp 0.74
PF13359DDE_Tnp_4 0.74
PF04930FUN14 0.74
PF02922CBM_48 0.74
PF10129OpgC_C 0.74
PF13612DDE_Tnp_1_3 0.74
PF00011HSP20 0.74
PF05168HEPN 0.74
PF02371Transposase_20 0.74
PF04986Y2_Tnp 0.74
PF00211Guanylate_cyc 0.74
PF07592DDE_Tnp_ISAZ013 0.74
PF07969Amidohydro_3 0.74
PF03328HpcH_HpaI 0.74
PF13546DDE_5 0.74
PF00158Sigma54_activat 0.74
PF13271DUF4062 0.74
PF05225HTH_psq 0.74
PF01526DDE_Tnp_Tn3 0.74
PF13700DUF4158 0.74
PF13649Methyltransf_25 0.74
PF12704MacB_PCD 0.74
PF01548DEDD_Tnp_IS110 0.74
PF13676TIR_2 0.74
PF07690MFS_1 0.74
PF09832DUF2059 0.74
PF01797Y1_Tnp 0.74
PF02774Semialdhyde_dhC 0.74
PF01844HNH 0.74
PF02514CobN-Mg_chel 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 135 Family Scaffolds
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 6.67
COG3293TransposaseMobilome: prophages, transposons [X] 6.67
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 6.67
COG5421TransposaseMobilome: prophages, transposons [X] 6.67
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 6.67
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 6.67
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 1.48
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 1.48
COG2148Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)Cell wall/membrane/envelope biogenesis [M] 1.48
COG3547TransposaseMobilome: prophages, transposons [X] 1.48
COG0002N-acetyl-gamma-glutamylphosphate reductaseAmino acid transport and metabolism [E] 0.74
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.74
COG0136Aspartate-semialdehyde dehydrogenaseAmino acid transport and metabolism [E] 0.74
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.74
COG1429Cobalamin biosynthesis protein CobN, Mg-chelataseCoenzyme transport and metabolism [H] 0.74
COG1895HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.74
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.74
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.74
COG2250HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.74
COG2301Citrate lyase beta subunitCarbohydrate transport and metabolism [G] 0.74
COG2383Uncharacterized membrane protein, Fun14 familyFunction unknown [S] 0.74
COG38362-keto-3-deoxy-L-rhamnonate aldolase RhmACarbohydrate transport and metabolism [G] 0.74
COG4227Antirestriction protein ArdCReplication, recombination and repair [L] 0.74
COG4644Transposase and inactivated derivatives, TnpA familyMobilome: prophages, transposons [X] 0.74

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms58.52 %
UnclassifiedrootN/A41.48 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886007|SwRhRL2b_contig_3496999All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera946Open in IMG/M
3300000580|AF_2010_repII_A01DRAFT_1003238All Organisms → cellular organisms → Bacteria2633Open in IMG/M
3300000955|JGI1027J12803_107496492All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300002562|JGI25382J37095_10185310All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300003993|Ga0055468_10234854All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis573Open in IMG/M
3300005167|Ga0066672_10393574Not Available906Open in IMG/M
3300005167|Ga0066672_10517427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria774Open in IMG/M
3300005172|Ga0066683_10605124Not Available663Open in IMG/M
3300005177|Ga0066690_10231734Not Available1236Open in IMG/M
3300005295|Ga0065707_10610821All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium684Open in IMG/M
3300005332|Ga0066388_104775030Not Available689Open in IMG/M
3300005441|Ga0070700_100381132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1055Open in IMG/M
3300005445|Ga0070708_100324738Not Available1450Open in IMG/M
3300005560|Ga0066670_10685047Not Available621Open in IMG/M
3300005569|Ga0066705_10919041Not Available519Open in IMG/M
3300005574|Ga0066694_10579162All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis523Open in IMG/M
