Metagenome / Metatranscriptome Family F058391

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F058391
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	49 residues
Representative Sequence	MPIRPFLNGEQFDQETSRILGVAFEQVCVALRIGDCDDHVKQAIANKII
Number of Associated Samples	96
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.77 %
% of genes near scaffold ends (potentially truncated)	88.15 %
% of genes from short scaffolds (< 2000 bps)	94.07 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (73.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (48.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.148 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.56% β-sheet: 0.00% Coil/Unstructured: 58.44%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF01068	DNA_ligase_A_M	4.44
PF04392	ABC_sub_bind	2.22
PF13545	HTH_Crp_2	0.74
PF09339	HTH_IclR	0.74
PF11026	DUF2721	0.74
PF00873	ACR_tran	0.74
PF06689	zf-C4_ClpX	0.74
PF00111	Fer2	0.74
PF13538	UvrD_C_2	0.74
PF00115	COX1	0.74
PF02038	ATP1G1_PLM_MAT8	0.74
PF12833	HTH_18	0.74
PF14196	ATC_hydrolase	0.74
PF04679	DNA_ligase_A_C	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	5.19
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	4.44
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.22

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.33 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.33 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.33 %
Unclassified	root	N/A	26.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.44 %
Unclassified	root	N/A	26.67 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	60.00 %
Unclassified	root	N/A	26.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.74 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.19 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.22 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.19 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.22 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.19 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3.70 %
Bradyrhizobium liaoningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense	0.74 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.74 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.74 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1038024	Not Available	747	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10156998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1083347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10082242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300000956\|JGI10216J12902_104773622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300000956\|JGI10216J12902_109700149	Not Available	657	Open in IMG/M
3300001686\|C688J18823_10316653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1021	Open in IMG/M
3300004633\|Ga0066395_10796968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300005174\|Ga0066680_10606129	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005332\|Ga0066388_100928223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1444	Open in IMG/M
3300005332\|Ga0066388_101100592	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300005332\|Ga0066388_102036197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1030	Open in IMG/M
3300005332\|Ga0066388_103161530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300005332\|Ga0066388_106262031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300005332\|Ga0066388_107523227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300005332\|Ga0066388_108317782	Not Available	517	Open in IMG/M
3300005366\|Ga0070659_101411084	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300005435\|Ga0070714_100569450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1086	Open in IMG/M
3300005441\|Ga0070700_101545353	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300005468\|Ga0070707_101312890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300005471\|Ga0070698_101179946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300005556\|Ga0066707_10720945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300005560\|Ga0066670_10679099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300005713\|Ga0066905_100324413	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300005713\|Ga0066905_100701575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300005713\|Ga0066905_101507046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300005713\|Ga0066905_101569353	Not Available	601	Open in IMG/M
3300005713\|Ga0066905_101910940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300005713\|Ga0066905_102196415	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_100709501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1775	Open in IMG/M
3300005764\|Ga0066903_101626147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1226	Open in IMG/M
3300005764\|Ga0066903_102377474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300005764\|Ga0066903_103782542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300005764\|Ga0066903_104604103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300005764\|Ga0066903_105981478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	638	Open in IMG/M
3300005764\|Ga0066903_107186567	Not Available	576	Open in IMG/M
3300005764\|Ga0066903_107438330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300005764\|Ga0066903_107824025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300005764\|Ga0066903_108152846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300005764\|Ga0066903_108311248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300005764\|Ga0066903_108470069	Not Available	524	Open in IMG/M
3300005764\|Ga0066903_108773679	Not Available	513	Open in IMG/M
3300006038\|Ga0075365_10730507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300006175\|Ga0070712_101897468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300006853\|Ga0075420_100084953	All Organisms → cellular organisms → Bacteria → Proteobacteria	2800	Open in IMG/M
3300006854\|Ga0075425_102166964	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300006854\|Ga0075425_102509924	Not Available	570	Open in IMG/M
3300006904\|Ga0075424_102804665	Not Available	507	Open in IMG/M
3300006914\|Ga0075436_101253935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300009792\|Ga0126374_11732788	Not Available	520	Open in IMG/M
3300010046\|Ga0126384_10180821	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300010046\|Ga0126384_10403585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1155	Open in IMG/M
3300010046\|Ga0126384_12463236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300010047\|Ga0126382_10745454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300010047\|Ga0126382_10838526	Not Available	788	Open in IMG/M