3300005598|Ga0066706_10332143All Organisms → cellular organisms → Bacteria1202Open in IMG/M
3300005713|Ga0066905_101245546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria667Open in IMG/M
3300006796|Ga0066665_10415701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1111Open in IMG/M
3300006845|Ga0075421_100005603All Organisms → cellular organisms → Bacteria15212Open in IMG/M
3300006845|Ga0075421_100408031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1630Open in IMG/M
3300006846|Ga0075430_101291753All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella variicola600Open in IMG/M
3300006852|Ga0075433_11134147Not Available679Open in IMG/M
3300006852|Ga0075433_11809871Not Available525Open in IMG/M
3300006853|Ga0075420_101142622All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300006854|Ga0075425_102185568All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis617Open in IMG/M
3300006876|Ga0079217_11729406All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300006880|Ga0075429_101908885Not Available515Open in IMG/M
3300006903|Ga0075426_10525196All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8880Open in IMG/M
3300006969|Ga0075419_10105413All Organisms → cellular organisms → Bacteria1815Open in IMG/M
3300006969|Ga0075419_11299753All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300007258|Ga0099793_10440695All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium643Open in IMG/M
3300009038|Ga0099829_10692628All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont847Open in IMG/M
3300009089|Ga0099828_10039172All Organisms → cellular organisms → Bacteria3872Open in IMG/M
3300009089|Ga0099828_11332152All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300009089|Ga0099828_11915686All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300009090|Ga0099827_10274332Not Available1422Open in IMG/M
3300009090|Ga0099827_10653260Not Available908Open in IMG/M
3300009100|Ga0075418_10744239All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1058Open in IMG/M
3300009147|Ga0114129_10585583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1447Open in IMG/M
3300009147|Ga0114129_11649238Not Available784Open in IMG/M
3300009156|Ga0111538_10611659All Organisms → cellular organisms → Bacteria1382Open in IMG/M
3300009162|Ga0075423_13100485Not Available509Open in IMG/M
3300009444|Ga0114945_10368376All Organisms → cellular organisms → Bacteria854Open in IMG/M
3300009515|Ga0129286_10204238Not Available668Open in IMG/M
3300009553|Ga0105249_10466214All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1304Open in IMG/M
3300009553|Ga0105249_12055931Not Available644Open in IMG/M
3300009691|Ga0114944_1013391All Organisms → cellular organisms → Bacteria2759Open in IMG/M
3300009691|Ga0114944_1163110All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis879Open in IMG/M
3300009801|Ga0105056_1077597Not Available502Open in IMG/M
3300009812|Ga0105067_1014498All Organisms → cellular organisms → Bacteria1039Open in IMG/M
3300009821|Ga0105064_1104475Not Available582Open in IMG/M
3300009822|Ga0105066_1107631Not Available619Open in IMG/M
3300009823|Ga0105078_1046082Not Available569Open in IMG/M
3300009823|Ga0105078_1065780Not Available505Open in IMG/M
3300010042|Ga0126314_11168185Not Available574Open in IMG/M
3300010043|Ga0126380_11990278All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium531Open in IMG/M
3300010046|Ga0126384_11546327All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300010106|Ga0127472_1118559Not Available729Open in IMG/M
3300010323|Ga0134086_10465991Not Available518Open in IMG/M
3300010336|Ga0134071_10327645All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis771Open in IMG/M
3300010359|Ga0126376_11235997All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria764Open in IMG/M
3300010359|Ga0126376_12166563All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300010362|Ga0126377_13176026Not Available531Open in IMG/M
3300010399|Ga0134127_12885987All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300010401|Ga0134121_13123651Not Available511Open in IMG/M
3300011119|Ga0105246_11626673Not Available611Open in IMG/M
3300011269|Ga0137392_11428595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales551Open in IMG/M
3300011271|Ga0137393_10515778All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300012022|Ga0120191_10098482All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis600Open in IMG/M
3300012199|Ga0137383_10222437All Organisms → cellular organisms → Bacteria1384Open in IMG/M
3300012201|Ga0137365_10265085All Organisms → cellular organisms → Bacteria → Proteobacteria1276Open in IMG/M
3300012203|Ga0137399_10553843Not Available966Open in IMG/M
3300012204|Ga0137374_10657450Not Available792Open in IMG/M
3300012205|Ga0137362_10868469All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300012206|Ga0137380_10696036All Organisms → cellular organisms → Bacteria → PVC group883Open in IMG/M
3300012209|Ga0137379_10299827All Organisms → cellular organisms → Bacteria1518Open in IMG/M
3300012210|Ga0137378_10989185Not Available755Open in IMG/M
3300012285|Ga0137370_10982924Not Available520Open in IMG/M
3300012351|Ga0137386_10847979Not Available656Open in IMG/M
3300012355|Ga0137369_10911353All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300012359|Ga0137385_10182605All Organisms → cellular organisms → Bacteria1837Open in IMG/M
3300012363|Ga0137390_11204082All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans705Open in IMG/M
3300012896|Ga0157303_10221868Not Available559Open in IMG/M
3300012925|Ga0137419_10190147Not Available1513Open in IMG/M
3300012930|Ga0137407_11346679Not Available678Open in IMG/M
3300012941|Ga0162652_100103020All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria513Open in IMG/M
3300012944|Ga0137410_10444209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_41052Open in IMG/M
3300012948|Ga0126375_10605458All Organisms → cellular organisms → Bacteria → Proteobacteria837Open in IMG/M
3300012971|Ga0126369_13334957All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium526Open in IMG/M
3300014267|Ga0075313_1030900All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca1228Open in IMG/M
3300014302|Ga0075310_1038557All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300014310|Ga0075331_1146981Not Available574Open in IMG/M
3300016404|Ga0182037_11326527All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300017656|Ga0134112_10339852Not Available610Open in IMG/M
3300018052|Ga0184638_1202711Not Available697Open in IMG/M
3300018076|Ga0184609_10200173Not Available930Open in IMG/M
3300018076|Ga0184609_10332478Not Available710Open in IMG/M
3300018084|Ga0184629_10228048Not Available969Open in IMG/M
3300018084|Ga0184629_10717678Not Available502Open in IMG/M
3300018433|Ga0066667_11673981Not Available570Open in IMG/M
3300019238|Ga0180112_1032686All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis2172Open in IMG/M
3300020214|Ga0194132_10155696Not Available1350Open in IMG/M
3300021086|Ga0179596_10454947Not Available648Open in IMG/M
3300022413|Ga0224508_10056368All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium2673Open in IMG/M
3300022563|Ga0212128_10285879All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis1037Open in IMG/M
3300022563|Ga0212128_10389616All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300026062|Ga0208654_1049569Not Available527Open in IMG/M
3300026480|Ga0257177_1064069All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300027490|Ga0209899_1069860All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300027490|Ga0209899_1078473Not Available652Open in IMG/M