3300010048\|Ga0126373_10780270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1017	Open in IMG/M
3300010358\|Ga0126370_10453835	Not Available	1070	Open in IMG/M
3300010359\|Ga0126376_10349047	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300010359\|Ga0126376_11966567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300010360\|Ga0126372_10451122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1192	Open in IMG/M
3300010360\|Ga0126372_10494611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1146	Open in IMG/M
3300010360\|Ga0126372_12010825	Not Available	625	Open in IMG/M
3300010361\|Ga0126378_11230954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	846	Open in IMG/M
3300010362\|Ga0126377_10531588	Not Available	1212	Open in IMG/M
3300010362\|Ga0126377_13380928	Not Available	516	Open in IMG/M
3300010376\|Ga0126381_104922824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300010397\|Ga0134124_12640294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300010398\|Ga0126383_12073751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300010398\|Ga0126383_12169445	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300012201\|Ga0137365_10264502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense	1278	Open in IMG/M
3300012202\|Ga0137363_10456346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300012204\|Ga0137374_10268836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1417	Open in IMG/M
3300012209\|Ga0137379_10795885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300012212\|Ga0150985_115392833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300012358\|Ga0137368_10682527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300012359\|Ga0137385_10699627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300012948\|Ga0126375_10452708	Not Available	943	Open in IMG/M
3300012957\|Ga0164303_10160797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300012971\|Ga0126369_10482682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1294	Open in IMG/M
3300012971\|Ga0126369_11462097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300012971\|Ga0126369_12993196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300012971\|Ga0126369_13122095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300012989\|Ga0164305_10459134	Not Available	992	Open in IMG/M
3300013297\|Ga0157378_13260290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300013306\|Ga0163162_12099924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	648	Open in IMG/M
3300015372\|Ga0132256_102353659	Not Available	636	Open in IMG/M
3300016270\|Ga0182036_11348028	Not Available	596	Open in IMG/M
3300016341\|Ga0182035_10868939	Not Available	794	Open in IMG/M
3300016404\|Ga0182037_11806691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300016445\|Ga0182038_10047975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2831	Open in IMG/M
3300018468\|Ga0066662_10310150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1332	Open in IMG/M
3300019875\|Ga0193701_1098549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300019890\|Ga0193728_1225952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300021168\|Ga0210406_10063946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3183	Open in IMG/M