3300027647|Ga0214468_1004438All Organisms → cellular organisms → Bacteria → Proteobacteria4261Open in IMG/M
3300027873|Ga0209814_10034661Not Available2088Open in IMG/M
3300027880|Ga0209481_10236539All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis918Open in IMG/M
3300027910|Ga0209583_10093336All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella factor1147Open in IMG/M
3300027952|Ga0209889_1016692All Organisms → cellular organisms → Bacteria1711Open in IMG/M
3300027952|Ga0209889_1116826Not Available527Open in IMG/M
3300030514|Ga0268253_10388353Not Available503Open in IMG/M
3300030619|Ga0268386_10074903All Organisms → cellular organisms → Bacteria2644Open in IMG/M
3300030829|Ga0308203_1089315Not Available516Open in IMG/M
3300031421|Ga0308194_10146407All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium724Open in IMG/M
3300031713|Ga0318496_10293736All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300031744|Ga0306918_10068048All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis2433Open in IMG/M
3300031747|Ga0318502_10881265Not Available544Open in IMG/M
3300031768|Ga0318509_10812978Not Available517Open in IMG/M
3300031820|Ga0307473_10500670All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium820Open in IMG/M
3300031943|Ga0310885_10154259All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Salinibacter → Salinibacter ruber1101Open in IMG/M
3300031947|Ga0310909_10334236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales1271Open in IMG/M
3300031954|Ga0306926_10531856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1442Open in IMG/M
3300032001|Ga0306922_11139895All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium797Open in IMG/M
3300032017|Ga0310899_10030460All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1836Open in IMG/M
3300032055|Ga0318575_10696946Not Available514Open in IMG/M
3300032063|Ga0318504_10344786All Organisms → cellular organisms → Bacteria707Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere13.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.41%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand7.41%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.19%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs3.70%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.96%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.96%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.48%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.48%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.74%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.74%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.74%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.74%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.74%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.74%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.74%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.74%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.74%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.74%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.74%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.74%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.74%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886007Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300003993Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009444Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3EnvironmentalOpen in IMG/M
3300009515Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009691Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2EnvironmentalOpen in IMG/M
3300009801Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30EnvironmentalOpen in IMG/M
3300009812Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60EnvironmentalOpen in IMG/M
3300009821Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30EnvironmentalOpen in IMG/M
3300009822Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40EnvironmentalOpen in IMG/M
3300009823Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010106Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012493Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012941Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014267Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1EnvironmentalOpen in IMG/M
3300014302Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2EnvironmentalOpen in IMG/M
3300014310Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019238Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020214Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80mEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022413Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300026062Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026480Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-BEnvironmentalOpen in IMG/M
3300027490Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027647Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeqEnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027952Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300030514Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300030619Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)EnvironmentalOpen in IMG/M
3300030829Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
SwRhRL2b_0397.000020002162886007Switchgrass RhizosphereMSPPGLSPGVQSIGDKQRALRQSLADTEKRHILQQLSQIGGVQHYKDELRQALAGT
AF_2010_repII_A01DRAFT_100323813300000580Forest SoilMVQGLSLGSQSIGDKQRALQQGLADQAKRQILQKLTQIGGVQRYKEELRQALTGS*
JGI1027J12803_10749649233300000955SoilMSPPGLSPGVQSIGDKQRALRQSLADTEKRHILQQLSQIGGVQHYKDELRQALAGT*
JGI25382J37095_1018531023300002562Grasslands SoilSAGVTSLGDKQRQLQQLLANQEKRRVLQKLTQIGGVQRYKDELRQALADT*
Ga0055468_1023485423300003993Natural And Restored WetlandsMSPPGVSADGESLGGKQRQLQRFLDRKEKRRILQKLTQIGGVQRYKDELRQALADV*
Ga0066672_1039357413300005167SoilMSPPGGAAGVTRLRDPQRQLPQLLANQAPRRVLQQLTQIGGGQREKDALRQALAGA
Ga0066672_1051742723300005167SoilAYILLHMAPPGLSPGVQSIGGKQRALQQSLADQEKRHILQKLTQIGGVQRYTDELRQALAGT*
Ga0066683_1060512413300005172SoilAYILLHMSPPGLSPGVQSIGDKQRALQQGLADKDKRHILQQLTQIGGVQRYKDELRQALAGT*
Ga0066690_1023173413300005177SoilLSMSPPGVSAGAQSLGDKQRQLPQLLENQEKRRGLQQLTQIGGVQRYKDALRQALADV*
Ga0065707_1061082113300005295Switchgrass RhizospherePGVSADVPSLGDAQRQLQQFLANQEKRRILQKLTQIGGVQRYKDELRQALADI*
Ga0066388_10477503023300005332Tropical Forest SoilMSPPGVSEDVKSLGDKQRQLRQLFANQEKHRVLQKLSQIGGVQRYKDALRQALADA*
Ga0070700_10038113223300005441Corn, Switchgrass And Miscanthus RhizosphereMRKNLPLKGLSPGVQSIGDKQRALQQGLADKEKRHILQKLTQIGGVQRYKDELRQALAGA
Ga0070708_10032473823300005445Corn, Switchgrass And Miscanthus RhizosphereVYCAYILLHMSPLGLSPESQSVGDRQRALQQGLADQEKRRILQKLTQIGGVQRYKDELRQALADA*
Ga0066670_1068504723300005560SoilVLHMSPPGRSPGAQSIGDTQRALQQGLADKETRRLLQQLPHIGGGQRYKEEGQQALAAI*
Ga0066705_1091904123300005569SoilMSPPGLSSGAQSIGDKQRALQQGLADKEKRQILQKLSQIGGVQRYKDELRQALAGI*
Ga0066694_1057916213300005574SoilMAPPGVSAGAKSLSDTQRRLQQLLANPEKRRVLQQLTQMGGVQRYQDELRQALTGA*
Ga0066706_1033214323300005598SoilMSQVHWGYGAYMLLSMSPPGVAAGVTSLGDAPRQLQQLLANQEKRRILQPLTQIGGVQRDKDELRQALADA*
Ga0066905_10124554623300005713Tropical Forest SoilILLSMSPPGVSEDVKSLGDKQRQLRQLFANQEKRRVLQKLSQIGVVQRYKDALRQALADA
Ga0066665_1041570113300006796SoilGVPQDVKSVGERQRKIQELLAHKEKRRVLQQFTQIHGVERYKDELRQALVGT*
Ga0075421_10000560313300006845Populus RhizosphereLLHLSPPGVSAEVKSLGDTQRQLQHVLANNEKRRVLQKLTQIGGVQRYKDELRQALAAA*
Ga0075421_10040803133300006845Populus RhizosphereMSPPGVPPAVKGLGDRQRQLQRVLANKEKRRVLQQLTQIGGVQRYKDELRQALAGA*
Ga0075430_10129175323300006846Populus RhizosphereLSPGAQRIGDKQRALQQGLANTEKRHILQKLSQIGGVQRYQGELRQALAST*
Ga0075433_1113414713300006852Populus RhizosphereAYILLHMSPPGLSPGVHSIGDKQRALQQGLADKEKRHILQKLTQIGGVQRYKDELRQALAGI*