3300021560\|Ga0126371_12395986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300022533\|Ga0242662_10265357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300025922\|Ga0207646_11334040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300025929\|Ga0207664_11674816	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300026300\|Ga0209027_1155679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774	Open in IMG/M
3300026332\|Ga0209803_1260255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300027105\|Ga0207944_1024271	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300027669\|Ga0208981_1080643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300027909\|Ga0209382_10851291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	965	Open in IMG/M
3300028710\|Ga0307322_10191185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300028711\|Ga0307293_10176889	Not Available	679	Open in IMG/M
3300028711\|Ga0307293_10301950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300028714\|Ga0307309_10058909	Not Available	852	Open in IMG/M
3300028718\|Ga0307307_10041802	Not Available	1326	Open in IMG/M
3300028719\|Ga0307301_10075334	Not Available	1055	Open in IMG/M
3300028784\|Ga0307282_10338304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300028810\|Ga0307294_10233360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300028814\|Ga0307302_10177757	Not Available	1035	Open in IMG/M
3300028881\|Ga0307277_10219841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
3300028885\|Ga0307304_10034717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1796	Open in IMG/M
3300031446\|Ga0170820_10743621	Not Available	545	Open in IMG/M
3300031768\|Ga0318509_10405586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300031782\|Ga0318552_10276518	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300031797\|Ga0318550_10563442	Not Available	548	Open in IMG/M
3300031821\|Ga0318567_10246378	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300031896\|Ga0318551_10381346	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300031897\|Ga0318520_11085462	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031910\|Ga0306923_12115181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300031954\|Ga0306926_10829826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1112	Open in IMG/M
3300032042\|Ga0318545_10318602	Not Available	559	Open in IMG/M
3300032060\|Ga0318505_10529925	Not Available	555	Open in IMG/M
3300032076\|Ga0306924_12419777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300032174\|Ga0307470_11525824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300032180\|Ga0307471_103337592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300032205\|Ga0307472_102509466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300033290\|Ga0318519_10157221	Not Available	1274	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.11%
Host-Associated	Host-Associated	8.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.11%
Plants	Host-Associated → Plants	8.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.48%
Roots	Host-Associated → Plants → Roots	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.96%
Loam	Environmental → Terrestrial → Soil → Loam	28.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.19%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.74%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.48%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.44%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10380241	3300000580	Forest Soil	MPITLYLSGEKFDEETTRVMGVALEMTCAALQTGPCADDVKQAIANKIIALAKAGERHPDIL*
AF_2010_repII_A1DRAFT_101569982	3300000597	Forest Soil	MPIRPFLNGERFDQDALRTLGVAFEQVCIALRIGDCDDHVKQAIANKIIE
AF_2010_repII_A100DRAFT_10833471	3300000655	Forest Soil	VPIRPFLNGEQFDQETVRILGVAFEQVCIGLRTGDCADDVNQAIA
AF_2010_repII_A001DRAFT_100822421	3300000793	Forest Soil	VPIRPFLNGEQFDQETVRILGVAFEQVCIGLRTGDCADDVNQAIANKII
JGI10216J12902_1047736221	3300000956	Soil	MPITPYLNGERFEPETEHVLGVAFEQVCIALRIGASDDDVKQAIANKVIEL
JGI10216J12902_1097001491	3300000956	Soil	MPIRPFLNGEQFDAETLRILGVAFAQVAIALRIGDCDDD
C688J18823_103166531	3300001686	Soil	MPITPFLNGVKFDPETRLIMGVALEMTCIALRVGLCDDDV
Ga0066395_107969682	3300004633	Tropical Forest Soil	MPIRPFLNGEQLDQETIRILGVAFEQVCVALRTGDCDDYVKQAIANKIIELAK
Ga0066680_106061293	3300005174	Soil	MPITPYLDGSASKFDGETKRVMGVAFEMVCVALRIGDCDDYVKQAIANKV
Ga0066388_1009282233	3300005332	Tropical Forest Soil	MPIKPFLNGEQFDQETVRILGVAFEQVCIGLRTGDCADDVKQAIANKII
Ga0066388_1011005921	3300005332	Tropical Forest Soil	MPIRPFLNGEQFDQETLRILGVAFEQVSITLQTGDCDDDVKQAIANKIIELAKTGERNP
Ga0066388_1020361971	3300005332	Tropical Forest Soil	MPIRPFLTGEEFDQQTIRIFGVAFEQVCVALRIGDCDDDVKQAIANKIIELAKTG
Ga0066388_1031615302	3300005332	Tropical Forest Soil	MPIRPFLNGEQFDQETVRILGVAFEQVCIALRIGDCGDDVKNAIAKKIIELAK
Ga0066388_1062620312	3300005332	Tropical Forest Soil	MPVRPFLNGEQFDQETLRVLGVAFEQVCIGLRTGDCDDDVKQAIANKIIVVAKAGER
Ga0066388_1075232271	3300005332	Tropical Forest Soil	MPIRPFLNGERFDQETLRILGVAFEQVCVGLRTGDCDDHV
Ga0066388_1083177821	3300005332	Tropical Forest Soil	MPITLYLSGEKFDEETTRVMGVALEMTCAALQTGPCADDVKQAIANKIIALAKAGERHP
Ga0070659_1014110841	3300005366	Corn Rhizosphere	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGDCDDDVKQCIASQIIELASDGE
Ga0070714_1005694501	3300005435	Agricultural Soil	MPITQFLDGERLDEETRRALGLAFEMTCIALRVGDCADDVRQAVADKIIALAK
Ga0070700_1015453532	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGDCDDDVKQCIASQIIEL
Ga0070707_1013128901	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPITPFLNGEQFDPETRRVLGVALEMTCIALRTGDCDDGVRQAIAIK
Ga0070698_1011799462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPIIPFLNGERFDPESTRVLSVALEMVCIALRTGDCDDDIKQAIATKLIAL
Ga0066707_107209453	3300005556	Soil	MPITPYLNGQQFDPETKRILGLAFEMTCTALRIGDCDDGVKQAIADKII
Ga0066670_106790992	3300005560	Soil	MPITPFLNGEHFDVETTRVLGVAYEMACIALRIGDCYDDIK
Ga0066905_1003244131	3300005713	Tropical Forest Soil	MPIRPFLNGEQLDQETLRILGLAFEQTSIALRIGDCADDVRQAI
Ga0066905_1007015752	3300005713	Tropical Forest Soil	MPIRPFLNGERFDQETLRILGVAFEQVCVGLRTGDCDDHVKQAIANKIIELAKTGERNPD
Ga0066905_1015070462	3300005713	Tropical Forest Soil	MPIRPFLTGEEFDQQMIRIFGVAFEQVCVALRIGDCDDDVKQAIANKIIELAKTG
Ga0066905_1015693531	3300005713	Tropical Forest Soil	MPIRPFLNSEQFDQETLRVLGVAFEQVCIAVQTGDCEDDVKQAIANKVIELAKTGERNPD
Ga0066905_1019109401	3300005713	Tropical Forest Soil	MPIRPYLNHEQFDQETLRILGVAFEQVCIGLRTGDCDDDVKQAIANKIIALSKTGERNPD
Ga0066905_1021964152	3300005713	Tropical Forest Soil	MPISPYLDGERFDPETKRVLGLAFELVRVVLKTGDCDDDVYRAIARKLIDLNKAGEHN
Ga0066903_1007095012	3300005764	Tropical Forest Soil	MPIRHFLNGEQFDQETVRILGVAFELVCIGLRIGDCDDDVKQAIANKIIELAKTG
Ga0066903_1016261472	3300005764	Tropical Forest Soil	MPIRSFLNGEQFDQETVRILGVAFTQVSVALRIGDCDNDAMHLCR*
Ga0066903_1023774742	3300005764	Tropical Forest Soil	MPINPFLNGEKFDLETTRVIGVAFEMACVALKTGDCADDVKQAIANKIIALAKAGERN
Ga0066903_1037825421	3300005764	Tropical Forest Soil	MPIRPFLHEEFDHETLRILGVAFEQVCIGLRTGDCDD
Ga0066903_1046041033	3300005764	Tropical Forest Soil	MSITPFLNGQKIDCETRRTLGAALELACVALRVGDCTDDVKQAIADKII