Ga0075433_1180987113300006852Populus RhizosphereKSLGDKQRQLQQLLGNQEKRRILQQLTQMGGVQRYTDELRQALAAA*
Ga0075420_10114262213300006853Populus RhizosphereLSPPGVSAEVKSLGDTQRQLQHVLANNEKRRVLQKLTQIGGVQRYKDELRQALAAA*
Ga0075425_10218556813300006854Populus RhizosphereMSPPGVPPAVKGLGDRQRQLQRVLANKEKRRVLQQLTQIGGVQRYKDELRQALEGA*
Ga0079217_1172940623300006876Agricultural SoilYILLHMSPPGLSPESQSVGDKQRALQQGLADQEKRHILQKLTQIGGVQRYKDELRQALAAA*
Ga0075429_10190888523300006880Populus RhizosphereLLHMSPPGLSPGAQSIGDKQRALQQGLADKEKRQILQKLSQIGGVQCYKDELRQALAGIGCLESQV*
Ga0075426_1052519613300006903Populus RhizosphereMSPPGLSPGVQSIGDKQRALQQGLADKDKRHILQKLTQIGGVQRYKDELRQALAGT*
Ga0075419_1010541343300006969Populus RhizosphereLHLSPPGVSAEVKSLGDTQRQLQHVLANNEKRRVLQKLTQIGGVQRYKDELRQALAAA*
Ga0075419_1129975333300006969Populus RhizospherePPGVSVEAKSLGDKQRQLQRVLENQGQRRVIQKLTQIGGVERYKDELRQALADA*
Ga0099793_1044069513300007258Vadose Zone SoilMVQGLSPGCQSIGDKQRTLQQGLVDKEKRQILQKLTQIGGVQRYK
Ga0099829_1069262823300009038Vadose Zone SoilGVSPDVKSLGDKQRQLQRVLANKEKRRVLQKLTQIGGVQRYKDELRQALADA*
Ga0099828_1003917273300009089Vadose Zone SoilLLLHMSPPGVPPEVKSIGDKQRKVQQCLEHKEKRRILQKLTQIGGVQRYKDELRQALVDT
Ga0099828_1133215223300009089Vadose Zone SoilYCASLLLHMSPPGVPPEVKSIGDKQRKVQQCLGHKEKRRILQKLSQIGGVERYKDELRQALADT*
Ga0099828_1191568623300009089Vadose Zone SoilAYILLHMSPPGLSPGVQSLGDKQRALQQGLADQEKRHILQKLTHIGGVQRYKAELRQALAGT*
Ga0099827_1027433213300009090Vadose Zone SoilHMSPPGVPPEVKGIGDKQRKVQQCLGHKEKRRILQQLSQIGGVERYKDELRQALADA*
Ga0099827_1065326013300009090Vadose Zone SoilAYILLHMSPPGLSPGVQSIGDKQRALQQGLADTEKRHILQQLSQIGGVQRYKDALRQALTGT*
Ga0075418_1074423933300009100Populus RhizosphereSYILLHLSPPGVSAEVKSLGDTQRQLQHVLANNEKRRVLQKLTQIGGVQRYKDELRQALAAA*
Ga0114129_1058558333300009147Populus RhizosphereMSPPGLAPESQSVGDRQRALHQGLANQEKRHILQKLTQIGGVQRYKDELRQALAAA*
Ga0114129_1164923813300009147Populus RhizosphereGAQSIGDKQRALQQGLADKEKRQILQKLSQIGGVQCYKDELRQALAGIGCLESQV*
Ga0111538_1061165913300009156Populus RhizosphereMLLSMSPPGVSAGVKRLGDQQRQLQPHLENHKKRRILQPLTQIGGMQRYTDELRQALADI
Ga0075423_1310048513300009162Populus RhizospherePPGLSPGAQSIGDKQRALQQGLADQEKRHILQKLTQIGGVQRYKDELRQALAGIGCLESQV*
Ga0114945_1036837623300009444Thermal SpringsMAPPGVPPDITSIGEKQRHIQQLLDNKAKRRVLQKLTQIGGVERYKDELRQALTGS*
Ga0129286_1020423823300009515SedimentPGLSGEAKSLGDKQRQLQNVLEHKEKRRVLQKLTQIGGVQRYKDELRQALADV*
Ga0105249_1046621413300009553Switchgrass RhizosphereLHMSPPGFSPGAQSIGDKQRALQQGLADKEKRQILQKLTQIGGVQRYKDELRQALAGT*
Ga0105249_1205593123300009553Switchgrass RhizosphereLLHMSPPGLAPESQSVGDRQRALQQGLADQEKRHILQKLTQIGGVQRYKDELRQALAAA*
Ga0114944_101339113300009691Thermal SpringsMAPPGVPPDITSIGEKQRHIQQLLDNKANRRVRQQLTQIGGVERYKDELRQALTGS*
Ga0114944_116311023300009691Thermal SpringsMSPPGVPPEVKSVGEKQRHIQKLLENKEKRRVLQKLTHIGGIERYKGELQQALAGG*
Ga0105056_107759723300009801Groundwater SandLLHMSPPGVPADVKSIGEKQRHIHTLLAKKEKRRVLQKLTQIGGVERYKDELRQALTGT*
Ga0105067_101449823300009812Groundwater SandAYILLHMSPPGLSPGNQNLGDKQRALQQGLADTEKRHILQKLTQIGGVQRYKNELRQALAGT*
Ga0105064_110447513300009821Groundwater SandYCAYLLLSMSPPGVPPEVKSIGDKQRKVQQYLEHKEKRRILQKLSQIGGVERYKDELRQALADA*
Ga0105066_110763123300009822Groundwater SandMSPPGVPPDVKAVGDKQRHIQQCLANKGKRHILQKLRQIGGVERYKDELRQALADT*
Ga0105078_104608213300009823Groundwater SandLLHMPPPGLSPRVHSIGDKQRALQQGLADTAKRHILQKLTQIGGVQRYKDELRQALAGP*
Ga0105078_106578013300009823Groundwater SandPPGVSPDTKSLGAKQRQLQQLLADKEKRRVLQKLTQIGGIERYKDELRQALEAA*
Ga0126314_1116818523300010042Serpentine SoilLSPGAQSIGDKQRALQQGLADKEKRQILQKLTQIGGVQRYKDELRQALAGI*
Ga0126380_1199027813300010043Tropical Forest SoilYMLLHMAPPGLSPGAQSIGDKQRALQQGLADKEKRQILQKLTQIGGVQRYKEELRQALAGI*
Ga0126384_1154632713300010046Tropical Forest SoilMSTPGLSIGNQSIGDKQRALQQGLADQEKRHILQKLTQIGGVQRYKDELRQALAGT*
Ga0127472_111855913300010106Grasslands SoilMAPPGLSPGAQSIGDKQRALQQGLADKEKRQILQKLTQIGGVQRYKDELRQALVGT*
Ga0134086_1046599113300010323Grasslands SoilLHLSPPGVSAEGKSLGDTQRQLQHVLANHEKRCVLQKLTQIGGVERYKDELRQALTGT*
Ga0134071_1032764523300010336Grasslands SoilMAPPGVSAGAKSLGDKQRQLQHLLENQEKRRVLQQLTQIGGVQRYTDELRQALADA*
Ga0126376_1123599713300010359Tropical Forest SoilSTGAKSLGAKQRQLQQRLENQEKRRILQRLSQIGGVQRYTDELRQALAEA*
Ga0126376_1216656313300010359Tropical Forest SoilILLSMSPPGVSAGITSLGDIQRQLQQLLANQEKRRILQKLTQIGGVQRYQDELRRALADA
Ga0126377_1317602623300010362Tropical Forest SoilLLSLAPPGVSADAKSLGDKQRQLQQCLENQKKRRVLQQLTQIGGVRRYTDELRQALADA*
Ga0134127_1288598723300010399Terrestrial SoilMAPPGLSPGAQSIGEKQRALQQGLAAREKRQILQKLTQIGGVQRYTEELRQALAGI*
Ga0134121_1312365113300010401Terrestrial SoilHMSPPGLSPGGQSIGDKQRALQQGLADREKRHILQRLTQIGGVQRYKDELRQALAGT*
Ga0105246_1162667323300011119Miscanthus RhizosphereSPPGVDDMVGSLCDKRLHLQKYLDHKEKRGILQKLTQIGGVQRYKDELRQALADG*
Ga0137392_1142859523300011269Vadose Zone SoilYMSPPGVSADVKSLGDKQRQLQQLFENQEKRRILQQLTQMGGVQRYTDELRQALAAA*
Ga0137393_1051577823300011271Vadose Zone SoilYSAYILLHMSPPGLSPGVQSIGDKQRALQQGLADKEKRHILQKLTQIGGVQRYKAELRQALAGT*
Ga0120191_1009848223300012022TerrestrialMSPPGLSPESKSVGDRQRALQQGLANQEKRHILQKLSQIGGVQRYKDELRQALADA*
Ga0137383_1022243723300012199Vadose Zone SoilLSPGVQSLGDKQRALQQGLADKEKRHILQKLTQIGGVERYKAELRQALAGT*
Ga0137365_1026508513300012201Vadose Zone SoilPGLSPGVQSIGDKQRALQQGLADKDKRHILQQLTQIGGVQRYKDELRQALAGT*
Ga0137399_1055384313300012203Vadose Zone SoilLSPPGVSAEVKSLGDTQRQLQHVLANNEKRRVLQKLAQIGGVQRYKDELRQALAAA*
Ga0137374_1065745023300012204Vadose Zone SoilMSPPGVPADVKSIGEKQRHIHTLLAKKEKRRVLQKLTQIGGVERYKDELRQALTGI*
Ga0137362_1086846913300012205Vadose Zone SoilHMSPPGLAPGAQSIGDKQRALQQGLADAEKRHILQKLTQIGGVQRYKNELRQALAGT*
Ga0137380_1069603623300012206Vadose Zone SoilSPPGVPQDVKSVGERQRKIQELLAHKEKRRVLQQLTQIHGVERYKDELRQALVGT*
Ga0137379_1029982723300012209Vadose Zone SoilVADAVIEALLHMSPPGLSPGSQSIGDKQRALQQGLADKEKRQILQKLTQIGGVPRYKDELRQALAGT*
Ga0137378_1098918523300012210Vadose Zone SoilSPPGVSAEVKSLGDTKRQLQHVLANNEKRRVLQQLTQIGGVQRYKDELRQALAAA*
Ga0137370_1098292413300012285Vadose Zone SoilILLHLSPPGVSAEGKGLGDKQRQLQQVLDNNEKRRVLQRLTQIGGVQRYKDELRQALAAA
Ga0137386_1084797923300012351Vadose Zone SoilPGLSPGVQSIGDKQRALQQGLADKEKRHILQQLTQIGGVQRYKDELRQALAGS*
Ga0137369_1091135313300012355Vadose Zone SoilPGVPADVKSIGEKQRHIHTLLAKKEKRRVLQKLTQIGWVERYKDELRQALTGI*
Ga0137385_1018260533300012359Vadose Zone SoilASIRLHMSPPGLSPRVQSIGDTQRALQQGLADTEKRHILQQWTQIGGVQRYKDALRQALAGI*
Ga0137360_1035266533300012361Vadose Zone SoilKSLGDKQRQLQRVLDNNDKRGVLQKLTRIGGVQRYKDELRQALAAA*
Ga0137390_1120408223300012363Vadose Zone SoilPGLSPGSQSIGDKQRALQQGLADKEKRQILQKLTQIGGVPRYKDELRQALAGT*
Ga0157355_100161023300012493Unplanted SoilRSLGDKQRQLQQLLANQEKRRVLQQLTQIGGVQRYKDALRQALADA*
Ga0157303_1022186813300012896SoilEVKSLGDTQRQLQHVLANNEKRRVLQKLTQIGGVQRYKDELRQALAAA*
Ga0137419_1019014743300012925Vadose Zone SoilRHLSPPGLSPGVQRIGDKHRAPQPGLADKAKRPILQQLTQIGGVQRYKEELRQALAGH*
Ga0137407_1134667923300012930Vadose Zone SoilMSPPGVSAGVKSLGDKQRQLQQLLANQEKRRVLQQLTQIGGVQRDKDELRQALADA*
Ga0162652_10010302023300012941SoilMAPPGVSTGTKSLGDKQRQLQHFLANQEKRRILQQLTQIGGVQRYTDELRQALAAA*
Ga0137410_1044420923300012944Vadose Zone SoilSPPGVSAEVKSLGDKQRQLQRVLESKETRRVLQKLTQIGGVQRYKLDDQVFCS*
Ga0126375_1060545813300012948Tropical Forest SoilILLHMSPPGVSPGSQSIGDKQRALQQGLADKEKRQILQKLTQIGGVQRYKDELRQALAGT
Ga0126369_1333495723300012971Tropical Forest SoilYCAYLLLHMSPPGLSPGARSIGDKQRALQQGLADTEKRHILQKLTQIGGVQRYKDELRQALAGT*
Ga0075313_103090023300014267Natural And Restored WetlandsCAYILLHLSPPGMSGEAKSLSDKKRHLQNVLEHREKRRVLQKLTQIGGVERYKDELRQALEDA*
Ga0075310_103855723300014302Natural And Restored WetlandsSSAEVKSLGDKQRQLQHFLDTKEKRHVLQKLTQIGGVQRYKDELRRALADA*
Ga0075331_114698113300014310Natural And Restored WetlandsSLGDKQRQLRTYLDAKEKRRILQKLTQFGGVEKFKAEIRQALGDV*
Ga0182037_1132652723300016404SoilAYILLHMSPPGLSPGVHSMGDKQRALQKGLADQEKRHILQKLTQIGGVQRYKDELRQALAGH
Ga0134112_1033985213300017656Grasslands SoilYILLHMSPPGVSAEVKSLGDKQRQLQRVLESKETRRVLQKLTQIGGVQRYKEELREALAD