Ga0066903_1059814781	3300005764	Tropical Forest Soil	MPITPFLNDENFDQETTRVLGVALELTCVALRTGDCADDVK
Ga0066903_1071865672	3300005764	Tropical Forest Soil	MPIREFLNGENFDPETTRVLGAALELTCVALRVGDCADDVKQAIANKIIALAK
Ga0066903_1074383301	3300005764	Tropical Forest Soil	MPIRLFLKGEQFDQESIRTLGVAFEQVCIALRTGDCADDVKQAIANKI
Ga0066903_1078240252	3300005764	Tropical Forest Soil	MPIRPFLTGEPFDQQTIRILGIAFEQVCVALRIGDCDDEVKQAIANKI
Ga0066903_1081528461	3300005764	Tropical Forest Soil	MPIRPFLNDEQFDQETVRILGVAFEQVCIGLRTGDCDDDVKQAIANKIIALSKTGE
Ga0066903_1083112481	3300005764	Tropical Forest Soil	MPIRPFLNGEQFDQETVRILGVAFELVCIGLRTGD
Ga0066903_1084700691	3300005764	Tropical Forest Soil	MPITPFLNGENFDLETTRVMGVALEMACLGLRTGDCADDVKQAIANKIIALAKAGERNP
Ga0066903_1087736791	3300005764	Tropical Forest Soil	MPITPFLNGENFDSETTRVVGVALEMACLGLRTGDCADDVKQAIANKIIALAKAGERNP
Ga0075365_107305073	3300006038	Populus Endosphere	MPIRPYVDGRKFDDETVRVLGLAFEAVCIALRIGDSADDV
Ga0070716_1006570061	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPITPFLNGERFDLEGERVLRLAFEMVCVALRTGDCDDYVKQAIATKLIALAKAGER
Ga0070712_1018974682	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPITPFLNGERFDPETTRLLSVALEMVCIALRTGDCDDDIKQ
Ga0075420_1000849537	3300006853	Populus Rhizosphere	MPIRPFLNGRRFDHETVRILGIAFEQVCIALQIGASDDEVKQAIANKVIEL
Ga0075425_1021669641	3300006854	Populus Rhizosphere	MPITPFLNGQKVDAETRRVLGVAFELVCVALRTGDCDDDVK
Ga0075425_1025099242	3300006854	Populus Rhizosphere	MPINPFLNGEKFDAETTRAMGAALEMACVALRPGDCADDVKQAIANKIIALARAGERNPD
Ga0075424_1028046651	3300006904	Populus Rhizosphere	MPINPFLNGEKFDAETTRAMGAALEMACVALRPGDCADDVKQAIANKIIALARAGERNP
Ga0075436_1012539352	3300006914	Populus Rhizosphere	MSITPFLNGERFDEETRRALGVAFEMTCIAMRVGDCADDVRQAVADKIIALAKAGERN
Ga0099792_104063951	3300009143	Vadose Zone Soil	MSITPFLDGERFDLEGERVLRLAFEMVCIALRTGDCDDHVKQAIATKLIALAKA
Ga0126374_117327882	3300009792	Tropical Forest Soil	MPIRPFLNDEQFDQETIRILGVAFAQVCIAPRTGDC
Ga0126384_101808212	3300010046	Tropical Forest Soil	MPIFQFLNGENFDPETRRILGVALELVCVGLRTGDRDYDVKQAIAKKIN*
Ga0126384_104035851	3300010046	Tropical Forest Soil	MPIRPFLNGEQFDQETVRILGCAFEQCCVALRIGDCDDDVKQAIAGKIIELAKASAILIDYVRAL*
Ga0126384_124632361	3300010046	Tropical Forest Soil	MPITPFLNGERFELECERVLGVAFEMVCISLRTGDCDDG
Ga0126382_103134892	3300010047	Tropical Forest Soil	MPIRPFLNGGQFDQETLRVLGVAFEQVCIALQIGDCDDDVKQAIANKVIELAKTGVAILTYYASAL*
Ga0126382_107454542	3300010047	Tropical Forest Soil	MAIRPFLNGERFDRETLRILGVAFEQVCVGLRTGDCDDHVKQAIANKIIELAKTG
Ga0126382_108385261	3300010047	Tropical Forest Soil	MPIRPFLNGEPFEEETLRILGVASEQVAIALRIGDCDDD
Ga0126373_107802702	3300010048	Tropical Forest Soil	MPIRPFLNGEPFDEETLRILGVAFEQVAIALRIGDCDDDVKQAIANKII
Ga0126370_104538353	3300010358	Tropical Forest Soil	MPIRPFLNGEDFDPETTRVLGVALEMTCTALRTDDVKQEDIANKIIDLAKAGK*
Ga0126376_103490473	3300010359	Tropical Forest Soil	MPIRPYLNHEQFDQETLRILGVAFEQVCIGLRTGDCADDVKQAIANKIIEL
Ga0126376_119665671	3300010359	Tropical Forest Soil	MPITLFLNGEDFDPETTRVLGVAFELTCVALRVGDCADDVKQAIANKVIALAKAGERNPD
Ga0126372_104511224	3300010360	Tropical Forest Soil	MPIRPFLNGEQFDQETSRILGVAFEQVCVALRIGDCDDHVKQAIANKII
Ga0126372_104946112	3300010360	Tropical Forest Soil	VAERPVAGGRRPMPIRPFLNGEQFDQETRRILGVAFEQVCVALRTGDCDDYVKQAIANKIIELAKTGE
Ga0126372_120108251	3300010360	Tropical Forest Soil	MPIRPFLRGEQFDQEMIRILGVAFEQVSITLRTGDCDDNVSRAIANKIIELAKTGERNPD
Ga0126378_112309541	3300010361	Tropical Forest Soil	MPIQPFLNSENFDLETTRVLGVAFELTCVGLQVGDCADD
Ga0126377_105315881	3300010362	Tropical Forest Soil	MPISPYLDGERVDPEAKRVLGLAFELVRVVLKTGDCDDDVYRAI
Ga0126377_133809282	3300010362	Tropical Forest Soil	MPIRQFTNGQKFDQESLRRLGLAFELVCVALRIDGSDDDVKQAIADKIIELA
Ga0126381_1049228242	3300010376	Tropical Forest Soil	MPIRPFLNGEQFEQETSRILGVAFEQVCVALRIGDCDDHVKQAIANKIIALAKT
Ga0134124_126402941	3300010397	Terrestrial Soil	MPITPFLNGERFDEETRRALGVAFEMTCIAMRVGDCADDVRQAVADKIIALAKAGERNPD
Ga0126383_120737511	3300010398	Tropical Forest Soil	MPLRPFLNGEQFDQETLRVLGVAFEQVCIGLRTGDCADDVKQAIANKIIELAKTGE
Ga0126383_121694451	3300010398	Tropical Forest Soil	MPITPFLNGERFDHETRRVLGVALELVCIAVRTGDCADD
Ga0137365_102645022	3300012201	Vadose Zone Soil	MPITRFLNGERFDPESTRVLSVALEMVCIALRTGDCDDDIKQAIATKLI
Ga0137363_104563461	3300012202	Vadose Zone Soil	MPITPFLNAERFDLEGTRVLSVAFEMICIGLRTGDCDDGVKRAIATSLSS
Ga0137374_102688363	3300012204	Vadose Zone Soil	MPITPFLNGERFDPESARVLSVALEMVCIALRTGDCDDDIKQAIATKLI
Ga0137379_107958851	3300012209	Vadose Zone Soil	MPITPYLDGSASKFDGETKRVMGVAFEMVCVALRIGDCDDY
Ga0150985_1153928331	3300012212	Avena Fatua Rhizosphere	MPIAPYLNGQRFDPETKRVLGVAFELVCIALRIGDSDDDVKRALA
Ga0137368_106825271	3300012358	Vadose Zone Soil	MPITPFLNGERFDPETTRILSVALEMTCIALRTGDCDDGVRQAIAMKIIEI
Ga0137385_106996271	3300012359	Vadose Zone Soil	MPINPYLDGSASKFDHETKRVMGVAFEMVCIALRIGECDDYVKQAIANK
Ga0126375_104527082	3300012948	Tropical Forest Soil	MPITPFLNDENFDQETTRVLGVALELTCVALRTGDCADDVKQAIANKIIALAKAGERNPD
Ga0164303_101607971	3300012957	Soil	MPITQFLDGERLDEETRRALGLAFEMTCIALRVGDCADDVRQAVANKLIA
Ga0126369_104826822	3300012971	Tropical Forest Soil	MPITPFLNGESFDLETTRVMGVALEMTCLALRTGDCADDV*
Ga0126369_114620973	3300012971	Tropical Forest Soil	MPIRSFLNGEQFDQETVRILGVAFEQVCIGLRTGDCADDVKQAIAN*
Ga0126369_129931961	3300012971	Tropical Forest Soil	MPITPFLSGEQFDRETLRILGVAFEQTCVALQIGDCDDDVRQAIANNIIEL
Ga0126369_131220952	3300012971	Tropical Forest Soil	MPVRPFLNGEQFDQETLRVLGVAFEQVCIGLRAGDCDDDVKQAIANKIIVVAKAGERNPD
Ga0164305_104591341	3300012989	Soil	MTPFLDGEHFDVETTRVLGVAYEMLCIALRTGDCDDGVKQAIATK
Ga0157378_132602903	3300013297	Miscanthus Rhizosphere	MGLPMPITPFLKGEKFDAETTRAMGAALEMACVALRTGDCADDVKQVIANKIIALAKAG
Ga0163162_120999242	3300013306	Switchgrass Rhizosphere	MERDMPITPYLNGHRVSAEERRVLSVAFEMVCITLRIGDCDDGVKQAIATKI
Ga0132256_1023536591	3300015372	Arabidopsis Rhizosphere	MTITPYLNDEQFDLETKRVLDVAFEKVCLGLRTGDCADDVKQAI
Ga0182036_113480282	3300016270	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGDCADDVKQAIANKIISLA
Ga0182035_108689391	3300016341	Soil	MPIRPFLNGEQFDQETIRILGVALEQVCIALPTGDCDDDVKQAI
Ga0182037_118066912	3300016404	Soil	MPIRPFLNGEQFDQETSRILGVAFEQVCVALRIGDCDDHVKQAIANKIIALAKTGERNP
Ga0182038_100479758	3300016445	Soil	MPIRPFLTGEQFDQQTIRLFGVAFEQVCVALRIGDCDDDVK
Ga0066662_103101502	3300018468	Grasslands Soil	MPITPFLDGHRFDRESERVLGVAFEMVCVALRTGDCDDG
Ga0193701_10985492	3300019875	Soil	RSRLSRGQARMPITPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDDRTGRRE
Ga0193728_12259521	3300019890	Soil	MPISPFLNGERFDPETRRVLGLALEMTCLALRPGDCADDVKQAIANKIIALAK
Ga0210406_100639461	3300021168	Soil	MPITQFLDGERLDEETRRALGLAFEMTCIALRVGDCADDVRQAVANKLIALAKVGERNP
Ga0210406_108229861	3300021168	Soil	MPITPFLDGEQFDLEGERVLRLAFEMVCIALQTGDCDDHVKQAIATKLITLAKAG
Ga0126371_123959862	3300021560	Tropical Forest Soil	MPIRPFLNDERFDQEALRTLGVAFEQVCIALRIGDCDDHVKQAIA
Ga0242662_102653572	3300022533	Soil	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGDCDDYVKRCIASQIIELASDGERNPD