Ga0184638_120271113300018052Groundwater SedimentGVPPEVKGIGDKQRKVQQCLGHKEKRRILQKLSQIGGVERYKDELRQALADA
Ga0184609_1020017323300018076Groundwater SedimentVPADVKSIGEKQRHIHTLLAKKEKRRVLQKLTQIGGIERYKDELRQALTGI
Ga0184609_1033247813300018076Groundwater SedimentHMSPPGLSPGVQSIGDKQRALQQGLADTEKRHILQQLSQIGGVQRYKDALRQALTGT
Ga0184629_1022804813300018084Groundwater SedimentAPGVQSMGDKQRALQQGLAEKEKRHILQKLTQIGGVQRYKTELRQALTGT
Ga0184629_1071767813300018084Groundwater SedimentLLHMAPPGLSPGAQSLGDRQRALQQGLADQETRHILQPWTQIGGVQRYKDELRQALAGH
Ga0066667_1167398123300018433Grasslands SoilGLSPGHQSVGDKQRALQQGLANKEKRHILQRLSQIGGVQRYKDELRQALAST
Ga0180112_103268633300019238Groundwater SedimentGVSAGAKSLGDKPRQLQHFLGNQEKRRILQQLTQMGGVQRYTDELRQALAAA
Ga0194132_1015569613300020214Freshwater LakeMSPPGVPPEVKGLGDKQRKVQQCLGHKEKRRILQTLSQIGGVERYQDERRQALAAA
Ga0179596_1045494713300021086Vadose Zone SoilHMSPPGVPPEVKSIGDKQRKLQPCLEHKEKRCILQQLSQIGGVQRYKDELRQALAGT
Ga0224508_1005636813300022413SedimentMSVEAKSLSDKKRHLQKVLEHKEKRRVLQKLTQIDGVERYKEELRQALAGSDAL
Ga0212128_1028587923300022563Thermal SpringsMSPPGVPPEVKSVGEKQRHIQKLLENKEKRRVLQKLTHIGGIERYKGELQQALAGG
Ga0212128_1038961613300022563Thermal SpringsMAPPGVPPDITSIGEKQRHIQQLLDNKANRRVRQQLTQIGGVERYKDELRQALTGS
Ga0208654_104956913300026062Natural And Restored WetlandsHLSPPGMSGEAKSLSDKKRHLQNVLEHREKRRVLQKLTQIGGVERYKDELRQALEDA
Ga0257177_106406923300026480SoilGLSPGVHSIGDKQRALQQSLADKEKRQILQKLTQIGGVQRYKDELRQALAGA
Ga0209899_106986023300027490Groundwater SandSAYILLHMSPPGLSPGVQRIGDKQRALQQGLADKEKRHILQQLTQIGGVQRYKDELRQALAGT
Ga0209899_107847323300027490Groundwater SandPAVKSLGDRQRQLQRVLANKEKRRVLQQLTQIGGVQRYKDELRQALEGA
Ga0214468_100443833300027647SoilMSPPGVDDEVESLGDQQRHLQKYLDHKEKRGILQKLTQIGGVQRYKDELRQALADI
Ga0209814_1003466113300027873Populus RhizosphereVYCAHILLSMSPPGVSAGAQSLGAKQRQLQQLLENQEKRRVLQQLTQIGGVQRYTHELRQALADT
Ga0209481_1023653923300027880Populus RhizosphereMSPPGVPPAVKGLGDRQRQLQRVLANKEKRRVLQQLTQIGGVQRYKDELRQALAGA
Ga0209583_1009333633300027910WatershedsVQVHDLLHMSPPGLSPGVQSIGDKQRALRQSLADTEKRHILQQLSQIGGVQHYKDELRQALAGT
Ga0209889_101669233300027952Groundwater SandELTLFVVKSLGDKQRQLQQLFENQEKRRVLQKLTQIGGVQRYQDELRQALAGA
Ga0209889_111682613300027952Groundwater SandILLHMSPPGLSPGVQRIGDKQRALQQGLADKEKRHILQQLTQIGGVQRYKDELRQALAGT
Ga0268253_1038835313300030514AgaveDMCLATSKSGQSLGDKQRQLQQLLENQEKRRVLQQLTQIGGVQRYKDALRQALADV
Ga0268386_1007490323300030619SoilGVSADGESLGGKQRQLQSFLDRKEKRRILQKLTQIGGVQRYKDELRQALADV
Ga0308203_108931513300030829SoilDMSPPGVSVGVKSLGDKQRQLQQLFESQEKRRVLQKLTQIGGVQRYKDELRQALADA
Ga0308194_1014640713300031421SoilPPGLAPGVQSMGDKQRKLRQGLADQEKRHILQQLTQIGGVQRYKAELQQALAGTCSLGSL
Ga0318496_1029373623300031713SoilAYILLHLSPPGVSVEAKSLGDKQRQLQRVLENQGQRRIIQKLTQIGGVERYKDELRQALADA
Ga0306918_1006804813300031744SoilLHMSPPGLSPGAQSIGDKQRALQQGLAAKEKRQILQKLTQIGGVQRYKDELRQALARH
Ga0318502_1088126513300031747SoilAYILLHMSPPGLSPGSQSIGEKQRALQQGLAAKEKRQILQKLSQIGGVQRYKDELRQALAGT
Ga0318509_1081297823300031768SoilILLSMSPPGVAVGARSLGDKQRQLQQLLANQEKRRVLQQLTQIGGVQRYKDALRQALADA
Ga0307473_1050067013300031820Hardwood Forest SoilSPPGVSAGVTSLGDKQRQLQQLLANQEKRRVLQKLTQIGGVQRYKDELRQALAGT
Ga0310885_1015425923300031943SoilMSPPGVSPAVKSLGDRQRQLQRVLANKEKRRVLQQLTQIGGVQRYKDELRQALEGA
Ga0310909_1033423613300031947SoilLLLHMSPPGLSPGARSIGDKQRALQQGLADTEKRHILQKLTQIGGVQRYKDELRQALAGT
Ga0306926_1053185613300031954SoilLHMSPPGLSPGARSIGDKQRALQQGLADTEKRHILQKLTQIGGVQRYKDELRQALAGT
Ga0306922_1113989513300032001SoilLYILLHLSPPGVSAEGKGLGDTQRQLQHALDNNEKRRVLQKLTQIGGVQRYKDELRQALAAA
Ga0310899_1003046013300032017SoilVTAGVTSLSDKQRQLQQLLANQEKRRILQKLTQIGGVQRYQDELRQALAAA
Ga0318575_1069694613300032055SoilVRSQVSWVYGAYLWLHRSPPGVAVEAKSLGDKQRQLQRVLAHPGQRRVIQKLTQMGGVERYKDALRQALADA
Ga0318504_1034478613300032063SoilVYCTYILLHMSPPGLSPGAQSIGDTQRALQQGLADKEKRQILQKLTQIGGVQRYKDELRQALARH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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