Ga0207646_113340403	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPITPFLNGEQFDPETRRVLGVALEMTCIALRTGDCDDGV
Ga0207664_116748162	3300025929	Agricultural Soil	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGDC
Ga0209027_11556791	3300026300	Grasslands Soil	MPIIPFLDGEHFDVETTRVLGVAYEMVCIALRIGDCDDDIKQAIATKIIALAKAGERHPD
Ga0209803_12602552	3300026332	Soil	MPITPFLNGEHFDPETMRVLGVALEMVCIALRTGDCDDDIKQ
Ga0207944_10242712	3300027105	Forest Soil	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGDCDDDVKQCIASQIIELASDG
Ga0208981_10806431	3300027669	Forest Soil	MPITPFLNGERFDPEDKRVLGLAFEMVCIALRIGDCDDDVKQAIATK
Ga0209382_108512911	3300027909	Populus Rhizosphere	MPITPFLNGEPFDPESRRVLRVALEMVCIALRTGDCDEGVQQAIS
Ga0307322_101911852	3300028710	Soil	MPITPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDDRTGRRE
Ga0307293_101768891	3300028711	Soil	GQARMPMTPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDHRTGRRE
Ga0307293_103019501	3300028711	Soil	MPITPFLNGERFDLETKRVLGVAFELVCIALRVGDCDDGVKQAIA
Ga0307309_100589091	3300028714	Soil	MPITPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDHRTGRRE
Ga0307307_100418022	3300028718	Soil	MPMTPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDHRTGRRE
Ga0307301_100753341	3300028719	Soil	FLNGERFDPEDKRVLGVAFEMVCIPLRIGDSDDDRTGRRE
Ga0307282_103383041	3300028784	Soil	MPITPFLNGERFDLEDKRVLGVAFELVCIALRIGDCDDGVKQAIATKIIDL
Ga0307294_102333602	3300028810	Soil	MPITPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDDRTGRRK
Ga0307302_101777573	3300028814	Soil	TPFLNGERFDPEDKRVLGVAFEMVCIALRIGDSDDHRTGRRE
Ga0307277_102198411	3300028881	Soil	MPITPFLNGQKFDAETRRVLGVAFELVCVALRTGNC
Ga0307304_100347171	3300028885	Soil	MPITPFLNGERFDLETKRVLGVAFELVCIALRVGDCDDGVKQAIATK
Ga0170820_107436211	3300031446	Forest Soil	MPITPYLNGARFDPETKRVLGLALEAVCVALRIGDSGDDVRQAIATKIIERVKA
Ga0318509_104055861	3300031768	Soil	MPIRPFLTGEQFDQQTIRLFGVAFEQVCVALRIGDCDDDVKQAIANKI
Ga0318552_102765181	3300031782	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGD
Ga0318550_105634422	3300031797	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGDCADDVKQAHRQQDHF
Ga0318567_102463781	3300031821	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGDCADDVKQAIANKIISLAKTGERNPD
Ga0318551_103813463	3300031896	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALLVGDCADDVKQAIANKIIS
Ga0318520_110854622	3300031897	Soil	MPIRPFLNGEQFDQETLRILGVAFEQVCIALRIGDCDDDVKQAIANKIIESA
Ga0306923_121151812	3300031910	Soil	MPIRPFLNGEQFDQETIRILGVALEQVCIALRTGDCDDDVKQAIVNK
Ga0306926_108298262	3300031954	Soil	MPITPFLNGESFDSETTRVMGVALEMTCVALKTGDRADDVKQAIRQIIARASIGAASH
Ga0310911_102125672	3300032035	Soil	MPITPFLDGERFDPETKRVLGVAFEMICVALRTGDCDEGVYRAIATKLIARAKAGE
Ga0318545_103186021	3300032042	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGDCADDVKQAIANKIISLAKTGERNPDVL
Ga0318505_105299251	3300032060	Soil	MPIRPFLNGEQFDQETIRILGVALEQVCIALPTGD
Ga0306924_124197772	3300032076	Soil	MPIRPFLNGERFDQETLRILGVAFELVCIALRVGDCDD
Ga0307470_115258242	3300032174	Hardwood Forest Soil	MTPFLDGEHFDVETTRVLGVAYEMVCIALRIGDCDDDIKQVIATKII
Ga0307471_1033375921	3300032180	Hardwood Forest Soil	MPTTQFLNGERFDLESERVIRVAFEMVCIALRTGDSDDDVK
Ga0307472_1025094661	3300032205	Hardwood Forest Soil	MTIMPFLDGERFDLEGERVLRLAFEMVCITLRTGDCDDHVK
Ga0318519_101572212	3300033290	Soil	MPIRSLLNGEKFDSETTRVLGVALELVCVALQVGDCADDVKQAIANKII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058391

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences